Query 033223
Match_columns 124
No_of_seqs 100 out of 131
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 18:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033223.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033223hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fsfa_ c.124.1.1 (A:) Glucosa 55.4 17 0.0012 25.5 6.7 50 73-122 9-60 (266)
2 d1p22a2 b.69.4.1 (A:253-545) F 44.6 13 0.00098 23.4 4.2 36 11-46 43-78 (293)
3 d1ozha1 c.31.1.3 (A:188-366) C 42.0 25 0.0018 23.0 5.4 45 69-121 2-47 (179)
4 d3c9ua1 d.79.4.1 (A:1-137) Thi 39.4 28 0.002 22.3 5.2 46 75-120 59-106 (137)
5 d1j93a_ c.1.22.1 (A:) Uroporph 38.6 13 0.00097 27.0 3.7 51 66-122 289-342 (343)
6 d1r3sa_ c.1.22.1 (A:) Uroporph 36.7 33 0.0024 24.9 5.8 50 66-121 298-350 (356)
7 d2eyqa1 b.34.18.1 (A:466-545) 34.2 14 0.00099 22.3 2.6 32 15-46 32-65 (80)
8 d1zvpa2 d.58.18.9 (A:68-131) H 33.2 9.6 0.0007 22.3 1.7 19 20-38 30-48 (64)
9 d1zpda1 c.31.1.3 (A:188-362) P 32.7 43 0.0031 21.7 5.4 48 72-122 3-50 (175)
10 d1yqea1 c.56.7.1 (A:1-278) Hyp 30.7 28 0.002 25.5 4.4 40 69-108 153-197 (278)
11 d1nexb2 b.69.4.1 (B:370-744) C 29.5 14 0.001 24.1 2.3 30 17-46 6-36 (355)
12 d1zhva2 d.58.18.8 (A:62-127) H 29.2 12 0.00089 21.7 1.7 22 20-41 29-50 (66)
13 d1wd5a_ c.61.1.1 (A:) Putative 27.6 23 0.0016 23.9 3.2 23 80-102 9-31 (208)
14 d1ne7a_ c.124.1.1 (A:) Glucosa 21.3 63 0.0046 22.8 4.8 50 73-122 9-60 (281)
No 1
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Escherichia coli [TaxId: 562]}
Probab=55.36 E-value=17 Score=25.52 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHHHHHhhc--CCCCCcEEEEEeeCCCCHHHHHHHHHHHHHcc
Q 033223 73 DEPMLVACARQLIEHISS--SGTSQPLVLSLGLKDHSAETLKGIVSAVTENR 122 (124)
Q Consensus 73 de~l~~~~Arqi~~~i~~--~~~~r~lll~lgLkd~s~e~~~~i~~~i~~~~ 122 (124)
.+.+.+..|+.|++.|.. ...+|++.+|++=-..-...|+.+.+...+.+
T Consensus 9 ~~e~~~~aA~~i~~~I~~~~~~~~~~f~ialsGGsTP~~~y~~L~~~~~~~~ 60 (266)
T d1fsfa_ 9 AEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQ 60 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSSTTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCEEEEECCCccHHHHHHHHHHHHhccC
Confidence 478899999999999974 23578888888877777788888888776543
No 2
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.62 E-value=13 Score=23.45 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=29.5
Q ss_pred cceeEEEEeCCeeeEEEEEeeCCeEEEEEeecCCcc
Q 033223 11 VQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMG 46 (124)
Q Consensus 11 ~skq~~~~I~Gv~Tevv~~~FsD~ilV~VTQ~gK~G 46 (124)
.+.+....+.|+.-.|.+..|.++.+++.+.+|.+-
T Consensus 43 ~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~ 78 (293)
T d1p22a2 43 NTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVR 78 (293)
T ss_dssp SSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred CCCcEEEEEecCCCCEeeeecccceeeccccccccc
Confidence 456667788898888999999999999999888653
No 3
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}
Probab=42.05 E-value=25 Score=23.03 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=24.6
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcCCCCCcEEEE-EeeCCCCHHHHHHHHHHHHHc
Q 033223 69 FGKRDEPMLVACARQLIEHISSSGTSQPLVLS-LGLKDHSAETLKGIVSAVTEN 121 (124)
Q Consensus 69 LG~~de~l~~~~Arqi~~~i~~~~~~r~lll~-lgLkd~s~e~~~~i~~~i~~~ 121 (124)
||..|+.-. ..+++.|.. .+||+++. -|. ...+...++.+++.+.
