Query 033223
Match_columns 124
No_of_seqs 100 out of 131
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 11:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4828 Uncharacterized conser 100.0 2.3E-39 5E-44 231.1 14.9 122 2-123 2-125 (125)
2 PF10178 DUF2372: Uncharacteri 100.0 1.6E-32 3.5E-37 189.5 10.3 86 37-123 1-90 (90)
3 PF10448 chaperone_DMP: 20S pr 97.6 0.00063 1.4E-08 50.4 8.8 83 21-104 20-121 (144)
4 PF08816 Ivy: Inhibitor of ver 82.0 13 0.00029 26.7 7.8 70 14-83 35-112 (118)
5 PRK01271 4-oxalocrotonate taut 53.6 56 0.0012 21.6 5.4 54 60-113 1-54 (76)
6 PF09651 Cas_APE2256: CRISPR-a 48.7 50 0.0011 23.8 4.9 54 67-121 26-80 (136)
7 PF06309 Torsin: Torsin; Inte 45.8 40 0.00088 24.6 4.1 32 68-101 27-58 (127)
8 PF02878 PGM_PMM_I: Phosphoglu 35.8 1.5E+02 0.0033 20.7 5.9 49 74-122 20-68 (137)
9 COG0611 ThiL Thiamine monophos 30.4 1.4E+02 0.0031 24.9 5.5 48 74-121 60-109 (317)
10 KOG1598 Transcription initiati 29.9 23 0.0005 31.7 0.7 81 22-103 123-216 (521)
11 PF14401 RLAN: RimK-like ATPgr 28.4 99 0.0022 22.9 3.9 32 58-89 81-112 (153)
12 COG0033 Pgm Phosphoglucomutase 27.2 1.8E+02 0.004 26.0 5.7 56 68-123 28-83 (524)
13 PF15609 PRTase_2: Phosphoribo 26.4 1.4E+02 0.003 23.3 4.5 43 60-102 16-61 (191)
14 PF13587 DJ-1_PfpI_N: N-termin 24.5 51 0.0011 19.0 1.3 14 34-47 2-15 (38)
15 PRK13938 phosphoheptose isomer 24.4 1.8E+02 0.0039 22.2 4.8 38 73-114 96-133 (196)
16 PRK12358 putative 6-phosphoglu 22.7 2.6E+02 0.0057 21.7 5.5 49 73-124 9-57 (239)
17 PF00479 G6PD_N: Glucose-6-pho 22.3 55 0.0012 24.8 1.5 25 93-117 28-52 (183)
18 PF12112 DUF3579: Protein of u 21.2 44 0.00096 23.2 0.7 31 93-123 55-85 (92)
19 PRK00115 hemE uroporphyrinogen 20.4 2.6E+02 0.0055 22.8 5.2 49 67-121 293-344 (346)
20 KOG4649 PQQ (pyrrolo-quinoline 20.2 1.4E+02 0.003 25.2 3.5 43 32-74 291-343 (354)
No 1
>KOG4828 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.3e-39 Score=231.08 Aligned_cols=122 Identities=32% Similarity=0.462 Sum_probs=116.3
Q ss_pred CcCCCCCCccceeEEEEeCCeeeEEEEEeeCCeEEEEEeecCCcceEEEEeeCCC--CCCCCceeeEeecCCCCcHHHHH
Q 033223 2 SVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDAD--ISVHPTFSVSVIFGKRDEPMLVA 79 (124)
Q Consensus 2 ~~~~~~fPv~skq~~~~I~Gv~Tevv~~~FsD~ilV~VTQ~gK~Gt~~~v~~~~~--~~~~p~~t~~~LLG~~de~l~~~ 79 (124)
...+.|||++.++.+++.||+||||+|++|+||||++|||+|||||+|++++|+. ..++|.|++++++|.+|||++++
T Consensus 2 ~~~dtp~~I~~rk~s~~~~GvpTeIV~~~f~~hil~ViTQ~Gkmgti~~~~~~~~~s~v~~P~f~vsV~~g~~Dep~~~~ 81 (125)
T KOG4828|consen 2 HTADTPRQIGFRKFSADVNGVPTEIVFHCFAKHILLVITQLGKMGTIYNVHFDVKKSEVDNPEFHVSVPIGMLDEPETRS 81 (125)
