BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033227
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FMP4|PM14_ARATH Pre-mRNA branch site p14-like protein OS=Arabidopsis thaliana
GN=At5g12190 PE=2 SV=1
Length = 124
Score = 226 bits (575), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 107/124 (86%), Positives = 112/124 (90%)
Query: 1 MATIPLRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTA 60
M TI LRK N RLPPEVNRVLYVRNLPFNI+SEEMYDIFGKYGAIRQIRIG K T+GTA
Sbjct: 1 MTTISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTA 60
Query: 61 FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKMSKKFDQKKKDDELAKMQEKYGVS 120
FVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ KMSKKFDQKK +DE+ K+QEKYGVS
Sbjct: 61 FVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGVS 120
Query: 121 TKDK 124
TKDK
Sbjct: 121 TKDK 124
>sp|P59708|PM14_MOUSE Pre-mRNA branch site protein p14 OS=Mus musculus GN=Sf3b14 PE=2
SV=1
Length = 125
Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 77/121 (63%), Positives = 100/121 (82%)
Query: 1 MATIPLRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTA 60
MA ++ N RLPPEVNR+LY+RNLP+ I++EEMYDIFGKYG IRQIR+G++ +TRGTA
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA 60
Query: 61 FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKMSKKFDQKKKDDELAKMQEKYGVS 120
+VVYEDI+DAK A DHLSGFNV NRYL+VLYY + +K D KKK+++L ++EKYG++
Sbjct: 61 YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN 120
Query: 121 T 121
T
Sbjct: 121 T 121
>sp|Q9Y3B4|PM14_HUMAN Pre-mRNA branch site protein p14 OS=Homo sapiens GN=SF3B14 PE=1
SV=1
Length = 125
Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 77/121 (63%), Positives = 100/121 (82%)
Query: 1 MATIPLRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTA 60
MA ++ N RLPPEVNR+LY+RNLP+ I++EEMYDIFGKYG IRQIR+G++ +TRGTA
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA 60
Query: 61 FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKMSKKFDQKKKDDELAKMQEKYGVS 120
+VVYEDI+DAK A DHLSGFNV NRYL+VLYY + +K D KKK+++L ++EKYG++
Sbjct: 61 YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN 120
Query: 121 T 121
T
Sbjct: 121 T 121
>sp|Q9VRV7|PM14_DROME Pre-mRNA branch site p14-like protein OS=Drosophila melanogaster
GN=CG13298 PE=2 SV=1
Length = 121
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 76/117 (64%), Positives = 96/117 (82%)
Query: 7 RKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYED 66
++ + RLPPEVNR+LYVRNLP+ I+S+EMYDIFGK+GAIRQIR+G++ +TRGTAFVVYED
Sbjct: 3 KRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYED 62
Query: 67 IYDAKTAVDHLSGFNVANRYLIVLYYQQTKMSKKFDQKKKDDELAKMQEKYGVSTKD 123
I+DAK A DHLSGFNV NRYL+VLYYQ K K+ D KK +EL ++ KY + T +
Sbjct: 63 IFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKYNLKTPE 119
>sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans
GN=C50D2.5 PE=3 SV=2
Length = 138
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 72/120 (60%), Positives = 99/120 (82%)
Query: 1 MATIPLRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTA 60
MA + A+LPPEVNR+LY++NLP+ I++EEMY+IFGK+GA+RQIR+G++ +TRGTA
Sbjct: 1 MAMANRQNRGAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTA 60
Query: 61 FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKMSKKFDQKKKDDELAKMQEKYGVS 120
FVVYEDI+DAKTA +HLSG+NV+NRYL+VLYYQ TK K+ D +K +L ++E+YG+
Sbjct: 61 FVVYEDIFDAKTACEHLSGYNVSNRYLVVLYYQATKAWKRMDTEKARTKLEDIKERYGIG 120
>sp|O59670|PM14_SCHPO Pre-mRNA branch site p14-like protein OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A3.07c PE=3 SV=2
Length = 115
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 83/114 (72%), Gaps = 8/114 (7%)
Query: 13 LPP-----EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDI 67
+PP EVN +L+++NL F I++EEMYD+FG+YG +RQIR+G++ TRGTAFVVYE++
Sbjct: 1 MPPSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENV 60
Query: 68 YDAKTAVDHLSGFNVANRYLIVLYY--QQTKMSKKFDQKKKDDELAKMQEKYGV 119
DA+ A + LSG+N +RYL+V YY ++ K+ + D + L ++++KYGV
Sbjct: 61 QDARRACEKLSGYNFMDRYLVVHYYNPERAKVDGQ-DLAARYAALEQVKQKYGV 113
