Query 033218
Match_columns 125
No_of_seqs 104 out of 1796
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 18:37:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3md3_A Nuclear and cytoplasmic 100.0 2.6E-26 9E-31 140.3 16.3 119 1-122 48-166 (166)
2 2yh0_A Splicing factor U2AF 65 99.9 1.2E-25 4.3E-30 141.0 15.0 123 1-124 58-195 (198)
3 2g4b_A Splicing factor U2AF 65 99.9 2E-25 6.8E-30 137.3 14.3 115 1-121 58-172 (172)
4 1b7f_A Protein (SXL-lethal pro 99.9 3.9E-25 1.3E-29 135.5 14.5 115 1-120 52-168 (168)
5 2qfj_A FBP-interacting repress 99.9 1.2E-25 4.3E-30 142.7 11.3 124 1-124 77-206 (216)
6 1fxl_A Paraneoplastic encephal 99.9 6.7E-25 2.3E-29 134.2 13.8 115 1-120 51-167 (167)
7 1fje_B Nucleolin RBD12, protei 99.9 9.6E-25 3.3E-29 134.7 12.8 114 1-123 61-174 (175)
8 2i2y_A Fusion protein consists 99.9 2.8E-25 9.6E-30 134.4 10.0 118 1-124 20-149 (150)
9 1l3k_A Heterogeneous nuclear r 99.9 3.3E-24 1.1E-28 134.3 14.9 122 1-124 62-184 (196)
10 2ghp_A U4/U6 snRNA-associated 99.9 1.4E-24 4.7E-29 143.7 13.7 122 1-123 166-291 (292)
11 4fxv_A ELAV-like protein 1; RN 99.9 2.5E-24 8.5E-29 121.9 12.1 82 41-122 17-98 (99)
12 4f02_A Polyadenylate-binding p 99.9 1.9E-24 6.5E-29 137.5 11.9 118 1-123 64-181 (213)
13 3smz_A Protein raver-1, ribonu 99.9 9.2E-24 3.2E-28 139.2 14.9 121 1-124 144-265 (284)
14 2kn4_A Immunoglobulin G-bindin 99.9 9.3E-24 3.2E-28 128.7 13.2 124 1-124 20-151 (158)
15 3smz_A Protein raver-1, ribonu 99.9 5.7E-23 2E-27 135.4 15.2 112 1-123 64-175 (284)
16 3pgw_A U1-A; protein-RNA compl 99.9 8.3E-23 2.8E-27 134.5 15.0 76 42-122 206-282 (282)
17 3tyt_A Heterogeneous nuclear r 99.9 3.5E-23 1.2E-27 131.0 12.4 118 1-120 49-204 (205)
18 1rk8_A CG8781-PA, CG8781-PA pr 99.9 4.2E-23 1.4E-27 126.7 12.3 123 1-123 13-152 (165)
19 3nmr_A Cugbp ELAV-like family 99.9 4.4E-23 1.5E-27 127.0 12.3 116 1-121 54-175 (175)
20 1qm9_A Polypyrimidine tract-bi 99.9 2.9E-23 9.9E-28 130.5 11.7 118 1-123 48-197 (198)
21 2adc_A Polypyrimidine tract-bi 99.9 6.9E-23 2.4E-27 131.6 13.5 118 1-123 79-228 (229)
22 3s8s_A Histone-lysine N-methyl 99.9 1E-22 3.4E-27 117.3 12.2 84 40-123 3-86 (110)
23 2cjk_A Nuclear polyadenylated 99.9 6.8E-24 2.3E-28 129.9 5.9 115 1-123 52-166 (167)
24 2do4_A Squamous cell carcinoma 99.9 5.7E-22 2E-26 112.3 13.4 87 37-124 11-97 (100)
25 3md1_A Nuclear and cytoplasmic 99.9 5E-22 1.7E-26 108.8 12.5 82 43-124 1-82 (83)
26 2lxi_A RNA-binding protein 10; 99.9 2.2E-23 7.5E-28 116.3 7.1 82 43-124 1-84 (91)
27 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.2E-22 1.1E-26 110.6 11.7 83 41-123 4-86 (87)
28 2jrs_A RNA-binding protein 39; 99.9 6.2E-22 2.1E-26 113.6 12.1 88 37-124 20-107 (108)
29 2cqc_A Arginine/serine-rich sp 99.9 1.2E-21 4.2E-26 109.8 13.0 85 38-122 10-94 (95)
30 2cq0_A Eukaryotic translation 99.9 1E-21 3.6E-26 111.7 12.7 86 39-124 11-96 (103)
31 3mdf_A Peptidyl-prolyl CIS-tra 99.9 5.5E-22 1.9E-26 109.2 11.0 82 40-121 4-85 (85)
32 2dgo_A Cytotoxic granule-assoc 99.9 2.4E-21 8.3E-26 112.2 14.2 87 38-124 10-96 (115)
33 2x1f_A MRNA 3'-END-processing 99.9 6.5E-22 2.2E-26 111.3 11.4 83 42-124 1-83 (96)
34 3sde_A Paraspeckle component 1 99.9 1.2E-21 4.2E-26 127.9 14.3 111 1-123 65-179 (261)
35 2dnz_A Probable RNA-binding pr 99.9 6E-22 2.1E-26 111.2 11.0 85 40-124 2-86 (95)
36 2la6_A RNA-binding protein FUS 99.9 1.2E-21 4E-26 110.8 12.1 86 36-121 6-99 (99)
37 1x5u_A Splicing factor 3B subu 99.9 9.3E-22 3.2E-26 112.3 11.5 87 38-124 10-96 (105)
38 2cpz_A CUG triplet repeat RNA- 99.9 1.9E-21 6.4E-26 112.7 12.9 86 39-124 21-106 (115)
39 1whw_A Hypothetical protein ri 99.9 1.2E-21 4.2E-26 110.7 11.5 85 40-124 5-89 (99)
40 2e5h_A Zinc finger CCHC-type a 99.9 1.5E-21 5.3E-26 109.3 11.8 84 38-121 11-94 (94)
41 2dgs_A DAZ-associated protein 99.9 1.6E-21 5.4E-26 110.3 11.5 84 40-124 7-90 (99)
42 1x5t_A Splicing factor 3B subu 99.9 8.2E-22 2.8E-26 110.8 10.2 84 41-124 3-87 (96)
43 2lea_A Serine/arginine-rich sp 99.9 1.1E-22 3.9E-27 121.0 7.0 117 2-124 12-128 (135)
44 2lkz_A RNA-binding protein 5; 99.9 3.4E-22 1.2E-26 112.1 8.5 82 41-122 7-94 (95)
45 1p27_B RNA-binding protein 8A; 99.9 1.3E-21 4.6E-26 111.8 11.2 85 40-124 20-104 (106)
46 1x4h_A RNA-binding protein 28; 99.9 2.2E-21 7.4E-26 111.8 12.1 87 38-124 10-102 (111)
47 1oo0_B CG8781-PA, drosophila Y 99.9 1.6E-21 5.4E-26 112.2 11.2 86 39-124 22-107 (110)
48 4f25_A Polyadenylate-binding p 99.9 2.2E-21 7.5E-26 112.5 11.7 81 42-124 4-84 (115)
49 2cqp_A RNA-binding protein 12; 99.9 1.7E-21 6E-26 109.9 11.0 87 39-125 11-97 (98)
50 2ghp_A U4/U6 snRNA-associated 99.9 1.6E-21 5.5E-26 129.0 12.5 109 1-123 88-197 (292)
51 2dng_A Eukaryotic translation 99.9 6.2E-21 2.1E-25 108.5 13.2 86 37-124 9-94 (103)
52 2dnm_A SRP46 splicing factor; 99.9 1.1E-21 3.6E-26 111.7 9.9 85 39-123 9-93 (103)
53 2cph_A RNA binding motif prote 99.9 2.6E-21 8.9E-26 110.7 11.4 87 38-124 10-98 (107)
54 2cpf_A RNA binding motif prote 99.9 2.5E-21 8.6E-26 109.2 11.0 84 41-124 3-89 (98)
55 2dnh_A Bruno-like 5, RNA bindi 99.9 6.4E-21 2.2E-25 108.8 12.8 84 40-124 12-98 (105)
56 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.9E-21 6.3E-26 110.5 10.4 85 40-124 9-93 (102)
57 2kxn_B Transformer-2 protein h 99.9 1.2E-21 4.1E-26 115.7 9.7 87 38-124 41-127 (129)
58 3p5t_L Cleavage and polyadenyl 99.9 3.2E-22 1.1E-26 111.3 6.9 81 44-124 2-84 (90)
59 2d9p_A Polyadenylate-binding p 99.9 4.5E-21 1.5E-25 109.1 11.7 85 38-124 10-94 (103)
60 1u6f_A Tcubp1, RNA-binding pro 99.9 5.8E-21 2E-25 114.0 12.6 86 39-124 38-123 (139)
61 4a8x_A RNA-binding protein wit 99.9 2.4E-21 8.2E-26 107.2 10.1 83 42-124 3-86 (88)
62 1x5s_A Cold-inducible RNA-bind 99.9 1.6E-21 5.6E-26 110.7 9.3 85 40-124 9-93 (102)
63 1wi8_A EIF-4B, eukaryotic tran 99.9 6.8E-21 2.3E-25 108.5 12.0 85 38-124 10-95 (104)
64 2khc_A Testis-specific RNP-typ 99.9 3.9E-21 1.3E-25 111.8 11.0 83 39-121 36-118 (118)
65 2div_A TRNA selenocysteine ass 99.9 4E-21 1.4E-25 108.6 10.7 84 40-123 6-94 (99)
66 3ucg_A Polyadenylate-binding p 99.9 6E-21 2E-25 105.8 11.1 81 43-124 6-86 (89)
67 2dgp_A Bruno-like 4, RNA bindi 99.9 3.6E-21 1.2E-25 110.0 10.4 86 39-124 9-97 (106)
68 3ulh_A THO complex subunit 4; 99.9 1.1E-20 3.7E-25 108.2 12.3 83 38-121 24-106 (107)
69 3ns6_A Eukaryotic translation 99.9 4.6E-22 1.6E-26 112.7 6.4 82 42-123 5-93 (100)
70 2cpe_A RNA-binding protein EWS 99.9 7.4E-21 2.5E-25 109.9 11.6 86 39-124 11-104 (113)
71 2fy1_A RNA-binding motif prote 99.9 5.3E-21 1.8E-25 111.1 10.8 84 40-124 4-87 (116)
72 2ywk_A Putative RNA-binding pr 99.9 8.8E-21 3E-25 106.4 11.2 83 39-122 12-94 (95)
73 2cq3_A RNA-binding protein 9; 99.9 3.5E-20 1.2E-24 105.4 13.6 85 38-124 10-94 (103)
74 3n9u_C Cleavage and polyadenyl 99.9 6.1E-21 2.1E-25 116.0 10.9 82 42-123 54-137 (156)
75 2cqd_A RNA-binding region cont 99.9 1.9E-20 6.4E-25 108.7 12.4 85 38-123 12-96 (116)
76 2cqi_A Nucleolysin TIAR; RNA r 99.9 3.3E-20 1.1E-24 105.5 13.1 84 39-124 11-94 (103)
77 2dgv_A HnRNP M, heterogeneous 99.9 1.1E-20 3.6E-25 105.4 10.9 83 40-124 5-87 (92)
78 1p1t_A Cleavage stimulation fa 99.9 1.7E-21 6E-26 110.9 7.8 84 41-124 6-89 (104)
79 2dh8_A DAZ-associated protein 99.9 9E-21 3.1E-25 108.2 10.4 86 38-124 11-96 (105)
80 1h2v_Z 20 kDa nuclear CAP bind 99.9 2.6E-20 9E-25 113.2 13.1 84 40-123 36-119 (156)
81 2dhg_A TRNA selenocysteine ass 99.9 7.1E-21 2.4E-25 108.4 9.7 83 40-123 6-90 (104)
82 2kt5_A RNA and export factor-b 99.9 2.7E-20 9.2E-25 109.2 12.4 84 39-123 31-114 (124)
83 3ex7_B RNA-binding protein 8A; 99.9 6.6E-21 2.3E-25 112.0 9.7 85 39-123 18-102 (126)
84 2dgw_A Probable RNA-binding pr 99.9 4E-20 1.4E-24 102.9 12.4 82 40-124 7-88 (91)
85 2rs2_A Musashi-1, RNA-binding 99.9 9.7E-21 3.3E-25 108.8 10.1 85 39-124 21-105 (109)
86 3r27_A HnRNP L, heterogeneous 99.8 1.4E-20 4.7E-25 106.0 10.1 78 40-123 18-97 (100)
87 2dgx_A KIAA0430 protein; RRM d 99.8 2.3E-20 7.9E-25 104.9 11.1 81 41-124 7-91 (96)
88 3s7r_A Heterogeneous nuclear r 99.8 3.6E-20 1.2E-24 102.3 11.6 80 40-120 8-87 (87)
89 2do0_A HnRNP M, heterogeneous 99.8 9.7E-20 3.3E-24 105.3 13.7 82 40-122 12-93 (114)
90 1x4a_A Splicing factor, argini 99.8 6.2E-20 2.1E-24 105.4 12.7 84 38-124 17-100 (109)
91 2cqg_A TDP-43, TAR DNA-binding 99.8 1.2E-19 4E-24 103.2 13.7 85 38-124 10-94 (103)
92 2ek1_A RNA-binding protein 12; 99.8 8.6E-21 2.9E-25 106.4 8.7 83 40-122 12-94 (95)
93 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-20 4.1E-25 107.2 8.9 79 40-124 13-93 (105)
94 1x5o_A RNA binding motif, sing 99.8 6.2E-20 2.1E-24 106.1 12.1 84 40-124 22-113 (114)
95 2err_A Ataxin-2-binding protei 99.8 2.5E-20 8.5E-25 107.1 9.9 84 38-123 24-107 (109)
96 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4E-21 1.4E-25 108.8 6.4 85 38-124 14-99 (100)
97 2cq4_A RNA binding motif prote 99.8 5.4E-21 1.9E-25 110.6 7.0 81 42-123 24-104 (114)
98 1x4b_A Heterogeneous nuclear r 99.8 1.7E-20 5.7E-25 108.9 9.0 82 42-124 26-107 (116)
99 2cpi_A CCR4-NOT transcription 99.8 3E-20 1E-24 107.1 10.0 86 39-124 11-102 (111)
100 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 6E-20 2E-24 109.6 11.5 82 39-120 59-140 (140)
101 2dis_A Unnamed protein product 99.8 2.8E-20 9.5E-25 106.8 9.6 85 40-124 5-93 (109)
102 2jwn_A Embryonic polyadenylate 99.8 5.3E-20 1.8E-24 107.9 10.8 81 42-123 35-115 (124)
103 2m2b_A RNA-binding protein 10; 99.8 7.3E-21 2.5E-25 112.6 7.2 84 40-124 20-109 (131)
104 1x4e_A RNA binding motif, sing 99.8 2.9E-21 1E-25 106.3 4.8 82 40-121 2-83 (85)
105 1s79_A Lupus LA protein; RRM, 99.8 3.2E-20 1.1E-24 105.6 9.1 80 40-121 8-87 (103)
106 1x4d_A Matrin 3; structural ge 99.8 2.8E-20 9.5E-25 105.4 8.6 79 40-124 12-93 (102)
107 2cq1_A PTB-like protein L; RRM 99.8 1.7E-19 5.9E-24 102.1 11.7 79 39-123 11-91 (101)
108 2fc8_A NCL protein; structure 99.8 2.2E-19 7.5E-24 101.9 12.0 84 38-124 10-93 (102)
109 1why_A Hypothetical protein ri 99.8 1.7E-19 5.7E-24 101.5 11.3 79 40-124 14-94 (97)
110 2a3j_A U1 small nuclear ribonu 99.8 6.6E-20 2.3E-24 107.8 9.9 83 39-124 25-111 (127)
111 2mss_A Protein (musashi1); RNA 99.8 1.6E-20 5.6E-25 100.9 6.6 75 45-120 1-75 (75)
112 2fc9_A NCL protein; structure 99.8 1.8E-19 6.3E-24 102.0 11.1 82 39-124 11-92 (101)
113 2dnq_A RNA-binding protein 4B; 99.8 1.8E-19 6.3E-24 100.0 10.6 77 40-124 5-81 (90)
114 2ad9_A Polypyrimidine tract-bi 99.8 1E-19 3.6E-24 105.5 9.9 78 40-123 28-107 (119)
115 2xnq_A Nuclear polyadenylated 99.8 2.7E-19 9.4E-24 100.7 11.4 80 37-124 16-96 (97)
116 1x4c_A Splicing factor, argini 99.8 4.6E-19 1.6E-23 101.6 12.6 78 40-124 12-94 (108)
117 2db1_A Heterogeneous nuclear r 99.8 8.6E-20 2.9E-24 106.2 9.6 82 39-122 13-97 (118)
118 2ki2_A SS-DNA binding protein 99.8 5.8E-21 2E-25 106.1 4.4 79 44-123 2-80 (90)
119 1nu4_A U1A RNA binding domain; 99.8 4.1E-20 1.4E-24 104.0 7.7 82 40-124 5-90 (97)
120 2nlw_A Eukaryotic translation 99.8 7.7E-20 2.6E-24 104.4 8.8 81 41-123 13-100 (105)
121 2e5j_A Methenyltetrahydrofolat 99.8 1.9E-19 6.5E-24 101.3 10.2 82 38-124 14-95 (97)
122 2cpy_A RNA-binding protein 12; 99.8 7.1E-20 2.4E-24 106.0 8.6 82 40-123 12-94 (114)
123 2wbr_A GW182, gawky, LD47780P; 99.8 1.1E-19 3.6E-24 99.3 8.7 74 42-121 6-79 (89)
124 2cpj_A Non-POU domain-containi 99.8 1.7E-19 5.9E-24 101.8 9.9 79 40-124 12-90 (99)
125 3lqv_A PRE-mRNA branch site pr 99.8 8.1E-20 2.8E-24 105.8 8.7 81 40-123 5-85 (115)
126 1wex_A Hypothetical protein (r 99.8 1.9E-19 6.4E-24 102.5 9.9 78 40-123 12-91 (104)
127 1fj7_A Nucleolin RBD1, protein 99.8 8.5E-21 2.9E-25 107.6 4.3 83 40-124 14-96 (101)
128 2jvo_A Nucleolar protein 3; nu 99.8 2.1E-19 7.1E-24 103.1 10.2 79 38-124 26-104 (108)
129 2cpx_A Hypothetical protein FL 99.8 2.5E-20 8.4E-25 108.0 6.3 85 40-124 22-106 (115)
130 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.6E-20 8.8E-25 100.6 5.9 76 44-120 1-76 (77)
131 2hgl_A HNRPF protein, heteroge 99.8 6.9E-20 2.3E-24 108.9 8.2 83 38-122 39-124 (136)
132 1wg5_A Heterogeneous nuclear r 99.8 1.8E-19 6.3E-24 102.6 9.7 83 39-123 11-94 (104)
133 2dgt_A RNA-binding protein 30; 99.8 6.7E-19 2.3E-23 98.1 11.8 77 40-124 7-83 (92)
134 1wf1_A RNA-binding protein RAL 99.8 2E-19 6.7E-24 103.4 9.7 94 20-123 6-100 (110)
135 1x4g_A Nucleolysin TIAR; struc 99.8 3.1E-19 1.1E-23 102.5 10.4 79 40-124 22-100 (109)
136 1fjc_A Nucleolin RBD2, protein 99.8 1.5E-19 5.1E-24 101.5 8.7 80 40-124 13-92 (96)
137 2cpd_A Apobec-1 stimulating pr 99.8 1.3E-18 4.5E-23 98.2 12.7 79 38-124 10-90 (99)
138 1fxl_A Paraneoplastic encephal 99.8 7.3E-19 2.5E-23 107.2 12.5 82 42-123 1-82 (167)
139 2ytc_A PRE-mRNA-splicing facto 99.8 5.2E-19 1.8E-23 97.1 10.7 76 40-121 9-85 (85)
140 2jvr_A Nucleolar protein 3; RN 99.8 2.7E-19 9.3E-24 102.9 9.8 79 41-123 26-105 (111)
141 1wel_A RNA-binding protein 12; 99.8 3.9E-20 1.3E-24 108.5 6.3 83 39-122 21-103 (124)
142 2la4_A Nuclear and cytoplasmic 99.8 2.4E-19 8.3E-24 101.5 9.2 77 41-123 25-101 (101)
143 4f02_A Polyadenylate-binding p 99.8 7.5E-19 2.6E-23 111.6 12.4 84 40-123 12-95 (213)
144 1wez_A HnRNP H', FTP-3, hetero 99.8 1.7E-19 5.8E-24 102.4 8.3 82 39-123 11-92 (102)
145 3q2s_C Cleavage and polyadenyl 99.8 1E-19 3.5E-24 116.8 8.3 81 42-122 67-149 (229)
146 1b7f_A Protein (SXL-lethal pro 99.8 7E-19 2.4E-23 107.5 11.0 82 42-123 2-83 (168)
147 2krb_A Eukaryotic translation 99.8 6.5E-20 2.2E-24 100.0 5.6 73 43-117 1-80 (81)
148 2dnn_A RNA-binding protein 12; 99.8 3.9E-19 1.3E-23 102.0 9.1 78 42-122 15-92 (109)
149 2dnp_A RNA-binding protein 14; 99.8 1.1E-18 3.7E-23 96.9 10.6 77 40-124 6-82 (90)
150 2dgu_A Heterogeneous nuclear r 99.8 1.3E-18 4.3E-23 98.9 11.0 77 40-124 8-84 (103)
151 2xs2_A Deleted in azoospermia- 99.8 2E-19 6.9E-24 102.0 6.9 80 41-123 7-86 (102)
152 1iqt_A AUF1, heterogeneous nuc 99.8 8.1E-20 2.8E-24 98.2 5.0 75 45-120 1-75 (75)
153 2f3j_A RNA and export factor b 99.8 7.9E-19 2.7E-23 108.7 10.0 82 41-123 86-167 (177)
154 2hvz_A Splicing factor, argini 99.8 2.9E-19 9.8E-24 101.2 7.4 75 44-123 1-75 (101)
155 2e44_A Insulin-like growth fac 99.8 9E-19 3.1E-23 98.3 9.2 81 39-123 11-92 (96)
156 1x4f_A Matrin 3; structural ge 99.8 6.1E-19 2.1E-23 101.3 8.3 79 40-124 22-103 (112)
157 3egn_A RNA-binding protein 40; 99.8 1.7E-19 5.6E-24 108.2 6.2 81 40-123 42-130 (143)
158 2lmi_A GRSF-1, G-rich sequence 99.8 1E-19 3.5E-24 104.2 5.0 82 39-122 7-91 (107)
159 2lcw_A RNA-binding protein FUS 99.7 7.3E-21 2.5E-25 110.4 0.0 84 41-124 5-96 (116)
160 3pgw_S U1-70K; protein-RNA com 99.8 2.4E-18 8.2E-23 119.4 12.3 84 40-123 99-182 (437)
161 2cqh_A IGF-II mRNA-binding pro 99.8 9.3E-19 3.2E-23 97.7 8.3 78 40-124 5-84 (93)
162 3zzy_A Polypyrimidine tract-bi 99.8 4.4E-18 1.5E-22 99.9 11.5 77 42-123 27-106 (130)
163 2voo_A Lupus LA protein; RNA-b 99.8 4.9E-18 1.7E-22 106.5 12.0 118 3-122 63-186 (193)
164 2kvi_A Nuclear polyadenylated 99.8 1.1E-18 3.6E-23 98.1 7.9 76 40-123 7-83 (96)
165 1l3k_A Heterogeneous nuclear r 99.8 5.7E-18 1.9E-22 105.9 11.7 84 39-123 9-92 (196)
166 1sjr_A Polypyrimidine tract-bi 99.8 4.3E-18 1.5E-22 103.4 10.7 78 42-123 45-124 (164)
167 2j8a_A Histone-lysine N-methyl 99.8 2.5E-18 8.4E-23 99.9 9.0 78 44-121 3-94 (136)
168 2diu_A KIAA0430 protein; struc 99.8 3.3E-18 1.1E-22 94.3 8.8 74 41-124 6-85 (96)
169 1whx_A Hypothetical protein ri 99.8 1.5E-18 5.3E-23 99.9 7.8 75 42-122 9-83 (111)
170 2e5g_A U6 snRNA-specific termi 99.8 6.1E-18 2.1E-22 94.6 10.0 77 41-123 6-82 (94)
171 1x5p_A Negative elongation fac 99.8 2.9E-17 9.9E-22 92.3 12.1 77 40-124 12-88 (97)
172 1wg1_A KIAA1579 protein, homol 99.8 5.6E-18 1.9E-22 93.6 9.0 75 42-123 4-78 (88)
173 2dha_A FLJ20171 protein; RRM d 99.8 1.4E-18 4.7E-23 101.6 6.7 80 41-122 21-104 (123)
174 2e5i_A Heterogeneous nuclear r 99.8 2.8E-17 9.7E-22 96.0 11.9 74 44-123 26-102 (124)
175 3md3_A Nuclear and cytoplasmic 99.8 1.2E-17 4.1E-22 101.7 10.5 79 44-123 1-79 (166)
176 2hgn_A Heterogeneous nuclear r 99.8 6.2E-19 2.1E-23 105.1 4.3 81 40-123 43-123 (139)
177 3d2w_A TAR DNA-binding protein 99.8 1.3E-17 4.4E-22 92.4 9.3 77 39-124 7-85 (89)
178 3tyt_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 105.4 10.3 76 42-122 3-79 (205)
179 2hgm_A HNRPF protein, heteroge 99.7 1.9E-18 6.5E-23 101.3 5.9 80 40-122 39-120 (126)
180 3beg_B Splicing factor, argini 99.7 5.7E-18 1.9E-22 98.1 7.0 76 41-123 14-94 (115)
181 2cq2_A Hypothetical protein LO 99.7 1.6E-17 5.3E-22 95.5 8.7 77 40-122 22-105 (114)
182 2qfj_A FBP-interacting repress 99.7 2E-17 6.9E-22 104.8 9.6 82 42-123 27-108 (216)
183 2dnl_A Cytoplasmic polyadenyla 99.7 1.7E-17 6E-22 95.8 8.2 75 41-118 6-83 (114)
184 2pe8_A Splicing factor 45; RRM 99.7 1.1E-16 3.8E-21 91.1 11.1 82 41-122 6-93 (105)
185 3nmr_A Cugbp ELAV-like family 99.7 6.5E-17 2.2E-21 99.3 10.5 82 42-123 2-88 (175)
186 3pgw_A U1-A; protein-RNA compl 99.7 9.9E-17 3.4E-21 105.5 11.6 82 39-123 5-90 (282)
187 2hzc_A Splicing factor U2AF 65 99.7 5.6E-17 1.9E-21 89.3 8.6 72 41-119 4-86 (87)
188 2bz2_A Negative elongation fac 99.7 6.5E-17 2.2E-21 94.4 9.2 77 40-124 36-112 (121)
189 1wf0_A TDP-43, TAR DNA-binding 99.7 2E-17 7E-22 91.3 6.2 77 41-124 3-79 (88)
190 2cjk_A Nuclear polyadenylated 99.7 4.7E-17 1.6E-21 99.3 8.0 80 42-123 2-81 (167)
191 3u1l_A PRE-mRNA-splicing facto 99.7 1.3E-16 4.5E-21 102.5 8.7 78 40-123 131-229 (240)
192 2adc_A Polypyrimidine tract-bi 99.7 1.9E-16 6.4E-21 101.6 8.7 79 40-123 31-110 (229)
