BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033223
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z5E|A Chain A, Crystal Structure Of Proteasome Assembling Chaperone 3
pdb|2Z5E|B Chain B, Crystal Structure Of Proteasome Assembling Chaperone 3
Length = 122
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 24 TDIIICSYDDHFLVIATQIGTMGTILHARKDA---DISVHPTFSVSVIFGKRDEPMLVAC 80
T ++ ++ H LV+ TQ G MGT++ + D+S P + V+ G +DEP++
Sbjct: 21 TQVVCTAFSSHILVVVTQFGKMGTLVSLEPSSVASDVS-KPVLTTKVLLG-QDEPLIHVF 78
Query: 81 ARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
A+ L+ +S ++ ++L++ +KD S E LK + + ++W
Sbjct: 79 AKNLVAFVSQEAGNRAVLLAVAVKDKSMEGLKALREVIRVCQVW 122
>pdb|3I1J|A Chain A, Structure Of A Putative Short Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3I1J|B Chain B, Structure Of A Putative Short Chain Dehydrogenase From
Pseudomonas Syringae
Length = 247
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 66 SVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAV 118
SV+ R E L + Q I S+G QPL+++L L++ +A+ + + + V
Sbjct: 40 SVVLLGRTEASLAEVSDQ----IKSAGQPQPLIIALNLENATAQQYRELAARV 88
>pdb|3NH4|A Chain A, Crystal Structure Of Murine Aminoacylase 3
Length = 327
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 37 VIATQIGTMGTILHARKDADISVHPTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQP 96
V+A T + +D + S TF S D+P V AR+L + + GT Q
Sbjct: 60 VLANPAATAACCRYLDRDLNRSCTLTFLGST--ATPDDPYEVKRARELNQLLGPKGTGQA 117
Query: 97 LVLSLGLKDHSAET 110
+L L + +A T
Sbjct: 118 FDFTLDLHNTTANT 131
>pdb|3NFZ|A Chain A, Crystal Structure Of Murine Aminoacylase 3 In Complex With
N-Acetyl-L- Tyrosine
pdb|3NH5|A Chain A, Crystal Structure Of E177a-Mutant Murine Aminoacylase 3
pdb|3NH8|A Chain A, Crystal Structure Of Murine Aminoacylase 3 In Complex With
N-Acetyl-S- 1,2-Dichlorovinyl-L-Cysteine
Length = 327
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 37 VIATQIGTMGTILHARKDADISVHPTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQP 96
V+A T + +D + S TF S D+P V AR+L + + GT Q
Sbjct: 60 VLANPAATAACCRYLDRDLNRSCTLTFLGST--ATPDDPYEVKRARELNQLLGPKGTGQA 117
Query: 97 LVLSLGLKDHSAET 110
+L L + +A T
Sbjct: 118 FDFTLDLHNTTANT 131
>pdb|3E97|A Chain A, Crystal Structure Of Transcriptional Regulator Of CrpFNR
Family (Yp_604437.1) From Deinococcus Geothermalis Dsm
11300 At 1.86 A Resolution
Length = 231
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 67 VIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAET 110
+ FG+ E L L ++G QP VL LG +D A T
Sbjct: 142 IAFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIXART 185
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 50 HARKDADISVHPTFSVSVIFGKRDEPM 76
A + +S H T S+IFG+ D P+
Sbjct: 54 EANANGSMSTHGTHVASIIFGQHDSPV 80
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Cysteine
Sulfamoyl Adenylate
pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Proline
Sulfamoyl Adenylate
pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Alanine
Sulfamoyl Adenylate
Length = 501
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 37 VIATQIGTMGTILHARKDADISVHPTFSVSVIFGKRDEPMLVACARQLIEHISSSG 92
VIA+ I G D++ H V +IF K E ++ AC R+L + ++G
Sbjct: 292 VIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEAC-RELRSRLEAAG 346
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 22 NKTDIIICSYDDHFLVIATQIGTMGTILHARKD-ADISVHPTFS-VSVIFGKRDEPMLVA 79
N DII C +D + I + + MG K+ I H TF+ V IFG D +
Sbjct: 125 NAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGK 184
Query: 80 CARQLIEHISSSGTSQPLVL 99
+ I+ S S P +
Sbjct: 185 ISFPAIQAAPSFSNSFPQIF 204
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 22 NKTDIIICSYDDHFLVIATQIGTMGTILHARKD-ADISVHPTFS-VSVIFGKRDEPMLVA 79
N DII C +D + I + + MG K+ I H TF+ V IFG D +
Sbjct: 137 NAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGK 196
Query: 80 CARQLIEHISSSGTSQPLVL 99
+ I+ S S P +
Sbjct: 197 ISFPAIQAAPSFSNSFPQIF 216
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 22 NKTDIIICSYDDHFLVIATQIGTMGTILHARKD-ADISVHPTFS-VSVIFGKRDEPMLVA 79
N DII C +D + I + + MG K+ I H TF+ V IFG D +
Sbjct: 125 NAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGK 184
Query: 80 CARQLIEHISSSGTSQPLVL 99
+ I+ S S P +
Sbjct: 185 ISFPAIQAAPSFSNSFPQIF 204
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 22 NKTDIIICSYDDHFLVIATQIGTMGTILHARKD-ADISVHPTFS-VSVIFGKRDEPMLVA 79
N DII C +D + I + + MG K+ I H TF+ V IFG D +
Sbjct: 125 NAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGK 184
Query: 80 CARQLIEHISSSGTSQPLVL 99
+ I+ S S P +
Sbjct: 185 ISFPAIQAAPSFSNSFPQIF 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,194,832
Number of Sequences: 62578
Number of extensions: 107411
Number of successful extensions: 199
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 12
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)