T ss_pred CccCCCceeeeeEEEEEecCCcceEEEEEecceEEEEEEeccccceeEEeeeccccccccCCeEEEEEeecccCCHHHHH
Confidence 3456799999999999999999999999999999999999999999999999855 45999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeeCCCCHHHHHHHHHHHHHccc
Q 033223 80 CARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRL 123 (124)
Q Consensus 80 ~Arqi~~~i~~~~~~r~lll~lgLkd~s~e~~~~i~~~i~~~~v 123 (124)
+|++|++++++..++|+++||+||||+|.|++|++.+++++|++
T Consensus 82 ~a~~LV~~~s~~~~~~~~vl~lglKd~s~e~Lkal~~v~~e~~~ 125 (125)
T KOG4828|consen 82 AAQFLVNRTSLHKCPTEFVLGLGLKDISGENLKALAKVLEETLF 125 (125)
T ss_pred HHHHHHHHhhcccCCcceEEEEeeccCcchhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999985
No 2
>PF10178 DUF2372: Uncharacterised conserved protein (DUF2372); InterPro: IPR018788 Proteasome assembly chaperone 3 (PSMG3) promotes assembly of the 20S proteasome []. It may cooperate with PSMG1-PSMG2 heterodimers to orchestrate the correct assembly of proteasomes.; PDB: 2Z5E_A.
Probab=100.00 E-value=1.6e-32 Score=189.53 Aligned_cols=86 Identities=58% Similarity=0.943 Sum_probs=66.7
Q ss_pred EEEeecCCcceEEEEeeC----CCCCCCCceeeEeecCCCCcHHHHHHHHHHHHHhhcCCCCCcEEEEEeeCCCCHHHHH
Q 033223 37 VIATQIGTMGTILHARKD----ADISVHPTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLK 112 (124)
Q Consensus 37 V~VTQ~gK~Gt~~~v~~~----~~~~~~p~~t~~~LLG~~de~l~~~~Arqi~~~i~~~~~~r~lll~lgLkd~s~e~~~ 112 (124)
|+|||+||||||+++++| ++..++|+|++++|||+ |||++++|||||+++|++++++||+++||||||+|+|+||
T Consensus 1 vvvTQ~gK~gtlv~v~~d~~~~~~~~~~p~f~v~vllG~-dep~l~v~Ar~L~~~i~~~~~~r~lllalgLkd~s~e~lk 79 (90)
T PF10178_consen 1 VVVTQIGKMGTLVHVRPDSRKDDGVSDNPTFTVKVLLGK-DEPLLHVYARQLIEFISQEGSNRPLLLALGLKDHSPETLK 79 (90)
T ss_dssp EEEECTT---EEEEEEE-SS-BT--TCS--EEEEEEES----HHHHHHHHHHHHHHHHHTTT-EEEEEEE-SS--HHHHH
T ss_pred CEEEecCccceEEEEecccccCCCccCCCcceEEEEecC-CcHHHHHHHHHHHHHHhccCCCCcEEEEEeccCCCHHHHH
Confidence 689999999999999876 33478999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccc
Q 033223 113 GIVSAVTENRL 123 (124)
Q Consensus 113 ~i~~~i~~~~v 123 (124)
+|+++|++|||
T Consensus 80 ~i~~~i~~~~~ 90 (90)
T PF10178_consen 80 AIVEVIRENKV 90 (90)
T ss_dssp HHHHHHHHT--
T ss_pred HHHHHHHHhcC
Confidence 99999999997
No 3
>PF10448 chaperone_DMP: 20S proteasome chaperone; InterPro: IPR018854 This entry represents the fungal 20S proteasome chaperones 3 and 4 (also known as DMP1 and DMP2), which function in early 20S proteasome assembly. The structures of these chaperones have been solved, and they closely resemble that of the mammalian proteasome assembling chaperone PAC3, although there is little sequence similarity between them []. ; PDB: 2Z5C_E 2Z5B_B.