193 2dit_A HIV TAT specific factor 99.7 2.4E-15 8.3E-20 86.5 11.8 83 37-123 9-102 (112)
194 1fje_B Nucleolin RBD12, protei 99.7 4.8E-17 1.7E-21 100.1 4.3 83 39-123 9-91 (175)
195 3sde_A Paraspeckle component 1 99.7 1.4E-15 4.9E-20 99.2 11.3 78 40-123 19-96 (261)
196 1qm9_A Polypyrimidine tract-bi 99.6 3.7E-16 1.3E-20 97.9 6.9 76 43-123 3-79 (198)
197 3v4m_A Splicing factor U2AF 65 99.6 2.6E-15 8.9E-20 85.4 9.1 82 41-122 3-96 (105)
198 3ue2_A Poly(U)-binding-splicin 99.6 6.2E-15 2.1E-19 85.5 9.8 80 42-121 19-107 (118)
199 2g4b_A Splicing factor U2AF 65 99.6 9.6E-15 3.3E-19 89.4 9.3 75 42-123 3-88 (172)
200 1jmt_A Splicing factor U2AF 35 99.6 1.4E-15 4.9E-20 86.4 5.1 72 48-120 20-103 (104)
201 2yh0_A Splicing factor U2AF 65 99.6 1.5E-14 5.1E-19 90.4 8.8 75 42-123 3-88 (198)
202 3tht_A Alkylated DNA repair pr 99.5 1.1E-13 3.9E-18 93.1 10.1 78 38-121 13-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.6E-13 5.6E-18 77.2 8.2 65 53-124 27-91 (100)
204 3s6e_A RNA-binding protein 39; 99.5 1E-12 3.4E-17 75.7 9.7 78 40-121 4-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 7.6E-12 2.6E-16 68.4 8.9 75 40-123 4-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 1.5E-11 5.2E-16 71.1 8.0 77 39-121 14-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 5.2E-11 1.8E-15 65.4 5.9 75 39-122 11-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 4.7E-10 1.6E-14 71.4 8.2 66 56-121 142-211 (222)
209 4f25_A Polyadenylate-binding p 99.0 3.2E-10 1.1E-14 65.2 3.7 59 1-59 52-113 (115)
210 2l9w_A U4/U6 snRNA-associated- 98.9 2.6E-08 8.9E-13 55.9 8.8 72 42-119 20-96 (117)
211 2hvz_A Splicing factor, argini 98.5 4.7E-08 1.6E-12 54.6 2.5 52 1-52 44-100 (101)
212 3lqv_A PRE-mRNA branch site pr 98.3 6.4E-08 2.2E-12 55.3 0.3 56 1-69 54-109 (115)
213 2diu_A KIAA0430 protein; struc 98.1 5.4E-06 1.8E-10 45.7 4.3 35 1-35 53-87 (96)
214 1wey_A Calcipressin 1; structu 98.1 3.1E-05 1.1E-09 43.2 7.4 74 43-122 5-83 (104)
215 1whv_A Poly(A)-specific ribonu 98.1 4.9E-05 1.7E-09 41.8 7.9 57 40-105 13-69 (100)
216 2cqh_A IGF-II mRNA-binding pro 98.0 1.1E-05 3.8E-10 44.1 5.2 35 1-35 51-86 (93)
217 2dgx_A KIAA0430 protein; RRM d 98.0 6.9E-06 2.4E-10 45.3 4.1 33 1-33 59-91 (96)
218 1whw_A Hypothetical protein ri 98.0 1.1E-05 3.7E-10 44.6 4.9 36 1-36 57-92 (99)
219 2cqb_A Peptidyl-prolyl CIS-tra 98.0 1.4E-05 4.8E-10 44.4 5.2 36 1-36 61-96 (102)
220 3md1_A Nuclear and cytoplasmic 98.0 8.8E-06 3E-10 43.4 3.7 33 1-33 50-82 (83)
221 2dnp_A RNA-binding protein 14; 98.0 1.3E-05 4.5E-10 43.6 4.4 35 1-35 50-84 (90)
222 3p5t_L Cleavage and polyadenyl 97.9 4.2E-06 1.4E-10 45.6 2.3 35 1-35 52-86 (90)
223 1x5t_A Splicing factor 3B subu 97.9 1.7E-05 5.7E-10 43.6 4.8 35 1-35 55-89 (96)
224 2fc8_A NCL protein; structure 97.9 1.7E-05 5.7E-10 44.1 4.9 35 1-35 61-95 (102)
225 2fc9_A NCL protein; structure 97.9 1.9E-05 6.5E-10 43.8 5.1 35 1-35 60-94 (101)
226 2dgt_A RNA-binding protein 30; 97.9 1.6E-05 5.4E-10 43.4 4.7 35 1-35 51-85 (92)
227 2cpz_A CUG triplet repeat RNA- 97.9 2E-05 6.9E-10 44.8 4.9 35 1-35 74-108 (115)
228 2dnq_A RNA-binding protein 4B; 97.9 1.5E-05 5E-10 43.4 4.1 35 1-35 49-83 (90)
229 4a8x_A RNA-binding protein wit 97.9 1.1E-05 3.8E-10 43.5 3.5 33 1-33 54-86 (88)
230 2cpf_A RNA binding motif prote 97.9 1.9E-05 6.5E-10 43.5 4.4 35 1-35 57-91 (98)
231 2cq0_A Eukaryotic translation 97.9 2E-05 6.8E-10 43.9 4.5 35 1-35 64-98 (103)
232 1x5p_A Negative elongation fac 97.9 2.2E-05 7.4E-10 43.3 4.6 35 1-35 56-90 (97)
233 2dgu_A Heterogeneous nuclear r 97.9 2.7E-05 9.2E-10 43.4 5.0 36 1-36 52-87 (103)
234 1uw4_A UPF3X; nonsense mediate 97.9 0.00016 5.4E-09 39.5 7.8 68 44-111 2-71 (91)
235 2cpd_A Apobec-1 stimulating pr 97.9 2.3E-05 7.8E-10 43.4 4.6 34 1-34 58-91 (99)
236 2wbr_A GW182, gawky, LD47780P; 97.9 1.2E-05 4.2E-10 43.7 3.2 30 1-30 50-79 (89)
237 2cqi_A Nucleolysin TIAR; RNA r 97.9 2.7E-05 9.2E-10 43.3 4.7 35 1-35 62-96 (103)
238 2cpi_A CCR4-NOT transcription 97.9 1.5E-05 5.1E-10 45.1 3.6 33 1-33 70-102 (111)
239 3zzy_A Polypyrimidine tract-bi 97.8 2.4E-05 8.1E-10 45.7 4.4 36 1-36 73-110 (130)
240 1x5s_A Cold-inducible RNA-bind 97.8 1.7E-05 5.7E-10 44.1 3.6 35 1-35 61-95 (102)
241 2cq3_A RNA-binding protein 9; 97.8 2.6E-05 8.8E-10 43.4 4.4 35 1-35 62-96 (103)
242 3v4m_A Splicing factor U2AF 65 97.8 1.1E-05 3.7E-10 45.4 2.8 30 1-30 66-95 (105)
243 1x4a_A Splicing factor, argini 97.8 2.8E-05 9.5E-10 43.8 4.6 35 1-35 68-102 (109)
244 2e5j_A Methenyltetrahydrofolat 97.8 1.8E-05 6.2E-10 43.6 3.7 33 1-33 63-95 (97)
245 2do4_A Squamous cell carcinoma 97.8 1.9E-05 6.5E-10 43.7 3.7 34 1-34 65-98 (100)
246 2cpx_A Hypothetical protein FL 97.8 3E-05 1E-09 44.0 4.6 35 1-35 74-108 (115)
247 2d9p_A Polyadenylate-binding p 97.8 2.1E-05 7.2E-10 43.8 3.9 35 1-35 62-96 (103)
248 2dnz_A Probable RNA-binding pr 97.8 2.1E-05 7.2E-10 43.1 3.8 35 1-35 54-88 (95)
249 2fy1_A RNA-binding motif prote 97.8 3.4E-05 1.2E-09 44.0 4.9 35 1-35 55-89 (116)
250 2lxi_A RNA-binding protein 10; 97.8 3E-05 1E-09 42.3 4.4 34 1-34 51-85 (91)
251 3s6e_A RNA-binding protein 39; 97.8 1.5E-05 5.3E-10 45.5 3.3 30 1-30 62-91 (114)
252 2cpe_A RNA-binding protein EWS 97.8 3.2E-05 1.1E-09 43.7 4.7 35 1-35 72-106 (113)
253 3bs9_A Nucleolysin TIA-1 isofo 97.8 1.3E-05 4.4E-10 43.2 2.8 32 1-32 55-86 (87)
254 2pe8_A Splicing factor 45; RRM 97.8 1.4E-05 4.9E-10 44.9 3.0 31 1-31 63-93 (105)
255 2cqp_A RNA-binding protein 12; 97.8 2.1E-05 7.1E-10 43.4 3.7 32 1-32 64-95 (98)
256 2dit_A HIV TAT specific factor 97.8 2.8E-05 9.6E-10 44.1 4.2 33 1-33 71-103 (112)
257 2jvr_A Nucleolar protein 3; RN 97.8 1.9E-05 6.4E-10 44.9 3.5 32 1-32 74-105 (111)
258 1fjc_A Nucleolin RBD2, protein 97.8 2.2E-05 7.5E-10 43.1 3.7 34 1-34 60-93 (96)
259 1wwh_A Nucleoporin 35, nucleop 97.8 0.00044 1.5E-08 39.6 9.0 72 41-120 22-94 (119)
260 2x1f_A MRNA 3'-END-processing 97.8 2.1E-05 7.1E-10 43.3 3.3 35 1-35 51-85 (96)
261 1wg1_A KIAA1579 protein, homol 97.8 3.3E-05 1.1E-09 41.8 4.1 32 1-32 47-78 (88)
262 1x4g_A Nucleolysin TIAR; struc 97.8 3.7E-05 1.3E-09 43.2 4.4 35 1-35 68-102 (109)
263 2dgo_A Cytotoxic granule-assoc 97.8 4.7E-05 1.6E-09 43.2 4.8 35 1-35 64-98 (115)
264 2e5i_A Heterogeneous nuclear r 97.8 4.3E-05 1.5E-09 44.3 4.6 35 1-35 69-105 (124)
265 1x5u_A Splicing factor 3B subu 97.8 3.2E-05 1.1E-09 43.1 4.0 35 1-35 64-98 (105)
266 3ctr_A Poly(A)-specific ribonu 97.8 5.9E-05 2E-09 41.6 4.8 56 42-106 5-60 (101)
267 2dgw_A Probable RNA-binding pr 97.8 3.7E-05 1.3E-09 41.8 4.1 32 1-33 57-88 (91)
268 3mdf_A Peptidyl-prolyl CIS-tra 97.8 2.2E-05 7.4E-10 42.1 3.0 30 1-30 56-85 (85)
269 2a3j_A U1 small nuclear ribonu 97.7 2E-05 6.7E-10 45.9 3.0 33 1-33 79-111 (127)
270 2e44_A Insulin-like growth fac 97.7 2.6E-05 8.8E-10 42.8 3.4 33 1-33 61-93 (96)
271 3ue2_A Poly(U)-binding-splicin 97.7 2E-05 6.8E-10 45.3 2.8 30 1-30 78-107 (118)
272 1nu4_A U1A RNA binding domain; 97.7 3.1E-05 1.1E-09 42.5 3.5 33 1-33 58-90 (97)
273 1x4c_A Splicing factor, argini 97.7 5.9E-05 2E-09 42.4 4.7 35 1-35 57-96 (108)
274 3s8s_A Histone-lysine N-methyl 97.7 2.7E-05 9.1E-10 44.2 3.2 32 1-32 55-86 (110)
275 1sjr_A Polypyrimidine tract-bi 97.7 2.7E-05 9.4E-10 47.2 3.4 35 1-35 91-127 (164)
276 2cph_A RNA binding motif prote 97.7 4.7E-05 1.6E-09 42.6 4.3 35 1-35 65-100 (107)
277 1why_A Hypothetical protein ri 97.7 3.1E-05 1E-09 42.7 3.4 33 1-33 60-94 (97)
278 2jvo_A Nucleolar protein 3; nu 97.7 4.1E-05 1.4E-09 43.2 4.0 33 1-33 72-104 (108)
279 2cqc_A Arginine/serine-rich sp 97.7 3.1E-05 1.1E-09 42.3 3.3 31 1-31 64-94 (95)
280 1wf1_A RNA-binding protein RAL 97.7 3.7E-05 1.3E-09 43.4 3.6 35 1-35 69-103 (110)
281 2dnm_A SRP46 splicing factor; 97.7 2E-05 6.9E-10 43.9 2.5 35 1-35 62-96 (103)
282 2cpj_A Non-POU domain-containi 97.7 4.4E-05 1.5E-09 42.2 3.8 34 1-34 58-91 (99)
283 2xnq_A Nuclear polyadenylated 97.7 3.9E-05 1.3E-09 42.4 3.5 32 1-32 64-95 (97)
284 2kt5_A RNA and export factor-b 97.7 6.2E-05 2.1E-09 43.3 4.5 35 1-35 83-117 (124)
285 1fj7_A Nucleolin RBD1, protein 97.7 3.5E-05 1.2E-09 42.7 3.1 34 1-35 65-98 (101)
286 1p1t_A Cleavage stimulation fa 97.7 4.3E-05 1.5E-09 42.5 3.5 33 1-33 57-89 (104)
287 2dng_A Eukaryotic translation 97.7 5.9E-05 2E-09 41.9 4.0 34 1-35 63-96 (103)
288 2ek1_A RNA-binding protein 12; 97.7 3.7E-05 1.3E-09 42.0 3.1 30 1-30 64-93 (95)
289 2do0_A HnRNP M, heterogeneous 97.7 8.2E-05 2.8E-09 42.1 4.6 33 1-33 63-95 (114)
290 2dgv_A HnRNP M, heterogeneous 97.6 2.9E-05 9.8E-10 42.3 2.5 34 1-34 55-88 (92)
291 2dgs_A DAZ-associated protein 97.6 6.8E-05 2.3E-09 41.3 4.1 34 1-35 59-92 (99)
292 2bz2_A Negative elongation fac 97.6 5.9E-05 2E-09 43.4 3.7 34 1-34 80-113 (121)
293 1u6f_A Tcubp1, RNA-binding pro 97.6 0.00011 3.9E-09 43.0 5.0 35 1-35 91-125 (139)
294 2dnh_A Bruno-like 5, RNA bindi 97.6 6.8E-05 2.3E-09 41.8 3.7 35 1-35 63-100 (105)
295 2ywk_A Putative RNA-binding pr 97.6 4.4E-05 1.5E-09 41.7 2.7 30 1-30 64-93 (95)
296 1wi8_A EIF-4B, eukaryotic tran 97.6 9.6E-05 3.3E-09 41.1 4.2 34 1-35 64-97 (104)
297 2div_A TRNA selenocysteine ass 97.6 5.9E-05 2E-09 41.6 3.2 33 1-33 59-95 (99)
298 1x4h_A RNA-binding protein 28; 97.6 0.00012 4.2E-09 41.1 4.5 35 1-35 64-104 (111)
299 1whx_A Hypothetical protein ri 97.6 6.2E-05 2.1E-09 42.6 3.3 32 1-32 53-84 (111)
300 2e5g_A U6 snRNA-specific termi 97.6 7.5E-05 2.6E-09 40.8 3.4 34 1-35 52-85 (94)
301 2dhx_A Poly (ADP-ribose) polym 97.6 0.0026 9E-08 35.3 9.8 70 42-120 7-81 (104)
302 2kvi_A Nuclear polyadenylated 97.5 2.7E-05 9.3E-10 42.8 1.5 34 1-34 52-85 (96)
303 3egn_A RNA-binding protein 40; 97.5 0.0001 3.5E-09 43.4 4.1 34 1-34 99-132 (143)
304 2dnr_A Synaptojanin-1; RRM dom 97.5 6.4E-05 2.2E-09 41.0 2.7 30 1-31 56-85 (91)
305 3r27_A HnRNP L, heterogeneous 97.5 5.3E-05 1.8E-09 42.3 2.5 33 1-33 64-98 (100)
306 2dhg_A TRNA selenocysteine ass 97.5 8.5E-05 2.9E-09 41.3 3.3 35 1-35 58-93 (104)
307 2dgp_A Bruno-like 4, RNA bindi 97.5 0.00012 4E-09 40.8 3.8 35 1-35 62-99 (106)
308 1x4d_A Matrin 3; structural ge 97.5 7.2E-05 2.5E-09 41.9 2.8 35 1-35 59-95 (102)
309 2lkz_A RNA-binding protein 5; 97.5 7.5E-05 2.6E-09 41.2 2.7 31 1-31 60-94 (95)
310 3ns6_A Eukaryotic translation 97.5 6.8E-05 2.3E-09 41.6 2.6 31 1-31 61-92 (100)
311 2ytc_A PRE-mRNA-splicing facto 97.5 6.9E-05 2.4E-09 40.1 2.5 30 1-30 55-85 (85)
312 2nlw_A Eukaryotic translation 97.5 6.3E-05 2.1E-09 42.1 2.3 32 1-32 68-100 (105)
313 3ucg_A Polyadenylate-binding p 97.4 8.1E-05 2.8E-09 40.1 2.6 31 1-32 55-85 (89)
314 1h2v_Z 20 kDa nuclear CAP bind 97.4 0.00014 4.8E-09 43.5 3.9 35 1-35 88-122 (156)
315 3ex7_B RNA-binding protein 8A; 97.4 7.6E-05 2.6E-09 43.0 2.5 34 1-34 71-104 (126)
316 1wex_A Hypothetical protein (r 97.4 9.7E-05 3.3E-09 41.4 2.7 35 1-35 58-94 (104)
317 2dis_A Unnamed protein product 97.4 0.00019 6.3E-09 40.2 3.8 35 1-35 59-95 (109)
318 2cq2_A Hypothetical protein LO 97.3 0.00022 7.5E-09 40.7 3.5 32 1-32 70-106 (114)
319 2mss_A Protein (musashi1); RNA 97.3 0.00014 4.9E-09 37.8 2.5 28 1-29 48-75 (75)
320 2ki2_A SS-DNA binding protein 97.3 5.3E-05 1.8E-09 41.0 0.7 33 1-34 50-82 (90)
321 2ad9_A Polypyrimidine tract-bi 97.3 0.00038 1.3E-08 40.0 4.2 36 1-36 74-111 (119)
322 2cq1_A PTB-like protein L; RRM 97.3 0.00043 1.5E-08 38.5 4.3 35 1-35 58-94 (101)
323 2lcw_A RNA-binding protein FUS 96.4 4E-05 1.4E-09 43.6 0.0 35 1-35 64-98 (116)
324 1sjq_A Polypyrimidine tract-bi 97.3 0.00024 8.2E-09 39.9 3.1 35 1-35 59-95 (105)
325 2cqd_A RNA-binding region cont 97.2 0.00043 1.5E-08 39.2 4.2 32 1-33 66-97 (116)
326 1x4b_A Heterogeneous nuclear r 97.2 0.00059 2E-08 38.6 4.6 34 1-35 76-109 (116)
327 3n9u_C Cleavage and polyadenyl 97.2 0.00026 8.9E-09 42.5 3.2 31 1-31 106-136 (156)
328 1x4f_A Matrin 3; structural ge 97.2 0.00023 7.7E-09 40.5 2.7 35 1-35 69-105 (112)
329 2krb_A Eukaryotic translation 97.2 8.4E-05 2.9E-09 39.5 0.7 26 1-26 54-80 (81)
330 3p3d_A Nucleoporin 53; structu 97.1 0.00076 2.6E-08 39.2 4.4 77 43-121 7-97 (132)
331 2dh8_A DAZ-associated protein 97.1 0.00027 9.2E-09 39.3 2.5 34 1-35 65-98 (105)
332 1rk8_A CG8781-PA, CG8781-PA pr 97.1 0.00025 8.7E-09 42.8 2.5 34 1-34 121-154 (165)
333 1x4e_A RNA binding motif, sing 97.0 6.1E-05 2.1E-09 40.3 -0.9 30 1-30 54-83 (85)
334 2db1_A Heterogeneous nuclear r 97.0 0.00049 1.7E-08 39.3 2.7 30 1-31 68-97 (118)
335 3beg_B Splicing factor, argini 97.0 0.0007 2.4E-08 38.4 3.4 32 1-32 58-94 (115)
336 1wez_A HnRNP H', FTP-3, hetero 97.0 0.00074 2.5E-08 37.5 3.3 33 1-34 62-94 (102)
337 2hgl_A HNRPF protein, heteroge 96.9 0.00056 1.9E-08 40.2 2.7 30 1-31 95-124 (136)
338 2dnn_A RNA-binding protein 12; 96.9 0.0011 3.7E-08 37.4 3.7 29 1-30 63-91 (109)
339 2f3j_A RNA and export factor b 96.9 0.00046 1.6E-08 42.3 2.3 33 1-33 136-168 (177)
340 2l08_A Regulator of nonsense t 96.9 0.0021 7.2E-08 35.4 4.6 70 42-111 8-79 (97)
341 1wel_A RNA-binding protein 12; 96.9 0.00035 1.2E-08 40.1 1.5 30 1-31 74-103 (124)
342 2cq4_A RNA binding motif prote 96.9 0.00034 1.2E-08 39.5 1.3 31 1-32 74-104 (114)
343 1uaw_A Mouse-musashi-1; RNP-ty 96.8 0.0005 1.7E-08 35.8 1.8 28 1-29 49-76 (77)
344 2m2b_A RNA-binding protein 10; 96.8 0.00072 2.4E-08 39.2 2.5 34 1-35 74-111 (131)
345 2cpy_A RNA-binding protein 12; 96.8 0.0011 3.6E-08 37.5 3.0 31 1-32 64-94 (114)
346 1wg5_A Heterogeneous nuclear r 96.7 0.0014 4.6E-08 36.5 3.1 32 1-33 64-95 (104)
347 2lmi_A GRSF-1, G-rich sequence 96.6 0.00064 2.2E-08 38.0 1.4 30 1-31 62-91 (107)
348 3pq1_A Poly(A) RNA polymerase; 96.6 0.0016 5.5E-08 45.7 3.5 54 44-103 54-107 (464)
349 2cqg_A TDP-43, TAR DNA-binding 96.5 0.0048 1.6E-07 34.0 4.6 33 1-35 64-96 (103)
350 3q2s_C Cleavage and polyadenyl 96.5 0.00076 2.6E-08 43.0 1.4 31 1-31 119-149 (229)
351 3pgw_S U1-70K; protein-RNA com 96.5 0.0025 8.7E-08 44.4 3.9 33 1-33 151-183 (437)
352 1wey_A Calcipressin 1; structu 96.4 0.0032 1.1E-07 35.1 3.3 33 1-33 53-85 (104)
353 1s79_A Lupus LA protein; RRM, 96.4 0.00096 3.3E-08 37.2 1.2 29 1-30 59-87 (103)
354 2hgn_A Heterogeneous nuclear r 96.4 0.00089 3E-08 39.5 1.0 33 1-34 93-125 (139)
355 3u1l_A PRE-mRNA-splicing facto 96.4 0.0017 6E-08 41.7 2.4 33 1-33 186-230 (240)
356 2d9o_A DNAJ (HSP40) homolog, s 96.4 0.0043 1.5E-07 34.4 3.6 32 1-34 61-92 (100)
357 1iqt_A AUF1, heterogeneous nuc 96.3 0.0013 4.4E-08 34.0 1.4 28 1-29 48-75 (75)
358 2i2y_A Fusion protein consists 95.7 0.0039 1.3E-07 36.8 1.7 41 81-122 9-50 (150)
359 2dha_A FLJ20171 protein; RRM d 95.7 0.0051 1.8E-07 35.4 2.0 29 1-30 75-103 (123)
360 2kn4_A Immunoglobulin G-bindin 95.2 0.03 1E-06 33.1 4.3 33 73-107 3-35 (158)
361 2dnl_A Cytoplasmic polyadenyla 95.2 0.072 2.5E-06 29.8 5.7 25 1-27 59-83 (114)
362 2xs2_A Deleted in azoospermia- 94.7 0.0036 1.2E-07 34.4 -0.8 31 1-33 57-87 (102)
363 2l9w_A U4/U6 snRNA-associated- 94.2 0.054 1.8E-06 30.5 3.3 27 1-27 69-95 (117)
364 1x5o_A RNA binding motif, sing 94.1 0.012 4E-07 33.0 0.5 20 1-20 73-92 (114)
365 3d45_A Poly(A)-specific ribonu 93.7 0.44 1.5E-05 33.9 8.0 56 42-106 439-494 (507)
366 1wf0_A TDP-43, TAR DNA-binding 92.6 0.12 4.2E-06 27.2 3.0 33 1-35 49-81 (88)
367 3tht_A Alkylated DNA repair pr 92.5 0.079 2.7E-06 35.9 2.7 64 1-67 63-132 (345)
368 2j8a_A Histone-lysine N-methyl 91.7 0.083 2.8E-06 30.8 1.7 24 7-30 69-94 (136)
369 3d2w_A TAR DNA-binding protein 86.7 0.55 1.9E-05 24.9 2.6 30 1-34 55-86 (89)
370 3p3d_A Nucleoporin 53; structu 85.9 0.67 2.3E-05 26.9 2.7 27 1-28 69-95 (132)
371 2dhx_A Poly (ADP-ribose) polym 85.1 0.87 3E-05 25.3 2.8 46 1-56 54-99 (104)
372 1ufw_A Synaptojanin 2; RNP dom 80.1 2.1 7.2E-05 23.3 3.1 17 14-30 77-93 (95)
373 1wwh_A Nucleoporin 35, nucleop 77.3 1.5 5E-05 25.0 2.0 27 1-28 66-93 (119)
374 4e8u_A Putative uncharacterize 63.9 22 0.00075 21.6 6.0 48 44-94 13-71 (172)
375 4eyt_A Telomerase associated p 54.7 23 0.0008 19.0 7.8 57 41-105 10-66 (129)
376 2g0c_A ATP-dependent RNA helic 52.3 6.5 0.00022 19.9 1.3 34 87-121 42-75 (76)
377 3fut_A Dimethyladenosine trans 35.7 51 0.0018 21.3 3.9 27 44-71 111-137 (271)
378 3tqs_A Ribosomal RNA small sub 34.0 91 0.0031 19.8 5.5 26 46-71 99-124 (255)
379 2lfv_A Protein DAMX; cell divi 39.0 9.2 0.00032 21.2 0.0 17 1-17 71-87 (106)
380 1wgn_A UBAP1, ubiquitin associ 30.1 39 0.0013 16.8 2.0 14 3-16 32-45 (63)
381 3uzu_A Ribosomal RNA small sub 29.5 27 0.00093 22.7 1.8 28 44-71 115-142 (279)
382 2knz_A Ubiquilin-4; cytoplasm, 26.6 57 0.0019 15.3 2.2 16 1-16 23-38 (53)
383 3lpe_A Putative transcription 26.2 54 0.0019 17.3 2.4 25 84-108 49-73 (92)
384 3ftd_A Dimethyladenosine trans 22.6 75 0.0026 20.1 2.9 25 44-68 96-120 (249)
385 1uzc_A Hypothetical protein FL 21.4 65 0.0022 16.3 2.0 14 1-14 11-24 (71)
386 1qyr_A KSGA, high level kasuga 21.0 96 0.0033 19.7 3.2 23 45-67 92-114 (252)
387 1gcc_A Ethylene responsive ele 20.7 51 0.0018 16.1 1.5 12 1-12 33-44 (63)
388 2jy5_A Ubiquilin-1; UBA, alter 20.7 79 0.0027 14.7 2.3 16 1-16 24-39 (52)
389 2rf4_B DNA-directed RNA polyme 20.7 1.1E+02 0.0037 16.3 2.7 26 42-67 18-43 (87)
390 1ik9_C DNA ligase IV; DNA END 20.7 68 0.0023 13.9 2.2 15 53-67 20-34 (37)
No 1
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.6e-26 Score=140.34 Aligned_cols=119 Identities=29% Similarity=0.660 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|.+.++|.+|+..+||..+.|+.+.+.++..... ....+.++|||+|||..+++++|+++|++||.|..+.+..+..
