BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033223
MSVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVH
PTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTE
NRLW

High Scoring Gene Products

Symbol, full name Information P value
AT5G14710 protein from Arabidopsis thaliana 1.5e-42
psmg3
proteasome (prosome, macropain) assembly chaperone 3
gene_product from Danio rerio 4.4e-13
Psmg3
proteasome (prosome, macropain) assembly chaperone 3
protein from Mus musculus 5.2e-10

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033223
        (124 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2185430 - symbol:AT5G14710 "AT5G14710" species...   450  1.5e-42   1
ZFIN|ZDB-GENE-040718-262 - symbol:psmg3 "proteasome (pros...   172  4.4e-13   1
MGI|MGI:1913756 - symbol:Psmg3 "proteasome (prosome, macr...   143  5.2e-10   1


>TAIR|locus:2185430 [details] [associations]
            symbol:AT5G14710 "AT5G14710" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009062 "fatty acid catabolic process"
            evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000502
            EMBL:AL391149 eggNOG:NOG283811 HOGENOM:HOG000006024 KO:K11877
            InterPro:IPR018788 Pfam:PF10178 UniGene:At.20062 UniGene:At.66665
            EMBL:AY084903 EMBL:BT005169 EMBL:AK117635 IPI:IPI00523339
            PIR:T51416 RefSeq:NP_196975.1 ProteinModelPortal:Q9LER5 SMR:Q9LER5
            PRIDE:Q9LER5 DNASU:831323 EnsemblPlants:AT5G14710.1 GeneID:831323
            KEGG:ath:AT5G14710 TAIR:At5g14710 InParanoid:Q9LER5 OMA:ILHARKE
            PhylomeDB:Q9LER5 ProtClustDB:CLSN2687248 ArrayExpress:Q9LER5
            Genevestigator:Q9LER5 Uniprot:Q9LER5
        Length = 124

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 89/124 (71%), Positives = 103/124 (83%)

Query:     1 MSVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVH 60
             M  L+ NFPV  +K+S + K NKT+I+ICSY+DH L+IATQIG MGTILHARK+  +SV 
Sbjct:     1 MESLDTNFPVRHRKVSFESKGNKTEIVICSYEDHILIIATQIGAMGTILHARKEEGMSVE 60

Query:    61 PTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTE 120
             PTFSVSVIFGKRDEPML A AR+LIEHISS   S+PLVLSLGLKDHS+ETLK IV+ V E
Sbjct:    61 PTFSVSVIFGKRDEPMLTATARRLIEHISSIVPSKPLVLSLGLKDHSSETLKEIVATVIE 120

Query:   121 NRLW 124
             NRLW
Sbjct:   121 NRLW 124


>ZFIN|ZDB-GENE-040718-262 [details] [associations]
            symbol:psmg3 "proteasome (prosome, macropain)
            assembly chaperone 3" species:7955 "Danio rerio" [GO:0008150
            "biological_process" evidence=ND] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0000502 "proteasome complex" evidence=IEA]
            ZFIN:ZDB-GENE-040718-262 GO:GO:0000502 CTD:84262 eggNOG:NOG283811
            GeneTree:ENSGT00390000000324 HOGENOM:HOG000006024
            HOVERGEN:HBG061282 KO:K11877 OMA:VTFVSQE OrthoDB:EOG49KFS2
            InterPro:IPR018788 Pfam:PF10178 EMBL:BX908797 EMBL:BC076368
            IPI:IPI00489404 RefSeq:NP_001002529.1 UniGene:Dr.86194 SMR:Q6DGH7
            DNASU:436802 Ensembl:ENSDART00000040723 GeneID:436802
            KEGG:dre:436802 InParanoid:Q6DGH7 NextBio:20831234 Uniprot:Q6DGH7
        Length = 122

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 36/120 (30%), Positives = 68/120 (56%)

Query:     9 PVVQ-KKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDA---DISVHPTFS 64
             PV++ K+    +  N+T ++   + ++  ++ TQ G +GT++    D    DISV P ++
Sbjct:     5 PVIRSKQAEKTINGNQTQVVCTEFSNYIFIVLTQYGKIGTLVSITPDTRSGDISV-PMYT 63

Query:    65 VSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
               V+ GK DEP+    A+ +   +S    ++P++L L LKD+SAET+K +   +   ++W
Sbjct:    64 SKVLLGK-DEPLTHVYAKNVATFVSQESGNRPILLGLSLKDNSAETMKTVKDMIKSCQVW 122


>MGI|MGI:1913756 [details] [associations]
            symbol:Psmg3 "proteasome (prosome, macropain) assembly
            chaperone 3" species:10090 "Mus musculus" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            MGI:MGI:1913756 EMBL:AK012616 EMBL:BC027410 EMBL:BC058692
            IPI:IPI00112701 RefSeq:NP_079880.1 UniGene:Mm.29070
            ProteinModelPortal:Q9CZH3 SMR:Q9CZH3 PhosphoSite:Q9CZH3
            PaxDb:Q9CZH3 PRIDE:Q9CZH3 Ensembl:ENSMUST00000031531 GeneID:66506
            KEGG:mmu:66506 UCSC:uc009ahg.1 CTD:84262 eggNOG:NOG283811
            GeneTree:ENSGT00390000000324 HOGENOM:HOG000006024
            HOVERGEN:HBG061282 InParanoid:Q9CZH3 KO:K11877 OMA:VTFVSQE
            OrthoDB:EOG49KFS2 NextBio:321892 Bgee:Q9CZH3 Genevestigator:Q9CZH3
            InterPro:IPR018788 Pfam:PF10178 Uniprot:Q9CZH3
        Length = 122

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 33/120 (27%), Positives = 62/120 (51%)

Query:     9 PVVQKKLSVDLKRNKTDIIICS-YDDHFLVIATQIGTMGTILHARKDA---DISVHPTFS 64
             P+V  K   ++       ++C+ +  H LV+ TQ G MGT++         DIS  P  +
Sbjct:     5 PLVVSKQKTEVVCGVPTQVVCTAFSSHILVVVTQFGKMGTLVSLEPSNVANDIS-KPVLT 63

Query:    65 VSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
               V+ G+ DEP++   A+ L+  +S    ++ ++L++ +KD S E LK +   +   ++W
Sbjct:    64 TRVLLGQ-DEPLIHVFAKNLVAFVSQEAGNRAVLLAMAVKDKSMERLKALKEVIRLCQVW 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      124       124   0.00091  102 3  11 22  0.49    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  542 (58 KB)
  Total size of DFA:  112 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.24u 0.21s 13.45t   Elapsed:  00:00:01
  Total cpu time:  13.24u 0.21s 13.45t   Elapsed:  00:00:01
  Start:  Mon May 20 22:06:31 2013   End:  Mon May 20 22:06:32 2013

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