Query 033222
Match_columns 124
No_of_seqs 101 out of 270
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 11:17:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0829 60S ribosomal protein 100.0 1.1E-56 2.3E-61 344.4 5.6 111 11-124 59-169 (169)
2 PRK00773 rplX 50S ribosomal pr 100.0 2.8E-35 6E-40 202.2 6.1 73 20-92 2-74 (76)
3 PF01775 Ribosomal_L18ae: Ribo 100.0 4E-34 8.8E-39 212.1 7.5 66 10-75 59-124 (124)
4 COG2157 RPL20A Ribosomal prote 100.0 2.6E-32 5.5E-37 191.5 5.7 84 15-98 2-85 (85)
5 PF05838 Glyco_hydro_108: Glyc 37.5 12 0.00026 25.9 0.2 39 17-58 20-58 (83)
6 smart00684 DM15 Tandem repeat 26.0 9.9 0.00021 23.1 -1.6 16 36-51 4-19 (39)
7 PF01807 zf-CHC2: CHC2 zinc fi 24.9 41 0.00089 23.3 1.2 47 14-60 41-91 (97)
8 KOG0704 ADP-ribosylation facto 23.1 48 0.001 29.3 1.5 55 10-65 23-84 (386)
9 COG3500 Phage protein D [Gener 22.9 44 0.00096 29.2 1.2 40 52-100 122-161 (350)
10 KOG0706 Predicted GTPase-activ 22.0 48 0.001 29.9 1.3 23 15-38 32-56 (454)
11 COG5242 TFB4 RNA polymerase II 22.0 76 0.0017 26.9 2.4 29 37-66 99-127 (296)
12 cd03749 proteasome_alpha_type_ 21.5 1.3E+02 0.0029 23.1 3.5 35 38-72 170-208 (211)
13 PF06353 DUF1062: Protein of u 21.1 65 0.0014 24.5 1.7 21 21-41 6-28 (142)
14 PHA03066 Hypothetical protein; 21.0 60 0.0013 24.1 1.4 21 16-36 60-80 (110)
15 PRK09744 DNA-binding transcrip 20.1 6.8 0.00015 27.3 -3.5 20 27-51 50-69 (75)
No 1
>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-56 Score=344.36 Aligned_cols=111 Identities=61% Similarity=1.003 Sum_probs=107.4
Q ss_pred EeccCCCceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCcccccc
Q 033222 11 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQF 90 (124)
Q Consensus 11 eI~Ek~p~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikqf 90 (124)
||+|++|+.||||||||+||||||||||||||||+|.+|||+|||+|||||||||+++||||+|+||++++|+|+.++||
T Consensus 59 qi~E~~p~~vkNfGIwlrYdSRsG~HNmYkEyRd~t~~gAV~q~y~dMaaRhRar~~~I~Iikv~~v~a~~~kR~~vkqF 138 (169)
T KOG0829|consen 59 QIFEKSPLKVKNFGIWLRYDSRSGTHNMYKEYRDTTRVGAVEQCYRDMAARHRARFRSIQIIKVAEVPAEDCKRAYVKQF 138 (169)
T ss_pred eecCCCCceeeeeEEEEEEccCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhhhcccceeEEEEeeeeHHHhchHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccceecccCCCCcccCCCeeecCCcCCC
Q 033222 91 HNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124 (124)
Q Consensus 91 ~~~~ikFPl~~r~~~~~~~~~~~~F~~~rP~t~~ 124 (124)
||++|+|||||++++. +.+.+|++.|||||+
T Consensus 139 hd~kikFPL~~rv~~~---k~~~~fs~~rP~tf~ 169 (169)
T KOG0829|consen 139 HDSKIKFPLPHRVVNR---KSKKTFSTKRPSTFF 169 (169)
T ss_pred hccCcccccccccccc---ccccccccCCCcccC
Confidence 9999999999999874 347889999999996
No 2
>PRK00773 rplX 50S ribosomal protein LX; Validated
Probab=100.00 E-value=2.8e-35 Score=202.19 Aligned_cols=73 Identities=19% Similarity=0.348 Sum_probs=71.8
Q ss_pred eeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCcccccccc
Q 033222 20 IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHN 92 (124)
Q Consensus 20 vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikqf~~ 92 (124)
+||||||++|+|++|+|||||||||++++|||||||+||||||++++++|+|++|+||+++||+|++|+||+.