T Consensus 48 f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 124 (166)
T 3md3_A 48 YHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ---SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ 124 (166)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC---CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTT
T ss_pred eCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC---CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 6789999999999999999999999999876543 2345678999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
+|.++|+|||+|.+.++|.+|+..|||..++|+.|+|.++++
T Consensus 125 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 125 TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999999999999999999999864
No 2
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=1.2e-25 Score=141.03 Aligned_cols=123 Identities=21% Similarity=0.430 Sum_probs=109.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCC---------------CCCCCCCcEEEEcCCCCCCCHHHHHHHHh
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL---------------PLYAETDFKLFVGNLSWSVTTESLTQAFQ 65 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~---------------~~~~~~~~~l~i~~lp~~~~~~~l~~~f~ 65 (125)
|.+.++|++|+ .+||..+.|++|+|.++....... .....+.++|||+|||..+++++|+++|+
T Consensus 58 F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 136 (198)
T 2yh0_A 58 FRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT 136 (198)
T ss_dssp ESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH
T ss_pred eCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 67899999999 799999999999999876543221 11224668999999999999999999999
Q ss_pred cCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 033218 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 66 ~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
+||.|..+.+..+..+|.++|+|||+|.+.++|.+|+..|+|..+.|+.|.|.++.++.
T Consensus 137 ~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 137 SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp TBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999998899999999999999999999999999999999999999998763
No 3
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=2e-25 Score=137.35 Aligned_cols=115 Identities=23% Similarity=0.464 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|.+.++|.+|+ .+||..+.|++|++.++..... .....+|||+|||..+++++|+++|++||.|..+.+..+..
T Consensus 58 f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~-----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 131 (172)
T 2g4b_A 58 FRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQP-----LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 131 (172)
T ss_dssp ESSHHHHHHHG-GGTTCEETTEECEEECCSSCCC-----CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT
T ss_pred eCCHHHHHHHH-HhCCcEecCceeeecCCcccCC-----CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC
Confidence 68999999999 7999999999999998765432 23478899999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
+|.++|+|||+|.+.++|.+|+..|||..++|+.|.|.+|.
T Consensus 132 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 132 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999999999999999999873
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.94 E-value=3.9e-25 Score=135.52 Aligned_cols=115 Identities=31% Similarity=0.528 Sum_probs=106.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|.+.++|.+|++.++|..+.|++|.|.++.+... ..+.++|||+|||..+++++|+++|++||.|..+.+..+..
T Consensus 52 f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~-----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 52 FTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE-----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS-----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred ECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc-----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 6799999999999999999999999999876542 34678999999999999999999999999999999999987
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCeeCC--eEEEEEec
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVSLA 120 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g--~~i~v~~~ 120 (125)
++.++|+|||+|.+.++|.+|+..|+|..+.| +.|+|.+|
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 89999999999999999999999999999977 89999886
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.93 E-value=1.2e-25 Score=142.72 Aligned_cols=124 Identities=21% Similarity=0.385 Sum_probs=109.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCC------CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP------LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGAR 74 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~------~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~ 74 (125)
|.+.++|.+|++.+||..+.|+.|.|.++........ ......++|||+|||.++++++|+++|+.||.|..+.
T Consensus 77 f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~ 156 (216)
T 2qfj_A 77 YEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSAT 156 (216)
T ss_dssp ESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEE
T ss_pred eCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEE
Confidence 6899999999999999999999999998765432211 1234568999999999999999999999999999999
Q ss_pred EeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 033218 75 VLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 75 ~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
+..+..+|.++|+|||+|.+.++|.+|+..||+..++|+.|.|.++.++.
T Consensus 157 i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 157 LARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred EEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 99998899999999999999999999999999999999999999988763
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.93 E-value=6.7e-25 Score=134.19 Aligned_cols=115 Identities=29% Similarity=0.545 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|.+.++|.+|++.+||..+.|++|+|.++.+... ..+..+|||+|||..+++++|+++|++||.+..+.+..+..
T Consensus 51 f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~-----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 51 YIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA-----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG-----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred ECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc-----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 6899999999999999999999999999875532 33568899999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeE--EEEEec
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRA--MRVSLA 120 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~--i~v~~~ 120 (125)
+|.++|+|||+|.+.++|.+|++.|||..+.|+. |.|.||
T Consensus 126 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 126 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 8999999999999999999999999999999864 888875
No 7
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=9.6e-25 Score=134.73 Aligned_cols=114 Identities=22% Similarity=0.449 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|.+.++|.+|++ +||..+.|++|+|.++...... ...+.++|||+|||.++++++|+++|++||.|..+ ..
T Consensus 61 f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~---~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~ 131 (175)
T 1fje_B 61 FESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSK---KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQ 131 (175)
T ss_dssp ESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCS---TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CS
T ss_pred ECCHHHHHHHHh-cCCCEeCCeEEEEecCCCcccc---ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cC
Confidence 689999999995 9999999999999998765432 23467899999999999999999999999987655 46
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
++.++|+|||+|.+.++|.+|+..|+|..+.|+.|.|.++.++
T Consensus 132 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 7889999999999999999999999999999999999999876
No 8
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.93 E-value=2.8e-25 Score=134.45 Aligned_cols=118 Identities=23% Similarity=0.324 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHhc-CCCccCCeEEEEeccCCCC-----------CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCC
Q 033218 1 MSTVEDCNAVIENL-DGREYLGRILRVNFSDKPK-----------PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYG 68 (125)
Q Consensus 1 f~~~~~a~~a~~~~-~~~~~~~~~i~v~~~~~~~-----------~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g 68 (125)
|.+.++|.+|++++ ||..+.| .+.+.++.... ........+.++|||+|||.++++++|+++|++||
T Consensus 20 ~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G 98 (150)
T 2i2y_A 20 AVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYG 98 (150)
T ss_dssp CSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHS
T ss_pred ecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 67899999999999 9999999 99999876421 12233445678999999999999999999999999
Q ss_pred CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 033218 69 NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 69 ~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
.|..+.++.+ ++|||||+|.+.++|..|+..|+|..+.|+.|+|.++.+++
T Consensus 99 ~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 99 PLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999998765 57899999999999999999999999999999999999876
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.93 E-value=3.3e-24 Score=134.33 Aligned_cols=122 Identities=20% Similarity=0.336 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCC-CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP-LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDG 79 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~-~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~ 79 (125)
|.+.++|.+|+.. ++..+.|+.|.+.++........ ......++|||+|||.++++++|+++|+.||.|..+.+..+.
T Consensus 62 f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 62 YATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp ESSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred eCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 6889999999985 99999999999999876544332 223466899999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 033218 80 ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 80 ~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
.+|.++|+|||+|.+.++|.+|+.. ++..+.|+.|.|.++.++.
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 8899999999999999999999986 7999999999999988763
No 10
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=1.4e-24 Score=143.70 Aligned_cols=122 Identities=21% Similarity=0.311 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCC--CCCCCcEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEee
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL--YAETDFKLFVGNLSWS-VTTESLTQAFQEYGNVVGARVLY 77 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~--~~~~~~~l~i~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~ 77 (125)
|.+.++|.+|+..+||..+.|++|.|.++.+....... ...+.++|||+|||.. +++++|+++|+.||.|..+.++.
T Consensus 166 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~ 245 (292)
T 2ghp_A 166 VTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA 245 (292)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCS
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEe
Confidence 78999999999999999999999999998766544322 4457789999999999 99999999999999999999988
Q ss_pred cCC-CCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 78 DGE-SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 78 ~~~-~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+.. +|.++|+|||+|.+.++|.+|+ .|+|..+.|+.|.|.++.++
T Consensus 246 ~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 246 GQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred cCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 754 4889999999999999999999 99999999999999999886
No 11
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=2.5e-24 Score=121.88 Aligned_cols=82 Identities=34% Similarity=0.565 Sum_probs=78.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
..+++|||+|||.++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35678999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CC
Q 033218 121 QG 122 (125)
Q Consensus 121 ~~ 122 (125)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 86
No 12
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.92 E-value=1.9e-24 Score=137.50 Aligned_cols=118 Identities=25% Similarity=0.468 Sum_probs=104.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|.+.++|.+|+..+|+..+.|+.+++.++...... ......+|||+|||.++++++|+++|+.||.|..+.++++.
T Consensus 64 F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~- 139 (213)
T 4f02_A 64 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL---RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE- 139 (213)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHH---HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-
T ss_pred eCCHHHHHHHHHHhhhhhcCCcccccccccccccc---cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-
Confidence 68899999999999999999999999987654322 12245689999999999999999999999999999999884
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+.++|+|||+|.+.++|.+|++.|||..++|+.|.|.++.++
T Consensus 140 -~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 140 -NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp -TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred -CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 347999999999999999999999999999999999998765
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=9.2e-24 Score=139.24 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCC-CHHHHHHHHhcCCCeeEEEEeecC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV-TTESLTQAFQEYGNVVGARVLYDG 79 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~-~~~~l~~~f~~~g~i~~~~~~~~~ 79 (125)
|.+.++|.+|+..+||..+.|++|.|.++.+.... ....+.++|||+|||.++ ++++|+++|+.||.|..+.+..+
T Consensus 144 f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~--~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~- 220 (284)
T 3smz_A 144 YMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT--PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG- 220 (284)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC--TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC-
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC--cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC-
Confidence 67899999999999999999999999998765432 234567899999999995 99999999999999999999888
Q ss_pred CCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 033218 80 ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 80 ~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
.+|.++|+|||+|.+.++|.+|+..|+|..+.|+.|.|.++.++.
T Consensus 221 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 221 QDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp SSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 478999999999999999999999999999999999999998764
No 14
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=9.3e-24 Score=128.66 Aligned_cols=124 Identities=23% Similarity=0.381 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEec-------cC-CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNF-------SD-KPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG 72 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~-------~~-~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~ 72 (125)
|.+.++|++|+..+++....+....... .. .............++|||+|||.++++++|+++|++||.|..
T Consensus 20 f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~ 99 (158)
T 2kn4_A 20 AVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD 99 (158)
T ss_dssp CSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEE
T ss_pred HHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE
Confidence 6889999999998876443333222221 11 111122233456789999999999999999999999999999
Q ss_pred EEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 033218 73 ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 73 ~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
+.++.+..+|.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++++++
T Consensus 100 ~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 100 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp EECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999998899999999999999999999999999999999999999988653
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.91 E-value=5.7e-23 Score=135.45 Aligned_cols=112 Identities=27% Similarity=0.395 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|.+.++|.+|+..+||..+.|++|.+.++. +.++|||+|||.++++++|+++|+.||.|..+.++.+..
T Consensus 64 f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 132 (284)
T 3smz_A 64 LLNGEQAEAAINAFHQSRLRERELSVQLQP-----------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER 132 (284)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECC-----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred eCCHHHHHHHHHHcCCCeeCCeEEEEEecC-----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC
Confidence 689999999999999999999999999843 346899999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+|.++|+|||+|.+.++|.+|+..|++..+.|+.|.|.++.++
T Consensus 133 ~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 133 TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 9999999999999999999999999999999999999998764
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=8.3e-23 Score=134.55 Aligned_cols=76 Identities=21% Similarity=0.380 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC-CeEEEEEec
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE-GRAMRVSLA 120 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~-g~~i~v~~~ 120 (125)
+.++|||+|||..+++++|+++|++||.|..+.+..+. +|+|||+|.+.++|.+|+..|||..+. |+.|+|.|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 56789999999999999999999999999999888552 579999999999999999999999999 999999998
Q ss_pred CC
Q 033218 121 QG 122 (125)
Q Consensus 121 ~~ 122 (125)
+.
T Consensus 281 kk 282 (282)
T 3pgw_A 281 KK 282 (282)
T ss_pred cC
Confidence 63
No 17
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.90 E-value=3.5e-23 Score=131.02 Aligned_cols=118 Identities=18% Similarity=0.217 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCC--------------------------------CCCCCCcEEEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP--------------------------------LYAETDFKLFV 48 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~--------------------------------~~~~~~~~l~i 48 (125)
|.+.++|++|++.|||..+.|++|+|.++........ ....++.+|||
T Consensus 49 f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v 128 (205)
T 3tyt_A 49 MADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHF 128 (205)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEE
T ss_pred ECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEE
Confidence 6899999999999999999999999999754321000 01134678999
Q ss_pred cCCCCCCCHHHHHHHHhcCCCe--eEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCe----EEEEEec
Q 033218 49 GNLSWSVTTESLTQAFQEYGNV--VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR----AMRVSLA 120 (125)
Q Consensus 49 ~~lp~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~----~i~v~~~ 120 (125)
+|||.++++++|+++|++||.| ..+.+..+. +..+|+|||+|.+.++|..|+..|||..+.|. .+.|.++
T Consensus 129 ~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 129 FNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9999999999999999999998 788877663 45569999999999999999999999999766 3555543
No 18
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.90 E-value=4.2e-23 Score=126.67 Aligned_cols=123 Identities=24% Similarity=0.369 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHhcCCCccC--CeEEEEeccCCC---------------CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHH
Q 033218 1 MSTVEDCNAVIENLDGREYL--GRILRVNFSDKP---------------KPKLPLYAETDFKLFVGNLSWSVTTESLTQA 63 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~--~~~i~v~~~~~~---------------~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~ 63 (125)
|++.++|+.|+..+++.... |+.....++... ....+....+.++|||+|||..+++++|+.+
T Consensus 13 ~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~ 92 (165)
T 1rk8_A 13 FEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEK 92 (165)
T ss_dssp -----------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHHHH
T ss_pred hhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 56788999999999987665 555544432110 1111223345688999999999999999999
Q ss_pred HhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 64 FQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 64 f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
|++||.|..+.+..+..+|.++|||||+|.+.++|..|+..|++..+.|+.|.|.++.++
T Consensus 93 F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 93 FCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred hhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 999999999999999889999999999999999999999999999999999999998754
No 19
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.90 E-value=4.4e-23 Score=127.01 Aligned_cols=116 Identities=26% Similarity=0.388 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHhcCCCccC---CeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEee
Q 033218 1 MSTVEDCNAVIENLDGREYL---GRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLY 77 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~ 77 (125)
|.+.++|++|++.+||..+. ++.+.+.++..... ......+|||+|||.++++++|+++|++||.|..+.+..
T Consensus 54 f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~ 129 (175)
T 3nmr_A 54 FYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN----NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR 129 (175)
T ss_dssp ESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC----SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred ECCHHHHHHHHHHhcCcEEccCCccceEEcccccccc----ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEE
Confidence 67999999999999998876 57788877654432 234667999999999999999999999999999999998
Q ss_pred cCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC---CeEEEEEecC
Q 033218 78 DGESGRSRGYGFVCYSTKAEMETALESLNGVELE---GRAMRVSLAQ 121 (125)
Q Consensus 78 ~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~---g~~i~v~~~~ 121 (125)
+ .+|.++|+|||+|.+.++|.+|+..|||..+. ++.|.|.|+.
T Consensus 130 ~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 130 G-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp C-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred C-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 8 46889999999999999999999999998775 4899999874
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.90 E-value=2.9e-23 Score=130.46 Aligned_cols=118 Identities=23% Similarity=0.363 Sum_probs=101.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCC------------------------------CCCCCCcEEEEcC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP------------------------------LYAETDFKLFVGN 50 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~------------------------------~~~~~~~~l~i~~ 50 (125)
|.+.++|.+|+..+||..+.|++|+|.++.......+ ...+++++|||+|
T Consensus 48 f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~n 127 (198)
T 1qm9_A 48 MADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSN 127 (198)
T ss_dssp CTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECC
T ss_pred ECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeC
Confidence 7899999999999999999999999998764421110 1123578999999
Q ss_pred CCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC-CeEEEEEecCCC
Q 033218 51 LSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE-GRAMRVSLAQGR 123 (125)
Q Consensus 51 lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~-g~~i~v~~~~~~ 123 (125)
||..+++++|+++|++|| .|..+.+... .+|+|||+|.+.++|.+|+..|+|..+. |+.|+|.|++++
T Consensus 128 l~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 128 IPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999999999999999 9999988654 2689999999999999999999999999 999999999875
No 21
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.90 E-value=6.9e-23 Score=131.56 Aligned_cols=118 Identities=23% Similarity=0.363 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCC------------------------------CCCCCCcEEEEcC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP------------------------------LYAETDFKLFVGN 50 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~------------------------------~~~~~~~~l~i~~ 50 (125)
|.+.++|.+|++.+||..+.|+.|.|.++........ ....+.++|||+|
T Consensus 79 F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 158 (229)
T 2adc_A 79 MADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSN 158 (229)
T ss_dssp ESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEEC
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeC
Confidence 6899999999999999999999999998864421110 0123468999999
Q ss_pred CCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC-CeEEEEEecCCC
Q 033218 51 LSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE-GRAMRVSLAQGR 123 (125)
Q Consensus 51 lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~-g~~i~v~~~~~~ 123 (125)
||..+++++|+++|++|| .|..+.+... .+++|||+|.+.++|.+|+..|+|..+. |+.|+|.|++++
T Consensus 159 lp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 159 IPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999999999999999 9999888543 3679999999999999999999999999 999999999875
No 22
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.90 E-value=1e-22 Score=117.27 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=79.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
+.+.++|||+|||..+++++|+++|++||.|..+.++++..++.++|||||+|.+.++|++|+..|||..+.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 033218 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+..+
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8754
No 23
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.89 E-value=6.8e-24 Score=129.90 Aligned_cols=115 Identities=19% Similarity=0.443 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|.+.++|.+|+.. +..+.|+.|.+.++.+... ..+..+|||+|||.++++++|+++|++||.|..+.+..+..
T Consensus 52 f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~-----~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~ 124 (167)
T 2cjk_A 52 FEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDE-----QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKD 124 (167)
T ss_dssp ESSTHHHHHHHHS--CCEETTEECCCEECCCHHH-----HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSS
T ss_pred EccHHHHHHHHhc--ccccCCeEcccccccchhh-----ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCC
Confidence 6789999999994 6789999999988754321 23467899999999999999999999999999999999888
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+|.++|+|||+|.+.++|.+|++ +++..+.|+.|.|.++.++
T Consensus 125 ~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 125 TGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 89999999999999999999998 8999999999999999886
No 24
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=5.7e-22 Score=112.27 Aligned_cols=87 Identities=21% Similarity=0.437 Sum_probs=80.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 37 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 37 ~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
.....+.++|||+|||..+++++|+++|++||.|..+.+..+. ++.++++|||+|.+.++|++|+..|++..+.|+.|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445567899999999999999999999999999999999996 899999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 033218 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.+++++.
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99998875
No 25
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.89 E-value=5e-22 Score=108.84 Aligned_cols=82 Identities=35% Similarity=0.766 Sum_probs=78.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
+++|||+|||.++++++|+++|++||.|..+.++.+..++.++|+|||+|.+.++|++|+..|+|..+.|+.|+|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999988
Q ss_pred CC
Q 033218 123 RR 124 (125)
Q Consensus 123 ~~ 124 (125)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-23 Score=116.31 Aligned_cols=82 Identities=18% Similarity=0.343 Sum_probs=75.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhC-CCeeCCeEEEEEec
Q 033218 43 DFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN-GVELEGRAMRVSLA 120 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~-~~~~~g~~i~v~~~ 120 (125)
+.+|||+|||.++++++|+++|++|| .|..+++++++.+|.++|||||+|.+.++|++|++.++ +..+.|+.|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999998999999999999999999999999875 56799999999999
Q ss_pred CCCC
Q 033218 121 QGRR 124 (125)
Q Consensus 121 ~~~~ 124 (125)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8764
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=3.2e-22 Score=110.55 Aligned_cols=83 Identities=37% Similarity=0.685 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.++|||+|||.++++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCC
Q 033218 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 876
No 28
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.89 E-value=6.2e-22 Score=113.64 Aligned_cols=88 Identities=35% Similarity=0.682 Sum_probs=82.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 37 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 37 ~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
.....+.++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|+|||+|.+.++|..|++.|+|..+.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44456779999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 033218 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.+++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998875
No 29
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.2e-21 Score=109.85 Aligned_cols=85 Identities=34% Similarity=0.545 Sum_probs=80.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
..+.+.++|||+|||..+++++|+++|++||.|..+.+..++.++.++++|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44567789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EecCC
Q 033218 118 SLAQG 122 (125)
Q Consensus 118 ~~~~~ 122 (125)
.++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99875
No 30
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1e-21 Score=111.74 Aligned_cols=86 Identities=20% Similarity=0.403 Sum_probs=81.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.++.+..++.++++|||+|.+.++|++|+..|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34578999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 033218 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.++.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998764
No 31
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=5.5e-22 Score=109.16 Aligned_cols=82 Identities=33% Similarity=0.571 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||.++++++|+++|++||.|..+.++.+..++.++++|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cC
Q 033218 120 AQ 121 (125)
Q Consensus 120 ~~ 121 (125)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 32
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=2.4e-21 Score=112.23 Aligned_cols=87 Identities=37% Similarity=0.643 Sum_probs=81.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|+.||.|..+.+..+..++.+++||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34457799999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++.++.
T Consensus 90 ~~a~~~~ 96 (115)
T 2dgo_A 90 NWATRKP 96 (115)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9988653
No 33
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.88 E-value=6.5e-22 Score=111.28 Aligned_cols=83 Identities=22% Similarity=0.521 Sum_probs=78.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
++++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|+.|+..|+|..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCC
Q 033218 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
+++
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.88 E-value=1.2e-21 Score=127.95 Aligned_cols=111 Identities=32% Similarity=0.397 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 80 (125)
|.+.++|.+|+..+||..+.|+.|.|.++.+ +.+|||+|||..+++++|+++|+.||.|..+.++.+ .
T Consensus 65 f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~ 132 (261)
T 3sde_A 65 LESRTLAEIAKAELDGTILKSRPLRIRFATH-----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-D 132 (261)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEECCC-----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-T
T ss_pred ECCHHHHHHHHHHcCCcEECCceeEeeeccc-----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-C
Confidence 7899999999999999999999999999763 468999999999999999999999999999999999 6
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHhCC-CeeC---CeEEEEEecCCC
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESLNG-VELE---GRAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l~~-~~~~---g~~i~v~~~~~~ 123 (125)
+|.++|+|||+|.+.++|.+|+..|++ ..+. ++.|.|.++.+.
