BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033222
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB
PE=1 SV=2
Length = 178
Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/114 (91%), Positives = 112/114 (98%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
EI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct: 65 EIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
II+TAT+PAKLCKRESTKQFHNSKIKFPLVF+KVRPP+RKLKTTYKA++PNLFM
Sbjct: 125 IIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178
>sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC
PE=2 SV=1
Length = 178
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/114 (92%), Positives = 110/114 (96%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
EIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCIQ
Sbjct: 65 EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQ 124
Query: 71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
II+TAT+PAKLCKRE TKQFHNSKIKFPLVF+KVRPP+RKLKTTYKAS+PNLFM
Sbjct: 125 IIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178
>sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1
Length = 178
Score = 223 bits (567), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 105/114 (92%), Positives = 110/114 (96%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQ
Sbjct: 65 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQ 124
Query: 71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
II+TATIPAKLCKRES+KQFHNSKIKFPLV +K+RPP+RKLKT YKASRPNLFM
Sbjct: 125 IIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178
>sp|Q943F3|RL18A_ORYSJ 60S ribosomal protein L18a OS=Oryza sativa subsp. japonica
GN=RPL18A PE=2 SV=1
Length = 178
Score = 214 bits (546), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 101/114 (88%), Positives = 108/114 (94%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
EIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQ
Sbjct: 65 EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124
II+TAT+ KLCKR++TKQFH S IKFPLV++KVRPPTRKLKTT+KASRPNLFM
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178
>sp|Q7ZWJ4|RL18A_DANRE 60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1
Length = 176
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 79/112 (70%), Gaps = 3/112 (2%)
Query: 12 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 71
+FEK+P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+ IQI
Sbjct: 67 VFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQI 126
Query: 72 IRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
++ I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F
Sbjct: 127 MKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|Q54MK8|RL18A_DICDI 60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a
PE=3 SV=2
Length = 171
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 77/113 (68%), Gaps = 5/113 (4%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
EIFE P K+KN+G+++RY SR+G HN+YKEYRD T GAV QMY EMASRH R I
Sbjct: 62 EIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIH 121
Query: 71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
II I A L +R +TKQFH+SKIKFPL + K K+T+ A+RPN F
Sbjct: 122 IIDIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2
Length = 176
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQ
Sbjct: 66 QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125
Query: 71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
I++ I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F
Sbjct: 126 IMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1
Length = 176
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQ
Sbjct: 66 QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125
Query: 71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
I++ I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F
Sbjct: 126 IMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1
Length = 176
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQ
Sbjct: 66 QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125
Query: 71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
I++ I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F
Sbjct: 126 IMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1
Length = 176
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQ
Sbjct: 66 QVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 125
Query: 71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
I++ I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F
Sbjct: 126 IMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A
PE=1 SV=1
Length = 177
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 73/101 (72%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
+++E +P KIKN+GIWLRY SR+G HNMY+EYRD T+ GAV Q Y +M +RHR R+ IQ
Sbjct: 66 QVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQ 125
Query: 71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKL 111
II+ +IPA +R KQFH+SKIKFPLV + RKL
Sbjct: 126 IIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166
>sp|P0DJ18|RL18A_TETTH 60S ribosomal protein L18a OS=Tetrahymena thermophila GN=RPL18A
PE=1 SV=1
Length = 189
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 76/113 (67%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
EI+EK+ +K YGI L+YQSRT HNMYKEYRD +LNGAV Q+ +MA HR + IQ
Sbjct: 77 EIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQ 136
Query: 71 IIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
IIRTAT+ K KR +T N+ +KFP+V RP +K +T YKA+RP F
Sbjct: 137 IIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2
SV=1
Length = 177
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 67/89 (75%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
EI EK+P KIKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R+ IQ
Sbjct: 66 EIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 125
Query: 71 IIRTATIPAKLCKRESTKQFHNSKIKFPL 99
II+ I A C+R KQFHNS I+FPL
Sbjct: 126 IIKVEVIKASACRRPQVKQFHNSTIRFPL 154
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2
SV=1