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 10 NARLPPEVNRVLYVRNLPFNISS----EEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYE 65
+A +PP N+ LYV NL IS E++ +F KYG I +I S RG AF+V++
Sbjct: 5 SADIPP--NQTLYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQAFIVFK 62
Query: 66 DIYDAKTAVDHLSGFNVANRYLIVLYYQQ-----TKMSKKFDQKKKDDE 109
DI A A+ ++GFN +R + + Y + +K+ + +KK++ E
Sbjct: 63 DITSASNALREMNGFNFLDRPMKIQYCKSKSDAVSKLDGTYMEKKRERE 111
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTA 73
PP N+ L+V NLP S + +F ++ +++ + SK +G AF+ +ED + A
Sbjct: 164 PP--NKTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMVESK--KGIAFIEFEDEIKSGFA 219
Query: 74 VDHLSGFNVANRYLIVLYY 92
+ +L F V +V+ +
Sbjct: 220 MTNLQHFKVTPEKPMVVSF 238
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 25 NLPFNISSEEMYDIFGKYGAIRQIRIGSSKD--TRGTAFVVYEDIYDAKTAVDHLSGFNV 82
NLPF + +++ ++FG +G ++ +R+ D RG AFV + + +A+TA+ L G ++
Sbjct: 723 NLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQLEGVHL 782
Query: 83 ANRYLIVLYYQQ 94
R L++ Y +Q
Sbjct: 783 LGRRLVMQYAEQ 794
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQI------RIGSSKDTRGTAFVVYEDIYDAKTAV 74
L++RN+ + S E+ +F +YGA+ ++ R G SK F+ ED A ++
Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371
Query: 75 D 75
D
Sbjct: 372 D 372
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGT-AFVVYEDIYDAKTAVDH 76
++++ V+N PF + +E+ ++F YG ++++ + + GT A + + D A+ A
Sbjct: 492 DKIILVKNFPFGTTIDEIGELFSAYGQLKRMLMPPA----GTIAIIEFRDAPSARAAFSK 547
Query: 77 LS 78
L+
Sbjct: 548 LA 549
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 23 VRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
V+NLPF + ++++++F +G ++ +R+ K RG AFV + +A+ A+D L G
Sbjct: 716 VKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMDQLQGV 775
Query: 81 NVANRYLIVLYYQQ 94
++ R L++ Y +Q
Sbjct: 776 HLLGRRLVMQYAEQ 789
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGT-AFVVYEDIYDAKTAVDH 76
+R++ V+N P + EE+ ++F +G I ++ + S GT A + Y D+ A+ A
Sbjct: 487 DRIILVKNFPHGTTREELAELFLPFGKIERLLMPPS----GTIAIIQYRDVPAARGAFTK 542
Query: 77 LSGFNVANRYLIVLYYQQTKMSKKFDQKKKDDEL 110
LS R+ + Y + F ++ + DEL
Sbjct: 543 LS----YKRFKEAILYLEKGPKDCFSREPRGDEL 572
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIG---SSKDTRGTAFVVYEDIYDAKTAVDHL 77
L++RN+ ++ + E+ +F YG + ++ + + ++G A+V+++D A A L
Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362
Query: 78 SGFNVANRYLIVL 90
R L +L
Sbjct: 363 DKQIFQGRLLHIL 375
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 9 GNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIY 68
G +PP N +L+++NLP +S + +F +Y ++IR+ +K G AFV YED
Sbjct: 150 GQETMPP--NNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKP--GIAFVEYEDDV 205
Query: 69 DAKTAVDHLSGFNVANRYLIVLYY 92
A A+ L GF + + +V+ +
Sbjct: 206 QASIAMQPLQGFKITPQNPMVISF 229
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD--TRGTAFVVYEDIYDAKTAVDHLS 78
+Y++N +++ E + ++FGKYG +++ + + ++G FV +E DA+ AVD ++
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 79 GFNVANRYLIVLYYQ-----QTKMSKKFDQKKKD 107
G ++ + + V Q QT++ +KF+Q K+D
Sbjct: 253 GKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQD 286
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
++++NL +I ++ +YD F +G I ++ ++ ++G FV +E A+ A+D ++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 80 FNVANRYLIVLYYQQTKMS----------------KKFDQKKKDDELAKMQEKYG 118
+ +R + V ++ K K F D+ L +M KYG
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYG 215
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR---GTAFVVYEDIYDAKTAVDHL 77
LYV +L +++ +Y+ F G I IR+ TR G A+V ++ DA+ A+D +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 78 SGFNVANRYLIVLYYQQ 94
+ + R + +++ Q+
Sbjct: 73 NFDVIKGRPVRIMWSQR 89
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRI----GSSKDTRGTAFVVYEDIYDAKTAVDH 76
LYV+NL I E + F +G I ++ G SK G FV + +A AV
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSK---GFGFVCFSSPEEATKAVTE 352
Query: 77 LSGFNVANRYLIVLYYQQ 94
++G VA + L V Q+
Sbjct: 353 MNGRIVATKPLYVALAQR 370
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLS 78