T Consensus 133 ~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 133 RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 899999999999999999999999954 4444 889999987653
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=6e-22 Score=111.15 Aligned_cols=85 Identities=36% Similarity=0.673 Sum_probs=80.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
+.++++|||+|||..+++++|+++|++||.|..+.+..+..++.++++|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 98764
No 36
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=110.82 Aligned_cols=86 Identities=24% Similarity=0.402 Sum_probs=80.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCC
Q 033218 36 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG--------ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG 107 (125)
Q Consensus 36 ~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~ 107 (125)
....+.+.++|||+|||.++++++|+++|++||.|.. +.++.++.+|.++|+|||+|.+.++|++|++.|+|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3445567899999999999999999999999999999 99999988999999999999999999999999999
Q ss_pred CeeCCeEEEEEecC
Q 033218 108 VELEGRAMRVSLAQ 121 (125)
Q Consensus 108 ~~~~g~~i~v~~~~ 121 (125)
..+.|+.|+|.+++
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999874
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=9.3e-22 Score=112.29 Aligned_cols=87 Identities=26% Similarity=0.458 Sum_probs=81.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++|+..|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567799999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++.+++
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 9988764
No 38
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=1.9e-21 Score=112.75 Aligned_cols=86 Identities=28% Similarity=0.526 Sum_probs=80.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+..++.+++||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34466899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 033218 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
+++++.
T Consensus 101 ~a~~~~ 106 (115)
T 2cpz_A 101 LKRSKN 106 (115)
T ss_dssp CCCCSC
T ss_pred EcCCCC
Confidence 988763
No 39
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-21 Score=110.66 Aligned_cols=85 Identities=24% Similarity=0.432 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+..++.+++||||+|.+.++|++|+..|++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999987899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 88764
No 40
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.5e-21 Score=109.26 Aligned_cols=84 Identities=27% Similarity=0.517 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++++|||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34557789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EecC
Q 033218 118 SLAQ 121 (125)
Q Consensus 118 ~~~~ 121 (125)
.+++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9975
No 41
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=110.25 Aligned_cols=84 Identities=25% Similarity=0.557 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.++.+..++.+++||||+|.+.++|++|+. +++..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999998889999999999999999999998 999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 98764
No 42
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=8.2e-22 Score=110.80 Aligned_cols=84 Identities=26% Similarity=0.536 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEE-EEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA-RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
.++++|||+|||..+++++|+++|++||.|..+ .++.++.++.+++||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999888999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 88764
No 43
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.88 E-value=1.1e-22 Score=121.00 Aligned_cols=117 Identities=27% Similarity=0.489 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC
Q 033218 2 STVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES 81 (125)
Q Consensus 2 ~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~ 81 (125)
++...+..|+..++|-...|+. ...+.. .+....+.++|||+|||..+++++|+++|+.||.|..+.++.+..+
T Consensus 12 ~~~~~~~~a~~~~~g~~~~g~~-~~~~~~-----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~ 85 (135)
T 2lea_A 12 SGLVPRGSHMASMTGGQQMGRG-SMSYGR-----PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT 85 (135)
T ss_dssp ------------------------CCSCC-----SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS
T ss_pred cCCCchhhhhhhccCCCCCCCC-CCCcCC-----CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC
Confidence 3455677788888887766654 222222 1233456789999999999999999999999999999999998888
Q ss_pred CCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 033218 82 GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 82 ~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
+.++|+|||+|.+.++|++|+..|++..+.|+.|+|.++++++
T Consensus 86 g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 86 KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp SSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999988653
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=3.4e-22 Score=112.11 Aligned_cols=82 Identities=21% Similarity=0.424 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCC--eeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCC----eeCCeE
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGN--VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV----ELEGRA 114 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~----~~~g~~ 114 (125)
....+|||+|||+++++++|+++|++||. +..+++++++.+|.++|||||+|.+.++|++|++.|++. .++|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45679999999999999999999999995 678999999999999999999999999999999999985 589999
Q ss_pred EEEEecCC
Q 033218 115 MRVSLAQG 122 (125)
Q Consensus 115 i~v~~~~~ 122 (125)
|.|.||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
No 45
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.3e-21 Score=111.79 Aligned_cols=85 Identities=31% Similarity=0.497 Sum_probs=80.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..++++|||+|||..+++++|+++|+.||.|..+.+..+..+|.++|+|||+|.+.++|++|+..|++..+.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 88663
No 46
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.2e-21 Score=111.76 Aligned_cols=87 Identities=26% Similarity=0.497 Sum_probs=81.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhC------CCeeC
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN------GVELE 111 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~------~~~~~ 111 (125)
....+.++|||+|||..+++++|+++|.+||.|..+.++++..++.+++||||+|.+.++|.+|+..++ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345577899999999999999999999999999999999998889999999999999999999999999 99999
Q ss_pred CeEEEEEecCCCC
Q 033218 112 GRAMRVSLAQGRR 124 (125)
Q Consensus 112 g~~i~v~~~~~~~ 124 (125)
|+.|.|.++.++.
T Consensus 90 g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GRQLKVDLAVTRD 102 (111)
T ss_dssp SCEEEEECCCCCC
T ss_pred CEEEEEEECCCCc
Confidence 9999999988763
No 47
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=1.6e-21 Score=112.20 Aligned_cols=86 Identities=26% Similarity=0.460 Sum_probs=80.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|+|||+|.+.++|..|+..|+|..+.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 033218 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 987653
No 48
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=2.2e-21 Score=112.50 Aligned_cols=81 Identities=32% Similarity=0.604 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+.+|||+|||.++++++|+++|++||.|..+.++++. +.++|||||+|.+.++|++|+..|++..+.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999884 3478999999999999999999999999999999999987
Q ss_pred CCC
Q 033218 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
No 49
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.7e-21 Score=109.85 Aligned_cols=87 Identities=22% Similarity=0.342 Sum_probs=79.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
..+..++|||+|||..+++++|+++|.+||.|..+.++.+..++.++++|||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999877778887889999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 033218 119 LAQGRRS 125 (125)
Q Consensus 119 ~~~~~~~ 125 (125)
++..+.|
T Consensus 91 ~a~~~~s 97 (98)
T 2cqp_A 91 LGSGPSS 97 (98)
T ss_dssp ESSCSSC
T ss_pred EcCCCCC
Confidence 9987654
No 50
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.87 E-value=1.6e-21 Score=128.97 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDG 79 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~ 79 (125)
|.+.++|.+|++ +||..+.|+.|.+.++ ..++|||+|||..+++++|+++|+.|| .|..+.++.+.
T Consensus 88 f~~~~~A~~A~~-~~~~~~~g~~i~v~~~------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~ 154 (292)
T 2ghp_A 88 FARYDGALAAIT-KTHKVVGQNEIIVSHL------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR 154 (292)
T ss_dssp ESSHHHHHHHHT-TTTCEETTEECEEEEC------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---
T ss_pred ECCHHHHHHHHH-hCCcEeCCcEEEEEEC------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC
Confidence 689999999995 9999999999999985 356899999999999999999999999 99999998874
Q ss_pred CCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 80 ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 80 ~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
. |.++|+|||+|.+.++|..|+..|++..+.|+.|.|.++.++
T Consensus 155 ~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 197 (292)
T 2ghp_A 155 F-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL 197 (292)
T ss_dssp -----CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred C-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 4 778999999999999999999999999999999999998765
No 51
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=6.2e-21 Score=108.53 Aligned_cols=86 Identities=24% Similarity=0.565 Sum_probs=79.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 37 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 37 ~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
.....+.++|||+|||..+++++|+++|++|| |..+.++.+..++.++|||||+|.+.++|++|+ .|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34455779999999999999999999999997 999999999888999999999999999999999 8999999999999
Q ss_pred EEecCCCC
Q 033218 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.++.+++
T Consensus 87 V~~a~~~~ 94 (103)
T 2dng_A 87 VDIAEGRK 94 (103)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99988764
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=111.71 Aligned_cols=85 Identities=27% Similarity=0.517 Sum_probs=80.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||.++++++|+++|++||.|..+.+..+..++.++++|||+|.+.++|++|+..|++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ecCCC
Q 033218 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
+++++
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 98865
No 53
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2.6e-21 Score=110.74 Aligned_cols=87 Identities=24% Similarity=0.460 Sum_probs=80.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeec-CCCCCceeEEEEEeecHHHHHHHHHHh-CCCeeCCeEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYD-GESGRSRGYGFVCYSTKAEMETALESL-NGVELEGRAM 115 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~~~fv~f~~~~~a~~~~~~l-~~~~~~g~~i 115 (125)
....+.++|||+|||..+++++|+++|++||.|..+.++.+ ..++.+++||||+|.+.++|++|+..| ++..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34457789999999999999999999999999999999888 678999999999999999999999999 9999999999
Q ss_pred EEEecCCCC
Q 033218 116 RVSLAQGRR 124 (125)
Q Consensus 116 ~v~~~~~~~ 124 (125)
.|.++.++.
T Consensus 90 ~v~~a~~~~ 98 (107)
T 2cph_A 90 VLEWADSEV 98 (107)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999998764
No 54
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2.5e-21 Score=109.20 Aligned_cols=84 Identities=26% Similarity=0.462 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCC---CCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE---SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
.+.++|||+|||.++++++|+++|++||.|..+.+..+.. ++.+++||||+|.+.++|++|+..|++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4668999999999999999999999999999999988765 5588999999999999999999999999999999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++.++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9988653
No 55
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.87 E-value=6.4e-21 Score=108.77 Aligned_cols=84 Identities=30% Similarity=0.474 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCC---eEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG---RAMR 116 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g---~~i~ 116 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+. ++.+++||||+|.+.++|++|+..|++..+.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3567899999999999999999999999999999999985 78999999999999999999999999999987 9999
Q ss_pred EEecCCCC
Q 033218 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.++++++
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99998764
No 56
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.9e-21 Score=110.49 Aligned_cols=85 Identities=33% Similarity=0.556 Sum_probs=80.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.++.+..++.++++|||+|.+.++|++|+..|++..+.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.+++
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88764
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=1.2e-21 Score=115.70 Aligned_cols=87 Identities=33% Similarity=0.568 Sum_probs=81.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
..+.+.++|||+|||..+++++|+++|++||.|..+.++++..++..+|||||+|.+.++|++|+..|++..+.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++.+++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998775
No 58
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.87 E-value=3.2e-22 Score=111.31 Aligned_cols=81 Identities=26% Similarity=0.506 Sum_probs=72.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYG--NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+|||+|||.++++++|+++|++|| .+..+.++.+..+|.++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998899999999999999999999999999999999999999988
Q ss_pred CCC
Q 033218 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
++.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 753
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=4.5e-21 Score=109.09 Aligned_cols=85 Identities=33% Similarity=0.636 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|++||.|..+.+..+ ++.+++||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34457889999999999999999999999999999999887 7889999999999999999999999999999999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2d9p_A 88 ALAQRKE 94 (103)
T ss_dssp EECSSCC
T ss_pred EEecccc
Confidence 9988763
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=5.8e-21 Score=114.03 Aligned_cols=86 Identities=28% Similarity=0.520 Sum_probs=80.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
.....++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34566899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 033218 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
+++++.
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 988653
No 61
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=2.4e-21 Score=107.19 Aligned_cols=83 Identities=22% Similarity=0.448 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC-ceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR-SRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
.+++|||+|||.++++++|+++|++||.|..+.+..+..++. ++|+|||+|.+.++|++|+..|+|..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467899999999999999999999999999999988876655 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 033218 121 QGRR 124 (125)
Q Consensus 121 ~~~~ 124 (125)
.+++
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 62
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=110.72 Aligned_cols=85 Identities=38% Similarity=0.656 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||.++++++|+++|++||.|..+.+..+..++.++++|||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 87653
No 63
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.8e-21 Score=108.53 Aligned_cols=85 Identities=27% Similarity=0.498 Sum_probs=78.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC-CCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES-GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
.+..+.++|||+|||..+++++|+++|..|| |..+.++.+..+ +.+++||||+|.+.++|++|+ .|++..+.|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3345679999999999999999999999999 999999998777 899999999999999999999 9999999999999
Q ss_pred EEecCCCC
Q 033218 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.++.++.
T Consensus 88 V~~a~~~~ 95 (104)
T 1wi8_A 88 VDVADQAQ 95 (104)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998764
No 64
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=3.9e-21 Score=111.83 Aligned_cols=83 Identities=25% Similarity=0.528 Sum_probs=77.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ecC
Q 033218 119 LAQ 121 (125)
Q Consensus 119 ~~~ 121 (125)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 65
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=108.56 Aligned_cols=84 Identities=24% Similarity=0.435 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCee-EEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeE----
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVV-GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA---- 114 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~---- 114 (125)
..++++|||+|||..+++++|+++|++||.|. .+.++.++.++.+++||||+|.+.++|++|+..|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 033218 115 MRVSLAQGR 123 (125)
Q Consensus 115 i~v~~~~~~ 123 (125)
|+|.++++.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998865
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=6e-21 Score=105.81 Aligned_cols=81 Identities=28% Similarity=0.543 Sum_probs=77.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
.++|||+|||.++++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|++|+ .+++..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999999889999999999999999999999 9999999999999999987
Q ss_pred CC
Q 033218 123 RR 124 (125)
Q Consensus 123 ~~ 124 (125)
++
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 64
No 67
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.86 E-value=3.6e-21 Score=109.99 Aligned_cols=86 Identities=23% Similarity=0.428 Sum_probs=80.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCee---CCeEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL---EGRAM 115 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~---~g~~i 115 (125)
...+.++|||+|||..+++++|+++|++||.|..+.++.+..++.+++||||+|.+.++|.+|+..|++..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345678999999999999999999999999999999999988899999999999999999999999999887 88999
Q ss_pred EEEecCCCC
Q 033218 116 RVSLAQGRR 124 (125)
Q Consensus 116 ~v~~~~~~~ 124 (125)
.|.++.+++
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999988664
No 68
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.86 E-value=1.1e-20 Score=108.18 Aligned_cols=83 Identities=39% Similarity=0.574 Sum_probs=78.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|++||.|..+.+..+. +|.++++|||+|.+.++|++|+..|++..+.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344678999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred EecC
Q 033218 118 SLAQ 121 (125)
Q Consensus 118 ~~~~ 121 (125)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9975
No 69
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.86 E-value=4.6e-22 Score=112.73 Aligned_cols=82 Identities=21% Similarity=0.339 Sum_probs=77.9
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCC-eE
Q 033218 42 TDFKLFVGNLSW------SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG-RA 114 (125)
Q Consensus 42 ~~~~l~i~~lp~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g-~~ 114 (125)
.+++|||+|||. ++++++|+++|++||.|..+.++++..+|.++|||||+|.+.++|++|+..|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999998889999999999999999999999999999998 99
Q ss_pred EEEEecCCC
Q 033218 115 MRVSLAQGR 123 (125)
Q Consensus 115 i~v~~~~~~ 123 (125)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998754
No 70
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.4e-21 Score=109.88 Aligned_cols=86 Identities=27% Similarity=0.451 Sum_probs=80.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCee--------EEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCee
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVV--------GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~ 110 (125)
...+.++|||+|||..+++++|+++|++||.|. .+.+..+..++.+++||||+|.+.++|++|+..|++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345778999999999999999999999999998 689999888899999999999999999999999999999
Q ss_pred CCeEEEEEecCCCC
Q 033218 111 EGRAMRVSLAQGRR 124 (125)
Q Consensus 111 ~g~~i~v~~~~~~~ 124 (125)
.|+.|+|.+++++.
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999988763
No 71
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=5.3e-21 Score=111.05 Aligned_cols=84 Identities=27% Similarity=0.521 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||.++++++|+++|++||.|..+.+..+. ++.++|||||+|.+.++|++|+..|++..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999986 899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
++++.
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 88653
No 72
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=8.8e-21 Score=106.36 Aligned_cols=83 Identities=34% Similarity=0.572 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+.. +.++++|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345678999999999999999999999999999999999854 8899999999999999999999999999999999999
Q ss_pred ecCC
Q 033218 119 LAQG 122 (125)
Q Consensus 119 ~~~~ 122 (125)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 73
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.5e-20 Score=105.38 Aligned_cols=85 Identities=28% Similarity=0.563 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|++||.|..+.+..+.. .++++|||+|.+.++|++|+..|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445678999999999999999999999999999999988743 37899999999999999999999999999999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cq3_A 88 NNATARV 94 (103)
T ss_dssp EECCSSC
T ss_pred EEcccCC
Confidence 9988763
No 74
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.86 E-value=6.1e-21 Score=115.98 Aligned_cols=82 Identities=28% Similarity=0.472 Sum_probs=77.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYG--NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..++|||+|||.++++++|+++|+.|| .|..+.++.+..+|.++|||||+|.+.++|++|+..|+|..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 033218 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8753
No 75
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-20 Score=108.67 Aligned_cols=85 Identities=36% Similarity=0.550 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|++||.|..+.++.+..++.+++||||+|.+.++|++|+..+++ .+.|+.|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3445778999999999999999999999999999999999988899999999999999999999999998 899999999
Q ss_pred EecCCC
Q 033218 118 SLAQGR 123 (125)
Q Consensus 118 ~~~~~~ 123 (125)
.++.++
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 998653
No 76
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.3e-20 Score=105.49 Aligned_cols=84 Identities=26% Similarity=0.406 Sum_probs=76.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+..+ +++||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 4456789999999999999999999999999999999887433 68999999999999999999999999999999999
Q ss_pred ecCCCC
Q 033218 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 988764
No 77
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=1.1e-20 Score=105.43 Aligned_cols=83 Identities=29% Similarity=0.522 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ ++.++++|||+|.+.++|+.|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999988874 678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
++++.
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 88764
No 78
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.7e-21 Score=110.94 Aligned_cols=84 Identities=39% Similarity=0.706 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|++|+..|++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35578999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCC
Q 033218 121 QGRR 124 (125)
Q Consensus 121 ~~~~ 124 (125)
.++.
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8763
No 79
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9e-21 Score=108.19 Aligned_cols=86 Identities=36% Similarity=0.558 Sum_probs=80.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|.+||.|..+.+..++.++.+++||||+|.+.++|++|+.. ++..+.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456778999999999999999999999999999999999988999999999999999999999998 999999999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++.++.
T Consensus 90 ~~a~~~~ 96 (105)
T 2dh8_A 90 KPCTPRG 96 (105)
T ss_dssp CCSCCSS
T ss_pred EEccCCC
Confidence 9988763
No 80
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=2.6e-20 Score=113.19 Aligned_cols=84 Identities=29% Similarity=0.480 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.++.+..++.+++||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCC
Q 033218 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+.++
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 8765
No 81
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.1e-21 Score=108.41 Aligned_cols=83 Identities=33% Similarity=0.588 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCe-eCCeEEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE-LEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~-~~g~~i~v 117 (125)
..+.++|||+|||..+++++|+++|++ ||.|..+.++.+. ++.+++||||+|.+.++|..|+..|++.. +.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999997 89999999999999999999999999999 99999999
Q ss_pred EecCCC
Q 033218 118 SLAQGR 123 (125)
Q Consensus 118 ~~~~~~ 123 (125)
.++.++
T Consensus 85 ~~a~~~ 90 (104)
T 2dhg_A 85 SVAIPK 90 (104)
T ss_dssp CBCCCC
T ss_pred EEccCC
Confidence 998765
No 82
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.85 E-value=2.7e-20 Score=109.18 Aligned_cols=84 Identities=36% Similarity=0.566 Sum_probs=78.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
...++++|||+|||..+++++|+++|++||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999986 89999999999999999999999999999999999999
Q ss_pred ecCCC
Q 033218 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 98765
No 83
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=6.6e-21 Score=112.04 Aligned_cols=85 Identities=31% Similarity=0.494 Sum_probs=79.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.++.+..++.++++|||+|.+.++|++|+..|++..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 033218 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 98 ~a~~~ 102 (126)
T 3ex7_B 98 WCFVR 102 (126)
T ss_dssp ESEES
T ss_pred EecCC
Confidence 98754
No 84
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4e-20 Score=102.92 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
....++|||+|||.++++++|+++|+.| .|..+.++++ .+|.++|+|||+|.+.++|++|+. +++..+.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 889999999999999999999999 999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 88763
No 85
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=9.7e-21 Score=108.81 Aligned_cols=85 Identities=33% Similarity=0.602 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||.++++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999888999999999999999999999976 588999999999
Q ss_pred ecCCCC
Q 033218 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.++.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 988764
No 86
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=105.96 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCe--eCCeEEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE--LEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~--~~g~~i~v 117 (125)
.+++.+|||+|||.++++++|+++|++||.|..+.+++ .+|+|||+|.+.++|..|+..|++.. +.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 45788999999999999999999999999999998864 36899999999999999999999864 78999999
Q ss_pred EecCCC
Q 033218 118 SLAQGR 123 (125)
Q Consensus 118 ~~~~~~ 123 (125)
+||+++
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999876
No 87
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.3e-20 Score=104.93 Aligned_cols=81 Identities=20% Similarity=0.264 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 41 ETDFKLFVGNLSWSVTTESLT----QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
...++|||+|||..+++++|+ ++|++||.|..+.++.+..+ ++||||+|.+.++|++|+..||+..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999888554 78999999999999999999999999999999
Q ss_pred EEecCCCC
Q 033218 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.+++++.
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99998763
No 88
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=3.6e-20 Score=102.27 Aligned_cols=80 Identities=35% Similarity=0.680 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|+|||+|.+.++|++|+. +++..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999998899999999999999999999996 488889999999987
Q ss_pred c
Q 033218 120 A 120 (125)
Q Consensus 120 ~ 120 (125)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 89
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=9.7e-20 Score=105.27 Aligned_cols=82 Identities=33% Similarity=0.472 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|.+||.|..+.+..+. ++.++++|||+|.+.++|+.|+..|++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3467899999999999999999999999999999999985 689999999999999999999999999999999999999
Q ss_pred cCC
Q 033218 120 AQG 122 (125)
Q Consensus 120 ~~~ 122 (125)
++.
T Consensus 91 a~~ 93 (114)
T 2do0_A 91 DER 93 (114)
T ss_dssp CSC
T ss_pred ccc
Confidence 864
No 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.2e-20 Score=105.36 Aligned_cols=84 Identities=21% Similarity=0.436 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|++||.|..+.+..+ +.+++||||+|.+.++|++|++.|++..+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999888543 557899999999999999999999999999999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++++++
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4a_A 94 EFPRSGR 100 (109)
T ss_dssp ECCCCCC
T ss_pred EEcccCC
Confidence 9988663
No 91
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-19 Score=103.21 Aligned_cols=85 Identities=24% Similarity=0.441 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++|+. ++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 344567899999999999999999999999999999999998889999999999999999999998 577899999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqg_A 88 KLPNSKQ 94 (103)
T ss_dssp ECCCTTC
T ss_pred EecCCCC
Confidence 9988753
No 92
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.85 E-value=8.6e-21 Score=106.40 Aligned_cols=83 Identities=20% Similarity=0.325 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
.++.++|||+|||..+++++|+++|.+||.|..+.++.+..++.++++|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999998888888888899999999999999999999999999999999999998
Q ss_pred cCC
Q 033218 120 AQG 122 (125)
Q Consensus 120 ~~~ 122 (125)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 764
No 93
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=107.15 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCC--CeeCCeEEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG--VELEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~--~~~~g~~i~v 117 (125)
+.+.++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|+.|+..+++ ..+.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 457789999999999999999999999999999998754 68999999999999999998864 7899999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.+++++.
T Consensus 87 ~~A~~~~ 93 (105)
T 1sjq_A 87 QFSNHKE 93 (105)
T ss_dssp CCCSSSS
T ss_pred EEcCCCC
Confidence 9998763
No 94
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.2e-20 Score=106.12 Aligned_cols=84 Identities=24% Similarity=0.466 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCee--------C
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL--------E 111 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~--------~ 111 (125)
..+.++|||+|||..+++++|+++|+.||.|..+.++.+. ++.+++||||+|.+.++|+.|+..|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567899999999999999999999999999999999996 899999999999999999999999999998 5
Q ss_pred CeEEEEEecCCCC
Q 033218 112 GRAMRVSLAQGRR 124 (125)
Q Consensus 112 g~~i~v~~~~~~~ 124 (125)
++.|.|.|+.++.
T Consensus 101 ~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 101 TEPLLCKFSGPSS 113 (114)
T ss_dssp SSCBEEEECCCSC
T ss_pred CCceeEEccCCCC
Confidence 7789999999765
No 95
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-20 Score=107.09 Aligned_cols=84 Identities=27% Similarity=0.564 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
......++|||+|||.++++++|+++|++||.|..+.+..+. +.++|+|||+|.+.++|++|+..|+|..+.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334567899999999999999999999999999999998874 347899999999999999999999999999999999
Q ss_pred EecCCC
Q 033218 118 SLAQGR 123 (125)
Q Consensus 118 ~~~~~~ 123 (125)
.+++++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999876
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=4e-21 Score=108.81 Aligned_cols=85 Identities=28% Similarity=0.507 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecC-CCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDG-ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
......++|||+|||.++++++|+++|+.|| |..+.+..+. .+|.++|||||+|.+.++|.+|+ .|++..+.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3445679999999999999999999999999 9999999887 58999999999999999999999 8999999999999
Q ss_pred EEecCCCC
Q 033218 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.+++++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998764
No 97
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.4e-21 Score=110.63 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++|||+|||..+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|+ .|++..+.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3479999999999999999999999999999999999888999999999999999999999 999999999999999986
Q ss_pred CC
Q 033218 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
++
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 98
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=108.87 Aligned_cols=82 Identities=35% Similarity=0.606 Sum_probs=77.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
+.++|||+|||..+++++|+++|..||.|..+.++.+..++.++|||||+|.+.++|++|+.. ++..+.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999999988899999999999999999999998 9999999999999998
Q ss_pred CCC
Q 033218 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
++.
