BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033221
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|C Chain C, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|D Chain D, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5R|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
pdb|2P5R|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
Length = 170
Score = 229 bits (585), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 107/125 (85%), Positives = 118/125 (94%)
Query: 1 MTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKI 60
MTNSNY E++QLY+KYKDQGLEILAFPCNQFGEEEPG+NDQI DFVCTRFKSEFPIF+KI
Sbjct: 46 MTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKI 105
Query: 61 DVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 120
DVNGE+ASPLY+ LK GKWGIFGDDIQWNFAKFLV+K+GQVVDRYYPTTS LSLE DIK+
Sbjct: 106 DVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQ 165
Query: 121 LLGLS 125
LL +S
Sbjct: 166 LLEIS 170
>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|3DWV|B Chain B, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
Length = 187
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 2 TNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 61
T Y + LY+KYK QG +LAFP NQFG +EPG+ ++I +FVCT+FK+EFPI KI+
Sbjct: 61 TKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKIN 120
Query: 62 VNGEHASPLYKLLKSGKWGIFGDD-IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 120
VNGE+A PLY+ +K K GI I+WNF FL+D++G V+R+ P S+ +E +
Sbjct: 121 VNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIP 180
Query: 121 LLG 123
LLG
Sbjct: 181 LLG 183
>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant
Peroxidase From Trypanosoma Brucei
Length = 190
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 84/122 (68%), Gaps = 1/122 (0%)
Query: 2 TNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 61
T Y + LY+KYK QG +LAFPCNQFG +EPG+ ++I +FVCT+FK+EFPI KI+
Sbjct: 63 TKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKIN 122
Query: 62 VNGEHASPLYKLLKSGKWGIFGDD-IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 120
VNGE+A PLY+ +K K GI I+WNF FL+D++G V+R+ P S+ +E +
Sbjct: 123 VNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIP 182
Query: 121 LL 122
LL
Sbjct: 183 LL 184
>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|2RM6|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Reduced Form
Length = 167
Score = 131 bits (330), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 2 TNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 61
T Y + LY+KYK QG +LAFP NQFG +EPG+ ++I +FVCT+FK+EFPI KI+
Sbjct: 41 TKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKIN 100
Query: 62 VNGEHASPLYKLLKSGKWGIFGDD-IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 120
VNGE+A PLY+ +K K GI I+WNF FL+D++G V+R+ P S+ +E +
Sbjct: 101 VNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIP 160
Query: 121 LLG 123
LLG
Sbjct: 161 LLG 163
>pdb|3E0U|A Chain A, Crystal Structure Of T. Cruzi Gpx1
Length = 166
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 2 TNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 61
T Y + LY+KYK QG +LAFPCNQF +EPG+ ++ +F CTRFK++FPI KID
Sbjct: 40 TKGGYETATTLYNKYKGQGFTVLAFPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKID 99
Query: 62 VNGEHASPLYKLLKSGKWGIFGDD-IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 120
VNG A PLY+ +K+ G+FG I+WNF FL+D++G V+R+ P S+ +E +
Sbjct: 100 VNGSKAHPLYEFMKATIPGLFGTKAIKWNFTSFLIDRHGVPVERFSPGASVEDIEKKLLP 159
Query: 121 LLG 123
LLG
Sbjct: 160 LLG 162
>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid
Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae
Length = 171
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 79/119 (66%), Gaps = 1/119 (0%)
Query: 5 NYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG 64
Y EL LY +YKD+G I+ FPCNQFG +EPGS+++IA F + FPI +KIDVNG
Sbjct: 49 QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNG 108
Query: 65 EHASPLYKLLKSGKWGIFG-DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 122
+ P+YK LKS K G+ G I+WNF KFLVDK G+V +RY T SL I++LL
Sbjct: 109 GNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL 167
>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case
Of Schistosoma Mansoni Phospholipid Glutathione
Peroxidase
Length = 169
Score = 122 bits (305), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 81/121 (66%)
Query: 2 TNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 61
T+ NY +L +++ + +GL ILAFPCNQFG +EP + +I FV ++ +F +F KI
Sbjct: 46 TDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIK 105