T Consensus 2 ~g~a~~~~i----~~~~~~L~~--AkrPvii~G~g~--~~~~a~~~l~~lae~~ 47 (179)
T d1ozha1 2 MGAAPDDAI----DQVAKLIAQ--AKNPIFLLGLMA--SQPENSKALRRLLETS 47 (179)
T ss_dssp ECCSCHHHH----HHHHHHHHH--CSSEEEEECGGG--GSGGGHHHHHHHHHHH
T ss_pred CCCCCHHHH----HHHHHHHHh--CCCEEEEEchhh--ChhhHHHHHHHHHHhc
Confidence 566666433 344444442 57887764 343 3445566666666544
No 4
>d3c9ua1 d.79.4.1 (A:1-137) Thiamine monophosphate kinase (ThiL) N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=39.43 E-value=28 Score=22.26 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=28.3
Q ss_pred HHHHH-HHHHHHHHhhcCCCCCcEEEEEeeC-CCCHHHHHHHHHHHHH
Q 033223 75 PMLVA-CARQLIEHISSSGTSQPLVLSLGLK-DHSAETLKGIVSAVTE 120 (124)
Q Consensus 75 ~l~~~-~Arqi~~~i~~~~~~r~lll~lgLk-d~s~e~~~~i~~~i~~ 120 (124)
.++.. ++..+.-....-+.++-++++|+|. +.+.+.++++++-+.+
T Consensus 59 ~iG~~a~~~~~SDI~amGa~P~~~~~sl~lp~~~~~~~~~~~~~Gi~~ 106 (137)
T d3c9ua1 59 AVGWKAISVNVSDVIANGGLPKWALISLNLPEDLEVSYVERFYIGVKR 106 (137)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEEEEECTTSBHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhcCCccceeEeeeecCcCcchhHhHHHHhhhhh
Confidence 34433 3334433333444567788999995 5688878887766654
No 5
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]}
Probab=38.64 E-value=13 Score=27.02 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=35.3
Q ss_pred EeecCCCCcHHHHHHHHHHHHHhhcCCCCCcEEEEEeeC---CCCHHHHHHHHHHHHHcc
Q 033223 66 SVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLK---DHSAETLKGIVSAVTENR 122 (124)
Q Consensus 66 ~~LLG~~de~l~~~~Arqi~~~i~~~~~~r~lll~lgLk---d~s~e~~~~i~~~i~~~~ 122 (124)
..|+|. .|. ..-.++++.+... +++.++++|=- +...|.++++++.+++-|
T Consensus 289 ~~L~~~-~e~-i~~~~~~~l~~~~----~~~~I~~lGhgi~~~Tp~eNv~a~v~~vr~~~ 342 (343)
T d1j93a_ 289 GVLFGS-KEF-ITNRINDTVKKAG----KGKHILNLGHGIKVGTPEENFAHFFEIAKGLR 342 (343)
T ss_dssp GGGGSC-HHH-HHHHHHHHHHHHC----SSSEEBCBSSCCCTTCCHHHHHHHHHHHHTCC
T ss_pred HHHcCC-HHH-HHHHHHHHHHhcC----CCCcEEECCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 356765 333 4456677766654 35678665533 789999999999999865
No 6
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.71 E-value=33 Score=24.93 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=36.5
Q ss_pred EeecCCCCcHHHHHHHHHHHHHhhcCCCCCcEEEEEee--C-CCCHHHHHHHHHHHHHc
Q 033223 66 SVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGL--K-DHSAETLKGIVSAVTEN 121 (124)
Q Consensus 66 ~~LLG~~de~l~~~~Arqi~~~i~~~~~~r~lll~lgL--k-d~s~e~~~~i~~~i~~~ 121 (124)
..|+|. . +.....++++.+... +++.++++|= - +.+.|.++++++.|++.