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 763
No 99
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3e-20 Score=107.09 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH---HHHhcCCCeeEEEEeecCCCC---CceeEEEEEeecHHHHHHHHHHhCCCeeCC
Q 033218 39 YAETDFKLFVGNLSWSVTTESLT---QAFQEYGNVVGARVLYDGESG---RSRGYGFVCYSTKAEMETALESLNGVELEG 112 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g 112 (125)
...+.++|||+|||.++++++|+ ++|++||.|..+.+..+..++ .++|||||+|.+.++|++|+..||+..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999998886543 456999999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q 033218 113 RAMRVSLAQGRR 124 (125)
Q Consensus 113 ~~i~v~~~~~~~ 124 (125)
+.|+|.++.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998764
No 100
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.84 E-value=6e-20 Score=109.61 Aligned_cols=82 Identities=33% Similarity=0.557 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred ec
Q 033218 119 LA 120 (125)
Q Consensus 119 ~~ 120 (125)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 101
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-20 Score=106.77 Aligned_cols=85 Identities=20% Similarity=0.348 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEEe-ecCCCCCceeEEEEEeecHHHHHHHHHHhC--CCeeCCeEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGN-VVGARVL-YDGESGRSRGYGFVCYSTKAEMETALESLN--GVELEGRAM 115 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~--~~~~~g~~i 115 (125)
..+.++|||+|||..+++++|+++|.+||. |..+.++ .+..++.++|||||+|.+.++|..|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999888 777788999999999999999999999996 589999999
Q ss_pred EEEecCCCC
Q 033218 116 RVSLAQGRR 124 (125)
Q Consensus 116 ~v~~~~~~~ 124 (125)
.|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999998763
No 102
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.84 E-value=5.3e-20 Score=107.89 Aligned_cols=81 Identities=21% Similarity=0.512 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|..|+ .|++..+.|+.|.|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999999999889999999999999999999999 799999999999999988
Q ss_pred CC
Q 033218 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
+.
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 103
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=7.3e-21 Score=112.62 Aligned_cols=84 Identities=25% Similarity=0.456 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeE--EEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCC----eeCCe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG--ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV----ELEGR 113 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~----~~~g~ 113 (125)
....++|||+|||.++++++|+++|++||.|.. ++++++..+|.++|||||+|.+. +|.+|+..|++. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999966 99999988999999999999999 999999999999 99999
Q ss_pred EEEEEecCCCC
Q 033218 114 AMRVSLAQGRR 124 (125)
Q Consensus 114 ~i~v~~~~~~~ 124 (125)
.|.|.++++++
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998763
No 104
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-21 Score=106.28 Aligned_cols=82 Identities=21% Similarity=0.435 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
+.+.++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34678999999999999999999999999999999999988899999999999999999999999999999999888776
Q ss_pred cC
Q 033218 120 AQ 121 (125)
Q Consensus 120 ~~ 121 (125)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 105
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=105.60 Aligned_cols=80 Identities=10% Similarity=0.204 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
....++|||+|||.++++++|+++|++||.|..+.++++.. |.++|||||+|.+.++|..|+. +++..+.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999966 9999999999999999999999 899999999999987
Q ss_pred cC
Q 033218 120 AQ 121 (125)
Q Consensus 120 ~~ 121 (125)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 54
No 106
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=105.42 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCC--CeeCCeEEE
Q 033218 40 AETDFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG--VELEGRAMR 116 (125)
Q Consensus 40 ~~~~~~l~i~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~--~~~~g~~i~ 116 (125)
..++++|||+|||. .+++++|+++|++||.|..+.++.+ +++|||+|.+.++|..|+..|++ ..+.|+.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45788999999999 9999999999999999999988754 47999999999999999999886 469999999
Q ss_pred EEecCCCC
Q 033218 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.++++++
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998643
No 107
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-19 Score=102.10 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHh--CCCeeCCeEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL--NGVELEGRAMR 116 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l--~~~~~~g~~i~ 116 (125)
...++++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|..|+..| ++..+.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3457789999999999999999999999999999987654 689999999999999999977 46789999999
Q ss_pred EEecCCC
Q 033218 117 VSLAQGR 123 (125)
Q Consensus 117 v~~~~~~ 123 (125)
|.+++++
T Consensus 85 V~~a~~~ 91 (101)
T 2cq1_A 85 IQYSNHK 91 (101)
T ss_dssp EEECSCS
T ss_pred EEEcCcc
Confidence 9999865
No 108
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-19 Score=101.87 Aligned_cols=84 Identities=29% Similarity=0.497 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|+.|+ .+.++.+..++.+++||||+|.+.++|++|+..|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456779999999999999999999999774 5667778788999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.+++++.
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998764
No 109
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-19 Score=101.53 Aligned_cols=79 Identities=20% Similarity=0.427 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC--CeEEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE--GRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~--g~~i~v 117 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|++.||+..+. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999887643 679999999999999999999999999 999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++++++
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998875
No 110
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=6.6e-20 Score=107.80 Aligned_cols=83 Identities=16% Similarity=0.327 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLT----QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~ 114 (125)
...+.++|||+|||..+++++|+ ++|++||.|..+.+. .++.++|||||+|.+.++|..|+..|||..+.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34567899999999999999876 699999999888764 45778999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 033218 115 MRVSLAQGRR 124 (125)
Q Consensus 115 i~v~~~~~~~ 124 (125)
|+|.+++++.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998753
No 111
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=1.6e-20 Score=100.94 Aligned_cols=75 Identities=31% Similarity=0.594 Sum_probs=71.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
+|||+|||.++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+. +++..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998889999999999999999999998 9999999999999875
No 112
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-19 Score=102.03 Aligned_cols=82 Identities=33% Similarity=0.575 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.| .++.+ .++.++++|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44577999999999999999999999999977 45555 678899999999999999999999999999999999999
Q ss_pred ecCCCC
Q 033218 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.+++
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 988763
No 113
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=100.05 Aligned_cols=77 Identities=29% Similarity=0.575 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||.++++++|+++|++||.|..+.+. +++|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999998876 46999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
++++.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 88663
No 114
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=105.53 Aligned_cols=78 Identities=14% Similarity=0.228 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCC--CeeCCeEEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG--VELEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~--~~~~g~~i~v 117 (125)
..++++|||+|||.++++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..+++ ..+.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456789999999999999999999999999999998765 68999999999999999998874 6899999999
Q ss_pred EecCCC
Q 033218 118 SLAQGR 123 (125)
Q Consensus 118 ~~~~~~ 123 (125)
.+++++
T Consensus 102 ~~a~~k 107 (119)
T 2ad9_A 102 QFSNHK 107 (119)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 999876
No 115
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=2.7e-19 Score=100.71 Aligned_cols=80 Identities=21% Similarity=0.450 Sum_probs=71.4
Q ss_pred CCCCCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEE
Q 033218 37 PLYAETDFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 37 ~~~~~~~~~l~i~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i 115 (125)
.....++++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|+|..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456789999999998 99999999999999999998872 6799999999999999999999999999999
Q ss_pred EEEecCCCC
Q 033218 116 RVSLAQGRR 124 (125)
Q Consensus 116 ~v~~~~~~~ 124 (125)
+|.+++++.
T Consensus 88 ~V~~a~~~~ 96 (97)
T 2xnq_A 88 ILEVSSSNA 96 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEecCCCC
Confidence 999998763
No 116
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-19 Score=101.58 Aligned_cols=78 Identities=26% Similarity=0.360 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCC-----eE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG-----RA 114 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g-----~~ 114 (125)
....++|||+|||.++++++|+++|++||.|..+.++.+ +||||+|.+.++|+.|++.||+..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999988755 799999999999999999999999999 99
Q ss_pred EEEEecCCCC
Q 033218 115 MRVSLAQGRR 124 (125)
Q Consensus 115 i~v~~~~~~~ 124 (125)
|.|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999988763
No 117
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=8.6e-20 Score=106.22 Aligned_cols=82 Identities=21% Similarity=0.373 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGN---VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i 115 (125)
.....++|||+|||.++++++|+++|+.||. |..+.++++.. |.++|+|||+|.+.++|++|+. +++..+.|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999998 88999999855 9999999999999999999999 99999999999
Q ss_pred EEEecCC
Q 033218 116 RVSLAQG 122 (125)
Q Consensus 116 ~v~~~~~ 122 (125)
.|.++.+
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998754
No 118
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.82 E-value=5.8e-21 Score=106.12 Aligned_cols=79 Identities=30% Similarity=0.686 Sum_probs=73.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.+ |..|+..|+|..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999888999999999999999 99999999999999999999998765
No 119
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=4.1e-20 Score=103.98 Aligned_cols=82 Identities=22% Similarity=0.442 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLT----QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i 115 (125)
..++++|||+|||..+++++|+ ++|++||.|..+.+.. +|.++|+|||+|.+.++|..|+..|+|..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4577899999999999999999 9999999999988763 46678999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 033218 116 RVSLAQGRR 124 (125)
Q Consensus 116 ~v~~~~~~~ 124 (125)
.|.+++++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998764
No 120
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=7.7e-20 Score=104.37 Aligned_cols=81 Identities=22% Similarity=0.400 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCC------CHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCe-
Q 033218 41 ETDFKLFVGNLSWSV------TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR- 113 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~- 113 (125)
..+++|||+|||..+ ++++|+.+|++||.|..+.++ ..+|.++|||||+|.+.++|..|+..|+|..+.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999999887 36788999999999999999999999999999998
Q ss_pred EEEEEecCCC
Q 033218 114 AMRVSLAQGR 123 (125)
Q Consensus 114 ~i~v~~~~~~ 123 (125)
.|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998643
No 121
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=101.31 Aligned_cols=82 Identities=29% Similarity=0.473 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
......++|||+|||..+++++|+++|++||.|. +.++.+ .+++||||+|.+.++|+.|+..|++..+.|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445678999999999999999999999999986 555543 46889999999999999999999999999999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++++++
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9998774
No 122
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.1e-20 Score=105.96 Aligned_cols=82 Identities=17% Similarity=0.234 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCe-eEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNV-VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
+.+.++|||+|||.++++++|+++|+.||.+ ..+.++++. +|.++|||||+|.+.++|++|+.. ++..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567899999999999999999999999999 889999996 899999999999999999999987 9999999999999
Q ss_pred ecCCC
Q 033218 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 97643
No 123
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=1.1e-19 Score=99.35 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+.-|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.||+..+.|+.|+|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 456799999999999999999999999999998864 58999999999999999999999999999999999874
No 124
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-19 Score=101.81 Aligned_cols=79 Identities=30% Similarity=0.510 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999988744 68999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 98764
No 125
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=8.1e-20 Score=105.77 Aligned_cols=81 Identities=25% Similarity=0.450 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
+.++++|||+|||..+++++|+++|+.||.|..+.++.+ +..+|+|||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999998865 44589999999999999999999999999999999999
Q ss_pred cCCC
Q 033218 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+.++
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 8764
No 126
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=102.50 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCC--CeeCCeEEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG--VELEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~--~~~~g~~i~v 117 (125)
..++++|||+|||.++++++|+++|++||.|..+.++.+ +++|||+|.+.++|..|+..|++ ..+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999887643 68999999999999999998865 4589999999
Q ss_pred EecCCC
Q 033218 118 SLAQGR 123 (125)
Q Consensus 118 ~~~~~~ 123 (125)
.+++++
T Consensus 86 ~~a~~~ 91 (104)
T 1wex_A 86 NYSTSK 91 (104)
T ss_dssp EECSSS
T ss_pred EEccCc
Confidence 999865
No 127
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=8.5e-21 Score=107.59 Aligned_cols=83 Identities=29% Similarity=0.517 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||.++++++|+++|+.||.+.. .++.+..++.++|||||+|.+.++|++|++ |++..+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999999999999999999998876 555555678889999999999999999999 999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98764
No 128
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=2.1e-19 Score=103.06 Aligned_cols=79 Identities=19% Similarity=0.388 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|++||.|..+.+. +|+|||+|.+.++|+.|+..|+|..+.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344567899999999999999999999999999998886 579999999999999999999999999999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++++++
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9998764
No 129
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-20 Score=107.96 Aligned_cols=85 Identities=26% Similarity=0.450 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..++++|||+|||..+++++|+++|++||.|..+.+.....++.++|||||+|.+.++|+.|+..|++..+.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999884322111122678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.+++
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 88764
No 130
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.6e-20 Score=100.59 Aligned_cols=76 Identities=34% Similarity=0.647 Sum_probs=72.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|+|||+|.+.++|++|+..++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999999 9999999999886
No 131
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.82 E-value=6.9e-20 Score=108.88 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGN---VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~ 114 (125)
......++|||+|||+++++++|+++|+.||. |..+.++++.. |.++|+|||+|.+.++|++|+. +++..++|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 33456789999999999999999999999998 88899999966 9999999999999999999999 9999999999
Q ss_pred EEEEecCC
Q 033218 115 MRVSLAQG 122 (125)
Q Consensus 115 i~v~~~~~ 122 (125)
|.|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99998764
No 132
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=102.62 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG-ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
.....++|||+|||.++++++|+++|..||.|.. +.++.+ .+|.++|+|||+|.+.++|++|+.. ++..++|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 788888 7899999999999999999999997 999999999999
Q ss_pred EecCCC
Q 033218 118 SLAQGR 123 (125)
Q Consensus 118 ~~~~~~ 123 (125)
.++.++
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 887654
No 133
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.7e-19 Score=98.13 Aligned_cols=77 Identities=31% Similarity=0.574 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4567899999999999999999999999999998886 33999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
++++.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98763
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=2e-19 Score=103.44 Aligned_cols=94 Identities=28% Similarity=0.481 Sum_probs=77.3
Q ss_pred CCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHH
Q 033218 20 LGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWS-VTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 98 (125)
Q Consensus 20 ~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a 98 (125)
.|.++.+..+..... .......++|||+|||.. +++++|+++|++||.|..+.+ ++++|||+|.+.++|
T Consensus 6 ~g~~~~~~~s~~~~~--~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A 75 (110)
T 1wf1_A 6 SGMSLKLQASNVTNK--NDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHA 75 (110)
T ss_dssp CSCCCCCCCCCSCCS--CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHH
T ss_pred CCcccccccCCCCCC--CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHH
Confidence 345555554443222 223345689999999999 999999999999999999887 467999999999999
Q ss_pred HHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 99 ETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 99 ~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+.|+..|++..+.|+.|+|.+++++
T Consensus 76 ~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 76 RAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp HHHHHHHTTCEETTEECCEEESCCC
T ss_pred HHHHHHcCCCEECCeEEEEEECCCC
Confidence 9999999999999999999998754
No 135
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.1e-19 Score=102.46 Aligned_cols=79 Identities=24% Similarity=0.537 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
....++|||+|||..+++++|+++|++||.|..+.+..+ ++||||+|.+.++|..|+..|++..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999988765 67999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
++++.
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 88763
No 136
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=101.52 Aligned_cols=80 Identities=23% Similarity=0.478 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+ ..++.++|+|||+|.+.++|..|+..|++..+.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4467899999999999999999999999987655 25678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 98764
No 137
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-18 Score=98.19 Aligned_cols=79 Identities=29% Similarity=0.460 Sum_probs=71.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEE
Q 033218 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEY--GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i 115 (125)
....+.++|||+|||..+++++|+++|++| |.|..+.+. ++||||+|.+.++|..|+..|++..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 888887653 5699999999999999999999999999999
Q ss_pred EEEecCCCC
Q 033218 116 RVSLAQGRR 124 (125)
Q Consensus 116 ~v~~~~~~~ 124 (125)
.|.+++++.
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpd_A 82 EVTLAKPVD 90 (99)
T ss_dssp EEECCCCCC
T ss_pred EEEECCCCC
Confidence 999988763
No 138
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.81 E-value=7.3e-19 Score=107.23 Aligned_cols=82 Identities=30% Similarity=0.548 Sum_probs=77.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
++++|||+|||.++++++|+++|+.||.|..+.+..+..+|.++|+|||+|.+.++|..|+..|++..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CC
Q 033218 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
++
T Consensus 81 ~~ 82 (167)
T 1fxl_A 81 PS 82 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 139
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.2e-19 Score=97.14 Aligned_cols=76 Identities=25% Similarity=0.428 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHh-CCCeeCCeEEEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL-NGVELEGRAMRVS 118 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l-~~~~~~g~~i~v~ 118 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|..|+..| ++..+.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456789999999999999999999999999999988754 689999999999999999999 9999999999999
Q ss_pred ecC
Q 033218 119 LAQ 121 (125)
Q Consensus 119 ~~~ 121 (125)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 140
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=2.7e-19 Score=102.86 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
...++|||+|||.++++++|+++|++|| .|..+.+.. ..++|||||+|.+.++|+.|+..|+|..+.|+.|+|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3568999999999999999999999999 898887743 24789999999999999999999999999999999999
Q ss_pred cCCC
Q 033218 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+..+
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 141
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.9e-20 Score=108.52 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
.....++|||+|||.++++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34466899999999999999999999999999875555666789999999999999999999999 99999999999999
Q ss_pred ecCC
Q 033218 119 LAQG 122 (125)
Q Consensus 119 ~~~~ 122 (125)
++.+
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9765
No 142
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.4e-19 Score=101.53 Aligned_cols=77 Identities=21% Similarity=0.419 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
...++|||+|||..+++++|+++|++||.|..+.+.. +++||||+|.+.++|..|+..|++..+.|+.|+|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3568999999999999999999999999999998862 4789999999999999999999999999999999998
Q ss_pred CCC
Q 033218 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 143
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=7.5e-19 Score=111.63 Aligned_cols=84 Identities=30% Similarity=0.436 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||.++++++|+++|++||.|..+.++++..++.++|||||+|.+.++|.+|+..+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34678999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cCCC
Q 033218 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7653
No 144
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=102.44 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
.+...++|||+|||.++++++|+++|+.|| +..+.+++++ ++.++|+|||+|.+.++|++|+. +++..+.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 345678999999999999999999999999 4589999996 89999999999999999999995 79999999999998
Q ss_pred ecCCC
Q 033218 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
.+.++
T Consensus 88 ~~~~~ 92 (102)
T 1wez_A 88 LNSTA 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 87654
No 145
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=1e-19 Score=116.83 Aligned_cols=81 Identities=26% Similarity=0.509 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYG--NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..++|||+|||.++++++|+++|++|| .|..+.++++..++.++|||||+|.+.++|++||..|++..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred cCC
Q 033218 120 AQG 122 (125)
Q Consensus 120 ~~~ 122 (125)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 764
No 146
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.80 E-value=7e-19 Score=107.54 Aligned_cols=82 Identities=27% Similarity=0.496 Sum_probs=78.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
++++|||+|||.++++++|+++|+.||.|..+.+..+..+|.++|+|||+|.+.++|..|+..|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CC
Q 033218 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
++
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 147
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=6.5e-20 Score=100.02 Aligned_cols=73 Identities=23% Similarity=0.453 Sum_probs=66.8
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCe-EE
Q 033218 43 DFKLFVGNLSWSV------TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR-AM 115 (125)
Q Consensus 43 ~~~l~i~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~-~i 115 (125)
+++|||+|||..+ ++++|+++|++||.|..+.++ ..+|.++|||||+|.+.++|..|+..|+|..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 679999999999999999877 36788999999999999999999999999999998 77
Q ss_pred EE
Q 033218 116 RV 117 (125)
Q Consensus 116 ~v 117 (125)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 148
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.9e-19 Score=101.96 Aligned_cols=78 Identities=24% Similarity=0.320 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++|||+|||.++++++|+++|+.| .|..+.++++. .|.++|+|||+|.+.++|++|+ .+++..++|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45799999999999999999999999 89999999985 4899999999999999999999 689999999999998875
Q ss_pred C
Q 033218 122 G 122 (125)
Q Consensus 122 ~ 122 (125)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 149
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=96.90 Aligned_cols=77 Identities=31% Similarity=0.601 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|+.|+..|++..+.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999998886 33899999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.+++
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88653
No 150
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=1.3e-18 Score=98.94 Aligned_cols=77 Identities=30% Similarity=0.531 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+. ++||||+|.+.++|++|+..|++..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3467899999999999999999999999999998875 34899999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 88653
No 151
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.79 E-value=2e-19 Score=102.04 Aligned_cols=80 Identities=23% Similarity=0.538 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
..+++|||+|||..+++++|+++|++||.|..+.++.+. +|.++|+|||+|.+.++|+.|+. ++..+.|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 456899999999999999999999999999999999996 89999999999999999999998 889999999998887
Q ss_pred CCC
Q 033218 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
.++
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 644
No 152
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=8.1e-20 Score=98.17 Aligned_cols=75 Identities=21% Similarity=0.433 Sum_probs=70.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
+|||+|||.++++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|++|+.. ++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988899999999999999999999985 889999999999875
No 153
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.79 E-value=7.9e-19 Score=108.69 Aligned_cols=82 Identities=37% Similarity=0.595 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.++|||+|||..+++++|+++|++||.|..+.+..+. ++.++++|||+|.+.++|..|+..|++..+.|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999986 8899999999999999999999999999999999999998
Q ss_pred CCC
Q 033218 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
.+.
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 754
No 154
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=101.24 Aligned_cols=75 Identities=29% Similarity=0.530 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
++|||+|||.++++++|+++|++||.|..+.+..+ ++++|||+|.+.++|+.|+..|++..+.|+.|.|.+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999988766 6789999999999999999999999999999999998765
No 155
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9e-19 Score=98.29 Aligned_cols=81 Identities=28% Similarity=0.344 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEE-EEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA-RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
.....++|||+|||..+++++|+++|++||.|..+ .++.+..++ .|||+|.+.++|..|+..|++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34457899999999999999999999999999999 477664433 3999999999999999999999999999999
Q ss_pred EecCCC
Q 033218 118 SLAQGR 123 (125)
Q Consensus 118 ~~~~~~ 123 (125)
.++.++
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999876
No 156
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.1e-19 Score=101.31 Aligned_cols=79 Identities=15% Similarity=0.287 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCC--CeeCCeEEE
Q 033218 40 AETDFKLFVGNLSWS-VTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG--VELEGRAMR 116 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~--~~~~g~~i~ 116 (125)
..++++|||+|||.+ +++++|+++|++||.|..+.+++ .+++|||+|.+.++|+.|+..|++ ..+.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457889999999998 99999999999999999998863 368999999999999999998864 568999999
Q ss_pred EEecCCCC
Q 033218 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.++++++
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99988653
No 157
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=108.21 Aligned_cols=81 Identities=27% Similarity=0.475 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG--------ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~ 111 (125)
..++++|||+|||..+++++|+.+|+.||.|.. +.+. .+|.++|||||+|.+.++|..|+..|||..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 456789999999999999999999999998865 3222 45788999999999999999999999999999
Q ss_pred CeEEEEEecCCC
Q 033218 112 GRAMRVSLAQGR 123 (125)
Q Consensus 112 g~~i~v~~~~~~ 123 (125)
|+.|.|.++++.
T Consensus 119 g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 GKPMVVQFARSA 130 (143)
T ss_dssp TEECEEEECCCS
T ss_pred CcEEEEEECCCC
Confidence 999999999764
No 158
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=104.18 Aligned_cols=82 Identities=21% Similarity=0.339 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGN---VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i 115 (125)
.....++|||+|||.++++++|+++|+.||. |..+.++.+.. |.++|+|||+|.+.++|++|+. +++..++|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999988 88999998865 9999999999999999999999 99999999999
Q ss_pred EEEecCC
Q 033218 116 RVSLAQG 122 (125)
Q Consensus 116 ~v~~~~~ 122 (125)
.|.++.+
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9998764
No 159
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=7.3e-21 Score=110.42 Aligned_cols=84 Identities=26% Similarity=0.454 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCC
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG--------ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG 112 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g 112 (125)
.+.++|||+|||..+++++|+++|++||.|.. +.++.+..++.+++||||+|.+.++|++|+..|++..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46689999999999999999999999999988 8888888888999999999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q 033218 113 RAMRVSLAQGRR 124 (125)
Q Consensus 113 ~~i~v~~~~~~~ 124 (125)
+.|+|.++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999988663
No 160
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=2.4e-18 Score=119.44 Aligned_cols=84 Identities=29% Similarity=0.629 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|..+|++||.|..+.|+.+..++.++|||||+|.+.++|..||..|||..|.|..|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCC
Q 033218 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+.++
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 8764
No 161
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.3e-19 Score=97.70 Aligned_cols=78 Identities=36% Similarity=0.562 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCC-CeeCCeEEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGN-VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG-VELEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~-~~~~g~~i~v 117 (125)
..+.++|||+|||.++++++|+++|++||. +..+.+. +++||||+|.+.++|+.|+..||+ ..+.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 346689999999999999999999999998 5544442 468999999999999999999999 9999999999
Q ss_pred EecCCCC
Q 033218 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.+++++.
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998764
No 162
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=4.4e-18 Score=99.90 Aligned_cols=77 Identities=21% Similarity=0.392 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeE-EEEEeecHHHHHHHHHHhCCCeeCC--eEEEEE
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY-GFVCYSTKAEMETALESLNGVELEG--RAMRVS 118 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~-~fv~f~~~~~a~~~~~~l~~~~~~g--~~i~v~ 118 (125)
+--.|||+||+..+++++|+++|++||.|..+.+... .+++ |||+|.+.++|+.|++.|||..+.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3456789999999999999999999999999987754 2567 9999999999999999999999987 899999
Q ss_pred ecCCC
Q 033218 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
|++++
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 99875
No 163
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.78 E-value=4.9e-18 Score=106.46 Aligned_cols=118 Identities=8% Similarity=0.077 Sum_probs=90.2
Q ss_pred CHHHHHHHHHhc--CCCccCCeEEEEeccCCCCCCCC----CCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEe
Q 033218 3 TVEDCNAVIENL--DGREYLGRILRVNFSDKPKPKLP----LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVL 76 (125)
Q Consensus 3 ~~~~a~~a~~~~--~~~~~~~~~i~v~~~~~~~~~~~----~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~ 76 (125)
+.+.+..|+... ....+.+....+........... ......++|||+|||.++++++|+.+|++||.|..+.++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567788888877 55666555444443321110000 011235899999999999999999999999999999999
Q ss_pred ecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 033218 77 YDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 77 ~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~ 122 (125)
++ .++.++|+|||+|.+.++|+.|+..++ ..+.|+.|.|.++..