+Y++N ++ E + D+FGK+G +++ + S ++G FV +E DA+ AVD ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 79 GFNVANRYLIVLYYQ-----QTKMSKKFDQKKKD 107
G + + + V Q QT++ +KF+Q K+D
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
++++NL +I ++ +YD F +G I ++ ++ ++G FV +E A+ A++ ++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 80 FNVANRYLIVLYYQQTK 96
+ +R + V ++ K
Sbjct: 161 MLLNDRKVFVGRFKSRK 177
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRI----GSSKDTRGTAFVVYEDIYDAKTAVDH 76
LYV+NL I E + F +G I ++ G SK G FV + +A AV
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK---GFGFVCFSSPEEATKAVTE 352
Query: 77 LSGFNVANRYLIVLYYQQ 94
++G VA + L V Q+
Sbjct: 353 MNGRIVATKPLYVALAQR 370
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR---GTAFVVYEDIYDAKTAVDHL 77
LYV +L + + +Y+ F G I IR+ TR G A+V ++ DA+ A+D +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 78 SGFNVANRYLIVLYYQQ 94
+ + + + +++ Q+
Sbjct: 73 NFDVIKGKPVRIMWSQR 89
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLS 78
+Y++N ++ E + D+FGK+G +++ + S ++G FV +E DA+ AVD ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 79 GFNVANRYLIVLYYQ-----QTKMSKKFDQKKKD 107
G + + + V Q QT++ +KF+Q K+D
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
++++NL +I ++ +YD F +G I ++ ++ ++G FV +E A+ A++ ++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 80 FNVANRYLIVLYYQQTK 96
+ +R + V ++ K
Sbjct: 161 MLLNDRKVFVGRFKSRK 177
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRI----GSSKDTRGTAFVVYEDIYDAKTAVDH 76
LYV+NL I E + F +G I ++ G SK G FV + +A AV
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK---GFGFVCFSSPEEATKAVTE 352
Query: 77 LSGFNVANRYLIVLYYQQ 94
++G VA + L V Q+
Sbjct: 353 MNGRIVATKPLYVALAQR 370
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR---GTAFVVYEDIYDAKTAVDHL 77
LYV +L +++ +Y+ F G I IR+ TR G A+V ++ DA+ A+D +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 78 SGFNVANRYLIVLYYQQ 94
+ + + + +++ Q+
Sbjct: 73 NFDVIKGKPVRIMWSQR 89
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLS 78
+Y++N ++ E + D+FGK+G +++ + S ++G FV +E DA+ AVD ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 79 GFNVANRYLIVLYYQ-----QTKMSKKFDQKKKD 107
G + + + V Q QT++ +KF+Q K+D
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
++++NL +I ++ +YD F +G I ++ ++ ++G FV +E A+ A++ ++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 80 FNVANRYLIVLYYQQTK 96
+ +R + V ++ K
Sbjct: 161 MLLNDRKVFVGRFKSRK 177
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRI----GSSKDTRGTAFVVYEDIYDAKTAVDH 76
LYV+NL I E + F +G I ++ G SK G FV + +A AV
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK---GFGFVCFSSPEEATKAVTE 352
Query: 77 LSGFNVANRYLIVLYYQQ 94
++G VA + L V Q+
Sbjct: 353 MNGRIVATKPLYVALAQR 370
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR---GTAFVVYEDIYDAKTAVDHL 77
LYV +L +++ +Y+ F G I IR+ TR G A+V ++ DA+ A+D +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 78 SGFNVANRYLIVLYYQQ 94
+ + + + +++ Q+
Sbjct: 73 NFDVIKGKPVRIMWSQR 89
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLS 78
+ V+NLPF + ++++++F +G ++ +R+ K RG AFV + +A+ A+D L
Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQ 813
Query: 79 GFNVANRYLIVLYYQQ 94
G ++ R L++ + +Q
Sbjct: 814 GVHLLGRRLVMEFVEQ 829
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGT-AFVVYEDIYDAKTAVDH 76
+RV+ V+N P+ + EE+ ++F +G ++++ + S GT A + + D+ A+ A
Sbjct: 515 DRVILVKNFPYGTTREEIAELFLPFGKLQRLLLPPS----GTIAILQFRDVPAARAAFSK 570
Query: 77 LSGFNVANRYLIVLYYQQTKMSKKFDQKKKDDELAKMQ 114
+S R+ + Y + S F + + DEL + +
Sbjct: 571 IS----YKRFKDGIIYLEKGPSDCFTRDAQGDELVESE 604
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIG---SSKDTRGTAFVVYEDIYDAKTAVDHL 77
L++RN+ + + ++ +F YG + ++ I + ++G A+V++++ +A TA L
Sbjct: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
Query: 78 SGFNVANRYLIVLYYQQTKMSKKFDQ 103
R L +L K S K D+
Sbjct: 392 DKQIFQGRLLHILPA-DAKKSHKLDE 416
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1
Length = 828
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 55/100 (55%), Gaps = 9/100 (9%)
Query: 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAV 74
