Query 033222
Match_columns 124
No_of_seqs 101 out of 270
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:42:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_S 60S ribosomal protein L 100.0 3.5E-60 1.2E-64 367.7 6.4 115 10-124 64-178 (178)
2 4a18_X RPL18A, 60S ribosomal p 100.0 1.6E-59 5.3E-64 366.8 9.9 114 10-123 76-189 (189)
3 3u5e_S L18A, 60S ribosomal pro 100.0 2.4E-59 8.2E-64 361.5 10.1 110 10-124 62-172 (172)
4 3j21_l 50S ribosomal protein L 100.0 2.9E-38 9.9E-43 216.7 7.3 74 19-92 2-75 (77)
5 4adx_G RPLX; ribosome, protein 100.0 4E-36 1.4E-40 206.5 6.5 75 18-92 3-77 (78)
6 2nr7_A Secretion activator pro 48.0 7.2 0.00025 30.0 1.5 42 16-57 27-74 (195)
7 2kfd_A PRE-mRNA-processing pro 36.0 16 0.00054 24.1 1.6 21 38-58 45-66 (69)
8 2ikb_A Hypothetical protein NM 31.7 9.8 0.00033 28.3 -0.0 39 16-57 25-63 (167)
9 3dwv_A Glutathione peroxidase- 27.7 1.2E+02 0.0041 20.9 5.2 49 47-101 64-117 (187)
10 2f8a_A Glutathione peroxidase 19.4 1.2E+02 0.0042 21.7 4.0 47 49-101 67-123 (208)
No 1
>3iz5_S 60S ribosomal protein L18A (L18AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_S 3izc_S 3izs_S
Probab=100.00 E-value=3.5e-60 Score=367.70 Aligned_cols=115 Identities=88% Similarity=1.372 Sum_probs=100.0
Q ss_pred eEeccCCCceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCccccc
Q 033222 10 MEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQ 89 (124)
Q Consensus 10 ~eI~Ek~p~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikq 89 (124)
-||+|++|++|||||||||||||||||||||||||+|++|||+|||+|||||||||+++|||++|+||+++||+||+|+|
T Consensus 64 ~~i~Ek~p~~VKNfGIwlrYdSrsgtHNmyKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~ikQ 143 (178)
T 3iz5_S 64 NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQ 143 (178)
T ss_dssp ECCCSSSSSCCCCCEEEEEEECSSSEEEEEEECCCSCHHHHHHHHHHHHHTTSCCCTTCCCEEEEECCCTTTCCSCHHHH
T ss_pred EEEccCCCceeEEeeEEEEEcccCCcccchhhhhhccHHHHHHHHHHHhhhhhcccccceEEEeEEEEcHHHcCCHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccceecccCCCCcccCCCeeecCCcCCC
Q 033222 90 FHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124 (124)
Q Consensus 90 f~~~~ikFPl~~r~~~~~~~~~~~~F~~~rP~t~~ 124 (124)
|++++|||||||++++.+.++.+.+|+++||+||+
T Consensus 144 f~~skikFPl~hrv~~~~~~~~~~~F~~~rP~t~~ 178 (178)
T 3iz5_S 144 FHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178 (178)
T ss_dssp HHHHHHSSSSSSSSSSSGGGSSCC-----------
T ss_pred hhcCCCccccceeecccccccccCeEeccCCccCC
Confidence 99999999999999987555667899999999985
No 2
>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X
Probab=100.00 E-value=1.6e-59 Score=366.77 Aligned_cols=114 Identities=53% Similarity=0.816 Sum_probs=110.2
Q ss_pred eEeccCCCceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCccccc
Q 033222 10 MEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQ 89 (124)
Q Consensus 10 ~eI~Ek~p~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikq 89 (124)
-||+|++|++|||||||||||||||||||||||||+|++|||+|||+|||||||||+++|||++|+||+++||+||+|+|
T Consensus 76 ~~i~Ek~p~~VKNfGIwlrYdSRsgtHNmYKEYRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~vkQ 155 (189)
T 4a18_X 76 NEIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQIIRTATLEPKDIKRPATLA 155 (189)
T ss_dssp EEECCSCTTSCEEEEEEEEEECSSCEEEEEEEEEESCHHHHHHHHHHHHHHTTCCCGGGCEEEEEEECCGGGCCCHHHHT
T ss_pred EEEccCCCceeEEeeEEEEEcccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEEEEEEECHHHccCHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccceecccCCCCcccCCCeeecCCcCC
Q 033222 90 FHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 123 (124)
Q Consensus 90 f~~~~ikFPl~~r~~~~~~~~~~~~F~~~rP~t~ 123 (124)
|+++||||||||++++.+.++++.+|+++||+||
T Consensus 156 f~~skikFPl~hrv~~~~~~~~~~~F~~~rP~t~ 189 (189)
T 4a18_X 156 MRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189 (189)
T ss_dssp TCCSCCEEECCCCCCCCSSGGGCCSSCSSCCCCC
T ss_pred HhccCCccccceeecccccccccceeeccCCCCC