Query: 62 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL 121
VNG A LYK LKS + G ++I+WNF+KFLVD+ GQ V RY PTT+ +E DI +L
Sbjct: 106 VNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMEL 165
Query: 122 L 122
L
Sbjct: 166 L 166
>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione
Peroxidase
Length = 169
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 81/121 (66%)
Query: 2 TNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 61
T+ NY +L +++ + +GL ILAFPCNQFG +EP + +I FV ++ +F +F KI
Sbjct: 46 TDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIK 105
Query: 62 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL 121
VNG A LYK LKS + G ++I+WNF+KFLVD+ GQ V RY PTT+ +E DI +L
Sbjct: 106 VNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMEL 165
Query: 122 L 122
L
Sbjct: 166 L 166
>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Phospholipid Hydroperoxide Glutathione
Peroxidase (Gpx4)
Length = 183
Score = 119 bits (297), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 81/120 (67%), Gaps = 5/120 (4%)
Query: 2 TNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 61
T NY +L L+ +Y + GL ILAFPCNQFG++EPGSN++I +F + +F +F KI
Sbjct: 62 TEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKIC 120
Query: 62 VNGEHASPLYKLLK---SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 118
VNG+ A PL+K +K GK GI G+ I+WNF KFL+DKNG VV RY P L +E D+
Sbjct: 121 VNGDDAHPLWKWMKIQPKGK-GILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 179
>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 4(Gpx4)
Length = 185
Score = 118 bits (296), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 81/120 (67%), Gaps = 5/120 (4%)
Query: 2 TNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 61
T NY +L L+ +Y + GL ILAFPCNQFG++EPGSN++I +F + +F +F KI
Sbjct: 64 TEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKIC 122
Query: 62 VNGEHASPLYKLLK---SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 118
VNG+ A PL+K +K GK GI G+ I+WNF KFL+DKNG VV RY P L +E D+
Sbjct: 123 VNGDDAHPLWKWMKIQPKGK-GILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 181
>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7
pdb|2P31|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 7
Length = 181
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 2 TNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID 61
T+ +Y L QL +LAFPCNQFG++EP SN +I F + FP+F KI
Sbjct: 64 TDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIA 123
Query: 62 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL 121
V G A P +K L G + WNF K+LV +G+VV + PT S+ + I L
Sbjct: 124 VTGTGAHPAFKYLAQTS----GKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITAL 179
Query: 122 L 122
+
Sbjct: 180 V 180
>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|B Chain B, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|C Chain C, Crystal Structure Of The Human Pdi-Peroxidase
Length = 180
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 1 MTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKI 60
+T+ NY+ L +L+ ++ +LAFPCNQFGE EP + ++ F + FPIF KI
Sbjct: 52 LTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKI 111
Query: 61 DVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 120
+ G P ++ L + +WNF K+LV+ GQVV + P + + DI
Sbjct: 112 KILGSEGEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAA 167
Query: 121 LL 122
L+
Sbjct: 168 LV 169
>pdb|3CYN|A Chain A, The Structure Of Human Gpx8
pdb|3CYN|B Chain B, The Structure Of Human Gpx8
pdb|3CYN|C Chain C, The Structure Of Human Gpx8
Length = 189
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 1 MTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKI 60
+T+ NY+ L +L+ ++ +LAFPCNQFGE EP + ++ F + FPIF KI
Sbjct: 61 LTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKI 120
Query: 61 DVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 120
+ G P ++ L + +WNF K+LV+ GQVV + P + + DI
Sbjct: 121 KILGSEGEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAA 176
Query: 121 LL 122
L+
Sbjct: 177 LV 178
>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
pdb|1GP1|B Chain B, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
Length = 198
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 28/147 (19%)
Query: 2 TNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTR-------FKSEF 54
T +Y +++ L + +GL +L FPCNQFG +E N++I + C + F+ F
Sbjct: 48 TVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQENAKNEEILN--CLKYVRPGGGFEPNF 105
Query: 55 PIFEKIDVNGEHASPLYKLLKSG------------------KWG-IFGDDIQWNFAKFLV 95
+FEK +VNGE A PL+ L+ W + +D+ WNF KFLV