++ + ++NLPF + +++ +FG +G+++ +R+ + ++RG AF Y +A+ A+
Sbjct: 701 IDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAM 760
Query: 75 DHLSGFNVANRYLIVLYYQQTKMSKKFDQKKKDDELAKMQ 114
L G ++ R L++ Y Q D ++E+ +MQ
Sbjct: 761 SALQGTHLLGRRLVLQYAQA-------DASNAEEEIERMQ 793
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 60/110 (54%), Gaps = 12/110 (10%)
Query: 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGT-AFVVYEDIYDAKTAVDH 76
+RV+ V+N PF + E+ ++F +YG + ++ + + GT A V+++ I DA+ A
Sbjct: 484 DRVILVKNFPFGTTQPEIAEMFSEYGDLYKVMMPPA----GTIAIVIFKHIPDARAAFAK 539
Query: 77 LS--GFNVANRYLIVLYYQQTKMSKKFDQKKKDDELAKMQEKYGVSTKDK 124
L+ F + +LY ++ + ++K + DE+ +++ V+ +DK
Sbjct: 540 LAFRRFKTS-----ILYLEKGPKNLLPNEKMESDEVEHVKQDKIVTIEDK 584
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDT---RGTAFVVYEDIYDAKTAVDHL 77
L++RNL + E+ +F +YG + ++ + + T +G A V +ED +A A +
Sbjct: 303 LFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQ 362
Query: 78 SGFNVANRYLIVLYYQQTKMSKKFDQKK-KDDELAKMQE 115
G R L +L + K + D+ K+ L K QE
Sbjct: 363 DGKIFQGRLLHILPGKPKKDYNRLDEHDLKNLPLKKQQE 401
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 28/132 (21%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRI--GSSKDTRGTAFVVYEDIYDAKTAVDHLS 78
+YV+NLP ++ + + D+F ++G + +++ +S +R FV +E +A+ AV H++
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 79 GFNVANRYLIVLYYQ-----QTKMSKKFDQKKKD---------------------DELAK 112
G V+ R L Q Q ++ ++F+Q K+D D+L K
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 113 MQEKYGVSTKDK 124
YGV T K
Sbjct: 313 EFSPYGVITSAK 324
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
++++NL +I ++ +YD F +G I ++ + +RG FV +E A+ A++ ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 80 FNVANRYLIVLYYQQTK 96
+ +R + V +++ +
Sbjct: 161 MLLNDRKVFVGHFKSRR 177
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS-KDTRGTAFVVYEDIYDAKTAVDHLSG 79
LYV+NL +I +++ F YG I ++ + ++G FV + +A AV ++G
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 80 FNVANRYLIVLYYQQTKMSKKFDQKKKDDELAKMQ 114
V + L V Q+ + K + L+ M+
Sbjct: 356 RIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMR 390
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR---GTAFVVYEDIYDAKTAVDHL 77
LYV +L +++ +Y+ F G I IR+ TR G A++ ++ DA+ A+D +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 78 S 78
+
Sbjct: 73 N 73
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD--TRGTAFVVYEDIYDAKTAVDHLS 78
+Y++N ++ E + + FG+YGA +++ + +RG FV +E DA+ AVD ++
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 79 GFNVANRYLIVLYYQ-----QTKMSKKFDQKKKD 107
G ++ + + V Q QT++ +KF+Q K+D
Sbjct: 253 GKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQD 286
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
++++NL +I ++ +YD F +G I ++ ++ ++G FV +E A+ A+D ++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 80 FNVANRYLIVLYYQQTK 96
+ +R + V ++ K
Sbjct: 161 MLLNDRKVFVGRFKSRK 177
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRI----GSSKDTRGTAFVVYEDIYDAKTAVDH 76
LYV+NL I E + F +G+I ++ G SK G FV + +A AV
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSK---GFGFVCFSSPEEATKAVTE 352
Query: 77 LSGFNVANRYLIVLYYQQ 94
++G VA + L V Q+
Sbjct: 353 MNGRIVATKPLYVALAQR 370
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR---GTAFVVYEDIYDAKTAVDHL 77
LYV +L +++ +Y+ F G I IR+ TR G A+V ++ DA+ A+D +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 78 SGFNVANRYLIVLYYQQ 94
+ + + + +++ Q+
Sbjct: 73 NFDVIKGKPVRIMWSQR 89
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHL 77
+R +YV NLP +I E+ D+F KYG + QI + G AFV ++D DA+ A+
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 78 SGFNVANRYLIV 89
G++ L V
Sbjct: 66 DGYDFDGHRLRV 77
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDT---RGTAFVVYEDIYDA 70
P E + L++ NL FN + ++++F K+G + +RI + +T +G +V + ++ DA
Sbjct: 262 PSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDA 321
Query: 71 KTAVDHLSGFNVANR 85
K A+D L G + NR
Sbjct: 322 KKALDALQGEYIDNR 336
>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1
SV=1
Length = 887
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLS 78