Probab=97.60 E-value=0.00063 Score=50.36 Aligned_cols=83 Identities=14% Similarity=0.214 Sum_probs=62.0
Q ss_pred CeeeEEEEE--eeCCeEEEEEeecCCcceEEEEeeCCC----------------CCCCCceeeEeecCCCCcHHHHHHHH
Q 033223 21 RNKTDIIIC--SYDDHFLVIATQIGTMGTILHARKDAD----------------ISVHPTFSVSVIFGKRDEPMLVACAR 82 (124)
Q Consensus 21 Gv~Tevv~~--~FsD~ilV~VTQ~gK~Gt~~~v~~~~~----------------~~~~p~~t~~~LLG~~de~l~~~~Ar 82 (124)
|...|+.++ .|+||+.+.|.=+|.+.+-+.++.+.. ......+.+.+++|..++.-..+.|+
T Consensus 20 ~~~~e~~i~~~~~~nKi~I~I~ing~~d~t~e~~~~~~~~~~y~y~i~~~~~~~~~~~~~~~~v~llg~~~D~k~~iv~~ 99 (144)
T PF10448_consen 20 GIDYELTIHAIHFSNKIPISIRINGEMDTTFEVPSSGLSLINYVYAIPLEDEFSRDRLSDYVPVVLLGDSNDMKIDIVAR 99 (144)
T ss_dssp -EEEEEEEECCESSSSCEEEEEECCB--EEEEEEEE---EEEEEEEEESHHHHHHHH---EEEEEEES-TTHCCHHHHHH
T ss_pred CCCeEEEEEecccCCcceEEEEEeccccccccCccccchheeeeeeccccccccccccCcceEEEEecCCcchhhhhHHH
Confidence 677777776 999999999999999999999965311 11346788899999988888899999
Q ss_pred HHHHHhhcCCCCCcE-EEEEeeC
Q 033223 83 QLIEHISSSGTSQPL-VLSLGLK 104 (124)
Q Consensus 83 qi~~~i~~~~~~r~l-ll~lgLk 104 (124)
|||+.+... -.+|. +++++-|
T Consensus 100 qia~L~~kk-~~~p~~yvsissk 121 (144)
T PF10448_consen 100 QIAKLLVKK-YNPPCLYVSISSK 121 (144)
T ss_dssp HHHHHHHCC-CTS-EEEEEEECG
T ss_pred HHHHHHHHh-cCCCceEEEEecc
Confidence 999999866 66676 9999988
No 4
>PF08816 Ivy: Inhibitor of vertebrate lysozyme (Ivy); InterPro: IPR014453 C-type lysozyme enzymes, such as hen egg white lysozyme (HEWL), provide anti-bacterial activity by cleaving peptidoglycan in Gram-positive bacterial cell walls. In humans, C-type lysozyme is found in all secretions, including tears and saliva. Certain Gram-positive bacteria can produce proteins with anti-lysozyme activity known as Inhibitor of Vertebrate Lysozyme (IVY), which act as virulence factors [, ]. IVY proteins have a 3-layer alpha(2)/beta(5)/alpha(2) topology, and contain a protruding 5-residue loop that is essential for their inhibitory effect [].; GO: 0043086 negative regulation of catalytic activity, 0042597 periplasmic space; PDB: 1GPQ_A 1XS0_A 1UUZ_B.