T Consensus 143 ~~-~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 143 RT-LHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp EC-TTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred EC-CCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 88 458899999999999999999998654 599999999998654
No 164
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.1e-18 Score=98.08 Aligned_cols=76 Identities=21% Similarity=0.459 Sum_probs=69.1
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 40 AETDFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 40 ~~~~~~l~i~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
.++.++|||+|||. .+++++|+++|++||.|..+.+. +++|||+|.+.++|+.|+..|++..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999998873 5799999999999999999999999999999999
Q ss_pred ecCCC
Q 033218 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 98754
No 165
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=5.7e-18 Score=105.87 Aligned_cols=84 Identities=36% Similarity=0.610 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
.+.+.++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+.. ++..+.|+.|.+.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345678999999999999999999999999999999999988899999999999999999999986 8899999999999
Q ss_pred ecCCC
Q 033218 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 97654
No 166
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=4.3e-18 Score=103.41 Aligned_cols=78 Identities=21% Similarity=0.346 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCC--eEEEEEe
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVSL 119 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g--~~i~v~~ 119 (125)
....|||+|||..+++++|+++|++||.|..+.+... ..+++|||+|.+.++|+.|++.|+|..|.| +.|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4467899999999999999999999999999988643 247899999999999999999999999965 9999999
Q ss_pred cCCC
Q 033218 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
++++
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9876
No 167
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.5e-18 Score=99.93 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=70.9
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeec----HHH----HHHHHH--HhCCCe
Q 033218 44 FKLFVGNL----SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST----KAE----METALE--SLNGVE 109 (125)
Q Consensus 44 ~~l~i~~l----p~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~----~~~----a~~~~~--~l~~~~ 109 (125)
..|||+|| |+.+++.+|+.+|+.||+|..+.++.++.||.++|||||+|.+ .++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999995 333 788888 789999
Q ss_pred eCCeEEEEEecC
Q 033218 110 LEGRAMRVSLAQ 121 (125)
Q Consensus 110 ~~g~~i~v~~~~ 121 (125)
|+|+.|+|.+-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999854
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=94.34 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=65.1
Q ss_pred CCCcE-EEEcCCCCCCCHHH----HHHHHhcCC-CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeE
Q 033218 41 ETDFK-LFVGNLSWSVTTES----LTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114 (125)
Q Consensus 41 ~~~~~-l~i~~lp~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~ 114 (125)
+++.+ |||+|||.++++++ |+++|++|| .|..+ ++ |+|||.|.+.++|++|++.|+|..+.|+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34455 99999999999987 558999994 99876 23 89999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 033218 115 MRVSLAQGRR 124 (125)
Q Consensus 115 i~v~~~~~~~ 124 (125)
|+|.|++.++
T Consensus 76 i~v~~A~~~s 85 (96)
T 2diu_A 76 IIVSFTPKNR 85 (96)
T ss_dssp CEEESSCCSC
T ss_pred EEEEecCCCc
Confidence 9999998764
No 169
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=99.87 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++|||+|||..+++++|+++|++||.|..+.++. .+++|||+|.+.++|+.|+..|||..+.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999888753 46799999999999999999999999999999999976
Q ss_pred C
Q 033218 122 G 122 (125)
Q Consensus 122 ~ 122 (125)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 170
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.1e-18 Score=94.59 Aligned_cols=77 Identities=21% Similarity=0.345 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
...++|||+|||.++++++|+++|++||.|..+ +.+..++. ||||+|.+.++|++|+. |++..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 355799999999999999999999999999986 55545554 99999999999999999 9999999999999987
Q ss_pred CCC
Q 033218 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
.++
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 754
No 171
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-17 Score=92.30 Aligned_cols=77 Identities=25% Similarity=0.434 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|+ .+++++|+++|++||.|..+.+. ..+++|||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 456789999995 89999999999999999998874 3578999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 88763
No 172
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=5.6e-18 Score=93.65 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++|||+|||..+++++|+++|++| .|..+.+. .++|+|||+|.+.++|++|+..|++..+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 56789999999999999999999999 89888774 468999999999999999999999999999999999986
Q ss_pred CC
Q 033218 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 173
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=101.59 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCe----eEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNV----VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
...++|||+|||+++++++|+++|++||.| ..+.++.+ .+|.++|+|||+|.+.++|++|+.. ++..++++.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 356799999999999999999999999875 57888888 5899999999999999999999986 99999999999
Q ss_pred EEecCC
Q 033218 117 VSLAQG 122 (125)
Q Consensus 117 v~~~~~ 122 (125)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987653
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=2.8e-17 Score=95.97 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=66.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeE-EEEEeecHHHHHHHHHHhCCCeeCC--eEEEEEec
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY-GFVCYSTKAEMETALESLNGVELEG--RAMRVSLA 120 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~-~fv~f~~~~~a~~~~~~l~~~~~~g--~~i~v~~~ 120 (125)
..|||+|||..+++++|+++|++||.|..+.+... .|+ |||+|.+.++|..|+..|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34679999999999999999999999999988542 265 9999999999999999999999976 68999999
Q ss_pred CCC
Q 033218 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
+++
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 876
No 175
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.2e-17 Score=101.68 Aligned_cols=79 Identities=29% Similarity=0.505 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
++|||+|||.++++++|+++|++||.|..+.+..++ ++.++|+|||+|.+.++|..|+..+++..+.|+.|.+.++.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999884 5778999999999999999999999999999999999998654
No 176
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=6.2e-19 Score=105.07 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
....++|||+|||.++++++|+++|++|| +..+.+++++. +.++|||||+|.+.++|++|+ .+++..+.++.|.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999 77999998854 999999999999999999999 7899999999999998
Q ss_pred cCCC
Q 033218 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+.++
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7765
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=1.3e-17 Score=92.41 Aligned_cols=77 Identities=27% Similarity=0.448 Sum_probs=62.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCe--eCCeEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE--LEGRAMR 116 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~--~~g~~i~ 116 (125)
...+.++|||+|||.++++++|+++|++||.|..+.++++ ++|||||+|.+.++|++ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3457789999999999999999999999999999988764 68999999999999984 45554 5699999
Q ss_pred EEecCCCC
Q 033218 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99998764
No 178
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.75 E-value=1.3e-17 Score=105.44 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=70.6
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 42 TDFKLFVGNLS-WSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 42 ~~~~l~i~~lp-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
++++|||+||| ..+++++|+++|++||.|..++++.+ .+|+|||+|.+.++|+.|++.|||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 89999999999999999999998755 3789999999999999999999999999999999998
Q ss_pred CC
Q 033218 121 QG 122 (125)
Q Consensus 121 ~~ 122 (125)
+.
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 63
No 179
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=1.9e-18 Score=101.30 Aligned_cols=80 Identities=24% Similarity=0.328 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCee--EEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVV--GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
....++|||+|||+++++++|+++|+.| .|. .+.+++++. |.++|||||+|.+.++|++|+.. ++..++|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3467889999999999999999999999 676 889998865 99999999999999999999985 778999999999
Q ss_pred EecCC
Q 033218 118 SLAQG 122 (125)
Q Consensus 118 ~~~~~ 122 (125)
..+.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 180
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=5.7e-18 Score=98.06 Aligned_cols=76 Identities=26% Similarity=0.388 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeE-----E
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA-----M 115 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~-----i 115 (125)
...++|||+|||.++++++|+++|.+||.|..+.++.+ +||||+|.+.++|+.|++.||+..+.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999988644 79999999999999999999999999987 7
Q ss_pred EEEecCCC
Q 033218 116 RVSLAQGR 123 (125)
Q Consensus 116 ~v~~~~~~ 123 (125)
++..+.++
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776543
No 181
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=95.55 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=68.1
Q ss_pred CCCCcEEEE--cCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCee-----CC
Q 033218 40 AETDFKLFV--GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL-----EG 112 (125)
Q Consensus 40 ~~~~~~l~i--~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~-----~g 112 (125)
..+..+||| +|||.++++++|+++|++||.|..+.++. .+|||||+|.+.++|++|+..|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 346788999 77999999999999999999999887652 268999999999999999999999988 68
Q ss_pred eEEEEEecCC
Q 033218 113 RAMRVSLAQG 122 (125)
Q Consensus 113 ~~i~v~~~~~ 122 (125)
..|.|.|++.
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 8899999764
No 182
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=2e-17 Score=104.77 Aligned_cols=82 Identities=24% Similarity=0.506 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+++|||+|||.++++++|+++|+.||.|..+.++++..++.++++|||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35799999999999999999999999999999999988889999999999999999999999999999999999998866
Q ss_pred CC
Q 033218 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
.+
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 183
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=95.84 Aligned_cols=75 Identities=21% Similarity=0.424 Sum_probs=63.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCC---CCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES---GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
...++|||+|||.++++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|++|++.++ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568899999999999999999999999999 777777666 6899999999999999999999883 244554444
Q ss_pred E
Q 033218 118 S 118 (125)
Q Consensus 118 ~ 118 (125)
.
T Consensus 83 ~ 83 (114)
T 2dnl_A 83 V 83 (114)
T ss_dssp E
T ss_pred c
Confidence 4
No 184
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.73 E-value=1.1e-16 Score=91.15 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHHhcCCCeeEEEEeecCCC-CCceeEEEEEeecHHHHHHHHHHhCCCeeCCeE
Q 033218 41 ETDFKLFVGNLSW-----SVTTESLTQAFQEYGNVVGARVLYDGES-GRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114 (125)
Q Consensus 41 ~~~~~l~i~~lp~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~ 114 (125)
.++++|+|.|+.. +-++++|++.|++||.|..+.++.++.+ +.++|++||+|.+.++|.+|+..|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 2368999999999999999999987543 578999999999999999999999999999999
Q ss_pred EEEEecCC
Q 033218 115 MRVSLAQG 122 (125)
Q Consensus 115 i~v~~~~~ 122 (125)
|.+.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 185
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.72 E-value=6.5e-17 Score=99.27 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCC--CceeEEEEEeecHHHHHHHHHHhCCCeeC---CeEEE
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESG--RSRGYGFVCYSTKAEMETALESLNGVELE---GRAMR 116 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~~~~fv~f~~~~~a~~~~~~l~~~~~~---g~~i~ 116 (125)
.+++|||+|||.++++++|+++|++||.|..+.++.+..++ .++|+|||+|.+.++|++|+..|++..+. +..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999997776 89999999999999999999999998765 56777
Q ss_pred EEecCCC
Q 033218 117 VSLAQGR 123 (125)
Q Consensus 117 v~~~~~~ 123 (125)
+.++.++
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 7776543
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=9.9e-17 Score=105.51 Aligned_cols=82 Identities=22% Similarity=0.438 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLT----QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~ 114 (125)
...++++|||+|||.++++++|+ ++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|+|..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34578899999999999999977 8999999999988764 5778999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 033218 115 MRVSLAQGR 123 (125)
Q Consensus 115 i~v~~~~~~ 123 (125)
|+|.+++.+
T Consensus 82 l~v~~a~~~ 90 (282)
T 3pgw_A 82 MRIQYAKTD 90 (282)
T ss_pred EEEEEeccC
Confidence 999998654
No 187
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=5.6e-17 Score=89.29 Aligned_cols=72 Identities=21% Similarity=0.563 Sum_probs=65.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCe
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEY----G-------NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 109 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~ 109 (125)
.+.++|||+|||.++++++|+++|++| | .+..+.+..+ ++||||+|.+.++|++|+ .|++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 8888877644 689999999999999999 999999
Q ss_pred eCCeEEEEEe
Q 033218 110 LEGRAMRVSL 119 (125)
Q Consensus 110 ~~g~~i~v~~ 119 (125)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 188
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=6.5e-17 Score=94.36 Aligned_cols=77 Identities=25% Similarity=0.434 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|+ ++++++|+++|++||.|..+.+. .++|||||+|.+.++|+.|+..|++..+.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999995 69999999999999999998875 3578999999999999999999999999999999999
Q ss_pred cCCCC
Q 033218 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 98763
No 189
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=91.34 Aligned_cols=77 Identities=19% Similarity=0.379 Sum_probs=65.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEec
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~ 120 (125)
.++++|||+|||.++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++++. ....+.|..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35689999999999999999999999999999988754 68899999999999986432 134568999999998
Q ss_pred CCCC
Q 033218 121 QGRR 124 (125)
Q Consensus 121 ~~~~ 124 (125)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 190
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=4.7e-17 Score=99.34 Aligned_cols=80 Identities=29% Similarity=0.662 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
++++|||+|||.++++++|+++|+.||.|..+.++++..+|.++|+|||+|.+.++|..|+. ++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46799999999999999999999999999999999998889999999999999999999998 4678899999888876
Q ss_pred CC
Q 033218 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 191
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.69 E-value=1.3e-16 Score=102.53 Aligned_cols=78 Identities=24% Similarity=0.401 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCee
Q 033218 40 AETDFKLFVGNLSWSV---------TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~ 110 (125)
....++|||+|||..+ ++++|+.+|++||.|..+.++. .+|+|||.|.+.++|+.|+..|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 6999999999999999998874 378999999999999999999999999
Q ss_pred ------------CCeEEEEEecCCC
Q 033218 111 ------------EGRAMRVSLAQGR 123 (125)
Q Consensus 111 ------------~g~~i~v~~~~~~ 123 (125)
.|+.|.|.++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999998864
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=1.9e-16 Score=101.58 Aligned_cols=79 Identities=28% Similarity=0.477 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 40 AETDFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 40 ~~~~~~l~i~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
..++++|||+|||. ++++++|+++|++||.|..+.+..+. +|+|||+|.+.++|++|+..|++..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999998763 6899999999999999999999999999999999
Q ss_pred ecCCC
Q 033218 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98753
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-15 Score=86.54 Aligned_cols=83 Identities=17% Similarity=0.334 Sum_probs=70.1
Q ss_pred CCCCCCCcEEEEcCCCCCCC-----------HHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHh
Q 033218 37 PLYAETDFKLFVGNLSWSVT-----------TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105 (125)
Q Consensus 37 ~~~~~~~~~l~i~~lp~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l 105 (125)
...+.++++|+|.|+..... +++|+++|++||.|..+.+ .+. .++|+|||+|.+.++|.+|+..|
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 33456788999999944322 5799999999999999965 442 37899999999999999999999
Q ss_pred CCCeeCCeEEEEEecCCC
Q 033218 106 NGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 106 ~~~~~~g~~i~v~~~~~~ 123 (125)
||..+.|+.|.|.++.++
T Consensus 85 ng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp TTCEETTEECEEEECCSC
T ss_pred CCCEECCcEEEEEEeCCC
Confidence 999999999999998775
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=4.8e-17 Score=100.07 Aligned_cols=83 Identities=29% Similarity=0.508 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEE
Q 033218 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~ 118 (125)
.+.+.++|||+|||.++++++|+++|..||.+.. .++.+..++.++|+|||+|.+.++|.+|++ |++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4557899999999999999999999999986654 223333567789999999999999999994 99999999999999
Q ss_pred ecCCC
Q 033218 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 87 ~~~~~ 91 (175)
T 1fje_B 87 KPKGR 91 (175)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98754
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.66 E-value=1.4e-15 Score=99.21 Aligned_cols=78 Identities=31% Similarity=0.544 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEe
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||.++++++|+++|+.||.|..+.+.++ +|+|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 456689999999999999999999999999999988543 68999999999999999999999999999999999
Q ss_pred cCCC
Q 033218 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 8753
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=3.7e-16 Score=97.92 Aligned_cols=76 Identities=29% Similarity=0.499 Sum_probs=70.3
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 43 DFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 43 ~~~l~i~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
+++|||+|||. ++++++|+++|++||.|..+.+..+. +|+|||+|.+.++|..|+..|++..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 99999999999999999999887663 6799999999999999999999999999999999987
Q ss_pred CC
Q 033218 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
++
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.63 E-value=2.6e-15 Score=85.45 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=69.8
Q ss_pred CCCcEEEEcCC--CCCCC--------HHHHHHHHhcCCCeeEEEEeecCCC--CCceeEEEEEeecHHHHHHHHHHhCCC
Q 033218 41 ETDFKLFVGNL--SWSVT--------TESLTQAFQEYGNVVGARVLYDGES--GRSRGYGFVCYSTKAEMETALESLNGV 108 (125)
Q Consensus 41 ~~~~~l~i~~l--p~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~~~~fv~f~~~~~a~~~~~~l~~~ 108 (125)
.+++.|.|.|+ |..+. +++|++.|++||.|..+.++++..+ +.++|++||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46778899887 44443 3689999999999999999887544 357899999999999999999999999
Q ss_pred eeCCeEEEEEecCC
Q 033218 109 ELEGRAMRVSLAQG 122 (125)
Q Consensus 109 ~~~g~~i~v~~~~~ 122 (125)
.+.|+.|++.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998653
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.62 E-value=6.2e-15 Score=85.45 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCC--CC---CHHHHHHHHhcCCCeeEEEEeecCC----CCCceeEEEEEeecHHHHHHHHHHhCCCeeCC
Q 033218 42 TDFKLFVGNLSW--SV---TTESLTQAFQEYGNVVGARVLYDGE----SGRSRGYGFVCYSTKAEMETALESLNGVELEG 112 (125)
Q Consensus 42 ~~~~l~i~~lp~--~~---~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g 112 (125)
++++|+|.|+-. ++ .+++|++.|++||.|..+.++.+.. ++..+|++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 577899998843 22 3589999999999999999988754 35678999999999999999999999999999
Q ss_pred eEEEEEecC
Q 033218 113 RAMRVSLAQ 121 (125)
Q Consensus 113 ~~i~v~~~~ 121 (125)
+.|.+.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999864
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=9.6e-15 Score=89.40 Aligned_cols=75 Identities=19% Similarity=0.539 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCee
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEY----G-------NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~ 110 (125)
++++|||+|||.++++++|+++|++| | .+..+.+. ..+|+|||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46799999999999999999999999 6 55655543 24789999999999999999 8999999
Q ss_pred CCeEEEEEecCCC
Q 033218 111 EGRAMRVSLAQGR 123 (125)
Q Consensus 111 ~g~~i~v~~~~~~ 123 (125)
.|+.|.+.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=1.4e-15 Score=86.41 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=62.3
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEE
Q 033218 48 VGNLSWSVTTESLTQAF------------QEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 48 i~~lp~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i 115 (125)
..|||..+++++|++.| ++||.|..+.++++. ++.++|+|||+|.+.++|.+|+..|||..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666777777666555 999999999998874 47889999999999999999999999999999999
Q ss_pred EEEec
Q 033218 116 RVSLA 120 (125)
Q Consensus 116 ~v~~~ 120 (125)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=1.5e-14 Score=90.38 Aligned_cols=75 Identities=19% Similarity=0.545 Sum_probs=64.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCee
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEY----G-------NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~ 110 (125)
.+++|||+|||.++++++|+++|+.| | .+..+.+ +.++|+|||+|.+.++|++|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46799999999999999999999999 4 4554444 345789999999999999999 8999999
Q ss_pred CCeEEEEEecCCC
Q 033218 111 EGRAMRVSLAQGR 123 (125)
Q Consensus 111 ~g~~i~v~~~~~~ 123 (125)
.|+.|.|.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999997654
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.52 E-value=1.1e-13 Score=93.12 Aligned_cols=78 Identities=24% Similarity=0.344 Sum_probs=65.5
Q ss_pred CCCCCCcEEEEcC--CCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC---C
Q 033218 38 LYAETDFKLFVGN--LSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE---G 112 (125)
Q Consensus 38 ~~~~~~~~l~i~~--lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~---g 112 (125)
....++.+|||+| |+..+++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3456788999998 578899999999999999998876642 4789999999999999999999998872 3
Q ss_pred e--EEEEEecC
Q 033218 113 R--AMRVSLAQ 121 (125)
Q Consensus 113 ~--~i~v~~~~ 121 (125)
. .|.+.|+.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 4 57777764
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-13 Score=77.22 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 033218 53 WSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 53 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
..+++++|+++|++||.|..+.++ +.++|||||+|.+.++|+.|++.+++ +.++.|+|.+++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 468999999999999999999887 35789999999999999999997554 578999999988663
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.46 E-value=1e-12 Score=75.67 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=64.5
Q ss_pred CCCCcEEEEcCCCCCC----------CHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCe
Q 033218 40 AETDFKLFVGNLSWSV----------TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 109 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~----------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~ 109 (125)
+.+++.|.|.|+=... .+++|++.|++||.|..+.+.++. .+|++||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3456778887764422 125889999999999999886552 48999999999999999999999999
Q ss_pred eCCeEEEEEecC
Q 033218 110 LEGRAMRVSLAQ 121 (125)
Q Consensus 110 ~~g~~i~v~~~~ 121 (125)
++|+.|.+.|+.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999975
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=7.6e-12 Score=68.38 Aligned_cols=75 Identities=24% Similarity=0.327 Sum_probs=63.0
Q ss_pred CCCCcEEEEcCCCC----CCCH----HHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC
Q 033218 40 AETDFKLFVGNLSW----SVTT----ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 40 ~~~~~~l~i~~lp~----~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~ 111 (125)
.+++.+|.|.-.|. .+.. .+|.+.|.+||.+..++++.+. +||+|.+.+.|.+|+. |+|..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 45677888877662 3333 6789999999999999998762 8999999999999998 9999999
Q ss_pred CeEEEEEecCCC
Q 033218 112 GRAMRVSLAQGR 123 (125)
Q Consensus 112 g~~i~v~~~~~~ 123 (125)
|+.|+|+++.+.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998764
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.5e-11 Score=71.11 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=66.1
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeec-HHHHHHHHHHhC--CCeeCCeE
Q 033218 39 YAETDFKLFVGNLSWS-VTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST-KAEMETALESLN--GVELEGRA 114 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~-~~~a~~~~~~l~--~~~~~g~~ 114 (125)
.-++++.|+|+|++.. ++.++|+++|++||.|.++.+..+.. .|||+|.+ .++|..++..++ +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3467899999999999 99999999999999999998877643 59999999 899999999995 57788887
Q ss_pred EEEEecC
Q 033218 115 MRVSLAQ 121 (125)
Q Consensus 115 i~v~~~~ 121 (125)
+.+....
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 7776543
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=5.2e-11 Score=65.41 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=62.9
Q ss_pred CCCCCcEEEEcCCCCC-----CCH----HHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCe
Q 033218 39 YAETDFKLFVGNLSWS-----VTT----ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 109 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~ 109 (125)
..+++.+|.|.-++.+ +.. .+|.+.|..||.+..++++.+. +||+|.+.+.|.+|+. |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 4567788999887632 322 5689999999999999998772 9999999999999998 99999
Q ss_pred eCCeEEEEEecCC
Q 033218 110 LEGRAMRVSLAQG 122 (125)
Q Consensus 110 ~~g~~i~v~~~~~ 122 (125)
+.|+.|+|++..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999998543
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.10 E-value=4.7e-10 Score=71.39 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=59.0
Q ss_pred CHHHHHHHHhcCCCeeEEEEeecCC----CCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 56 TTESLTQAFQEYGNVVGARVLYDGE----SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 56 ~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+++|+..|++||.|..+.+..+.. ++.++|++||+|.+.++|.+|+..|+|..+.|+.|.+.|..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4578999999999999999886543 34789999999999999999999999999999999999864
No 209
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.99 E-value=3.2e-10 Score=65.24 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCC---CCCCCCcEEEEcCCCCCCCHHH
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP---LYAETDFKLFVGNLSWSVTTES 59 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~---~~~~~~~~l~i~~lp~~~~~~~ 59 (125)
|.+.++|++|++.|||..+.|++|+|.++.++..... ........|||+|||+++|++.
T Consensus 52 f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 52 FETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC----------------------------
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 7899999999999999999999999999876554332 2233456799999999998763
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.89 E-value=2.6e-08 Score=55.94 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC-----CCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEY-----GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
..++|-|.|||..++...|+.++.++ |.+..+.+.-+ .+.|+|+|.+...|.+|.-.|+|..+.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 45789999999999999999999999 98888877655 24599999999999999999999999999999
Q ss_pred EEe
Q 033218 117 VSL 119 (125)
Q Consensus 117 v~~ 119 (125)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 853
No 211
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.51 E-value=4.7e-08 Score=54.64 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCC-----CCCCcEEEEcCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLY-----AETDFKLFVGNLS 52 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~-----~~~~~~l~i~~lp 52 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.+........ ......+||+||+
T Consensus 44 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 44 FEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred ECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 789999999999999999999999999987655432211 1236789999986
No 212
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.34 E-value=6.4e-08 Score=55.34 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhcCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGN 69 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~ 69 (125)
|.+.++|.+|+..|||..+.|+.|.|.++.+.... .+++....++++.++|++||.
T Consensus 54 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 54 YEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF-------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT-------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh-------------hhhhHhHhHHHHHHHHHHhCC
Confidence 67899999999999999999999999998754322 467778889999999999984
No 213
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=5.4e-06 Score=45.66 Aligned_cols=35 Identities=11% Similarity=0.304 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++.|||..+.|++|+|.|+......
T Consensus 53 F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 53 FINQDSAERAQKRMENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp ESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred ECCHHHHHHHHHHhcCCccCCceEEEEecCCCcce
Confidence 78999999999999999999999999998876543
No 214
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.08 E-value=3.1e-05 Score=43.20 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=60.1
Q ss_pred CcEEEEcCCCCCC-CH----HHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEEE
Q 033218 43 DFKLFVGNLSWSV-TT----ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 43 ~~~l~i~~lp~~~-~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v 117 (125)
..+|+|.|++.++ .. +.++.+|..|+..........- + -..|.|.+.++|.+|-..||+..+.|..+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4579999998865 22 5779999999988876655442 2 2589999999999999999999999999999
Q ss_pred EecCC
Q 033218 118 SLAQG 122 (125)
Q Consensus 118 ~~~~~ 122 (125)
-|+++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 88764
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.07 E-value=4.9e-05 Score=41.85 Aligned_cols=57 Identities=25% Similarity=0.351 Sum_probs=46.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHh
Q 033218 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l 105 (125)
+...+.++| ++|..+...+|.++|+.||.+ .+..+-+ ..||+.|.+++.|..+++.+
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 445677888 999999999999999999833 3455544 25999999999999999876
No 216
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.04 E-value=1.1e-05 Score=44.07 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhcCC-CccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDG-REYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~-~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..||| ..+.|+.|+|.++.++...