Length = 176
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Query: 12 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 71
+ E++P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+ IQI
Sbjct: 67 VHEQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQI 126
Query: 72 IRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
++ I A C+R + KQFH+SKIKFPL + +R R+ K + RP F
Sbjct: 127 MKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTRRPQTF 175
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=3
SV=2
Length = 180
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 68/89 (76%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
++FEKNP +KNYG+WL+Y SRTG+HNMY+EYRDTT+ GAV Q Y +M +RHR ++ I
Sbjct: 69 QVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIH 128
Query: 71 IIRTATIPAKLCKRESTKQFHNSKIKFPL 99
I++ T+ A+ KR K FH++KI+FPL
Sbjct: 129 ILKVQTVKAEDTKRAGIKMFHDAKIRFPL 157
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1
Length = 176
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 73/112 (65%), Gaps = 3/112 (2%)
Query: 12 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 71
+ EK P K+KN+G+WLR SR+G HNMY+EYRD T + AV Q Y +M +RHR R+ I I
Sbjct: 67 VHEKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHI 126
Query: 72 IRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
++ I A C+R + KQFH+SKIKFPL + +R R+ + RPN F
Sbjct: 127 MKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHNPRFTTKRPNTF 175
>sp|P05732|RL20_SCHPO 60S ribosomal protein L20 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl20a PE=1 SV=3
Length = 176
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
EI E P K K +GIW+RY SR+G HNMYKE+RDTT GAVE MY +MA+RHR R I+
Sbjct: 62 EISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIR 121
Query: 71 IIRTATIPAK-LCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123
I++ + K +R KQ N +KFPL ++ K + RP+ F
Sbjct: 122 ILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTF 175
>sp|P0CX24|RL20B_YEAST 60S ribosomal protein L20-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL20B PE=1 SV=1
Length = 172
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
+I E +PTK+KN+G+W+RY SR+G HNMYKE RD + AVE +Y +MA+RHR R I
Sbjct: 63 QINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIH 122
Query: 71 IIRTATIPAKL-CKRESTKQFHNSKIKFPLVFKKVRPPTRKLKT--TYKASRPNLF 123
I++ A I KR+ KQF +KFPL P R K+ T+ RP+ F
Sbjct: 123 ILKVAEIEKTADVKRQYVKQFLTKDLKFPL-------PHRVQKSTKTFSYKRPSTF 171
>sp|P0CX23|RL20A_YEAST 60S ribosomal protein L20-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL20A PE=1 SV=1
Length = 172
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 70
+I E +PTK+KN+G+W+RY SR+G HNMYKE RD + AVE +Y +MA+RHR R I
Sbjct: 63 QINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIH 122
Query: 71 IIRTATIPAKL-CKRESTKQFHNSKIKFPLVFKKVRPPTRKLKT--TYKASRPNLF 123
I++ A I KR+ KQF +KFPL P R K+ T+ RP+ F
Sbjct: 123 ILKVAEIEKTADVKRQYVKQFLTKDLKFPL-------PHRVQKSTKTFSYKRPSTF 171
>sp|A6UT94|RLX_META3 50S ribosomal protein LX OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rplX PE=3 SV=1
Length = 73
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 40 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPA 79
KEY+ A+E++Y+E+ S+H V+ I+II + I A
Sbjct: 22 KEYKAMKEEDAIEKIYSEIGSKHNVKRASIKIIEVSEISA 61
>sp|A6VI47|RLX_METM7 50S ribosomal protein LX OS=Methanococcus maripaludis (strain C7
/ ATCC BAA-1331) GN=rplX PE=3 SV=1
Length = 76
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 40 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI 77
KEY + A+E MY+EM S+H V+ I+I+ + I
Sbjct: 22 KEYNVVKEDDALETMYSEMGSKHAVKRAYIKIVEVSEI 59
>sp|A4G0D0|RLX_METM5 50S ribosomal protein LX OS=Methanococcus maripaludis (strain C5
/ ATCC BAA-1333) GN=rplX PE=3 SV=1
Length = 76
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 40 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI 77
KEY + A+E MY+EM S+H V+ I+++ + I
Sbjct: 22 KEYNVVKEDDALETMYSEMGSKHAVKRANIKVVEISEI 59
>sp|Q6M157|RLX_METMP 50S ribosomal protein LX OS=Methanococcus maripaludis (strain S2
/ LL) GN=rplX PE=3 SV=1
Length = 76
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 40 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAK 80
KEY N A+E MY+E+ S+H V+ I+++ + I +
Sbjct: 22 KEYNVLKENDALETMYSEIGSKHAVKRANIKVVEISEISVE 62
>sp|A9A8N2|RLX_METM6 50S ribosomal protein LX OS=Methanococcus maripaludis (strain C6
/ ATCC BAA-1332) GN=rplX PE=3 SV=1
Length = 76
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 40 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI 77
KEY + A+E MY+EM S+H V+ I ++ + I
Sbjct: 22 KEYNVVKEDDALETMYSEMGSKHSVKRAYINVLEVSEI 59
>sp|A6UR53|RLX_METVS 50S ribosomal protein LX OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rplX PE=3 SV=1
Length = 76
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 40 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI 77
KEY + A+E MY++M S+H V+ IQ++ + I
Sbjct: 22 KEYNVLKESDALEIMYSDMGSKHSVKRANIQVLEISEI 59
>sp|B9LUU5|RLX_HALLT 50S ribosomal protein LX OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rplX PE=3
SV=1
Length = 58
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 20 IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 71
+ Y + ++QSR G+ K+ + A E++YT + S+H + P I+I
Sbjct: 1 MSTYTVTGQFQSRDGFQPFTKDVEAENEDLARERIYTTVGSQHNRKRPQIEI 52
>sp|B4N8G7|CRBN_DROWI Protein cereblon homolog OS=Drosophila willistoni GN=GK12054 PE=3
SV=1
Length = 612
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT----LNGAVEQMYTEMASRHRVRS 66
E F P K + G R++ NMY+ Y+ T+ L+ +E YT++ + R +
Sbjct: 365 EYFLPEPLKCIDMGSMSRFRDIPSMRNMYQRYQITSTPWPLDACLEYSYTDIVEKARKK- 423
Query: 67 PCIQIIRTATIP 78
++I + T+P
Sbjct: 424 --LEIHKIDTMP 433
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,634,074
Number of Sequences: 539616
Number of extensions: 1405780
Number of successful extensions: 3683
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3651
Number of HSP's gapped (non-prelim): 30
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)