+ V+NLPF + ++++++F +G ++ +R+ K RG AFV + +A+ A+D L
Sbjct: 765 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLH 824
Query: 79 GFNVANRYLIVLYYQQ---------TKMSKKFDQKKKDDELAKMQEKYG 118
G ++ R L++ Y ++ +M+KK ++ +E+A ++ G
Sbjct: 825 GVHLLGRRLVMQYAEEDAVDAEEEIARMTKKVRKQVATNEMAALRNGGG 873
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGT-AFVVYEDIYDAKTAVDH 76
++V+ V+N PF + EE+ ++F YG + ++ + + GT A V + D A+ A
Sbjct: 531 DKVILVKNFPFGTTREELGEMFLPYGKLERLLMPPA----GTIAIVQFRDTTSARAAFTK 586
Query: 77 LS 78
LS
Sbjct: 587 LS 588
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIG---SSKDTRGTAFVVYEDIYDAKTAVDHL 77
L++RN+ + E+ +F +G + ++ + + ++G A+V+++D +A A L
Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVEL 406
Query: 78 SGFNVANRYLIVLYYQQTKMSKKFDQ 103
R L +L ++ K S + D+
Sbjct: 407 DKQIFQGRLLHILPGEEKK-SHRLDE 431
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 1 MATIPLRKGNARLPPEV---NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR 57
++ +P + PE+ N +L+V+NLP + + +F +Y +++R+ +K
Sbjct: 158 LSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKP-- 215
Query: 58 GTAFVVYEDIYDAKTAVDHLSGFNVA--NRYLI 88
G AFV Y D A A++HL GF + N+ LI
Sbjct: 216 GIAFVEYGDEGQATAAMNHLQGFKITKDNQMLI 248
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 14 PPEVNRVLYVRNLPFNISSEEMYD----IFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYD 69
PP N +Y+ NL I EE+ +F ++G I + + +G A+VV+ED+
Sbjct: 20 PP--NVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVAS 77
Query: 70 AKTAVDHLSGFNVANRYLIVLY 91
A A+ + F N+ + + Y
Sbjct: 78 ATEALKSMQDFPFHNKPMRIQY 99
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 1 MATIPLRKGNARLPPEV---NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR 57
++ +P + PE+ N +L+V+NLP + + +F +Y +++R+ +K
Sbjct: 158 LSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKP-- 215
Query: 58 GTAFVVYEDIYDAKTAVDHLSGFNVA--NRYLI 88
G AFV Y D A A++HL GF + N+ LI
Sbjct: 216 GIAFVEYGDEGQATAAMNHLQGFKITKDNQMLI 248
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 14 PPEVNRVLYVRNLPFNISSEEMYD----IFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYD 69
PP N +Y+ NL I EE+ +F ++G I + + +G A+VV+ED+
Sbjct: 20 PP--NVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVAS 77
Query: 70 AKTAVDHLSGFNVANRYLIVLY 91
A A+ + F N+ + + Y
Sbjct: 78 ATEALKSMQDFPFHNKPMRIQY 99
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLS 78
+Y++N ++ E + ++FGK+G +++ + S ++G FV +E DA+ AVD ++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 79 GFNVANRYLIVLYYQ-----QTKMSKKFDQKKKD 107
G + + + V Q QT++ +KF+Q K+D
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
++++NL +I ++ +YD F +G I ++ ++ ++G FV +E A+ A++ ++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 80 FNVANRYLIVLYYQQTK 96
+ +R + V ++ K
Sbjct: 161 MLLNDRKVFVGRFKSRK 177
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRI----GSSKDTRGTAFVVYEDIYDAKTAVDH 76
LYV+NL I E + F +G I ++ G SK G FV + +A AV
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK---GFGFVCFSSPEEATKAVTE 352
Query: 77 LSGFNVANRYLIVLYYQQ 94
++G VA + L V Q+
Sbjct: 353 MNGRIVATKPLYVALAQR 370
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR---GTAFVVYEDIYDAKTAVDHL 77
LYV +L +++ +Y+ F G I IR+ TR G A+V ++ DA+ A+D +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 78 SGFNVANRYLIVLYYQQ 94
+ + + + +++ Q+
Sbjct: 73 NFDVIKGKPVRIMWSQR 89
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLS 78
+Y++N ++ E + ++FGK+G +++ + S ++G FV +E DA+ AVD ++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 79 GFNVANRYLIVLYYQ-----QTKMSKKFDQKKKD 107
G + + + V Q QT++ +KF+Q K+D
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
++++NL +I ++ +YD F +G I ++ ++ ++G FV +E A+ A++ ++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 80 FNVANRYLIVLYYQQTK 96
+ +R + V ++ K
Sbjct: 161 MLLNDRKVFVGRFKSRK 177
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRI----GSSKDTRGTAFVVYEDIYDAKTAVDH 76
LYV+NL I E + F +G I ++ G SK G FV + +A AV
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK---GFGFVCFSSPEEATKAVTE 352
Query: 77 LSGFNVANRYLIVLYYQQ 94
++G VA + L V Q+
Sbjct: 353 MNGRIVATKPLYVALAQR 370