T Consensus 298 ~~L~~~-~-e~i~~~~~~~l~~~~----~~~~I~nlGhGI~p~tp~env~a~v~~vr~~ 350 (356)
T d1r3sa_ 298 CALYAS-E-EEIGQLVKQMLDDFG----PHRYIANLGHGLYPDMDPEHVGAFVDAVHKH 350 (356)
T ss_dssp GGGGSC-H-HHHHHHHHHHHHHHC----SSSEEEEESSCCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCC-H-HHHHHHHHHHHHHhC----CCCeEEeCCCCcCCCCCHHHHHHHHHHHHHh
Confidence 456765 3 345566777777664 4668888873 3 88999999999999874
No 7
>d2eyqa1 b.34.18.1 (A:466-545) Transcription-repair coupling factor, RRCF, middle domain {Escherichia coli [TaxId: 562]}
Probab=34.18 E-value=14 Score=22.31 Aligned_cols=32 Identities=6% Similarity=0.239 Sum_probs=26.1
Q ss_pred EEEEeCCeeeEEEEEeeCC--eEEEEEeecCCcc
Q 033223 15 LSVDLKRNKTDIIICSYDD--HFLVIATQIGTMG 46 (124)
Q Consensus 15 ~~~~I~Gv~Tevv~~~FsD--~ilV~VTQ~gK~G 46 (124)
....++|...|.+...|+| +++|=++|..++.
T Consensus 32 ~~~~~~g~~~e~l~leY~~~d~LyVPv~~~~~i~ 65 (80)
T d2eyqa1 32 TTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 65 (80)
T ss_dssp EEEESSSCEEEEEEEECGGGCEEEEEGGGGGGEE
T ss_pred EEeecCCCCCceEEEEEcCCCeEEEeHHHhccee
Confidence 3467899999999999986 6888888887653
No 8
>d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=33.24 E-value=9.6 Score=22.33 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.5
Q ss_pred CCeeeEEEEEeeCCeEEEE
Q 033223 20 KRNKTDIIICSYDDHFLVI 38 (124)
Q Consensus 20 ~Gv~Tevv~~~FsD~ilV~ 38 (124)
+|++-.++..-|.|||||=
T Consensus 30 ~~Is~nvis~~~hDhifVp 48 (64)
T d1zvpa2 30 HGISANVIAGYYHDHIFVQ 48 (64)
T ss_dssp TTCCCEEEECSSCEEEEEE
T ss_pred CCCCeEEEEeeccceEEEc
Confidence 5788889999999999984
No 9
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}
Probab=32.70 E-value=43 Score=21.69 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=29.1
Q ss_pred CCcHHHHHHHHHHHHHhhcCCCCCcEEEEEeeCCCCHHHHHHHHHHHHHcc
Q 033223 72 RDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENR 122 (124)
Q Consensus 72 ~de~l~~~~Arqi~~~i~~~~~~r~lll~lgLkd~s~e~~~~i~~~i~~~~ 122 (124)
.|+..++....++++.|.. .+||++++=+--..+ +..+++.+++.+++
T Consensus 3 sd~~~l~~~v~~~~~~l~~--AkrPvIi~G~g~~~~-~a~~~l~~lae~~~ 50 (175)
T d1zpda1 3 SDEASLNAAVDETLKFIAN--RDKVAVLVGSKLRAA-GAEEAAVKFTDALG 50 (175)
T ss_dssp CCHHHHHHHHHHHHHHHTT--CSCEEEEECTTTTTT-TCHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHHHc--CCCEEEEECcCcccc-chHHHHHHHHHhhc
Confidence 4677788889999999974 477865543333221 23455555555443
No 10
>d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=30.71 E-value=28 Score=25.51 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=30.5
Q ss_pred cCC-----CCcHHHHHHHHHHHHHhhcCCCCCcEEEEEeeCCCCH
Q 033223 69 FGK-----RDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSA 108 (124)
Q Consensus 69 LG~-----~de~l~~~~Arqi~~~i~~~~~~r~lll~lgLkd~s~ 108 (124)