Sbjct: 106 MLFEKCEVNGEKAHPLFAFLREVLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLV 165
Query: 96 DKNGQVVDRYYPTTSLLSLEHDIKKLL 122
+G V RY + +E DI+ LL
Sbjct: 166 GPDGVPVRRYSRRFLTIDIEPDIETLL 192
>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
pdb|2F8A|B Chain B, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
Length = 208
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 24/145 (16%)
Query: 2 TNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV-----CTRFKSEFPI 56
T +Y ++++L + +GL +L FPCNQFG +E N++I + + F+ F +
Sbjct: 62 TVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFML 121
Query: 57 FEKIDVNGEHASPLYKLLKSG------------------KWG-IFGDDIQWNFAKFLVDK 97
FEK +VNG A PL+ L+ W + +D+ WNF KFLV
Sbjct: 122 FEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGP 181
Query: 98 NGQVVDRYYPTTSLLSLEHDIKKLL 122
+G + RY + +E DI+ LL
Sbjct: 182 DGVPLRRYSRRFQTIDIEPDIEALL 206
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 69/136 (50%), Gaps = 20/136 (14%)
Query: 3 NSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV-----CTRFKSEFPIF 57
YIEL+ L ++ GL IL FPCNQFG++EPG N +I + F F +F
Sbjct: 53 TGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLF 112
Query: 58 EKIDVNGEHASPLYKLLKSG---KWGIFG------------DDIQWNFAKFLVDKNGQVV 102
EK DVNGE Y LK+ + G DI+WNF KFLV +G +
Sbjct: 113 EKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPI 172
Query: 103 DRYYPTTSLLSLEHDI 118
R++ T++ +++ DI
Sbjct: 173 MRWHHRTTVSNVKMDI 188
>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5
Length = 215
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 20/136 (14%)
Query: 3 NSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV-----CTRFKSEFPIF 57
+ Y EL+ L ++ K GL +L FPCNQFG++EPG N +I + F F +F
Sbjct: 71 TAQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLF 130
Query: 58 EKIDVNGE--------------HASPLYKLLKSGKW-GIFGDDIQWNFAKFLVDKNGQVV 102
EK DVNGE H S + KS W + DI+WNF KFLV +G V
Sbjct: 131 EKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPV 190
Query: 103 DRYYPTTSLLSLEHDI 118
R+ ++ S++ DI
Sbjct: 191 MRWSHRATVSSVKTDI 206
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 2 TNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV-----CTRFKSEFPI 56
T ++ +L++L ++ + L +L FPCNQFG +E N++I + + ++ F +
Sbjct: 63 TTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTL 121
Query: 57 FEKIDVNGEHASPLYKLLKSGK------------------WG-IFGDDIQWNFAKFLVDK 97
+K +VNG++ P++ LK W + D+ WNF KFL+
Sbjct: 122 VQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGP 181
Query: 98 NGQVVDRYYPTTSLLSLEHDIKKLL 122
G+ RY T +++E DIK+LL
Sbjct: 182 EGEPFRRYSRTFPTINIEPDIKRLL 206
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 34/126 (26%)
Query: 1 MTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE--PGSNDQIADFVCTRFKSEFPIFE 58
M+ ++ + L +LY+KY QG EI + G+E S D + +VC R
Sbjct: 49 MSAAHNLALRELYNKYASQGFEIYQISLD--GDEHFWKTSADNLP-WVCVR--------- 96
Query: 59 KIDVNGEHAS--PLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH 116
D NG ++S LY + + FLV++N ++ R ++ L+
Sbjct: 97 --DANGAYSSYISLYNVTNLP-------------SVFLVNRNNELSAR---GENIKDLDE 138
Query: 117 DIKKLL 122
IKKLL
Sbjct: 139 AIKKLL 144
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 46 VCTRFKSEFPIFEKI---DVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN 98
+C R+ + ++K+ + E YKL + KWG I N AK +V KN
Sbjct: 111 ICERYLTNLLGYDKVLMMNTGAEANETAYKLCR--KWGYEVKKIPENMAKIVVCKN 164
>pdb|2XSJ|A Chain A, Structure Of Desulforubidin From Desulfomicrobium
Norvegicum
pdb|2XSJ|D Chain D, Structure Of Desulforubidin From Desulfomicrobium
Norvegicum
Length = 437
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 64 GEHASPLYKLLKSGKWGIFGDDIQ 87
+HA+PL L+SG W F DI+
Sbjct: 2 AKHATPLLDQLQSGPWPSFVADIK 25
>pdb|2KFK|B Chain B, Solution Structure Of Bem1p Pb1 Domain Complexed With
Cdc24p Pb1 Domain
Length = 86
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 62 VNGEHASPLYKLL---KSGKWGIFGDDIQWNFAKFLVDKNGQ 100
++ H SP+ K+ + G + + G D WN AK ++ +N +
Sbjct: 37 ISNTHISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAENNE 78
>pdb|2KFJ|A Chain A, Solution Structure Of The Loop Deletion Mutant Of Pb1
Domain Of Cdc24p
Length = 87
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 62 VNGEHASPLYKLL---KSGKWGIFGDDIQWNFAKFLVDKNGQ 100
++ H SP+ K+ + G + + G D WN AK ++ +N +
Sbjct: 38 ISNTHISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAENNE 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,212,233
Number of Sequences: 62578
Number of extensions: 181581
Number of successful extensions: 383
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 27
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)