T Consensus 2 ~k~f~V~g~~~~~~~~~~f~Ke~ra~~~~~Ave~~Ys~~gSrH~~kr~~I~I~~V~ei~~~e~~~~~vkq~~~ 74 (76)
T PRK00773 2 MKIYRVKGTFLAGDEWQKFTKEVRALNEKDALEKVYSLFGSKHKVKRTQIKIEEVSEISPEEAEDPRVRELAK 74 (76)
T ss_pred ceEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCcccEEEEEEEEeCHHHcCCHHHHHHhh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>PF01775 Ribosomal_L18ae: Ribosomal L18ae/LX protein domain; InterPro: IPR023573 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the eukaryotic 60S ribosomal protein L18ae [] and the archaea 50S ribosomal protein LX. Rat ribosomal protein L18 is homologous to Xenopus laevis L14 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A1D_X 4A1B_X 4A18_X 4A19_X 2JXT_A 3IZR_S 3IZS_S.
Probab=100.00 E-value=4e-34 Score=212.12 Aligned_cols=66 Identities=67% Similarity=1.138 Sum_probs=60.5
Q ss_pred eEeccCCCceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEee
Q 033222 10 MEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTA 75 (124)
Q Consensus 10 ~eI~Ek~p~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~ 75 (124)
-+|+|++|+.|||||||++||||+|+|||||||||+|++|||||||+||||||++|+++|||++|+
T Consensus 59 ~~i~ek~p~~VKnfgI~lry~sr~g~~nfyKEyra~s~~~Aveq~YsdmGSrHrvkr~~I~I~~Ve 124 (124)
T PF01775_consen 59 KEIFEKNPTKVKNFGIWLRYDSRSGTHNFYKEYRALSENGAVEQVYSDMGSRHRVKRSSIQIIKVE 124 (124)
T ss_dssp EEE-SSSTTS-EEEEEEEEEEESSCEEEEEEEEEESCHHHHHHHHHHHHHHTTT--GGGEEEEEEE
T ss_pred EcccCCCCcceeEEEEEEEEecCCccEEEEEEeccCCHHHHHHHHHHHhhhhhCCCccceEEEEeC
Confidence 479999999999999999999999999999999999999999999999999999999999999986
No 4
>COG2157 RPL20A Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.6e-32 Score=191.48 Aligned_cols=84 Identities=31% Similarity=0.597 Sum_probs=81.7
Q ss_pred CCCceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCccccccccCC
Q 033222 15 KNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSK 94 (124)
Q Consensus 15 k~p~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikqf~~~~ 94 (124)
..|..++|+|||++|+|++|+||||||+||+++++|+|.+||||||||+++|++|+|++|+||+++|+.|+.|++|++.+
T Consensus 2 ~~~K~f~V~G~~~~~~~~~~~~kf~Kevra~~e~~AiE~vYS~~gsrhkvkR~~I~I~~V~Ei~pedv~d~~vk~L~~~~ 81 (85)
T COG2157 2 PMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEEVEEIEPEDVEDPVVKRLLTED 81 (85)
T ss_pred CcceEEEEeeEEEEecCCCcceehhHHhhhcCHHHHHHHHHHHhhhhccccccceeEEEEEecChhhcccHHHHHHhccc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc
Q 033222 95 IKFP 98 (124)
Q Consensus 95 ikFP 98 (124)
++||
T Consensus 82 ~~~~ 85 (85)
T COG2157 82 LKFP 85 (85)
T ss_pred ccCC
Confidence 9998
No 5
>PF05838 Glyco_hydro_108: Glycosyl hydrolase 108; InterPro: IPR008565 This family consists of several hypothetical bacterial sequences as well as one viral sequence Q9MC03 from SWISSPROT, the function of this family is unknown.; PDB: 2NR7_A 2IKB_B 2IS5_A.
Probab=37.54 E-value=12 Score=25.85 Aligned_cols=39 Identities=28% Similarity=0.247 Sum_probs=24.1
Q ss_pred CceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHH
Q 033222 17 PTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEM 58 (124)
Q Consensus 17 p~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~Ysem 58 (124)
|+-.-||||..+.-..-+- ....|+||.++|.+-.+++.
T Consensus 20 ~GG~T~~GIt~~~~~~~~~---~~d~~~Lt~~~A~~iY~~~y 58 (83)
T PF05838_consen 20 PGGETNYGITQRTARAWGG---AGDMRDLTRDQAKAIYRRDY 58 (83)
T ss_dssp GCG-EECTEEHHHCCCTT-----S-CCCS-HHHHHHCHHHHT
T ss_pred CCCccccchhHHHHHhcCC---cCchhhcCHHHHHHHHHHHh
Confidence 4556799998775443333 66778999999986655554
No 6
>smart00684 DM15 Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function.