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR---GTAFVVYEDIYDAKTAVDHL 77
LYV +L +++ +Y+ F G I IR+ TR G A+V ++ DA+ A+D +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 78 SGFNVANRYLIVLYYQQ 94
+ + + + +++ Q+
Sbjct: 73 NFDVIKGKPVRIMWSQR 89
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 9 GNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIY 68
G +PP N +L++ NLP +S + +F +Y ++IR+ +K G AFV YED
Sbjct: 147 GQDTMPP--NNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKP--GIAFVEYEDDV 202
Query: 69 DAKTAVDHLSGFNVANRYLIVLYY 92
+ A+ L GF + + +V+ +
Sbjct: 203 QSSMAMQALQGFKITPQNPMVVSF 226
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLS 78
+Y++N ++ E + D+FGK+G +++ + S ++G FV +E DA+ AVD ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 79 GFNVANRYLIVLYYQ-----QTKMSKKFDQKKKD 107
G + + + V Q QT++ + F+Q K+D
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQD 286
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRI----GSSKDTRGTAFVVYEDIYDAKTAVDH 76
LYV+NL I E + F +G I ++ G SK G FV + +A AV
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSK---GFGFVCFSSPEEATKAVTE 352
Query: 77 LSGFNVANRYLIVLYYQQ 94
++G VA + L V Q+
Sbjct: 353 MNGRIVATKPLYVALAQR 370
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD-TRGTAFVVYEDIYDAKTAVDHLSG 79
++V+NL +I+++ +YD +G I + ++ ++G FV +E A+ A+ ++G
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 80 FNVANRYLIVLYYQQTK 96
+ R + V ++ K
Sbjct: 161 MLLNGRKVFVGQFKSRK 177
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 10 NARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGT---AFVVYED 66
N P LYV +L +++ +Y+ F G I IRI T G+ A+V ++
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 67 IYDAKTAVDHLSGFNVANRYLIVLYYQQ 94
DA+ A+D ++ + + + +++ Q+
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMWSQR 89
>sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing protein 1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MRD1 PE=3 SV=1
Length = 861
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVD 75
N + V+NLPF + ++++++F +G ++ +R+ K RG AFV + +A+ A+D
Sbjct: 737 NGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKEAENAMD 796
Query: 76 HLSGFNVANRYLIV 89
L G ++ R L++
Sbjct: 797 QLQGVHLLGRRLVM 810
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGT-AFVVYEDIYDAKTAVDH 76
+RV+ V+N PF + EE+ ++F +G + ++ + + GT A V + DI ++A
Sbjct: 511 DRVILVKNFPFGTTREELGELFVPFGKLERLLMPPA----GTIAIVQFRDIASGRSAFSK 566
Query: 77 LS 78
L+
Sbjct: 567 LA 568
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIG---SSKDTRGTAFVVYEDIYDAKTAVDHL 77
L++RN+ ++ + ++ +F YG ++++ + + +++G A+V++ +A A L
Sbjct: 327 LFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIEL 386
Query: 78 SGFNVANRYLIVLYYQQTK 96
R L +L + K
Sbjct: 387 DKQIFQGRLLHILAADEMK 405
>sp|P19018|TRA2_DROME Transformer-2 sex-determining protein OS=Drosophila melanogaster
GN=tra2 PE=1 SV=1
Length = 264
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRI---GSSKDTRGTAFVVYEDI 67
+R P+ +R + V L N S ++ ++F KYG I +I++ ++ +RG F+ +E +
Sbjct: 89 SREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKL 148
Query: 68 YDAKTAVDHLSGFNVANRYLIV 89
DA+ A D SG V R + V
Sbjct: 149 SDARAAKDSCSGIEVDGRRIRV 170
>sp|Q9LYN7|AML4_ARATH Protein MEI2-like 4 OS=Arabidopsis thaliana GN=ML4 PE=1 SV=1
Length = 907
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
L+V NL +IS+EE++ IF YG IR++R ++++ ++ + D+ AK A+ L+G
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQ--VYIEFFDVRKAKVALQGLNGL 354
Query: 81 NVANRYL 87
VA R L
Sbjct: 355 EVAGRQL 361
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDH 76
++R+L+VRN+ +I E+ +F ++G +R + ++ RG V Y DI A+ A
Sbjct: 209 LSRILFVRNVDSSIEDCELGVLFKQFGDVRALH--TAGKNRGFIMVSYYDIRAAQKAARA 266
Query: 77 LSGFNVANRYLIVLY 91
L G + R L + Y
Sbjct: 267 LHGRLLRGRKLDIRY 281
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD--TRGTAFVVYEDIYDAKTAVDHLS 78
+ ++NLPF + ++ D+F G ++ +R+ D TRG FV Y + +A++A++ L
Sbjct: 721 ILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEALK 780
Query: 79 GFNVANRYLIVLY 91
++ R+L++ +
Sbjct: 781 HTHLLGRHLVLQW 793
