Query 033223
Match_columns 124
No_of_seqs 100 out of 131
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 18:44:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z5e_A Proteasome assembling c 100.0 4E-51 1.4E-55 294.7 17.4 120 4-124 1-122 (122)
2 2z5b_B DMP2, uncharacterized p 97.5 0.0035 1.2E-07 47.0 12.4 82 23-104 26-148 (179)
3 2z5b_A Protein YPL144W, DMP1; 58.0 51 0.0017 23.9 12.9 97 22-120 22-147 (151)
4 1uuz_A IVY, inhibitor of verte 42.9 87 0.003 22.2 7.6 71 14-84 43-122 (137)
5 3mlq_E Transcription-repair co 38.6 46 0.0016 20.6 4.1 35 15-49 23-59 (71)
6 2lez_A Secreted effector prote 32.9 83 0.0028 22.6 5.1 42 4-45 53-98 (145)
7 1xkm_A Distinctin chain A; por 27.1 31 0.001 17.6 1.4 16 108-123 6-21 (26)
8 3ghf_A Septum site-determining 22.5 1.2E+02 0.004 20.4 4.2 59 61-122 13-74 (120)
9 2i9o_A MHB8A peptide; beta-hai 21.2 60 0.0021 17.7 2.0 16 74-89 20-35 (37)
10 2i9n_A MHB4A peptide; beta-hai 20.8 60 0.002 17.3 1.8 13 77-89 19-31 (33)
11 2kxh_B Peptide of FAR upstream 20.3 52 0.0018 17.7 1.5 12 80-91 16-27 (31)
No 1
>2z5e_A Proteasome assembling chaperone 3; beta sandwich, homodimer; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-51 Score=294.68 Aligned_cols=120 Identities=25% Similarity=0.500 Sum_probs=116.8
Q ss_pred CCCCCCccceeEEEEeCCeeeEEEEEeeCCeEEEEEeecCCcceEEEEeeCC--CCCCCCceeeEeecCCCCcHHHHHHH
Q 033223 4 LEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDA--DISVHPTFSVSVIFGKRDEPMLVACA 81 (124)
Q Consensus 4 ~~~~fPv~skq~~~~I~Gv~Tevv~~~FsD~ilV~VTQ~gK~Gt~~~v~~~~--~~~~~p~~t~~~LLG~~de~l~~~~A 81 (124)
||.+||+++||++++|||+|||++++.|||||||+|||+||||+|+|+++|+ +..++|+|++++|||+ |||++++||
T Consensus 1 ~~~~~pv~~kq~s~~I~Gv~Tevv~~~FsD~ilV~VTQ~Gk~Gt~~~v~~~~~~~~~~~p~~~v~~LLG~-de~l~~~~A 79 (122)
T 2z5e_A 1 MEDTPLVISKQKTEVVCGVPTQVVCTAFSSHILVVVTQFGKMGTLVSLEPSSVASDVSKPVLTTKVLLGQ-DEPLIHVFA 79 (122)
T ss_dssp CCSCCSSCEEEEEEEETTEEEEEEEEECSSEEEEEEESTTCCCEEEEEEECSSCCSSSSCCEEEEEEESC-CCHHHHHHH
T ss_pred CCCCCCcceeEEEEEECCeeeEEEEEecCCEEEEEEEeCCeeeEEEEEeccccCCCCCCCcceeEEeecC-ChHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999986 5678999999999999 999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEeeCCCCHHHHHHHHHHHHHcccC
Q 033223 82 RQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124 (124)
Q Consensus 82 rqi~~~i~~~~~~r~lll~lgLkd~s~e~~~~i~~~i~~~~vW 124 (124)
|||+++|++++++|||||||||||+|+|+|++|+++|++||||
T Consensus 80 rql~~~i~~~~~~r~lvl~LgLkd~s~~~~~~i~~~i~~~~vw 122 (122)
T 2z5e_A 80 KNLVAFVSQEAGNRAVLLAVAVKDKSMEGLKALREVIRVCQVW 122 (122)
T ss_dssp HHHHHHHHHHTTSCEEEEEEECSSCCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhhccCCCCcEEEEecccccCHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999
No 2
>2z5b_B DMP2, uncharacterized protein YLR021W; proteasome, chaperone; 1.96A {Saccharomyces cerevisiae} PDB: 2z5c_B
Probab=97.46 E-value=0.0035 Score=47.04 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=66.9
Q ss_pred eeEEEEEeeCCeEEEEEeecCCcceEEEEeeCCC--------------C---C------------CCCceeeEeecCCCC
Q 033223 23 KTDIIICSYDDHFLVIATQIGTMGTILHARKDAD--------------I---S------------VHPTFSVSVIFGKRD 73 (124)
Q Consensus 23 ~Tevv~~~FsD~ilV~VTQ~gK~Gt~~~v~~~~~--------------~---~------------~~p~~t~~~LLG~~d 73 (124)
+=++....|+|||++-|.=+|-|-+=|.+.+.+. . . ....|++.++||...