Probab=25.96 E-value=9.9 Score=23.12 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=13.3
Q ss_pred ccceeeeccCChhHHH
Q 033222 36 HNMYKEYRDTTLNGAV 51 (124)
Q Consensus 36 hNmyKEyRdls~~gAV 51 (124)
.+||.|||.+..++|-
T Consensus 4 ~~~Y~eFr~laled~~ 19 (39)
T smart00684 4 QNMYEEFRQLCLEDRK 19 (39)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4699999999888875
No 7
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=24.87 E-value=41 Score=23.28 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=29.7
Q ss_pred cCCCceeeEe--eeEEEeecCC-Ccc-cceeeeccCChhHHHHHHHHHHhh
Q 033222 14 EKNPTKIKNY--GIWLRYQSRT-GYH-NMYKEYRDTTLNGAVEQMYTEMAS 60 (124)
Q Consensus 14 Ek~p~~vkny--GI~lrY~Sr~-gth-NmyKEyRdls~~gAVeq~Ysemgs 60 (124)
|++|...=|. |+|-++.... |-. .++.++..++-.+||+.+-+++|-
T Consensus 41 d~~pS~~i~~~k~~~~Cf~Cg~~Gd~i~~v~~~~~~~f~eAv~~l~~~~~i 91 (97)
T PF01807_consen 41 DKTPSFSINPDKNRFKCFGCGKGGDVIDFVMKYEGCSFKEAVKWLAEEFGI 91 (97)
T ss_dssp -SS--EEEETTTTEEEETTT--EE-HHHHHHHHHT--HHHHHHHHHHHHT-
T ss_pred CCCCceEEECCCCeEEECCCCCCCcHHhHHHHHhCCCHHHHHHHHHHHhCC
Confidence 5666555554 7888885322 222 889999999999999999988874
No 8
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=23.14 E-value=48 Score=29.30 Aligned_cols=55 Identities=25% Similarity=0.405 Sum_probs=31.1
Q ss_pred eEeccCCCcee-eEeeeEEEeecCCCccc-c---eeeeccCChhH--HHHHHHHHHhhccccc
Q 033222 10 MEIFEKNPTKI-KNYGIWLRYQSRTGYHN-M---YKEYRDTTLNG--AVEQMYTEMASRHRVR 65 (124)
Q Consensus 10 ~eI~Ek~p~~v-knyGI~lrY~Sr~gthN-m---yKEyRdls~~g--AVeq~YsemgsRHrar 65 (124)
+|.-.+||.-| -+||||++-+ |+|.|. | .--+|.+|+.. .++-.=+|-||.-+++
T Consensus 23 feC~a~NPQWvSvsyGIfICLE-CSG~HRgLGVhiSFVRSVTMD~wkeiel~kMeaGGN~~~~ 84 (386)
T KOG0704|consen 23 FECGAPNPQWVSVSYGIFICLE-CSGKHRGLGVHISFVRSVTMDKWKEIELKKMEAGGNERFR 84 (386)
T ss_pred eecCCCCCCeEeecccEEEEEe-cCCcccccceeeEEEEeeecccccHHHHHHHHhccchhHH
Confidence 44555677665 4899999987 466662 1 12355666542 2333335666665544
No 9
>COG3500 Phage protein D [General function prediction only]
Probab=22.87 E-value=44 Score=29.17 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=31.6
Q ss_pred HHHHHHHhhcccccCCCceEEEeeeecCCCCCCccccccccCCCcccce
Q 033222 52 EQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLV 100 (124)
Q Consensus 52 eq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikqf~~~~ikFPl~ 100 (124)
..+-+|||++|.... .|++.++.-|+|-|.-.+++-|.+=
T Consensus 122 sdi~~eIAa~hgLt~---------av~~t~~~~~~idQ~~ESD~~FL~r 161 (350)
T COG3500 122 SDIASEIAAEHGLTA---------AVSATQVAHPHIDQYYESDINFLLR 161 (350)
T ss_pred HHHHHHHHHHcCCcc---------ccccccccchhhhhcccccHHHHHH
Confidence 445589999999875 3455678899999999999999753
No 10
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=22.03 E-value=48 Score=29.92 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=15.6
Q ss_pred CCCce-eeEeeeEEEeecCCCcc-cc
Q 033222 15 KNPTK-IKNYGIWLRYQSRTGYH-NM 38 (124)
Q Consensus 15 k~p~~-vknyGI~lrY~Sr~gth-Nm 38 (124)
