Query 033227
Match_columns 124
No_of_seqs 107 out of 1545
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 11:21:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0114 Predicted RNA-binding 99.9 5.7E-23 1.2E-27 120.4 10.8 123 1-123 1-123 (124)
2 TIGR01659 sex-lethal sex-letha 99.9 7.9E-21 1.7E-25 135.3 12.7 108 14-121 103-221 (346)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4.2E-20 9.1E-25 131.9 12.8 104 17-120 2-116 (352)
4 KOG0145 RNA-binding protein EL 99.8 4.3E-19 9.4E-24 119.4 10.4 107 16-122 39-156 (360)
5 PLN03134 glycine-rich RNA-bind 99.8 2E-18 4.3E-23 109.4 11.2 82 16-97 32-116 (144)
6 KOG0144 RNA-binding protein CU 99.8 1.4E-18 3.1E-23 123.5 9.9 111 14-124 30-155 (510)
7 TIGR01645 half-pint poly-U bin 99.8 3.1E-18 6.8E-23 128.5 11.2 106 17-122 106-233 (612)
8 TIGR01628 PABP-1234 polyadenyl 99.8 5.2E-18 1.1E-22 127.8 12.5 103 20-122 2-117 (562)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 6.4E-18 1.4E-22 120.7 12.4 80 17-96 268-350 (352)
10 TIGR01648 hnRNP-R-Q heterogene 99.7 3.6E-17 7.9E-22 122.5 11.3 106 13-118 53-163 (578)
11 PF00076 RRM_1: RNA recognitio 99.7 4.1E-17 9E-22 90.9 8.7 68 21-88 1-70 (70)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 1.5E-16 3.3E-21 118.0 13.4 101 17-119 274-420 (481)
13 KOG0131 Splicing factor 3b, su 99.7 5.6E-17 1.2E-21 103.9 8.9 109 14-122 5-125 (203)
14 KOG0117 Heterogeneous nuclear 99.7 1.4E-16 3.1E-21 113.7 11.9 107 12-118 77-189 (506)
15 KOG0122 Translation initiation 99.7 8.8E-17 1.9E-21 107.2 10.1 80 16-95 187-269 (270)
16 TIGR01622 SF-CC1 splicing fact 99.7 1.5E-16 3.2E-21 117.2 12.3 104 17-121 88-214 (457)
17 KOG0148 Apoptosis-promoting RN 99.7 8.1E-17 1.7E-21 108.8 9.1 107 18-124 62-195 (321)
18 KOG0125 Ataxin 2-binding prote 99.7 9.3E-17 2E-21 110.9 9.1 82 14-95 92-174 (376)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 3.5E-16 7.5E-21 116.2 12.6 101 18-121 2-124 (481)
20 PLN03120 nucleic acid binding 99.7 2.4E-16 5.2E-21 107.1 10.3 77 18-95 4-80 (260)
21 TIGR01628 PABP-1234 polyadenyl 99.7 1.5E-15 3.3E-20 114.6 11.8 107 16-122 176-314 (562)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.7 2.6E-15 5.6E-20 112.0 12.9 79 16-94 293-374 (509)
23 KOG0121 Nuclear cap-binding pr 99.7 5.3E-16 1.2E-20 94.4 6.9 78 17-94 35-115 (153)
24 PF14259 RRM_6: RNA recognitio 99.6 3.4E-15 7.4E-20 83.5 9.2 68 21-88 1-70 (70)
25 KOG0148 Apoptosis-promoting RN 99.6 3.5E-15 7.6E-20 101.0 9.3 81 14-97 160-240 (321)
26 PLN03121 nucleic acid binding 99.6 6.1E-15 1.3E-19 99.0 10.3 77 17-94 4-80 (243)
27 KOG0109 RNA-binding protein LA 99.6 1.7E-15 3.6E-20 103.4 6.8 101 19-124 3-109 (346)