Confidence 9999999999999998776667889999999997
No 3
>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S 4b6a_S
Probab=100.00 E-value=2.4e-59 Score=361.52 Aligned_cols=110 Identities=45% Similarity=0.769 Sum_probs=106.0
Q ss_pred eEeccCCCceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeee-cCCCCCCcccc
Q 033222 10 MEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI-PAKLCKRESTK 88 (124)
Q Consensus 10 ~eI~Ek~p~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI-~~~e~~r~~ik 88 (124)
-||+|++|++|||||||||||||||||||||||||+|++|||+|||+|||||||||+++|||++|+|| +++||+||+|+
T Consensus 62 ~~i~Ek~p~~VKNfGIwlrYdSrsgtHNmYKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~~rrp~vk 141 (172)
T 3u5e_S 62 NQINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVK 141 (172)
T ss_dssp EECCCSSTTSCEEEEEEEEEECSSCEEEEEEEEEESSHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECCSTTSCCCHHHH
T ss_pred EEEccCCCceeEEeeEEEEEcccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEeeeEEEcchhcCCChhhH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred ccccCCCcccceecccCCCCcccCCCeeecCCcCCC
Q 033222 89 QFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 124 (124)
Q Consensus 89 qf~~~~ikFPl~~r~~~~~~~~~~~~F~~~rP~t~~ 124 (124)
||+++||||||||++++. +++|+++||+||+
T Consensus 142 Qf~~skikFPl~hrv~~~-----~~~F~~~rP~t~~ 172 (172)
T 3u5e_S 142 QFLTKDLKFPLPHRVQKS-----TKTFSYKRPSTFY 172 (172)
T ss_dssp GGGSTTCEEECCSCCCCC-----SSSCBSSCCCCCC
T ss_pred hhhcCCCccccccccccC-----CCceeccCCCCCC
Confidence 999999999999999874 3679999999996
No 4
>3j21_l 50S ribosomal protein LX; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.9e-38 Score=216.66 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=72.4
Q ss_pred eeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCcccccccc
Q 033222 19 KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHN 92 (124)
Q Consensus 19 ~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikqf~~ 92 (124)
.|||||||++|+|++|+|||||||||+|++|||||||+||||||++|+++|+|++|+||+++||+||+|+||+.
T Consensus 2 ~vK~f~V~g~y~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gsrHr~kr~~I~I~~V~eI~~~e~~~~~vkql~~ 75 (77)
T 3j21_l 2 KVKVFRVHGYFEKNGRKFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPEEAEDIVVRRLSL 75 (77)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTTCCSSHHHHHHTT
T ss_pred ceEEEEEEEEEEcCCCeEeEEEEEecCCHhHHHHHHHHHHhhhhCCCccceEEEEEEEeCHHHcCCHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999974
No 5
>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A
Probab=100.00 E-value=4e-36 Score=206.46 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=73.0
Q ss_pred ceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHHHhhcccccCCCceEEEeeeecCCCCCCcccccccc
Q 033222 18 TKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHN 92 (124)
Q Consensus 18 ~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~~~e~~r~~ikqf~~ 92 (124)
..|||||||++|+|++|+|||||||||++++||||+|||||||||++|+++|+|++|+||+++||+||.|+||+.
T Consensus 3 ~~vK~f~V~g~~~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gSrHrvkr~~I~I~~V~eI~~~e~~~~~ikql~~ 77 (78)
T 4adx_G 3 MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISPEEVQDPVVKALVQ 77 (78)
T ss_pred ceeEEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCccceEEEEEEEeCHHHcCCHHHHHHhc
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999974
No 6
>2nr7_A Secretion activator protein, putative; APCC85792, porphyromonas gingivalis W83 structural genomics, PSI-2, protein structure initiative; 1.30A {Porphyromonas gingivalis} SCOP: d.2.1.9
Probab=47.96 E-value=7.2 Score=29.98 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=29.9
Q ss_pred CCceeeEeeeEEEeecCCCc-----c-cceeeeccCChhHHHHHHHHH
Q 033222 16 NPTKIKNYGIWLRYQSRTGY-----H-NMYKEYRDTTLNGAVEQMYTE 57 (124)
Q Consensus 16 ~p~~vknyGI~lrY~Sr~gt-----h-NmyKEyRdls~~gAVeq~Yse 57 (124)
.|+-.=||||..+.-++.|+ - .-....|+||.++|++.+|..