T Consensus 51 f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 51 YPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp CSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred ECCHHHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence 7899999999999999 9999999999999876544
No 217
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=6.9e-06 Score=45.31 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|++.|||..+.|++|+|.++.+..
T Consensus 59 f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 59 MENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 679999999999999999999999999987654
No 218
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.01 E-value=1.1e-05 Score=44.62 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 36 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~ 36 (125)
|.+.++|.+|+..|||..+.|++|+|.++.++....
T Consensus 57 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 57 FMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEAS 92 (99)
T ss_dssp ESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTTC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcccc
Confidence 689999999999999999999999999998776543
No 219
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=1.4e-05 Score=44.41 Aligned_cols=36 Identities=33% Similarity=0.540 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 36 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~ 36 (125)
|.+.++|.+|++.|||..+.|+.|+|.++.+.....
T Consensus 61 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 61 FELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp CSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCCC
Confidence 789999999999999999999999999988765443
No 220
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.96 E-value=8.8e-06 Score=43.43 Aligned_cols=33 Identities=24% Similarity=0.606 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+..|||..+.|++|+|.++.+++
T Consensus 50 f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 50 FTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred ECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 689999999999999999999999999987653
No 221
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=1.3e-05 Score=43.55 Aligned_cols=35 Identities=34% Similarity=0.534 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|++|+..|||..+.|+.|+|.++.+....
T Consensus 50 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 50 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 68999999999999999999999999998776443
No 222
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.95 E-value=4.2e-06 Score=45.64 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++.|||..+.|+.|+|.++.++...
T Consensus 52 f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 52 VGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEHH 86 (90)
T ss_dssp C-CHHHHHHHHHHGGGSCSSSCCCEECCC------
T ss_pred ECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCccc
Confidence 78999999999999999999999999998766433
No 223
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=1.7e-05 Score=43.55 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|+|.++.++...
T Consensus 55 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 55 FASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp BSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCC
Confidence 78999999999999999999999999998776544
No 224
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=1.7e-05 Score=44.08 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..|.|+.|+|.++.++...
T Consensus 61 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 61 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 78999999999999999999999999999876544
No 225
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=1.9e-05 Score=43.82 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|++|+..|||..+.|+.|+|.++.++...
T Consensus 60 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 60 FASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP 94 (101)
T ss_dssp CSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCC
T ss_pred ECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCC
Confidence 78999999999999999999999999998776543
No 226
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=1.6e-05 Score=43.40 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.++...
T Consensus 51 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 51 MERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp ESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred ECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence 68999999999999999999999999999776543
No 227
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.92 E-value=2e-05 Score=44.76 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|++|++.||+..|.|+.|+|.++.++...
T Consensus 74 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 74 YDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 108 (115)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcC
Confidence 78999999999999999999999999998876544
No 228
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.91 E-value=1.5e-05 Score=43.36 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..+|+..+.|++|+|.++.++...
T Consensus 49 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 49 IEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp ESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred ECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 68999999999999999999999999998876544
No 229
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.91 E-value=1.1e-05 Score=43.51 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.++.
T Consensus 54 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 54 FENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred EecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 689999999999999999999999999987654
No 230
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.89 E-value=1.9e-05 Score=43.53 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.+....
T Consensus 57 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 57 YKKPEQAQKALKQLQGHTVDGHKLEVRISERATKP 91 (98)
T ss_dssp ESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCC
T ss_pred ECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCC
Confidence 68999999999999999999999999998766543
No 231
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=2e-05 Score=43.90 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..|.|+.|+|.++.++...
T Consensus 64 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 64 FHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp ESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCS
T ss_pred ECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCC
Confidence 68999999999999999999999999998876544
No 232
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=2.2e-05 Score=43.31 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|+|.++.++...
T Consensus 56 f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 56 YEKMESADQAVAELNGTQVESVQLKVNIARKQPML 90 (97)
T ss_dssp ESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCC
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCC
Confidence 67899999999999999999999999998766543
No 233
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.88 E-value=2.7e-05 Score=43.40 Aligned_cols=36 Identities=17% Similarity=0.438 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 36 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~ 36 (125)
|.+.++|.+|+..||+..+.|+.|+|.++.++....
T Consensus 52 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 52 FDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred eCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 689999999999999999999999999987665443
No 234
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.88 E-value=0.00016 Score=39.55 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=55.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC--ceeEEEEEeecHHHHHHHHHHhCCCeeC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR--SRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~~~~fv~f~~~~~a~~~~~~l~~~~~~ 111 (125)
++|.|..||+.++++++.+.++....+....+.....+.+ ...-|+|.|.+.++.....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4688999999999999999999998877776665544333 3445899999999999999999998873
No 235
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.88 E-value=2.3e-05 Score=43.36 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.+...
T Consensus 58 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 58 FSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp ESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred eCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 6899999999999999999999999999877654
No 236
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.87 E-value=1.2e-05 Score=43.71 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|.+.++|++|++.||+..+.|++|+|++++
T Consensus 50 y~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 50 YTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 678999999999999999999999999863
No 237
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=2.7e-05 Score=43.34 Aligned_cols=35 Identities=26% Similarity=0.585 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.++...
T Consensus 62 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 62 FYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred ECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 68999999999999999999999999998876543
No 238
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=1.5e-05 Score=45.13 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|++|++.|||..+.|++|+|.++.++.
T Consensus 70 f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 70 YIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred ECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 688999999999999999999999999987664
No 239
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.85 E-value=2.4e-05 Score=45.73 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhcCCCccCC--eEEEEeccCCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLG--RILRVNFSDKPKPKL 36 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~--~~i~v~~~~~~~~~~ 36 (125)
|.+.++|.+|++.|||..|.| +.|+|+|++......
T Consensus 73 f~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~v 110 (130)
T 3zzy_A 73 YADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNV 110 (130)
T ss_dssp ESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCCC
T ss_pred ECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCceeE
Confidence 689999999999999999988 899999998765443
No 240
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=1.7e-05 Score=44.10 Aligned_cols=35 Identities=20% Similarity=0.462 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++.||+..+.|++|+|.++.++...
T Consensus 61 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 61 FENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp CSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 78999999999999999999999999998766543
No 241
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=2.6e-05 Score=43.41 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..|.|+.|+|.++.++...
T Consensus 62 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 62 FENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 68999999999999999999999999998876544
No 242
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.84 E-value=1.1e-05 Score=45.44 Aligned_cols=30 Identities=27% Similarity=0.716 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|.+.++|.+|+..|||+.+.|+.|++.+..
T Consensus 66 f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 66 FTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 689999999999999999999999999864
No 243
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=2.8e-05 Score=43.76 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|++|++.||+..|.|+.|+|.++.+....
T Consensus 68 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 68 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 102 (109)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCCC
Confidence 68999999999999999999999999998776543
No 244
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=1.8e-05 Score=43.62 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.++.
T Consensus 63 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 63 YPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 789999999999999999999999999987654
No 245
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=1.9e-05 Score=43.74 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.++..
T Consensus 65 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 65 YENESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp ESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 6899999999999999999999999999886643
No 246
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=3e-05 Score=44.01 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|+|.++.+....
T Consensus 74 f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 74 FPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQR 108 (115)
T ss_dssp CSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCC
Confidence 78999999999999999999999999999876554
No 247
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=2.1e-05 Score=43.77 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.++...
T Consensus 62 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 62 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 96 (103)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCC
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccC
Confidence 68999999999999999999999999998876544
No 248
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=2.1e-05 Score=43.06 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|+|.++.++...
T Consensus 54 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 54 FSDSECARRALEQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp ESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred ECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence 68999999999999999999999999998776543
No 249
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.82 E-value=3.4e-05 Score=44.03 Aligned_cols=35 Identities=17% Similarity=0.453 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|++|++.|||..+.|+.|+|.++.++...
T Consensus 55 F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 55 FENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp CSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCS
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 78999999999999999999999999998765543
No 250
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.82 E-value=3e-05 Score=42.34 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHhc-CCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENL-DGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~-~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|++.+ ++..+.|++|+|.|+.++..
T Consensus 51 F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 51 FSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp CSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred ecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 78999999999987 45789999999999876643
No 251
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.82 E-value=1.5e-05 Score=45.51 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|.+.++|.+|+..|||+.+.|+.|.+.|+.
T Consensus 62 f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 62 CPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 789999999999999999999999999863
No 252
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=3.2e-05 Score=43.75 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..|.|+.|+|.++.++...
T Consensus 72 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 72 YEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp BSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred ECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 78999999999999999999999999998876543
No 253
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.82 E-value=1.3e-05 Score=43.18 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.++
T Consensus 55 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 55 FFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 68999999999999999999999999998754
No 254
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.81 E-value=1.4e-05 Score=44.94 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+|+.+|||+.+.|+.|.|.++..
T Consensus 63 f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 63 FERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred ECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 6899999999999999999999999998754
No 255
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=2.1e-05 Score=43.38 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|++|++.|||..|.|+.|+|.++..+
T Consensus 64 f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 64 FESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp ESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred ECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 68999999999999999999999999998754
No 256
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=2.8e-05 Score=44.09 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+..|||..+.|++|+|.++.+..
T Consensus 71 f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 71 FRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 789999999999999999999999999987654
No 257
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.80 E-value=1.9e-05 Score=44.93 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|++|++.|||..+.|+.|+|.++..+
T Consensus 74 F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 74 FPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp ESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 68999999999999999999999999998654
No 258
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.80 E-value=2.2e-05 Score=43.09 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..+||..+.|+.|+|.++.++..
T Consensus 60 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 60 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp ESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 6799999999999999999999999999876643
No 259
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.80 E-value=0.00044 Score=39.59 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=57.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeC-CeEEEEEe
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE-GRAMRVSL 119 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~-g~~i~v~~ 119 (125)
...+-|.|.+.|... ...+...|.+||.|...... ....|-.+.|.++.+|++|+.. ||..+. +..|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 356789999999986 46678889999999987652 1246899999999999999984 888887 46777766
Q ss_pred c
Q 033218 120 A 120 (125)
Q Consensus 120 ~ 120 (125)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 260
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.78 E-value=2.1e-05 Score=43.25 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++.|||..+.|+.|+|.++.++...
T Consensus 51 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 51 FRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDIS 85 (96)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSCSSGG
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCCC
Confidence 67999999999999999999999999998876543
No 261
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.78 E-value=3.3e-05 Score=41.81 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|++.+||..+.|++|+|.++...
T Consensus 47 f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 47 LLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred ECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 78999999999999999999999999997644
No 262
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.78 E-value=3.7e-05 Score=43.25 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|+|.|+.+....
T Consensus 68 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 68 FSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 68999999999999999999999999998776543
No 263
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.77 E-value=4.7e-05 Score=43.21 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|++|+..|||..|.|+.|+|.++......
T Consensus 64 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 64 FFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp ESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 68999999999999999999999999998765543
No 264
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.76 E-value=4.3e-05 Score=44.32 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhcCCCccCC--eEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLG--RILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~--~~i~v~~~~~~~~~ 35 (125)
|.+.++|..|++.|||..|.| +.|+|.++.++...
T Consensus 69 f~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~ 105 (124)
T 2e5i_A 69 FESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 105 (124)
T ss_dssp ESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCC
T ss_pred ECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcce
Confidence 679999999999999999987 68999999876543
No 265
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=3.2e-05 Score=43.15 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|+|.++.+....
T Consensus 64 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 64 FLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp ESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 68999999999999999999999999998776544
No 266
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.76 E-value=5.9e-05 Score=41.64 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=45.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 106 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~ 106 (125)
+.+.++| ++|..+...+|.++|+.|| ...+..+-+ ..||+.|.+++.|..++..+.
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3466777 9999999999999999998 444555544 259999999999999999774
No 267
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=3.7e-05 Score=41.76 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+. +||..|.|+.|+|.++.++.
T Consensus 57 f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 57 FSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp CSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred ECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 789999999999 99999999999999987664
No 268
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.75 E-value=2.2e-05 Score=42.06 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 56 f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 56 FELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 688999999999999999999999999863
No 269
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.75 E-value=2e-05 Score=45.93 Aligned_cols=33 Identities=30% Similarity=0.603 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|..|+..|||..+.|++|+|.|+..+.
T Consensus 79 F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 79 FATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp ESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred ECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 689999999999999999999999999987654
No 270
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=2.6e-05 Score=42.83 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+..|||..+.|++|+|.++.+++
T Consensus 61 f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 61 YSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp ESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 678999999999999999999999999988763
No 271
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.73 E-value=2e-05 Score=45.33 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|.+.++|.+|+..|||+.+.|+.|.+.+..
T Consensus 78 F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 78 FSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 689999999999999999999999999865
No 272
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.73 E-value=3.1e-05 Score=42.55 Aligned_cols=33 Identities=9% Similarity=0.405 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.+..
T Consensus 58 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 58 FKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred eCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 679999999999999999999999999987654
No 273
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=5.9e-05 Score=42.41 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCCccCC-----eEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLG-----RILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~-----~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+||+.|||..+.| +.|+|.++.++...
T Consensus 57 f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 57 FVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp ESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred ECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 689999999999999999999 99999998776544
No 274
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.72 E-value=2.7e-05 Score=44.15 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|++|++.|||..+.|+.|+|.++...
T Consensus 55 f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 55 FTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 68999999999999999999999999987543
No 275
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.72 E-value=2.7e-05 Score=47.21 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhcCCCccCC--eEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLG--RILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~--~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++.|||..|.| +.|+|+|+.++...
T Consensus 91 F~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~ 127 (164)
T 1sjr_A 91 YADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLN 127 (164)
T ss_dssp ESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCC
T ss_pred ECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCccc
Confidence 689999999999999999965 99999999876543
No 276
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=4.7e-05 Score=42.56 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhc-CCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENL-DGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~-~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..| |+..|.|+.|+|.++.+....
T Consensus 65 f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 65 FITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp ESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred ECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCC
Confidence 68999999999999 999999999999998876544
No 277
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.72 E-value=3.1e-05 Score=42.65 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCCCccC--CeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYL--GRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~--~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|++.|||..+. |+.|+|.++.++.
T Consensus 60 f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 60 YESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp ESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred ECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 67999999999999999999 9999999988664
No 278
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.72 E-value=4.1e-05 Score=43.16 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+..|||..+.|+.|.|.++.+..
T Consensus 72 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 72 FEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 789999999999999999999999999987654
No 279
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.71 E-value=3.1e-05 Score=42.33 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+|+..|||..+.|++|+|.++..
T Consensus 64 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 64 FENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 6899999999999999999999999998763
No 280
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.70 E-value=3.7e-05 Score=43.35 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|+|.++..++..
T Consensus 69 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 69 YSNERHARAAVLGENGRVLAGQTLDINMAGEPKPD 103 (110)
T ss_dssp CSSSHHHHHHHHHHTTCEETTEECCEEESCCCCSC
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCCC
Confidence 78899999999999999999999999998765443
No 281
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=2e-05 Score=43.87 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|+|.++......
T Consensus 62 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 62 FHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRD 96 (103)
T ss_dssp ESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSC
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCC
Confidence 67889999999999999999999999998765443
No 282
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.69 E-value=4.4e-05 Score=42.17 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|++.|||..+.|++|+|.++.++..
T Consensus 58 f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 58 LETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred ECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 7889999999999999999999999999877643
No 283
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.69 E-value=3.9e-05 Score=42.37 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|+..+||..+.|+.|+|.++...
T Consensus 64 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 64 FDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp ESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 67899999999999999999999999998754
No 284
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.68 E-value=6.2e-05 Score=43.31 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..+||..+.|+.|+|.++......
T Consensus 83 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 83 FERRADALKAMKQYKGVPLDGRPMDIQLVASQIDL 117 (124)
T ss_dssp ESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTCC
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCC
Confidence 68999999999999999999999999998765544
No 285
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.66 E-value=3.5e-05 Score=42.68 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++ |||..+.|+.|+|.++.++...
T Consensus 65 f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~~ 98 (101)
T 1fj7_A 65 FESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDGT 98 (101)
T ss_dssp ESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCCCS
T ss_pred ECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCCCC
Confidence 689999999999 9999999999999998876543
No 286
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.66 E-value=4.3e-05 Score=42.50 Aligned_cols=33 Identities=36% Similarity=0.575 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|++.+||..+.|+.|+|.++.+..
T Consensus 57 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 57 YQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp CSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred ECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 789999999999999999999999999987654
No 287
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.66 E-value=5.9e-05 Score=41.93 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+ .|||..+.|+.|+|.++.+....
T Consensus 63 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 63 FDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp ESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCC
T ss_pred ECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCC
Confidence 68999999999 79999999999999998876543
No 288
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.65 E-value=3.7e-05 Score=42.04 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|.+.++|.+|++.||+..+.|++|+|.++.
T Consensus 64 f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 64 FESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred ECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 678999999999999999999999999875
No 289
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=8.2e-05 Score=42.07 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+..|||..+.|+.|+|.++....
T Consensus 63 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 95 (114)
T 2do0_A 63 FEQSIEAVQAISMFNGQLLFDRPMHVKMDERAL 95 (114)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSCCC
T ss_pred ECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCC
Confidence 678999999999999999999999999986543
No 290
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.64 E-value=2.9e-05 Score=42.25 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.+...
T Consensus 55 f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 55 FESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp ESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 6789999999999999999999999999876643
No 291
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=6.8e-05 Score=41.35 Aligned_cols=34 Identities=9% Similarity=0.280 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++ +|+..+.|+.|+|.++.++...
T Consensus 59 f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 59 FEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp ESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCCC
T ss_pred ECCHHHHHHHHH-hCCCEECCeEEEEEECCCCccc
Confidence 689999999999 9999999999999998876544
No 292
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.62 E-value=5.9e-05 Score=43.43 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.+...
T Consensus 80 f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 80 YEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 7899999999999999999999999999876643
No 293
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.61 E-value=0.00011 Score=42.97 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++.|||..+.|+.|+|.++......
T Consensus 91 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 91 FQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp ESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 68999999999999999999999999998776544
No 294
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.59 E-value=6.8e-05 Score=41.79 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCCccCC---eEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLG---RILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~---~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.| ++|+|.++......
T Consensus 63 f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 63 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKES 100 (105)
T ss_dssp ESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred eCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCccc
Confidence 689999999999999999998 99999999876544
No 295
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.58 E-value=4.4e-05 Score=41.74 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|.+.++|.+|+..|||..+.|++|+|.++.
T Consensus 64 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 64 FKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp ESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred ECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 678999999999999999999999999875
No 296
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.58 E-value=9.6e-05 Score=41.14 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+ .||+..+.|+.|+|.++.++...
T Consensus 64 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 64 FEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp ESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCC
T ss_pred ECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCC
Confidence 68999999999 89999999999999998876544
No 297
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.58 E-value=5.9e-05 Score=41.56 Aligned_cols=33 Identities=9% Similarity=0.406 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeE----EEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRI----LRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~----i~v~~~~~~~ 33 (125)
|.+.++|.+|+..|||..+.|+. |+|.|+.+..
T Consensus 59 f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 59 FADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp CSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred eCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 78999999999999999999999 9999987654
No 298
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.57 E-value=0.00012 Score=41.08 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhcC------CCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLD------GREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~------~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..+| +..+.|+.|+|.++.++...
T Consensus 64 f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 64 FMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp ESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred ECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccC
Confidence 689999999999999 99999999999998776544
No 299
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.57 E-value=6.2e-05 Score=42.62 Aligned_cols=32 Identities=6% Similarity=0.041 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|+..|||..+.|++|+|.|+...
T Consensus 53 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 53 FLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp ESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred eCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 68899999999999999999999999998653
No 300
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=7.5e-05 Score=40.82 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+. +||..+.|+.|.|.++..+...
T Consensus 52 f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 52 MGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp ESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCCC
T ss_pred ECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCCC
Confidence 678999999999 9999999999999988765443
No 301
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=0.0026 Score=35.35 Aligned_cols=70 Identities=26% Similarity=0.262 Sum_probs=53.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhc-----CCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCCCeeCCeEEE
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQE-----YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~-----~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~ 116 (125)
...+|.|.|+|..+.++.|.-.|+. -|.+..+.... +-|+|.|.+...|++.++. ..+.+.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4578999999999999999999976 24666665421 3589999999999999873 25677778888
Q ss_pred EEec
Q 033218 117 VSLA 120 (125)
Q Consensus 117 v~~~ 120 (125)
|...
T Consensus 78 V~P~ 81 (104)
T 2dhx_A 78 LRPA 81 (104)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 7653
No 302
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.54 E-value=2.7e-05 Score=42.83 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|++|+|.++.....
T Consensus 52 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 52 FDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp ESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred ECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 6899999999999999999999999999865543
No 303
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.53 E-value=0.0001 Score=43.43 Aligned_cols=34 Identities=15% Similarity=0.428 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|+.|.|.++.....
T Consensus 99 f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 99 LPNEKAAAKALKEANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp CSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred eCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 7899999999999999999999999999876543
No 304
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=6.4e-05 Score=40.99 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+|+. |||..+.|+.|+|+++++
T Consensus 56 F~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 56 FLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp ESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred ECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 678999999999 999999999999998764
No 305
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.52 E-value=5.3e-05 Score=42.25 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHhcCCCc--cCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGRE--YLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~--~~~~~i~v~~~~~~~ 33 (125)
|++.++|.+|++.+++.. +.|++|+|+|+..++
T Consensus 64 f~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 64 FEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp ESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred ECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 689999999999999875 789999999987653
No 306
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=8.5e-05 Score=41.29 Aligned_cols=35 Identities=6% Similarity=0.100 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHhcCCCc-cCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGRE-YLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~-~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||.. +.|++|+|.++.++...
T Consensus 58 f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 58 FTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp ESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred ECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcC
Confidence 689999999999999999 99999999998765543
No 307
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.49 E-value=0.00012 Score=40.85 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhcCCCcc---CCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREY---LGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~---~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++.|||..+ .|++|+|.++.+....
T Consensus 62 f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 62 YCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp ESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred ECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 6789999999999999887 8899999998876543
No 308
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.49 E-value=7.2e-05 Score=41.85 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHhcCCC--ccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGR--EYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~--~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|++.||+. .+.|++|+|.++...+..
T Consensus 59 f~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 59 MATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRI 95 (102)
T ss_dssp ESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTTS
T ss_pred ECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCCC
Confidence 68999999999998864 599999999999865443
No 309
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.48 E-value=7.5e-05 Score=41.19 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHhcCCC----ccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGR----EYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~----~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+|++.|||. .+.|++|.|.|+..
T Consensus 60 f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 60 LSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred ECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 78999999999999996 48999999999864
No 310
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.47 E-value=6.8e-05 Score=41.59 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHhcCCCccCC-eEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGREYLG-RILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~-~~i~v~~~~~ 31 (125)
|.+.++|.+|+..|||..+.| +.|+|.++.+
T Consensus 61 f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 61 CGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred ECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 688999999999999999999 9999998754
No 311
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.46 E-value=6.9e-05 Score=40.06 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHhc-CCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENL-DGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~-~~~~~~~~~i~v~~~~ 30 (125)
|.+.++|.+|+..| +|..+.|++|+|.|++
T Consensus 55 f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 55 FATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp ESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred ECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 67999999999999 9999999999999863
No 312
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.46 E-value=6.3e-05 Score=42.09 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCe-EEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGR-ILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~-~i~v~~~~~~ 32 (125)
|.+.++|.+|+..|||..+.|+ +|+|.++...
T Consensus 68 f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 68 YASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp ECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred ECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 6788999999999999999998 9999998754
No 313
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.45 E-value=8.1e-05 Score=40.10 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|+ .+||..+.|+.|+|.++.+.
T Consensus 55 f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 55 FSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp ESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred ECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 67899999999 89999999999999998754
No 314
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.44 E-value=0.00014 Score=43.49 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..||+..|.|+.|+|.|+.+....
T Consensus 88 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 88 YYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp ESSHHHHHHHHHHTTTSEETTEECEEEEESCCCTT
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCc
Confidence 68999999999999999999999999999765543
No 315
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.43 E-value=7.6e-05 Score=43.02 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 71 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 71 YETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred ECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 6899999999999999999999999999865543
No 316
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=9.7e-05 Score=41.42 Aligned_cols=35 Identities=9% Similarity=0.140 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHhcCC--CccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDG--REYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~--~~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|++.+++ ..+.|++|+|.|+..+...
T Consensus 58 f~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 58 FENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp ESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 6899999999998876 4599999999998766544
No 317
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.40 E-value=0.00019 Score=40.24 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcC--CCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLD--GREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~--~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|| +..+.|+.|+|.|+.+....
T Consensus 59 f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 59 YESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp ESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred ecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 678999999999996 59999999999998766543
No 318
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.32 E-value=0.00022 Score=40.68 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhcCCCcc-----CCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREY-----LGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~-----~~~~i~v~~~~~~ 32 (125)
|.+.++|++|+++|||..+ .|++|.|.|+...
T Consensus 70 f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 70 YRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp ESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred ECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 6899999999999999988 6889999987644
No 319
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.31 E-value=0.00014 Score=37.84 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEecc
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~ 29 (125)
|.+.++|++|++ +||..+.|++|.|.++
T Consensus 48 f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 48 FESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred ECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 789999999998 9999999999999874
No 320
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.30 E-value=5.3e-05 Score=41.00 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.+ |.+|+..|||..+.|++|+|.++.+...
