BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033223
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55G88|PSMG3_DICDI Proteasome assembly chaperone 3 OS=Dictyostelium discoideum
GN=psmG3 PE=3 SV=1
Length = 145
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 4 LEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARK-DADISVHPT 62
+E+N PV K LS + TDI I S+ D + +Q T + A K D + P+
Sbjct: 25 IEKNHPVKSKVLSKKINNVDTDIAISSFADAIFITISQNQKFNTWIRASKSDGILLDEPS 84
Query: 63 FSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENR 122
+ + + G + + ARQLIE+I + +++ L+LS+ + D S +T K I+S + EN+
Sbjct: 85 YQIDTLLGNNQDVLFSIYARQLIENIGET-SNKSLMLSISITDKSKDTFKQILSTIFENK 143
Query: 123 LW 124
+W
Sbjct: 144 VW 145
>sp|Q2NKS3|PSMG3_BOVIN Proteasome assembly chaperone 3 OS=Bos taurus GN=PSMG3 PE=2 SV=1
Length = 122
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 24 TDIIICSYDDHFLVIATQIGTMGTILHARKD---ADISVHPTFSVSVIFGKRDEPMLVAC 80
T ++ ++ H LV+ TQ+G MGT++ +D+ P + V+ GK DEP++
Sbjct: 21 TQVVCTAFSSHILVVVTQLGKMGTLVSLEPSSVTSDVG-KPVLTTKVLLGK-DEPLVHVF 78
Query: 81 ARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
A+ L+ +S ++ ++L+L KD S E +K + + ++W
Sbjct: 79 AKNLVAFVSQEAGNRAVLLALATKDKSMEAVKALQEVIQACQVW 122
>sp|Q9CZH3|PSMG3_MOUSE Proteasome assembly chaperone 3 OS=Mus musculus GN=Psmg3 PE=1 SV=1
Length = 122
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 24 TDIIICSYDDHFLVIATQIGTMGTILHARKDA---DISVHPTFSVSVIFGKRDEPMLVAC 80
T ++ ++ H LV+ TQ G MGT++ DIS P + V+ G +DEP++
Sbjct: 21 TQVVCTAFSSHILVVVTQFGKMGTLVSLEPSNVANDIS-KPVLTTRVLLG-QDEPLIHVF 78
Query: 81 ARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
A+ L+ +S ++ ++L++ +KD S E LK + + ++W
Sbjct: 79 AKNLVAFVSQEAGNRAVLLAMAVKDKSMERLKALKEVIRLCQVW 122
>sp|Q9BT73|PSMG3_HUMAN Proteasome assembly chaperone 3 OS=Homo sapiens GN=PSMG3 PE=1 SV=1
Length = 122
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 24 TDIIICSYDDHFLVIATQIGTMGTILHARKDA---DISVHPTFSVSVIFGKRDEPMLVAC 80
T ++ ++ H LV+ TQ G MGT++ + D+S P + V+ G +DEP++
Sbjct: 21 TQVVCTAFSSHILVVVTQFGKMGTLVSLEPSSVASDVS-KPVLTTKVLLG-QDEPLIHVF 78
Query: 81 ARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
A+ L+ +S ++ ++L++ +KD S E LK + + ++W
Sbjct: 79 AKNLVAFVSQEAGNRAVLLAVAVKDKSMEGLKALREVIRVCQVW 122
>sp|A7SP74|PSMG3_NEMVE Proteasome assembly chaperone 3 OS=Nematostella vectensis GN=psmg3
PE=3 SV=1
Length = 135
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 2 SVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHP 61
+ ++ + PV ++ ++ + TD + Y D LV+ TQ GT++ +D ++ P
Sbjct: 3 AAIDGSLPVCRQSAAL-IDGVHTDFLASWYSDRILVLVTQFQKFGTLVSVTRDQPVA-RP 60
Query: 62 ----------TFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETL 111
TF+ V+ G D P+ +Q+ + I+ +P+++++ L++HS E L
Sbjct: 61 DQAQGGTDSHTFTTKVLMGD-DLPIWHVYGQQIFKAINGEDGCKPVLVAIALQNHSPEIL 119
Query: 112 KGIVSAVTENR 122
K I+ + R
Sbjct: 120 KCILGQLESIR 130
>sp|Q1CT27|THIE_HELPH Thiamine-phosphate synthase OS=Helicobacter pylori (strain HPAG1)
GN=thiE PE=3 SV=1
Length = 219
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 44 TMGTILHARKDADISVHPTFSVSVIF---GKRDEPMLVACARQLIEHISSSGTSQPLVLS 100
++ T+ A K + F V IF K+D+ ++ +L++ I SG +PL+
Sbjct: 123 SVNTLEQALKARHLDAVAYFGVGPIFPTPSKKDKQVV---GVELLKKIRDSGVKKPLIAI 179
Query: 101 LGLKDHSAETLK-----GIVSAVTENR 122
G+ H+A L+ ++SA+T+ R
Sbjct: 180 GGITTHNASKLREYGGIAVISAITQAR 206
>sp|Q6P7W0|SENP6_MOUSE Sentrin-specific protease 6 OS=Mus musculus GN=Senp6 PE=1 SV=3
Length = 1132
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 3 VLEQNFPVVQKKLSVDLKRNKTDII---------ICSYDDHFLVIATQIGT--MGTILHA 51
V Q P V +KLS+ L+ +K D + I S ++ ++++ Q G ++
Sbjct: 525 VFLQAIPAVYQKLSMQLQMSKEDKVWNDCKGINRITSLEEQYIILIFQTGLDHQAEVVFE 584
Query: 52 RKDADISVH---PTFSVSVIFGKRDEPMLVACARQLIEHI 88
DI + P F ++F + + LVAC R E I
Sbjct: 585 SIITDIGIRNNVPNFFAKILFDEANS-RLVACTRSYEESI 623
>sp|B0TDI0|ADDA_HELMI ATP-dependent helicase/nuclease subunit A OS=Heliobacterium
modesticaldum (strain ATCC 51547 / Ice1) GN=addA PE=3
SV=1
Length = 1396
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 80 CARQLIEHISSSGTSQPLVLSLGLKDHSAETL 111
C R L++ +S G P L+L LK+H AE L
Sbjct: 409 CLRLLLDESASPGVPVPSSLALELKEHFAEVL 440
>sp|Q4WYG2|NRPS5_ASPFU Nonribosomal peptide synthetase 5 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=NRPS5
PE=3 SV=2
Length = 2202
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 41 QIGTMGTILHAR--KDADISVHPTFSVSVIFGKRDEPMLV 78
Q G + + +H R K D+S P VS+I G + MLV
Sbjct: 1746 QTGNLSSFVHGRITKSFDLSTEPPVDVSIIIGTPMQAMLV 1785
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,423,920
Number of Sequences: 539616
Number of extensions: 1459647
Number of successful extensions: 3339
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3330
Number of HSP's gapped (non-prelim): 14
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)