Probab=81.99 E-value=13 Score=26.71 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=46.2
Q ss_pred eEEEEeCCeeeEEEEE-----eeCCeEEEEEeecCC--cceEEEEeeCCCCCCCCc-eeeEeecCCCCcHHHHHHHHH
Q 033223 14 KLSVDLKRNKTDIIIC-----SYDDHFLVIATQIGT--MGTILHARKDADISVHPT-FSVSVIFGKRDEPMLVACARQ 83 (124)
Q Consensus 14 q~~~~I~Gv~Tevv~~-----~FsD~ilV~VTQ~gK--~Gt~~~v~~~~~~~~~p~-~t~~~LLG~~de~l~~~~Arq 83 (124)
-.+++++|.+-.+... +.++++.|+.+..+| -|-+++++-..+...+|+ +..-.-||+.|+.+..+.=.|
T Consensus 35 ~~~V~~~G~~Y~v~~~CkpHdC~~~~l~vlfs~d~~~a~gl~v~v~d~~~a~~~ps~~a~~~wlG~pd~~~~a~L~~q 112 (118)
T PF08816_consen 35 MEAVTIDGKPYLVGSACKPHDCANNRLYVLFSPDKKQAYGLLVEVPDTPSADDSPSKYATYRWLGKPDDAMQAALMGQ 112 (118)
T ss_dssp EEEEEETTEEEEEEEEE-TT-TTTEEEEEEEETTTTEEEEEEEE--S-TCCCCTCCCCEEEEEESSSCHHHHHHHHCH
T ss_pred CeeEEECCEEEEEeccccccCCCcCeEEEEECCCCCceEEEEEecCCCcccccCcchhheeeecCCCCHHHHHHHHHH
Confidence 4568899998888766 678999999999988 676778863323333333 334447999888765544433
No 5
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=53.58 E-value=56 Score=21.56 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=42.4
Q ss_pred CCceeeEeecCCCCcHHHHHHHHHHHHHhhcCCCCCcEEEEEeeCCCCHHHHHH
Q 033223 60 HPTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKG 113 (124)
Q Consensus 60 ~p~~t~~~LLG~~de~l~~~~Arqi~~~i~~~~~~r~lll~lgLkd~s~e~~~~ 113 (124)
.|+.+++.+=|.+++..-+..|..|.+.+...-...+=.+++.+.+.+++...+
T Consensus 1 MP~I~I~~~~g~~s~EqK~~La~~iT~a~~~~lg~~~e~v~V~I~ev~~~~W~~ 54 (76)
T PRK01271 1 MPHIDIKCFPRELDEEQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQA 54 (76)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEcCHHHhhH
Confidence 377888766676798889999999999988765667777888888887776554
No 6
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=48.66 E-value=50 Score=23.82 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=33.5
Q ss_pred eecCCCCcHHHHHHHHHHHHHhhcCCCCCcEEEEEeeCCCCHHHHHH-HHHHHHHc
Q 033223 67 VIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKG-IVSAVTEN 121 (124)
Q Consensus 67 ~LLG~~de~l~~~~Arqi~~~i~~~~~~r~lll~lgLkd~s~e~~~~-i~~~i~~~ 121 (124)
.|+-. |.+.++.+|+-|.+.+..++.+-.+..--+|+..+++.|+. +.++++.+
T Consensus 26 ~Ll~S-DT~~G~~~a~il~~~l~~~g~~v~~~~i~~l~~~~~~~F~~Gl~~Lv~~~ 80 (136)
T PF09651_consen 26 VLLHS-DTPDGRLCAEILKEYLEEKGINVEVVEIEGLQTEDPEKFREGLRNLVRWV 80 (136)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHHHHTT-EEEEEE---E----HHHHHHHHHHHHHHT
T ss_pred EEEeC-CCHHHHHHHHHHHHHHHHcCCeEEEEEeeeecccchHHHHHHHHHHHHHH
Confidence 35555 88999999999999999876554455556788888886654 66666544
No 7
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=45.84 E-value=40 Score=24.58 Aligned_cols=32 Identities=25% Similarity=0.538 Sum_probs=22.0
Q ss_pred ecCCCCcHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 033223 68 IFGKRDEPMLVACARQLIEHISSSGTSQPLVLSL 101 (124)
Q Consensus 68 LLG~~de~l~~~~Arqi~~~i~~~~~~r~lll~l 101 (124)
|+|+ +-..+...+.|..++.+..++||||+++
T Consensus 27 l~GQ--hla~~~v~~ai~~~l~~~~p~KpLVlSf 58 (127)
T PF06309_consen 27 LFGQ--HLAVEVVVNAIKGHLANPNPRKPLVLSF 58 (127)
T ss_pred ccCc--HHHHHHHHHHHHHHHcCCCCCCCEEEEe