|||+= =-.|||+||-|+ ++.| ||
T Consensus 32 knPtWaSVTYGIFLCiDC-SAvHRnL 56 (454)
T KOG0706|consen 32 KNPTWASVTYGIFLCIDC-SAVHRNL 56 (454)
T ss_pred CCCCceeecceEEEEEec-chhhhcc
Confidence 45554 357999999984 5555 54
No 11
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=21.97 E-value=76 Score=26.87 Aligned_cols=29 Identities=17% Similarity=0.542 Sum_probs=24.6
Q ss_pred cceeeeccCChhHHHHHHHHHHhhcccccC
Q 033222 37 NMYKEYRDTTLNGAVEQMYTEMASRHRVRS 66 (124)
Q Consensus 37 NmyKEyRdls~~gAVeq~YsemgsRHrar~ 66 (124)
|||+.||.+.+.. ++-||+-|-+-|+..+
T Consensus 99 d~yrrfr~vde~~-i~eiyrl~e~~~k~sq 127 (296)
T COG5242 99 DMYRRFRNVDETD-ITEIYRLIEHPHKNSQ 127 (296)
T ss_pred hhhhhhcccchHH-HHHHHHHHhCcccccc
Confidence 8999999998865 6778999999999443
No 12
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.54 E-value=1.3e+02 Score=23.11 Aligned_cols=35 Identities=11% Similarity=0.293 Sum_probs=24.6
Q ss_pred ceeeeccCChhHHHHHHHHHHhhccc----ccCCCceEE
Q 033222 38 MYKEYRDTTLNGAVEQMYTEMASRHR----VRSPCIQII 72 (124)
Q Consensus 38 myKEyRdls~~gAVeq~YsemgsRHr----ar~~~IqIi 72 (124)
-||++.+++.++|++.+..-+..... ....+|.|-
T Consensus 170 ~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ 208 (211)
T cd03749 170 HFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIA 208 (211)
T ss_pred hhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEE
Confidence 34444489999999999998887655 444555543
No 13
>PF06353 DUF1062: Protein of unknown function (DUF1062); InterPro: IPR009412 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.07 E-value=65 Score=24.47 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.1
Q ss_pred eEeeeEEEee--cCCCcccceee
Q 033222 21 KNYGIWLRYQ--SRTGYHNMYKE 41 (124)
Q Consensus 21 knyGI~lrY~--Sr~gthNmyKE 41 (124)
|+-.|||.|. .|..|+||.--
T Consensus 6 K~LDVWLIYrC~~C~~TwN~ti~ 28 (142)
T PF06353_consen 6 KLLDVWLIYRCEKCDYTWNMTIF 28 (142)
T ss_pred ccccEEEEEEcccCcCccccceE
Confidence 6778999998 67888899743
No 14
>PHA03066 Hypothetical protein; Provisional
Probab=21.04 E-value=60 Score=24.12 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=16.8
Q ss_pred CCceeeEeeeEEEeecCCCcc
Q 033222 16 NPTKIKNYGIWLRYQSRTGYH 36 (124)
Q Consensus 16 ~p~~vknyGI~lrY~Sr~gth 36 (124)
+|...-.=-||+.|||++|+.
T Consensus 60 ~~~~~~~~~v~~~Yds~~~~V 80 (110)
T PHA03066 60 DPETVISTQVNTYYNSSIGTV 80 (110)
T ss_pred CCCCcccceEEEEEcCcCCeE
Confidence 455666667999999999986
No 15
>PRK09744 DNA-binding transcriptional regulator DicC; Provisional
Probab=20.06 E-value=6.8 Score=27.28 Aligned_cols=20 Identities=35% Similarity=0.830 Sum_probs=15.9
Q ss_pred EEeecCCCcccceeeeccCChhHHH
Q 033222 27 LRYQSRTGYHNMYKEYRDTTLNGAV 51 (124)
Q Consensus 27 lrY~Sr~gthNmyKEyRdls~~gAV 51 (124)
|.|+.. +|.|||..+++|-+
T Consensus 50 LK~~p~-----lY~~~~~~~~~~~~ 69 (75)
T PRK09744 50 LQYDPK-----VYDEYRKAKRAGRL 69 (75)
T ss_pred eecCHH-----HHHHHHHhcccccc
Confidence 677754 99999999888754
Done!