T Consensus 26 El~~~a~hf~NkiiLqIr~NGemDtTyEV~skgl~~~~~in~pla~~~~n~g~d~d~d~~e~v~D~ls~y~vv~~lGds~ 105 (179)
T 2z5b_B 26 ELYVQATHFNNTILLQIRLNGEMDSTYEVSSKGLNPILDINVPLAGNLGNTGGDYDDEEEEFVRDHLSDYQVVTKLGDSA 105 (179)
T ss_dssp EEEEEEEECSSCEEEEEEETTBCCEEEEEEECCC--------------------CCCSHHHHHHHHCCCEEEEEEESCTT
T ss_pred eEEEEEEeecCeEEEEEEEcceeeeeEEeccCcCCccccccchhhhcccccCccccccccccccccccccceEEEecCCC
Confidence 6778888999999999999999999999964311 0 0 124577999999988
Q ss_pred cHHHHHHHHHHHHHhhcC------------CCCCcEEEEEeeC
Q 033223 74 EPMLVACARQLIEHISSS------------GTSQPLVLSLGLK 104 (124)
Q Consensus 74 e~l~~~~Arqi~~~i~~~------------~~~r~lll~lgLk 104 (124)
+.=..+.|.|||+.+... .++|+++++||=|
T Consensus 106 dmKlpVVctQIaeLy~~~ilp~~~~~~~~~~~~k~liiSlsSK 148 (179)
T 2z5b_B 106 DPKVPVVCVQIAELYRRVILPEVSGTMAQDNMQFSLLISMSSK 148 (179)
T ss_dssp CTTHHHHHHHHHHHHHHTTSCC----------CCEEEEEECGG
T ss_pred cccccChHHHHHHHHHHhhccccccccccccCCcceEEEeehh
Confidence 998999999999999844 6899999999987
No 3
>2z5b_A Protein YPL144W, DMP1; proteasome, chaperone; 1.96A {Saccharomyces cerevisiae} PDB: 2z5c_A
Probab=58.02 E-value=51 Score=23.89 Aligned_cols=97 Identities=14% Similarity=0.080 Sum_probs=60.7
Q ss_pred eeeEEEEEe-eCCe-----EEEEEeecCC--------cceEEEEeeCCCC----C-CCCceee-EeecCCCCcHHHHHHH
Q 033223 22 NKTDIIICS-YDDH-----FLVIATQIGT--------MGTILHARKDADI----S-VHPTFSV-SVIFGKRDEPMLVACA 81 (124)
Q Consensus 22 v~Tevv~~~-FsD~-----ilV~VTQ~gK--------~Gt~~~v~~~~~~----~-~~p~~t~-~~LLG~~de~l~~~~A 81 (124)
-.++|.++. -.|+ |.|.|.+..- ||..+-+=|+-.. + +.|.=.+ ++|+-..+ +-.+-||
T Consensus 22 ~~~~v~~t~p~~d~~~K~pisi~v~~~~~es~~s~~~LgsfVYAiP~r~~~~~~~~~~~~~visT~L~~t~~-~~~~D~a 100 (151)
T 2z5b_A 22 PTLDVIATLPADDRSKKIPISLVVGFKQEASLNSSSSLSCYYYAIPLMRDRHINLKSGGSNVVGIPLLDTKD-DRIRDMA 100 (151)
T ss_dssp CCEEEEEEEESSCSSSSSCEEEEEEECCC-----CCEEEEEEEEEESCC----------CCEEEEEEECCSC-HHHHHHH
T ss_pred CCeEEEEecchhhccCCCceEEEEeccCCCCCCCcccceeEEEEcCCccccccccccCCCCceEEEeeccCC-ccHHHHH
Confidence 337788773 3342 6777764432 7887666554221 1 2222223 34554434 4456899
Q ss_pred HHHHHHhhcCCCCCcEEEEEeeCCC---------CHHHHHHHHHHHHH
Q 033223 82 RQLIEHISSSGTSQPLVLSLGLKDH---------SAETLKGIVSAVTE 120 (124)
Q Consensus 82 rqi~~~i~~~~~~r~lll~lgLkd~---------s~e~~~~i~~~i~~ 120 (124)
+++|..+..+ -+||.-++++.+-. ..|.|+.++++|.+
T Consensus 101 ~rlAkiLarR-~~~P~YVg~S~~~s~~g~m~veeeme~lkk~Vd~v~~ 147 (151)
T 2z5b_A 101 RHMATIISER-FNRPCYVTWSSLPSEDPSMLVANHLYILKKCLDLLKT 147 (151)
T ss_dssp HHHHHHHHHH-HTSCEEEEEEECTTCCTHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCeEEEeeccccccccchHHHHHHHHHHHHHHHHH