28 TIGR01645 half-pint poly-U bin 99.6 9.7E-15 2.1E-19 109.9 10.6 78 18-95 204-284 (612)
29 TIGR01659 sex-lethal sex-letha 99.6 1.1E-14 2.4E-19 104.0 10.3 80 17-96 192-276 (346)
30 PLN03213 repressor of silencin 99.6 8.8E-15 1.9E-19 106.3 9.7 81 15-96 7-89 (759)
31 smart00362 RRM_2 RNA recogniti 99.6 3.4E-14 7.4E-19 78.6 9.2 70 20-89 1-71 (72)
32 KOG0127 Nucleolar protein fibr 99.6 3.6E-14 7.9E-19 103.8 10.8 81 18-98 117-199 (678)
33 KOG4207 Predicted splicing fac 99.6 1.1E-14 2.5E-19 95.2 7.3 79 18-96 13-94 (256)
34 KOG0107 Alternative splicing f 99.6 1.7E-14 3.7E-19 92.1 7.8 80 16-97 8-87 (195)
35 KOG0149 Predicted RNA-binding 99.6 8.2E-15 1.8E-19 97.4 6.4 76 18-94 12-90 (247)
36 KOG0111 Cyclophilin-type pepti 99.6 6.7E-15 1.5E-19 97.2 5.7 85 16-100 8-95 (298)
37 KOG0130 RNA-binding protein RB 99.6 1.5E-14 3.2E-19 89.0 6.7 77 17-93 71-150 (170)
38 TIGR01622 SF-CC1 splicing fact 99.6 4.5E-14 9.8E-19 104.1 10.6 76 18-93 186-264 (457)
39 TIGR01648 hnRNP-R-Q heterogene 99.5 9.5E-14 2.1E-18 104.3 11.2 74 18-96 233-308 (578)
40 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.8E-13 3.9E-18 102.1 12.2 99 18-120 175-322 (509)
41 KOG0126 Predicted RNA-binding 99.5 1.7E-15 3.8E-20 97.2 1.0 83 15-97 32-117 (219)
42 PF13893 RRM_5: RNA recognitio 99.5 2.4E-13 5.1E-18 72.9 8.7 56 35-92 1-56 (56)
43 KOG0145 RNA-binding protein EL 99.5 3.3E-13 7.2E-18 91.3 10.1 83 13-95 273-358 (360)
44 cd00590 RRM RRM (RNA recogniti 99.5 5.9E-13 1.3E-17 74.0 9.5 72 20-91 1-74 (74)
45 KOG0144 RNA-binding protein CU 99.5 3.3E-14 7.1E-19 101.5 5.3 81 18-98 124-209 (510)
46 KOG0127 Nucleolar protein fibr 99.5 2.2E-13 4.7E-18 99.8 8.7 102 18-119 5-143 (678)
47 smart00360 RRM RNA recognition 99.5 4E-13 8.6E-18 74.0 7.9 67 23-89 1-70 (71)
48 KOG0113 U1 small nuclear ribon 99.5 5.2E-13 1.1E-17 91.5 9.9 82 17-98 100-184 (335)
49 COG0724 RNA-binding proteins ( 99.5 6.8E-13 1.5E-17 90.5 9.7 76 18-93 115-193 (306)
50 KOG0105 Alternative splicing f 99.4 2.8E-13 6E-18 87.5 6.4 78 18-95 6-83 (241)
51 KOG0108 mRNA cleavage and poly 99.4 6.5E-13 1.4E-17 96.8 9.0 79 19-97 19-100 (435)
52 KOG0124 Polypyrimidine tract-b 99.4 2.2E-13 4.8E-18 95.9 6.3 105 19-123 114-240 (544)
53 KOG0110 RNA-binding protein (R 99.4 8.1E-13 1.8E-17 99.1 8.8 104 19-122 516-642 (725)
54 KOG0117 Heterogeneous nuclear 99.4 7.8E-13 1.7E-17 94.9 8.0 75 19-98 260-334 (506)
55 KOG0123 Polyadenylate-binding 99.4 1.4E-12 3.1E-17 93.8 9.0 101 20-123 3-106 (369)
56 KOG4206 Spliceosomal protein s 99.4 1.9E-12 4E-17 85.8 8.2 81 18-98 9-93 (221)
57 KOG0146 RNA-binding protein ET 99.4 5.2E-13 1.1E-17 90.6 5.0 84 14-97 281-367 (371)
58 KOG1457 RNA binding protein (c 99.3 4.1E-11 9E-16 79.6 11.9 84 15-98 31-121 (284)