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDT---RGTAFVVYEDIYDAKTAVDHL 77
L++RNLPF S +E+ F +G ++Q+ I K T +G AFV + D A A
Sbjct: 316 LFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAK 375
Query: 78 SGFNVANRYLIVL 90
G R L +L
Sbjct: 376 DGSTFQGRLLHLL 388
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVV 63
P + + V+N+P+ S+EE+ +FG++G + ++ I S GT VV
Sbjct: 497 PRSDTTILVKNIPYGTSAEEVEKLFGEHGEVDKVLIPPS----GTIAVV 541
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD--TRGTAFVVYEDIYDAKTAVDHLS 78
L VR LP ++ + + F + GA+ +++ D +R FV Y +A+ A+D+
Sbjct: 4 LIVRGLPSYLTDARLREHFSQKGAVTDVKLMRRPDGTSRKFGFVGYRSEQEAQQALDYF- 62
Query: 79 GFNVANRYLIVLYYQQTKMSKKFDQKKKDDEL 110
NR I +++S + +K D+EL
Sbjct: 63 -----NRTFI----DTSRISIELAKKIGDEEL 85
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 20 VLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR---GTAFVVYED 66
+YV NLPF++++ ++Y IF KYG + ++ I KDTR G AF+++ D
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 60
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 8 KGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD--TRGTAFVVYE 65
K N P + + + ++NLPF + +E+ +F YG I+ +RI + RG FV +
Sbjct: 784 KSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFL 843
Query: 66 DIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96
+AK A++ L + R+L++ Y +Q K
Sbjct: 844 TEEEAKNAMEALGNSHFYGRHLVLQYAEQDK 874
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIG---SSKDTRGTAFVVYEDIYDAKTAVDHL 77
++VRNL ++ E++ +F K+G I +I I SK ++G AF++Y +A A++ +
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 78 SGFNVANRYLIVL 90
G R + VL
Sbjct: 423 DGKVFQGRLIHVL 435
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHL 77
N VL V+N+PF E++++F K+G + ++ + + R A + Y +AK +L
Sbjct: 552 NTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSPA---RTIALIEYIHPNEAKVGFKNL 608
Query: 78 S 78
+
Sbjct: 609 A 609
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 20 VLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR---GTAFVVYED 66
+YV NLPF++++ ++Y IF KYG + ++ I KDTR G AF+++ D
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLD 60
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 20 VLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR---GTAFVVYED 66
+YV NLPF++++ ++Y IF KYG + ++ I KDTR G AF+++ D
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 60
>sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
indica GN=OsI_11177 PE=3 SV=1
Length = 232
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 6 LRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYE 65
L K + P N +L+++NLP +S + +F +Y R++R+ +K G AFV YE
Sbjct: 145 LGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKP--GIAFVEYE 202
Query: 66 DIYDAKTAVDHLSGFNV 82
D + A+ L GF +
Sbjct: 203 DDSQSMVAMQALQGFKI 219
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 13 LPPEVNRVLYVRNLPFNISSEEM----YDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIY 68
+PP N+ +Y+RNL + EE+ Y + +YG I + + RG A+VV+ +I
Sbjct: 6 IPP--NQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEIT 63
Query: 69 DAKTAVDHLSGFNVANRYLIVLY 91
A A L F+ + + V Y
Sbjct: 64 AATNAFRGLQEFDFYGKRMRVQY 86
>sp|P38922|HRB1_YEAST Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HRB1 PE=1 SV=2
Length = 454
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIR--QIRIGSSKDTRGTAFVVYEDIYDAKTA 73
E NR++Y NLPF+ + ++YD+F G + ++R S G A V Y+++ DA
Sbjct: 373 ERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVC 432
Query: 74 VDHLSGFNVANRYLIVLYYQQ 94
++ L+ +N L + Y ++
Sbjct: 433 IERLNNYNYGGCDLDISYAKR 453
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 6 LRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD--TRGTAFVV 63
L +G R + + V+ V+NLP +++ + + DIF + G + + D + G+ V
Sbjct: 249 LDRGELRHNRKTHEVI-VKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVS 307
Query: 64 YEDIYDAKTAVDHLSGFNVANRYLIV 89
+ DI D A++ +G+++ L V
Sbjct: 308 FYDIKDLHRAIEKYNGYSIEGNVLDV 333
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 20 VLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR---GTAFVVYED 66
+YV NLPF++++ ++Y IF KYG + ++ I KDTR G AF+++ D