+|. +|+...++.|+-|.+.+.....+.+.++|+|=--+.+
T Consensus 153 IGSte~~W~d~~a~~~~A~~i~~~~~~~~~~~~~~vg~GGgHYap 197 (278)
T d1yqea1 153 IGSTEEEWKDREAAEVVAEAMLDAIRAEKMDWNVAVGVGGTHYAP 197 (278)
T ss_dssp EEESHHHHTCHHHHHHHHHHHHHHHHCCCCCCEEEEEECSCTTCH
T ss_pred ecCCHHHhCCcHHHHHHHHHHHhhccccCCCCcEEEEeCCCccch
Confidence 477 5677888999999888887666777888888655543
No 11
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.49 E-value=14 Score=24.12 Aligned_cols=30 Identities=10% Similarity=0.331 Sum_probs=23.8
Q ss_pred EEeCCeeeEE-EEEeeCCeEEEEEeecCCcc
Q 033223 17 VDLKRNKTDI-IICSYDDHFLVIATQIGTMG 46 (124)
Q Consensus 17 ~~I~Gv~Tev-v~~~FsD~ilV~VTQ~gK~G 46 (124)
.++.|+.+.| .|..|+++.+++.+.+|++=
T Consensus 6 ~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~ 36 (355)
T d1nexb2 6 TTLRGHMTSVITCLQFEDNYVITGADDKMIR 36 (355)
T ss_dssp EEEECCSSSCEEEEEEETTEEEEEETTTEEE
T ss_pred EEECCcCCCcEEEEEECCCEEEEEeCCCeEE
Confidence 3577888875 57899999999999888743
No 12
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=29.22 E-value=12 Score=21.74 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=17.5
Q ss_pred CCeeeEEEEEeeCCeEEEEEee
Q 033223 20 KRNKTDIIICSYDDHFLVIATQ 41 (124)
Q Consensus 20 ~Gv~Tevv~~~FsD~ilV~VTQ 41 (124)
+|++.-++.+-|.|+|||=-.+
T Consensus 29 a~Is~~~vSty~~D~ilVp~~~ 50 (66)
T d1zhva2 29 NGIGIFVVSTFDGDHLLVRSND 50 (66)
T ss_dssp TTCCCEEEECSSCEEEEEEGGG
T ss_pred CCCCeEEEEeeeccEEEEEHHH
Confidence 5788888999999999985443
No 13
>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426 (TTHA1462) {Thermus thermophilus [TaxId: 274]}
Probab=27.57 E-value=23 Score=23.87 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=19.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEe
Q 033223 80 CARQLIEHISSSGTSQPLVLSLG 102 (124)
Q Consensus 80 ~Arqi~~~i~~~~~~r~lll~lg 102 (124)
.+++||+.+...+.+.++++++-
T Consensus 9 Ag~~LA~~l~~~~~~~~vVl~ip 31 (208)
T d1wd5a_ 9 AGALLAEALAPLGLEAPVVLGLP 31 (208)
T ss_dssp HHHHHHHHHGGGCCCSCEEEECT
T ss_pred HHHHHHHHHHHcCCCCCEEEeCC
Confidence 47888999987778889999885
No 14
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.25 E-value=63 Score=22.82 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHHHHhhcC--CCCCcEEEEEeeCCCCHHHHHHHHHHHHHcc
Q 033223 73 DEPMLVACARQLIEHISSS--GTSQPLVLSLGLKDHSAETLKGIVSAVTENR 122 (124)
Q Consensus 73 de~l~~~~Arqi~~~i~~~--~~~r~lll~lgLkd~s~e~~~~i~~~i~~~~ 122 (124)
-+.+.+..|..|++.|.+. ..+|++.+||+=-..-...|+.+.+...+.+
T Consensus 9 ~~e~s~~aA~~i~~~I~~~~~~~~~~~~i~lsGGsTP~~~y~~L~~~~~~~~ 60 (281)
T d1ne7a_ 9 YSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGD 60 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCEEEEECCCcCHHHHHHHHHHHHhccC
Confidence 3667788888898888542 3577888887655444556777777665533
Done!