59 KOG0123 Polyadenylate-binding 99.3 1.8E-11 3.9E-16 88.1 9.6 102 19-121 77-195 (369)
60 KOG0153 Predicted RNA-binding 99.3 1.5E-11 3.3E-16 85.9 8.5 82 11-95 221-303 (377)
61 KOG0146 RNA-binding protein ET 99.3 1.5E-11 3.3E-16 83.6 8.3 96 2-97 2-103 (371)
62 smart00361 RRM_1 RNA recogniti 99.3 2E-11 4.4E-16 68.3 7.4 58 32-89 2-69 (70)
63 KOG4212 RNA-binding protein hn 99.3 2.4E-11 5.2E-16 87.4 8.8 78 18-95 44-124 (608)
64 KOG0147 Transcriptional coacti 99.3 1.7E-11 3.8E-16 89.8 6.7 75 21-95 281-358 (549)
65 KOG0415 Predicted peptidyl pro 99.2 1.7E-11 3.6E-16 86.2 6.0 80 18-97 239-321 (479)
66 KOG4208 Nucleolar RNA-binding 99.2 7.8E-11 1.7E-15 77.2 8.3 81 15-95 46-130 (214)
67 KOG0132 RNA polymerase II C-te 99.2 4.1E-11 8.9E-16 91.0 7.7 75 18-95 421-495 (894)
68 KOG1190 Polypyrimidine tract-b 99.2 3.4E-10 7.4E-15 80.9 10.8 101 18-120 297-441 (492)
69 KOG4205 RNA-binding protein mu 99.2 5.2E-11 1.1E-15 83.6 5.9 102 17-119 5-123 (311)
70 KOG4212 RNA-binding protein hn 99.2 9.4E-11 2E-15 84.4 7.1 75 16-92 534-608 (608)
71 KOG0131 Splicing factor 3b, su 99.1 1.5E-10 3.2E-15 74.7 6.0 84 15-98 93-180 (203)
72 KOG4211 Splicing factor hnRNP- 99.1 1E-09 2.3E-14 79.8 10.7 106 14-121 6-131 (510)
73 KOG0109 RNA-binding protein LA 99.1 1.4E-10 3E-15 79.7 5.6 76 17-97 77-152 (346)
74 KOG0533 RRM motif-containing p 99.1 1.7E-09 3.6E-14 73.6 8.8 85 18-102 83-169 (243)
75 KOG4661 Hsp27-ERE-TATA-binding 99.1 5.2E-10 1.1E-14 83.1 6.8 79 18-96 405-486 (940)
76 KOG0110 RNA-binding protein (R 99.0 3.2E-10 6.9E-15 85.4 5.4 82 16-97 611-695 (725)
77 PF04059 RRM_2: RNA recognitio 99.0 3.3E-09 7.1E-14 62.7 8.3 77 19-95 2-87 (97)
78 KOG4454 RNA binding protein (R 99.0 1.2E-10 2.7E-15 77.1 2.2 108 14-122 5-113 (267)
79 KOG0124 Polypyrimidine tract-b 99.0 8.9E-10 1.9E-14 78.0 6.5 75 19-93 211-288 (544)
80 KOG0151 Predicted splicing reg 99.0 2.6E-09 5.6E-14 80.9 7.9 83 13-95 169-257 (877)
81 KOG1548 Transcription elongati 98.9 8E-09 1.7E-13 72.5 8.6 83 13-95 129-221 (382)
82 KOG0106 Alternative splicing f 98.8 7.8E-09 1.7E-13 69.0 5.0 97 19-120 2-126 (216)
83 KOG0116 RasGAP SH3 binding pro 98.8 3.4E-08 7.5E-13 72.0 7.8 77 18-95 288-367 (419)
84 KOG4205 RNA-binding protein mu 98.7 4.3E-08 9.2E-13 69.1 6.6 80 18-98 97-179 (311)
85 KOG0147 Transcriptional coacti 98.7 6.8E-09 1.5E-13 76.5 2.4 103 18-121 179-306 (549)
86 KOG0226 RNA-binding proteins [ 98.6 6.9E-08 1.5E-12 65.4 5.4 81 15-95 187-270 (290)
87 KOG4660 Protein Mei2, essentia 98.6 4.2E-08 9E-13 72.6 4.5 69 18-88 75-143 (549)
88 KOG4209 Splicing factor RNPS1, 98.5 2.5E-07 5.5E-12 62.9 6.1 80 15-95 98-180 (231)
89 KOG4206 Spliceosomal protein s 98.5 2.4E-06 5.1E-11 57.1 9.0 77 15-93 143-220 (221)