T Consensus 27 D~GG~T~~GIT~~t~~~~g~~~~~~g~~~~~dv~~Lt~~~a~~~Iy~~ 74 (195)
T 2nr7_A 27 DAGGATNKGVTIATWKRVGYDKDGDGDIDVEDLKLLTDDDVLNRVLKP 74 (195)
T ss_dssp GGTCCEEECCCCCCTTTSSCBCTTSTTCCCSCGGGSCHHHHHHHTHHH
T ss_pred CCCCCcchhhhHHHHHhcCCccccCCCCCHHHHHhCCHHHHHHHHHHH
Confidence 35567799999886555553 2 223448999999999977753
No 7
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=36.03 E-value=16 Score=24.13 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=17.5
Q ss_pred ceeeeccC-ChhHHHHHHHHHH
Q 033222 38 MYKEYRDT-TLNGAVEQMYTEM 58 (124)
Q Consensus 38 myKEyRdl-s~~gAVeq~Ysem 58 (124)
-|-||+|+ .++....|+|+++
T Consensus 45 ~~~Ey~~l~~E~~v~~qif~~F 66 (69)
T 2kfd_A 45 ESLEYKALGDEDNIRRQIFEDF 66 (69)
T ss_dssp TSTTSGGGTTSHHHHHHHHHHH
T ss_pred cCHHHHHhhccHHHHHHHHHhc
Confidence 46799999 5568899999986
No 8
>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, PR structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.2.1.9 PDB: 2is5_A*
Probab=31.70 E-value=9.8 Score=28.26 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=26.7
Q ss_pred CCceeeEeeeEEEeecCCCcccceeeeccCChhHHHHHHHHH
Q 033222 16 NPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTE 57 (124)
Q Consensus 16 ~p~~vknyGI~lrY~Sr~gthNmyKEyRdls~~gAVeq~Yse 57 (124)
.|+=.=||||..+.-.+.|.. ...|+||.++|.+-..++
T Consensus 25 D~GG~T~~GIt~~~~~~~g~~---~dv~~Lt~~~a~~IY~~~ 63 (167)
T 2ikb_A 25 DPGGETNWGITKRTAQANGYN---GSMRAMTREQAISIYRKA 63 (167)
T ss_dssp CGGGCEETTEEHHHHHHTTCC---SCGGGCCHHHHHHHHHHH
T ss_pred CCCCccccchhHHHHHHcCCc---chhhhcCHHHHHHHHHHH
Confidence 355577999998865555642 357899999988743333
No 9
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=27.72 E-value=1.2e+02 Score=20.90 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHhhcccccCCCceEEEeeeec---CCCCCCcccccccc-C-CCccccee
Q 033222 47 LNGAVEQMYTEMASRHRVRSPCIQIIRTATIP---AKLCKRESTKQFHN-S-KIKFPLVF 101 (124)
Q Consensus 47 ~~gAVeq~YsemgsRHrar~~~IqIi~V~eI~---~~e~~r~~ikqf~~-~-~ikFPl~~ 101 (124)
+..++.++|.+++.+ .++|+.|..=. .+.-....+++|.. . ++.||+..
T Consensus 64 ~~p~l~~l~~~~~~~------~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~ 117 (187)
T 3dwv_A 64 GYETATTLYNKYKSQ------GFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMA 117 (187)
T ss_dssp HHHHHHHHHHHHGGG------TCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBC
T ss_pred HHHHHHHHHHHhhhC------CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceee
Confidence 345778888888654 58888875321 22234567888887 4 89999884
No 10
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=19.39 E-value=1.2e+02 Score=21.70 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcccccCCCceEEEeeeec--CCC-CCCccccccc-------cCCCccccee
Q 033222 49 GAVEQMYTEMASRHRVRSPCIQIIRTATIP--AKL-CKRESTKQFH-------NSKIKFPLVF 101 (124)
Q Consensus 49 gAVeq~YsemgsRHrar~~~IqIi~V~eI~--~~e-~~r~~ikqf~-------~~~ikFPl~~ 101 (124)
..+.++|.+++.+ .++|+.|.-=. ..+ -....+++|+ ..++.||+..
T Consensus 67 p~l~~l~~~~~~~------g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~ 123 (208)
T 2f8a_A 67 TQMNELQRRLGPR------GLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFE 123 (208)
T ss_dssp HHHHHHHHHHGGG------TEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBC
T ss_pred HHHHHHHHHccCC------CeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEE
Confidence 4567778777654 58888875310 111 1235678887 4689999874
Done!