T Consensus 50 f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 50 MQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp ECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred ECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 67888 9999999999999999999999876543
No 321
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.27 E-value=0.00038 Score=39.97 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhcC--CCccCCeEEEEeccCCCCCCC
Q 033218 1 MSTVEDCNAVIENLD--GREYLGRILRVNFSDKPKPKL 36 (125)
Q Consensus 1 f~~~~~a~~a~~~~~--~~~~~~~~i~v~~~~~~~~~~ 36 (125)
|++.++|.+|++.++ +..+.|++|+|.|+..+....
T Consensus 74 F~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 74 MNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp CSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred ECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCc
Confidence 789999999999887 478999999999987665443
No 322
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.27 E-value=0.00043 Score=38.52 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHhc--CCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENL--DGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~--~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|++.+ ++..+.|++|+|.|+..+...
T Consensus 58 f~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 58 LATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp ESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCC
T ss_pred ECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCc
Confidence 68999999999976 568899999999998866544
No 323
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.37 E-value=4e-05 Score=43.62 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|+|.++.++...
T Consensus 64 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 64 FDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 77899999999999999999999999998766543
No 324
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.25 E-value=0.00024 Score=39.93 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHhcC--CCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLD--GREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~--~~~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|++.++ +..+.|++|+|.|+..+...
T Consensus 59 F~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 59 MNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp ESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 689999999999886 47899999999998765443
No 325
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.24 E-value=0.00043 Score=39.23 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|++.+++ .+.|+.|+|.++....
T Consensus 66 f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 66 MADRAAAERACKDPNP-IIDGRKANVNLAYLGA 97 (116)
T ss_dssp ESSHHHHHHHHTCSSC-EETTEECEEEESTTTC
T ss_pred ECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCC
Confidence 6899999999999998 8999999999986543
No 326
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.21 E-value=0.00059 Score=38.63 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+.. ++..|.|+.|+|.++.++...
T Consensus 76 f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 76 FSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREES 109 (116)
T ss_dssp CSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCCC
T ss_pred eCCHHHHHHHHHh-CCcEECCEEEEEEECCCCccC
Confidence 7899999999997 999999999999998876544
No 327
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.21 E-value=0.00026 Score=42.53 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+|+..|||..|.|+.|+|.++.+
T Consensus 106 f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 106 VASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp ESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred ECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 6899999999999999999999999998764
No 328
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.21 E-value=0.00023 Score=40.50 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHhcC--CCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLD--GREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~--~~~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|++.|+ +..+.|++|+|.++......
T Consensus 69 f~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 69 METREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp CSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSS
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEECcccccc
Confidence 789999999999886 46699999999998766544
No 329
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.18 E-value=8.4e-05 Score=39.47 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCe-EEEE
Q 033218 1 MSTVEDCNAVIENLDGREYLGR-ILRV 26 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~-~i~v 26 (125)
|.+.++|.+|+..|||..+.|+ +|+|
T Consensus 54 f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 54 YASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp ESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred ECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 6899999999999999999999 8876
No 330
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.13 E-value=0.00076 Score=39.18 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=53.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEeec------------CCCC-CceeEEEEEeecHHHHHHHHHHhCCC
Q 033218 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVG-ARVLYD------------GESG-RSRGYGFVCYSTKAEMETALESLNGV 108 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~------------~~~~-~~~~~~fv~f~~~~~a~~~~~~l~~~ 108 (125)
...|.|-+.|.+... .+-+.|++||.|.+ +..... .... ....|..|.|.+..+|.+|+. -+|.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 456778899887664 56778999998865 211100 0000 124678999999999999998 4999
Q ss_pred eeCCeEEEEEecC
Q 033218 109 ELEGRAMRVSLAQ 121 (125)
Q Consensus 109 ~~~g~~i~v~~~~ 121 (125)
.+.|..|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988886653
No 331
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.12 E-value=0.00027 Score=39.31 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+.. |+..|.|+.|.|.++.++...
T Consensus 65 f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 65 FKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp ESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSCC
T ss_pred ECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCCC
Confidence 6789999999998 999999999999998876544
No 332
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.12 E-value=0.00025 Score=42.81 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+||..|||..|.|+.|.|.|+.....
T Consensus 121 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 121 YETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 6789999999999999999999999999865543
No 333
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=6.1e-05 Score=40.31 Aligned_cols=30 Identities=3% Similarity=0.088 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|.+.++|.+|+..|||..+.|+.+++.+++
T Consensus 54 f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 54 FDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp ESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred ECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 689999999999999999999999888754
No 334
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.99 E-value=0.00049 Score=39.27 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 31 (125)
|.+.++|++|++ +|+..|.|+.|+|.++..
T Consensus 68 F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 68 LESEDDVKLALK-KDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp BSSHHHHHHHGG-GTTEEETTEEEEEEEECH
T ss_pred ECCHHHHHHHHh-cCCCeECCeEEEEEECCH
Confidence 789999999999 999999999999998743
No 335
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.98 E-value=0.0007 Score=38.40 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeE-----EEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRI-----LRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~-----i~v~~~~~~ 32 (125)
|.+.++|.+||+.|||..|.|+. ++|....+.
T Consensus 58 f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 58 FVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp ESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred ECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 68999999999999999999988 677665543
No 336
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.96 E-value=0.00074 Score=37.52 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|++|++ +|+..|.++.|+|.++.....
T Consensus 62 F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~~ 94 (102)
T 1wez_A 62 FATHEDAVAAMA-KDKANMQHRYVELFLNSTAGT 94 (102)
T ss_dssp CSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCCC
T ss_pred ECCHHHHHHHHH-hCCCeECCcEEEEEECCCCCC
Confidence 789999999995 899999999999998776543
No 337
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=96.93 E-value=0.00056 Score=40.17 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 31 (125)
|.+.++|++|++ +|+..|.|+.|+|.++..
T Consensus 95 F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 95 LGSEDDVKMALK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp CSSHHHHHHHHT-TTEEESSSSEEEEEECCH
T ss_pred ECCHHHHHHHHh-cCCCEECCEEEEEEECCh
Confidence 789999999999 999999999999998653
No 338
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.91 E-value=0.0011 Score=37.43 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|.+.++|++|+ .+|+..|.|+.|.|..+.
T Consensus 63 F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 63 FLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp CSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred ECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 78999999999 599999999999998764
No 339
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.91 E-value=0.00046 Score=42.29 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|++.+||..+.|+.|+|.++....
T Consensus 136 F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 136 FERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp ESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred eCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 688999999999999999999999999987543
No 340
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.89 E-value=0.0021 Score=35.41 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCC--ceeEEEEEeecHHHHHHHHHHhCCCeeC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR--SRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~~~~fv~f~~~~~a~~~~~~l~~~~~~ 111 (125)
.+-+|.|..||+.+|++++.+.++..-.+....+.....+.+ ...-|+|.|.+.++.....+.++|..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 345799999999999999988887765544333332222221 2334799999999999999999998763
No 341
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.87 E-value=0.00035 Score=40.13 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+||. +||..|.|+.|.|.++..
T Consensus 74 F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 74 FRNEADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp BSSSHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred ECCHHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 788999999999 999999999999998764
No 342
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.86 E-value=0.00034 Score=39.53 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|+ .|||..|.|+.|+|.++.+.
T Consensus 74 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 74 FCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp ESCGGGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred eCcHHHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 67899999999 89999999999999987644
No 343
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.84 E-value=0.0005 Score=35.83 Aligned_cols=28 Identities=7% Similarity=0.127 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEecc
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~ 29 (125)
|.+.++|.+|++.++ ..+.|++|+|.++
T Consensus 49 f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 49 FMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 788999999999999 9999999999875
No 344
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=96.82 E-value=0.00072 Score=39.23 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHhcCCC----ccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGR----EYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~----~~~~~~i~v~~~~~~~~~ 35 (125)
|.+. +|.+|+..|||. .+.|+.|+|.++.+....
T Consensus 74 f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 74 LSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp CCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred ECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 6788 999999999999 999999999998766443
No 345
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.78 E-value=0.0011 Score=37.52 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|+.. |+..|.|+.|.|.++...
T Consensus 64 F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 64 FKNEDDARKSERL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp CSSHHHHHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred ECCHHHHHHHHHh-CCCccCCeEEEEEECCHH
Confidence 7899999999996 999999999999987543
No 346
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.72 E-value=0.0014 Score=36.45 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+.. |+..+.|+.|+|.++...+
T Consensus 64 F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 64 FASQEIAEKALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp ESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred ECCHHHHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence 6899999999997 9999999999999886554
No 347
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=96.64 E-value=0.00064 Score=38.02 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+|+. +|+..+.|+.|+|.++.+
T Consensus 62 F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 62 MESEQDVQKALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp BSSHHHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred ECCHHHHHHHHH-hCcceeCCeEEEEEECCH
Confidence 789999999999 999999999999988754
No 348
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.62 E-value=0.0016 Score=45.68 Aligned_cols=54 Identities=7% Similarity=0.129 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHH
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~ 103 (125)
+.|+|. .|...++.+|.+.|++||.|..+.+..+. .-|++|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 689997 69999999999999999999998776542 3699999999888886653
No 349
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.54 E-value=0.0048 Score=33.96 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+. ++..+.|+.|.|.++.++...
T Consensus 64 f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 64 FTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp ESSHHHHHHHHH--SCEEETTEEEEEECCCTTCCC
T ss_pred ECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCcC
Confidence 689999999999 478999999999998776543
No 350
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.54 E-value=0.00076 Score=43.03 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+||+.||+..|.|+.|+|.++..
T Consensus 119 f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 119 VGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp ESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred ECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 6789999999999999999999999998753
No 351
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.50 E-value=0.0025 Score=44.43 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+||..|||..|.|+.|.|.++.+..
T Consensus 151 F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 151 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred eccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 789999999999999999999999999987654
No 352
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.44 E-value=0.0032 Score=35.11 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.++++|.+|-..|++..++|+.+++.++.+..
T Consensus 53 F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 53 FSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp CSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred eCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 788999999999999999999999999987443
No 353
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.43 E-value=0.00096 Score=37.18 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|.+.++|.+|+. ++|..+.|+.|.|.++.
T Consensus 59 F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 59 FDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp ESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred ECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 689999999999 99999999999998753
No 354
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=96.41 E-value=0.00089 Score=39.46 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|++|+ .+|+..|.++.|+|.++...+.
T Consensus 93 F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 93 FATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred eCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 78899999999 6999999999999998776543
No 355
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.39 E-value=0.0017 Score=41.71 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHhcCCCcc------------CCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREY------------LGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~------------~~~~i~v~~~~~~~ 33 (125)
|.+.++|..|+++|+|..+ .|+.|.|.|+....
T Consensus 186 F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 186 FKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp ESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 6789999999999999999 89999999987553
No 356
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.36 E-value=0.0043 Score=34.39 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|..|+..+++ +.+++|+|.|+..+..
T Consensus 61 F~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 61 FATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp ESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred ECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 6899999999997554 6799999999876643
No 357
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=96.35 E-value=0.0013 Score=34.04 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEecc
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~ 29 (125)
|.+.++|.+|+. +++..+.|++|.|.++
T Consensus 48 f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 48 FKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred ECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 788999999999 5899999999998764
No 358
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.75 E-value=0.0039 Score=36.82 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=36.3
Q ss_pred CCCceeEEEEEeecHHHHHHHHHHh-CCCeeCCeEEEEEecCC
Q 033218 81 SGRSRGYGFVCYSTKAEMETALESL-NGVELEGRAMRVSLAQG 122 (125)
Q Consensus 81 ~~~~~~~~fv~f~~~~~a~~~~~~l-~~~~~~g~~i~v~~~~~ 122 (125)
.+..+|+++++|.+.++|++|+..+ ++..++| .+.+.++.+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4567899999999999999999999 9999999 899988764
No 359
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.71 E-value=0.0051 Score=35.39 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~ 30 (125)
|.+.++|.+|+.. |+..|.++.|.|..+.
T Consensus 75 F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 75 FACEEYAQNALRK-HKDLLGKRYIELFRST 103 (123)
T ss_dssp CSSHHHHHHHHTT-TTEESSSCEECCEEEC
T ss_pred ECCHHHHHHHHHh-CCCeeCCeEEEEEECC
Confidence 7899999999995 9999999999988654
No 360
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.23 E-value=0.03 Score=33.11 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=26.1
Q ss_pred EEEeecCCCCCceeEEEEEeecHHHHHHHHHHhCC
Q 033218 73 ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG 107 (125)
Q Consensus 73 ~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~~ 107 (125)
+.+.++. +..+|++||+|.+.++|++++..+++
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 3455553 35899999999999999999987764
No 361
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.20 E-value=0.072 Score=29.79 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEe
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVN 27 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~ 27 (125)
|.+.++|++|++.++ .+.|+.+.+.
T Consensus 59 f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 59 FQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred ECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 789999999999883 2455554444
No 362
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=94.70 E-value=0.0036 Score=34.43 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+. ++..+.|+.|.|.++....
T Consensus 57 f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 57 FYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp ESSCCCHHHHTT--CCCEETTEECEEEEEEECC
T ss_pred ECCHHHHHHHHh--CCCeECCEEEEEEECCcCc
Confidence 678889999999 9999999999998876543
No 363
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.054 Score=30.54 Aligned_cols=27 Identities=15% Similarity=0.416 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEe
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVN 27 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~ 27 (125)
|.+...|.+|.-.++|..|.|++|++.
T Consensus 69 f~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 69 FRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp CSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred EccchhhHHHHhhcCCeeecCeEEEec
Confidence 788999999998999999999999985
No 364
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.13 E-value=0.012 Score=32.96 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHhcCCCccC
Q 033218 1 MSTVEDCNAVIENLDGREYL 20 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~ 20 (125)
|.+.++|.+|+..|||..+.
T Consensus 73 f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 73 MESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp ESCHHHHHHHHHHHBTCCCC
T ss_pred ECCHHHHHHHHHHhCCCEEc
Confidence 67999999999999999994
No 365
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.73 E-value=0.44 Score=33.95 Aligned_cols=56 Identities=23% Similarity=0.314 Sum_probs=44.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHhC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 106 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l~ 106 (125)
++..++++ +|..+...+|.++|+.||.+ .+..+- ...+||.+.+.+.|..+++.+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHH
Confidence 45667776 99999999999999999953 343332 2369999999999999999884
No 366
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.56 E-value=0.12 Score=27.24 Aligned_cols=33 Identities=3% Similarity=0.034 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|++|.. ....+.+++|+|.++.++...
T Consensus 49 f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 49 FADDQIAQSLCG--EDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CSCHHHHHHTTT--CEEEETTEEEEEECCCCCCCC
T ss_pred ECCHHHHHHHhc--CCceeCCEEEEEEecCCCCCC
Confidence 678889876433 134558999999998776543
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=92.54 E-value=0.079 Score=35.87 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHhcCCCccC---Ce--EEEEeccCCCCCCC-CCCCCCCcEEEEcCCCCCCCHHHHHHHHhcC
Q 033218 1 MSTVEDCNAVIENLDGREYL---GR--ILRVNFSDKPKPKL-PLYAETDFKLFVGNLSWSVTTESLTQAFQEY 67 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~---~~--~i~v~~~~~~~~~~-~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~ 67 (125)
|++.++|++|+++|||..+. |+ .+.+.|...-.-.. .....+....|+ |.-++.++=..++...
T Consensus 63 f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~~~~~~~~~~lp~Gl~~~---p~fis~~Ee~~Ll~~i 132 (345)
T 3tht_A 63 YRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWKELRPQALPPGLMVV---EEIISSEEEKMLLESV 132 (345)
T ss_dssp ESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSSEEEEEEECCSCCTTEEEE---TTCSCHHHHHHHHTTC
T ss_pred ECCHHHHHHHHHHhCCCccccccCCceEEEEEEeecccccccccccCCCceEEE---cCcCCHHHHHHHHHhc
Confidence 68999999999999998883 44 57778764221100 011112234444 5556766655666543
No 368
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=91.69 E-value=0.083 Score=30.82 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=21.3
Q ss_pred HHHHHH--hcCCCccCCeEEEEeccC
Q 033218 7 CNAVIE--NLDGREYLGRILRVNFSD 30 (125)
Q Consensus 7 a~~a~~--~~~~~~~~~~~i~v~~~~ 30 (125)
|.+|+. .+||..|.|++|+|.+-.
T Consensus 69 A~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 69 AFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred HHHHHHHhhhcCCeecCcEEEEEECc
Confidence 888999 789999999999999643
No 369
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=86.70 E-value=0.55 Score=24.87 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHhcCCCc--cCCeEEEEeccCCCCC
Q 033218 1 MSTVEDCNAVIENLDGRE--YLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~--~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|++ +++.. +.|+.|.|.++.++..
T Consensus 55 F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 55 FADDKVAQS----LCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp ESCHHHHHH----HTTCEEEETTEEEEEEECC----
T ss_pred ECCHHHHHH----HcCCCcccCCEEEEEEEcCCCCc
Confidence 678888873 55655 4599999999876543
No 370
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=85.89 E-value=0.67 Score=26.89 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEec
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNF 28 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~ 28 (125)
|.+..+|++|+. .||..|.|..|=|.+
T Consensus 69 Yds~~~A~rAL~-~NG~ii~G~mIGV~P 95 (132)
T 3p3d_A 69 YDNPASAVDALL-ENGAVFNGVLLGVIP 95 (132)
T ss_dssp BSSHHHHHHHHT-TTTCEETTEECEEEE
T ss_pred cCCHHHHHHHHH-hCCeEeCcEEEEEEE
Confidence 678999999999 899999887666653
No 371
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.09 E-value=0.87 Score=25.28 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHhcCCCccCCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCCCCC
Q 033218 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVT 56 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~ 56 (125)
|.+.+.|++.++ .....+.+..|.|...-+. ....+.+.+||+.++
T Consensus 54 F~d~~va~rVL~-k~~H~L~~~~LsV~P~~~~---------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 54 FREPADAERVLA-QADHELHGAQLSLRPAPPR---------APARLLLQGLPPGTS 99 (104)
T ss_dssp ESSHHHHHHHHT-CSCCBSSSSBCEEEECCCC---------CCCCCCCCSCCCCCC
T ss_pred EcChHHHHHHhc-CCcceecCeEEEEEcCCCC---------CcceEeeecCCCCCC
Confidence 678889999888 4478888998888754333 234577888887664
No 372
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.08 E-value=2.1 Score=23.33 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=15.7
Q ss_pred cCCCccCCeEEEEeccC
Q 033218 14 LDGREYLGRILRVNFSD 30 (125)
Q Consensus 14 ~~~~~~~~~~i~v~~~~ 30 (125)
|||..+.|+.|+|++.+
T Consensus 77 ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 77 VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp GGGSEETTEEEEEECCC
T ss_pred cCCeeeCCeEEEEeccC
Confidence 99999999999999765
No 373
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=77.29 E-value=1.5 Score=25.03 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHhcCCCccCC-eEEEEec
Q 033218 1 MSTVEDCNAVIENLDGREYLG-RILRVNF 28 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~~~~~-~~i~v~~ 28 (125)
|.+..+|++|+. .||..+.+ -.|=|.+
T Consensus 66 Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 66 YQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp ESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred eCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 678999999999 79999975 5555554
No 374
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=63.88 E-value=22 Score=21.59 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=32.2
Q ss_pred cEEEEcCCCC-C--------CCHHHHHHHH--hcCCCeeEEEEeecCCCCCceeEEEEEeec
Q 033218 44 FKLFVGNLSW-S--------VTTESLTQAF--QEYGNVVGARVLYDGESGRSRGYGFVCYST 94 (125)
Q Consensus 44 ~~l~i~~lp~-~--------~~~~~l~~~f--~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~ 94 (125)
.++.|.|+|. . .+..+|++.| +.|.++. +.-.+.+ .-+.|+++|.|.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecC
Confidence 4566777776 2 3447889866 8887654 4444442 2378899999974
No 375
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=54.69 E-value=23 Score=19.01 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=43.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEeecCCCCCceeEEEEEeecHHHHHHHHHHh
Q 033218 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~~~~~l 105 (125)
...+.+-|-|+|..+-..++--.....|.--.+... .|-+.+.|.+.++...|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 356788899999999988887777777754333321 245899999999999999876
No 376
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=52.26 E-value=6.5 Score=19.91 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=24.7
Q ss_pred EEEEEeecHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 033218 87 YGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 87 ~~fv~f~~~~~a~~~~~~l~~~~~~g~~i~v~~~~ 121 (125)
+.||+.. ...+..++..|++..+.|+.+.++.++
T Consensus 42 ~s~v~v~-~~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 42 ASYVEIL-NGKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp CEEEEEC-TTCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cEEEEEC-HHHHHHHHHHhccccCcCceEEEEECC
Confidence 6788775 456788889999999999999888764
No 377
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=35.75 E-value=51 Score=21.28 Aligned_cols=27 Identities=26% Similarity=0.440 Sum_probs=22.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCee
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVV 71 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~ 71 (125)
.-+.|+|+|..++...+.+++.. +.+.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~ 137 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFA 137 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCC
Confidence 45789999999999999999987 4443
No 378
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=33.96 E-value=91 Score=19.83 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCee
Q 033218 46 LFVGNLSWSVTTESLTQAFQEYGNVV 71 (125)
Q Consensus 46 l~i~~lp~~~~~~~l~~~f~~~g~i~ 71 (125)
..|+|+|..++...|..++...+.+.
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~ 124 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIE 124 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChh
Confidence 37899999999999999998654443
No 379
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=39.02 E-value=9.2 Score=21.15 Aligned_cols=17 Identities=12% Similarity=0.302 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHhcCCC
Q 033218 1 MSTVEDCNAVIENLDGR 17 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~~ 17 (125)
|.|.++|.+|+..|...
T Consensus 71 Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 71 YASKEEAKKAVSTLPAD 87 (106)
Confidence 67788888888865443
No 380
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.05 E-value=39 Score=16.77 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=11.0
Q ss_pred CHHHHHHHHHhcCC
Q 033218 3 TVEDCNAVIENLDG 16 (125)
Q Consensus 3 ~~~~a~~a~~~~~~ 16 (125)
+.++|.+|++.-++
T Consensus 32 s~~qA~kALKat~~ 45 (63)
T 1wgn_A 32 SYECVLRAMKKKGE 45 (63)
T ss_dssp CHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHcCC
Confidence 56789999987665
No 381
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=29.50 E-value=27 Score=22.68 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=21.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCee
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYGNVV 71 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~i~ 71 (125)
....|+|+|..++...|.+++.....+.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~ 142 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVI 142 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCcc
Confidence 3567899999999999999997543343
No 382
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=26.60 E-value=57 Score=15.27 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=11.9
Q ss_pred CCCHHHHHHHHHhcCC
Q 033218 1 MSTVEDCNAVIENLDG 16 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~ 16 (125)
|.+.+.|..|+...+|
T Consensus 23 F~~~~~~~~AL~~t~g 38 (53)
T 2knz_A 23 FINREANLQALIATGG 38 (53)
T ss_dssp CCCHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhCC
Confidence 4567788888887776
No 383
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=26.16 E-value=54 Score=17.32 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=20.8
Q ss_pred ceeEEEEEeecHHHHHHHHHHhCCC
Q 033218 84 SRGYGFVCYSTKAEMETALESLNGV 108 (125)
Q Consensus 84 ~~~~~fv~f~~~~~a~~~~~~l~~~ 108 (125)
.+||-||++...++...+++...|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 6899999999888888888766653
No 384
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=22.63 E-value=75 Score=20.09 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=20.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCC
Q 033218 44 FKLFVGNLSWSVTTESLTQAFQEYG 68 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g 68 (125)
..+.++|+|..++...+..++....
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~ 120 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKD 120 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGG
T ss_pred CcEEEEECchhccHHHHHHHHhcCC
Confidence 3477899999999999999887643
No 385
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.43 E-value=65 Score=16.27 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=9.1
Q ss_pred CCCHHHHHHHHHhc
Q 033218 1 MSTVEDCNAVIENL 14 (125)
Q Consensus 1 f~~~~~a~~a~~~~ 14 (125)
|.+.++|..+...|
T Consensus 11 ~~t~eea~~~F~~L 24 (71)
T 1uzc_A 11 WNTKEEAKQAFKEL 24 (71)
T ss_dssp CCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 56677777766653
No 386
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=21.03 E-value=96 Score=19.66 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=19.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcC
Q 033218 45 KLFVGNLSWSVTTESLTQAFQEY 67 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~ 67 (125)
.+.|+|+|+.++...+.+++...
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTG
T ss_pred eEEEECCCCCccHHHHHHHHhcC
Confidence 57789999999998888888753
No 387
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=20.73 E-value=51 Score=16.12 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHH
Q 033218 1 MSTVEDCNAVIE 12 (125)
Q Consensus 1 f~~~~~a~~a~~ 12 (125)
|.|.|+|..|..
T Consensus 33 f~T~eeAA~AyD 44 (63)
T 1gcc_A 33 FETAEDAALAYD 44 (63)
T ss_dssp ESSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 678888888776
No 388
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=20.70 E-value=79 Score=14.68 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHHhcCC
Q 033218 1 MSTVEDCNAVIENLDG 16 (125)
Q Consensus 1 f~~~~~a~~a~~~~~~ 16 (125)
|.+.+.|..|+...+|
T Consensus 24 F~~~~~~~~AL~~t~g 39 (52)
T 2jy5_A 24 FLNREANLQALIATGG 39 (52)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCC
Confidence 4567778888887666
No 389
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=20.70 E-value=1.1e+02 Score=16.26 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcC
Q 033218 42 TDFKLFVGNLSWSVTTESLTQAFQEY 67 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~ 67 (125)
....+++.+.|..++.++..+++..|
T Consensus 18 tPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 18 TPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp CCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred CCeEEEeecCCccCCHHHHHHHHHHH
Confidence 44678899999999999999999887
No 390
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=20.66 E-value=68 Score=13.88 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHhcC
Q 033218 53 WSVTTESLTQAFQEY 67 (125)
Q Consensus 53 ~~~~~~~l~~~f~~~ 67 (125)
..++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 356889999999875
Done!