Confidence 4565 2233566667777777777999999886
No 8
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=35.76 E-value=1.5e+02 Score=20.69 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCcEEEEEeeCCCCHHHHHHHHHHHHHcc
Q 033223 74 EPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENR 122 (124)
Q Consensus 74 e~l~~~~Arqi~~~i~~~~~~r~lll~lgLkd~s~e~~~~i~~~i~~~~ 122 (124)
......+|..+++.+...+.++.+++|-=-...|++..+++++.+..+-
T Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G 68 (137)
T PF02878_consen 20 PEFAARLAQAFASYLKEKGNGSRVVVGRDTRPSSPMLAKALAAGLRANG 68 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSEEEEEE-SSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcccCCCCeEEEEEcccCCHHHHHHHHHHHHhhcc
Confidence 4455677777777777666677888887777888888888888887763
No 9
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism]
Probab=30.41 E-value=1.4e+02 Score=24.94 Aligned_cols=48 Identities=27% Similarity=0.332 Sum_probs=35.8
Q ss_pred cHHH-HHHHHHHHHHhhcCCCCCcEEEEEeeC-CCCHHHHHHHHHHHHHc
Q 033223 74 EPML-VACARQLIEHISSSGTSQPLVLSLGLK-DHSAETLKGIVSAVTEN 121 (124)
Q Consensus 74 e~l~-~~~Arqi~~~i~~~~~~r~lll~lgLk-d~s~e~~~~i~~~i~~~ 121 (124)
+.++ ...|.++.-....-+.++-++++++|- |.|.+-++++.+-+.+|
T Consensus 60 ~d~G~Ka~a~NlSDlAAMGa~P~~~~lsl~lP~~~d~~~~~~~~~Gi~e~ 109 (317)
T COG0611 60 EDLGWKALAVNLSDLAAMGARPKAFLLSLGLPPDLDEEWLEALADGIFEA 109 (317)
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhheeeeeCCCCCCHHHHHHHHHHHHHH
Confidence 3343 445555555555667889999999999 89999999888877765
No 10
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription]
Probab=29.94 E-value=23 Score=31.67 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=51.7
Q ss_pred eeeEEEEEeeCCeEEEEEeecCC----cceEEEEe----eC-CCCCCCCceeeEeecCCCCcHHHHHHHHHHHHHhh---
Q 033223 22 NKTDIIICSYDDHFLVIATQIGT----MGTILHAR----KD-ADISVHPTFSVSVIFGKRDEPMLVACARQLIEHIS--- 89 (124)
Q Consensus 22 v~Tevv~~~FsD~ilV~VTQ~gK----~Gt~~~v~----~~-~~~~~~p~~t~~~LLG~~de~l~~~~Arqi~~~i~--- 89 (124)
..|...+..|||+.-|.|.++|+ +--.+++. |. +..+=-|.|..+.++|.+++... .-|.+|+..++
T Consensus 123 e~t~hlliDfS~~Lqv~Vy~LG~~~l~l~~~L~i~en~~plvDpsL~i~Rfa~~L~~g~~~~~Vv-~~a~~L~~rMkrdw 201 (521)
T KOG1598|consen 123 EKTDHLLIDFSSYLQVSVYDLGSNFLEVTDSLSIGENVSPLVDPSLYIVRFSCRLLFGDKTEDVA-KTATRLAQRMKRDW 201 (521)
T ss_pred hCCceEEEEeccceEEehhhhhHHHHHHHHHhccccccccccCcceeeechhHhhhcCCchHHHH-HHHHHHHHHHHHHH
Confidence 35889999999999999999995 22222222 11 11223566777888999886655 56667776665
Q ss_pred cCCCCCcE-EEEEee
Q 033223 90 SSGTSQPL-VLSLGL 103 (124)
Q Consensus 90 ~~~~~r~l-ll~lgL 103 (124)
...++||= ++|-+|
T Consensus 202 m~tGRRPsglcGAaL 216 (521)
T KOG1598|consen 202 MQTGRRPSGLCGAAL 216 (521)
T ss_pred HHhCCCccchhHHHH
Confidence 23466764 444333
No 11
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=28.40 E-value=99 Score=22.94 Aligned_cols=32 Identities=34% Similarity=0.546 Sum_probs=28.1
Q ss_pred CCCCceeeEeecCCCCcHHHHHHHHHHHHHhh
Q 033223 58 SVHPTFSVSVIFGKRDEPMLVACARQLIEHIS 89 (124)
Q Consensus 58 ~~~p~~t~~~LLG~~de~l~~~~Arqi~~~i~ 89 (124)
.....++.++.||+-+++-++-.||+|-+...