Confidence 9999999866 78999999998833 35788888888764
No 4
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=42.92 E-value=87 Score=22.17 Aligned_cols=71 Identities=13% Similarity=0.088 Sum_probs=43.2
Q ss_pred eEEEEeCCeeeEEEEE-----eeCCeEEEEEeecCC-cceEEEEeeCC--CCCCCCcee-eEeecCCCCcHHHHHHHHHH
Q 033223 14 KLSVDLKRNKTDIIIC-----SYDDHFLVIATQIGT-MGTILHARKDA--DISVHPTFS-VSVIFGKRDEPMLVACARQL 84 (124)
Q Consensus 14 q~~~~I~Gv~Tevv~~-----~FsD~ilV~VTQ~gK-~Gt~~~v~~~~--~~~~~p~~t-~~~LLG~~de~l~~~~Arqi 84 (124)
-.+++++|.+--|... +.++++.|+.+...+ +-.++...++. +-...|+-. .-..||+.|+.+-.+.=+|+
T Consensus 43 ~~~V~~~G~~Ylvg~~CkpHDC~~~~l~Vlfs~dk~~a~Gl~v~v~d~~~~a~~~Ps~~a~~~WLG~Pdd~~q~lL~~ql 122 (137)
T 1uuz_A 43 STSLSLEGQPYVLANSCKPHDCGNNRLLVAFRGDKSAAYGLQVSLPDEPAEVMQTPSKYATYRWYGEPSRQVRELLMKQL 122 (137)
T ss_dssp CEEEEETTEEEEEEEEECTTCTTTEEEEEEEETTSSCEEEEEEECCSCTTTTTTCGGGTCEEEEESCCCHHHHHHHHHHH
T ss_pred CeeEEECCEEEEEEcccCCCCCccCeEEEEECCCcCeEEEEEEecCCCccccccCcchhheeEeeCCCCHHHHHHHHHHH
Confidence 4568999998888766 678888888888755 33333333331 222344433 33479997776554444443
No 5
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=38.59 E-value=46 Score=20.60 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=24.5
Q ss_pred EEEEeCCeeeEEEEEeeCC--eEEEEEeecCCcceEE
Q 033223 15 LSVDLKRNKTDIIICSYDD--HFLVIATQIGTMGTIL 49 (124)
Q Consensus 15 ~~~~I~Gv~Tevv~~~FsD--~ilV~VTQ~gK~Gt~~ 49 (124)
...+++|.+.|.....|+| +++|=+.|..++--.+
T Consensus 23 ~~~~v~g~~~ey~~l~y~~~~~l~VPv~~~~~i~ry~ 59 (71)
T 3mlq_E 23 ETREVLGVKRDYLVLRYKGEGKLYLPVEQLPLLKRHP 59 (71)
T ss_dssp EEEEETTEEEEEEEEEETTTEEEEEESSSCC------
T ss_pred EEEEeCCeeEEEEEEEECCCCEEEEEhhhhcceeeec
Confidence 4568899999999999986 7888888887655443
No 6
>2lez_A Secreted effector protein PIPB2; structural genomics, northeast structural genomics consortiu bacterial effector, virulence factor; NMR {Salmonella enterica subsp}
Probab=32.86 E-value=83 Score=22.59 Aligned_cols=42 Identities=7% Similarity=0.127 Sum_probs=35.8
Q ss_pred CCC-CCCccceeEEEEeCCeeeEEEEE---eeCCeEEEEEeecCCc
Q 033223 4 LEQ-NFPVVQKKLSVDLKRNKTDIIIC---SYDDHFLVIATQIGTM 45 (124)
Q Consensus 4 ~~~-~fPv~skq~~~~I~Gv~Tevv~~---~FsD~ilV~VTQ~gK~ 45 (124)
+++ .||.+.+-.--.|||-.+.+... .+++.+-|-|+++|+-
T Consensus 53 ~~d~~~~~pe~i~l~dinGc~V~Fs~p~~~~~~g~VtVEV~k~g~t 98 (145)
T 2lez_A 53 MPDRGAPLPENIILDDMDGCRVEFNLPGENNEAGQVIVRVSKGDHS 98 (145)
T ss_dssp SSSSSSCCCSEEEEEEETTEEEEEECCCTTCSSCEEEEEEEETTEE
T ss_pred ccCCCCCCcceEEEeccCCEEEEecCCCccccCCcEEEEEcCCCce
Confidence 344 79999999988999999999665 8888888899999986
No 7