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 60
>sp|Q01560|NOP3_YEAST Nucleolar protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NPL3 PE=1 SV=1
Length = 414
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHL 77
N L+VR P ++ E+ +IFG +G +++++I G AFV +E+ A A++ +
Sbjct: 124 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKI-----LNGFAFVEFEEAESAAKAIEEV 178
Query: 78 SGFNVANRYLIVLY 91
G + AN+ L V+Y
Sbjct: 179 HGKSFANQPLEVVY 192
>sp|O02008|TRA2_DROVI Transformer-2 sex-determining protein OS=Drosophila virilis GN=tra2
PE=3 SV=1
Length = 272
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRI---GSSKDTRGTAFVVYEDI 67
AR P+ +R + V L N + +++ ++F K+G I +I++ + +RG F+ +E++
Sbjct: 97 ARDHPQASRCIGVFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFENL 156
Query: 68 YDAKTAVDHLSGFNVANRYLIVLY 91
DA+ A D +G V R + V Y
Sbjct: 157 GDARVAKDACTGMEVDGRRIRVDY 180
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6
OS=Caenorhabditis elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
+YV LP + +S+E+ +IF ++G IR++ + ++ G AFV Y+D+ DA+ AV L G
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWV--ARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 81 NVAN 84
+
Sbjct: 63 RICG 66
>sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
japonica GN=Os03g0298800 PE=2 SV=1
Length = 232
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 6 LRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYE 65
L K + P N +L+++NLP +S + +F +Y R++R+ +K G AFV YE
Sbjct: 145 LGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKP--GIAFVEYE 202
Query: 66 DIYDAKTAVDHLSGFNV 82
D + A+ L GF +
Sbjct: 203 DDSQSMVAMQALQGFKI 219
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 13 LPPEVNRVLYVRNLPFNISSEEM----YDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIY 68
+PP N+ +Y+RNL + EE+ Y + +YG I + + RG A+VV+ +I
Sbjct: 6 IPP--NQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFSEIT 63
Query: 69 DAKTAVDHLSGFNVANRYLIVLY 91
A A L F+ + + V Y
Sbjct: 64 AATNAFRGLQEFDFYGKRMRVQY 86
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
+YV NLP +I ++++ D+F KYGAIR I + + + AFV +ED DA+ AV G+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 81 N 81
+
Sbjct: 78 D 78
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
+YV NLP +I ++++ D+F KYGAIR I + + + AFV +ED DA+ AV G+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 81 N 81
+
Sbjct: 78 D 78
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1
PE=2 SV=3
Length = 248
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
+YV NLP +I ++++ D+F KYGAIR I + + + AFV +ED DA+ AV G+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 81 N 81
+
Sbjct: 78 D 78
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
+YV NLP +I ++++ D+F KYGAIR I + + + AFV +ED DA+ AV G+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 81 N 81
+
Sbjct: 78 D 78
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
+YV NLP +I ++++ D+F KYGAIR I + + + AFV +ED DA+ AV G+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 81 N 81
+
Sbjct: 78 D 78
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1
PE=2 SV=1
Length = 248
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
+YV NLP +I ++++ D+F KYGAIR I + + + AFV +ED DA+ AV G+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 81 N 81
+
Sbjct: 78 D 78
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
+YV NLP +I ++++ D+F KYGAIR I + + + AFV +ED DA+ AV G+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 81 N 81
+
Sbjct: 78 D 78
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
+YV NLP +I ++++ D+F KYGAIR I + + + AFV +ED DA+ AV G+
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76
Query: 81 N 81
+
Sbjct: 77 D 77
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,861,802
Number of Sequences: 539616
Number of extensions: 1520190
Number of successful extensions: 5792
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 408
Number of HSP's that attempted gapping in prelim test: 4888
Number of HSP's gapped (non-prelim): 1090
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)