T Consensus 81 ~~~~~~~l~iyFG~~~~~~~~~lAr~lFe~F~ 112 (153)
T PF14401_consen 81 IKSERFELSIYFGQTPDPRLERLARQLFERFP 112 (153)
T ss_pred cCCceEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 35677999999999999999999999998875
No 12
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=27.21 E-value=1.8e+02 Score=26.00 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=44.9
Q ss_pred ecCCCCcHHHHHHHHHHHHHhhcCCCCCcEEEEEeeCCCCHHHHHHHHHHHHHccc
Q 033223 68 IFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRL 123 (124)
Q Consensus 68 LLG~~de~l~~~~Arqi~~~i~~~~~~r~lll~lgLkd~s~e~~~~i~~~i~~~~v 123 (124)
+-+.-+|.-...+++.|++.+...+...||++|-==.-.|.+.+..++++.-.|.|
T Consensus 28 ~~~~fne~~i~a~~Qai~d~~~~~~~~~~L~vG~D~~~~se~a~~~~lev~aANgv 83 (524)
T COG0033 28 LVFTFNENHILAFIQAIADYRAEGGIGGPLVVGGDTHALSEPAIQSALEVLAANGV 83 (524)
T ss_pred ccCccCHHHHHHHHHHHHHHHhccCCCCceEECCCcccccHHHHHHHHHHHHhcCc
Confidence 33443566778899999999988888999999876666799999999999877754
No 13
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=26.42 E-value=1.4e+02 Score=23.34 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=25.5
Q ss_pred CCceeeEeecCC--CCcH-HHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 033223 60 HPTFSVSVIFGK--RDEP-MLVACARQLIEHISSSGTSQPLVLSLG 102 (124)
Q Consensus 60 ~p~~t~~~LLG~--~de~-l~~~~Arqi~~~i~~~~~~r~lll~lg 102 (124)
...+=|+.+||| .-.| ......++||..+...-...++++|++
T Consensus 16 R~fLfVSkVLGKHiPv~P~~~~~~~~~La~~~~~~~~~~~lvIGfA 61 (191)
T PF15609_consen 16 RAFLFVSKVLGKHIPVRPSVMRDAGRLLAAQVPEALPGPVLVIGFA 61 (191)
T ss_pred ceeEEEecccCcccCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEh
Confidence 445678999999 1122 223444555555554435677888876
No 14
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=24.51 E-value=51 Score=18.97 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=8.6
Q ss_pred eEEEEEeecCCcce
Q 033223 34 HFLVIATQIGTMGT 47 (124)
Q Consensus 34 ~ilV~VTQ~gK~Gt 47 (124)
|||+++|-.+++|.
T Consensus 2 kiLiV~Ts~~~~~~ 15 (38)
T PF13587_consen 2 KILIVVTSHDKLGD 15 (38)
T ss_dssp EEEEEE---SEECT
T ss_pred eEEEEEcCcccccC
Confidence 78999988887763
No 15
>PRK13938 phosphoheptose isomerase; Provisional
Probab=24.40 E-value=1.8e+02 Score=22.21 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCCcEEEEEeeCCCCHHHHHHH
Q 033223 73 DEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGI 114 (124)
Q Consensus 73 de~l~~~~Arqi~~~i~~~~~~r~lll~lgLkd~s~e~~~~i 114 (124)
|+...++|++|++..+ .+..++++++..-.+.+...++
T Consensus 96 d~~~~~~~~~~~~~~~----~~~DllI~iS~SG~t~~vi~a~ 133 (196)
T PRK13938 96 DYDYDTVFARALEGSA----RPGDTLFAISTSGNSMSVLRAA 133 (196)
T ss_pred cccHHHHHHHHHHhcC----CCCCEEEEEcCCCCCHHHHHHH
Confidence 5566678899988554 4678999999998888865544
No 16
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=22.66 E-value=2.6e+02 Score=21.68 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=33.7
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCCcEEEEEeeCCCCHHHHHHHHHHHHHcccC
Q 033223 73 DEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124 (124)