>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=27.06 E-value=31 Score=17.57 Aligned_cols=16 Identities=0% Similarity=0.302 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHccc
Q 033223 108 AETLKGIVSAVTENRL 123 (124)
Q Consensus 108 ~e~~~~i~~~i~~~~v 123 (124)
+..|-++++.+++||+
T Consensus 6 ppgftaliktlrkcki 21 (26)
T 1xkm_A 6 PPGFTALIKTLRKCKI 21 (26)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHhcee
Confidence 3579999999999986
No 8
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=22.52 E-value=1.2e+02 Score=20.42 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=37.2
Q ss_pred CceeeEeecCCCCcHHHHHHHHHHHHHhhcCC---CCCcEEEEEeeCCCCHHHHHHHHHHHHHcc
Q 033223 61 PTFSVSVIFGKRDEPMLVACARQLIEHISSSG---TSQPLVLSLGLKDHSAETLKGIVSAVTENR 122 (124)
Q Consensus 61 p~~t~~~LLG~~de~l~~~~Arqi~~~i~~~~---~~r~lll~lgLkd~s~e~~~~i~~~i~~~~ 122 (124)
..|++.+|.=. +.+ .....++|.+.+.+.. .+.|++|-++-.+ +...|.++++++++..
T Consensus 13 ~~~~l~vl~l~-~~d-~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~-~~~dl~~L~~~l~~~g 74 (120)
T 3ghf_A 13 SSFTLSVVHLH-EAE-PEVIRQALEDKIAQAPAFLKHAPVVINVSGLE-SPVNWPELHKIVTSTG 74 (120)
T ss_dssp CCCCCEEEEEE-SCC-HHHHHHHHHHHHHHSHHHHTTCEEEEEEEECC-SSCCHHHHHHHHHTTT
T ss_pred CeeeEEEEEeC-CCC-HHHHHHHHHHHHHhChHhhCCCcEEEEccccC-ChHHHHHHHHHHHHcC
Confidence 34555555432 111 3356677777777654 6899999987544 3355888888887654
No 9
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=21.23 E-value=60 Score=17.70 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHHhh
Q 033223 74 EPMLVACARQLIEHIS 89 (124)
Q Consensus 74 e~l~~~~Arqi~~~i~ 89 (124)
-...++||++|++.+.
T Consensus 20 gsaaeayakriaeama 35 (37)
T 2i9o_A 20 GSAAEAYAKRIAEAMA 35 (37)
T ss_dssp CSSHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHh
Confidence 3456799999999875
No 10
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=20.85 E-value=60 Score=17.31 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhh
Q 033223 77 LVACARQLIEHIS 89 (124)
Q Consensus 77 ~~~~Arqi~~~i~ 89 (124)
.++||++|++.+.
T Consensus 19 aeayakriaeama 31 (33)
T 2i9n_A 19 AEAYAKRIAEAMA 31 (33)
T ss_dssp THHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 4689999999875
No 11
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=20.28 E-value=52 Score=17.68 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=9.7
Q ss_pred HHHHHHHHhhcC
Q 033223 80 CARQLIEHISSS 91 (124)
Q Consensus 80 ~Arqi~~~i~~~ 91 (124)
-|||||..|...
T Consensus 16 RaRQIaAKig~~ 27 (31)
T 2kxh_B 16 RARQIAAKIGGD 27 (31)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHhcCC
Confidence 489999999854
Done!