Q Consensus 73 de~l~~~~Arqi~~~i~~~~~~r~lll~lgLkd~s~e~~~~i~~~i~~~~vW 124 (124)
.+.+.+..|+.|++.|.++ ....++++=-......|+.+.+...+...|
T Consensus 9 ~~e~~~~~a~~i~~~i~~~---~~~~l~lsgG~tp~~~y~~L~~~~~~~~~w 57 (239)
T PRK12358 9 YEEMSRVAAHHLLGYMSKT---KRVNLAITAGSTPKGMYEYLITLVKGKAWY 57 (239)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCeEEEECCCCCHHHHHHHHHHHHhcCCCH
Confidence 4778889999999999854 345666555555666777777765554444
No 17
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=22.34 E-value=55 Score=24.83 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=18.6
Q ss_pred CCCcEEEEEeeCCCCHHHHHHHHHH
Q 033223 93 TSQPLVLSLGLKDHSAETLKGIVSA 117 (124)
Q Consensus 93 ~~r~lll~lgLkd~s~e~~~~i~~~ 117 (124)
++.--++|.|-.+.+.|.|++.+.-
T Consensus 28 p~~~~Iig~~R~~~~~~~f~~~v~~ 52 (183)
T PF00479_consen 28 PEDFRIIGVARSDLSDEEFREKVRE 52 (183)
T ss_dssp -SSEEEEEEESS--SHHCCHHHHHH
T ss_pred CCCcEEEEecCCcCCHHHHHHHHHH
Confidence 4567999999999999999887664
No 18
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=21.23 E-value=44 Score=23.22 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=25.2
Q ss_pred CCCcEEEEEeeCCCCHHHHHHHHHHHHHccc
Q 033223 93 TSQPLVLSLGLKDHSAETLKGIVSAVTENRL 123 (124)
Q Consensus 93 ~~r~lll~lgLkd~s~e~~~~i~~~i~~~~v 123 (124)
+-|-+++.-.|++.++.+|+-+|+-..+|++
T Consensus 55 GvkcVvVd~~L~~~~P~af~fvm~FA~dN~L 85 (92)
T PF12112_consen 55 GVKCVVVDERLRDIEPMAFDFVMNFAKDNDL 85 (92)
T ss_dssp TB--EEEETHHHHH-HHHHHHHHHHHHHHTE
T ss_pred CEEEEEEccHhhhcChHHHHHHHHHHHHCCC
Confidence 5688999999999999999999999988864
No 19
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=20.44 E-value=2.6e+02 Score=22.84 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=34.6
Q ss_pred eecCCCCcHHHHHHHHHHHHHhhcCCCCCcEEEEEe--eC-CCCHHHHHHHHHHHHHc
Q 033223 67 VIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLG--LK-DHSAETLKGIVSAVTEN 121 (124)
Q Consensus 67 ~LLG~~de~l~~~~Arqi~~~i~~~~~~r~lll~lg--Lk-d~s~e~~~~i~~~i~~~ 121 (124)
.|+|. .......++++++.. .++..+++.| +- +.+.|.++++++.+++.
T Consensus 293 ll~gt--~e~i~~~~~~~i~~~----~~~gfIl~~Gc~i~~~tp~eNi~a~v~a~~~y 344 (346)
T PRK00115 293 VLLAP--PEAIEEEVRAILDGG----GGPGHIFNLGHGILPETPPENVKALVEAVHEL 344 (346)
T ss_pred HhcCC--HHHHHHHHHHHHHHh----CCCCeeeecCCcCCCCcCHHHHHHHHHHHHHh
Confidence 44554 344667888888776 2355777554 44 78999999999999874
No 20
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.23 E-value=1.4e+02 Score=25.22 Aligned_cols=43 Identities=16% Similarity=0.377 Sum_probs=28.6
Q ss_pred CCeEEEE---------EeecCCcceEEEEeeCCCCCCCCc-eeeEeecCCCCc
Q 033223 32 DDHFLVI---------ATQIGTMGTILHARKDADISVHPT-FSVSVIFGKRDE 74 (124)
Q Consensus 32 sD~ilV~---------VTQ~gK~Gt~~~v~~~~~~~~~p~-~t~~~LLG~~de 74 (124)
+.|.||+ =+|.|+++.+...+.++...++|. +.=+.+.|-||+
T Consensus 291 dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDd 343 (354)
T KOG4649|consen 291 DGKVMILMTSKSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDD 343 (354)
T ss_pred CCcEEEEEecccccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccC
Confidence 4566777 578899999998876544334443 445566677775
Done!