90 PF11608 Limkain-b1: Limkain b 98.4 2.7E-06 5.8E-11 48.6 6.6 71 19-96 3-78 (90)
91 KOG0120 Splicing factor U2AF, 98.4 8.5E-07 1.8E-11 65.9 5.3 84 15-98 286-372 (500)
92 KOG1457 RNA binding protein (c 98.3 9.5E-07 2.1E-11 59.1 4.4 65 18-83 210-274 (284)
93 PF08777 RRM_3: RNA binding mo 98.3 5.2E-06 1.1E-10 49.9 6.5 60 18-80 1-60 (105)
94 KOG2314 Translation initiation 98.3 5.6E-06 1.2E-10 61.9 7.6 89 16-104 56-153 (698)
95 KOG4211 Splicing factor hnRNP- 98.2 8.7E-06 1.9E-10 59.9 7.8 78 17-95 102-182 (510)
96 KOG1456 Heterogeneous nuclear 98.2 9.7E-05 2.1E-09 53.1 12.2 80 16-97 285-365 (494)
97 KOG1548 Transcription elongati 98.1 5E-05 1.1E-09 53.8 9.7 85 16-101 263-358 (382)
98 COG5175 MOT2 Transcriptional r 98.1 1.3E-05 2.7E-10 56.8 6.5 77 18-94 114-202 (480)
99 PF08675 RNA_bind: RNA binding 98.0 7.8E-05 1.7E-09 42.6 7.3 61 13-79 4-64 (87)
100 KOG0106 Alternative splicing f 98.0 8.2E-06 1.8E-10 54.7 3.4 72 15-91 96-167 (216)
101 KOG1190 Polypyrimidine tract-b 98.0 4.6E-05 1E-09 55.2 7.4 76 18-94 414-490 (492)
102 KOG1456 Heterogeneous nuclear 97.9 0.00012 2.6E-09 52.7 8.6 79 18-98 120-202 (494)
103 KOG3152 TBP-binding protein, a 97.8 1E-05 2.3E-10 55.1 2.3 69 18-86 74-157 (278)
104 KOG1365 RNA-binding protein Fu 97.8 8.3E-05 1.8E-09 53.6 6.3 78 14-91 276-358 (508)
105 KOG1995 Conserved Zn-finger pr 97.8 4.6E-05 1E-09 54.1 4.9 80 17-96 65-155 (351)
106 KOG2193 IGF-II mRNA-binding pr 97.8 2.9E-05 6.3E-10 56.5 3.7 98 19-121 2-108 (584)
107 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00014 3E-09 38.3 5.1 52 19-74 2-53 (53)
108 KOG0129 Predicted RNA-binding 97.7 0.0011 2.3E-08 49.5 11.2 63 15-78 256-327 (520)
109 KOG2416 Acinus (induces apopto 97.7 5.1E-05 1.1E-09 57.2 4.4 79 16-97 442-524 (718)
110 KOG0120 Splicing factor U2AF, 97.7 0.00018 4E-09 53.8 7.2 62 34-95 425-492 (500)
111 KOG4210 Nuclear localization s 97.6 8E-05 1.7E-09 52.3 3.6 79 18-97 184-266 (285)
112 KOG4307 RNA binding protein RB 97.6 0.00038 8.2E-09 53.7 7.1 73 19-91 868-943 (944)
113 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00097 2.1E-08 39.7 7.5 75 18-94 6-91 (100)
114 KOG4849 mRNA cleavage factor I 97.5 0.00014 3.1E-09 51.9 4.4 74 18-91 80-158 (498)
115 KOG0105 Alternative splicing f 97.5 0.0011 2.3E-08 43.6 7.4 62 18-83 115-176 (241)
116 KOG0129 Predicted RNA-binding 97.4 0.0018 3.8E-08 48.4 8.4 64 13-76 365-432 (520)
117 KOG0112 Large RNA-binding prot 97.3 0.00044 9.5E-09 54.5 4.9 81 15-98 452-534 (975)
118 KOG1855 Predicted RNA-binding 97.3 0.00042 9E-09 50.6 4.0 64 17-80 230-309 (484)
119 PF08952 DUF1866: Domain of un 97.2 0.0031 6.7E-08 39.9 7.2 58 34-97 52-109 (146)
120 PF03467 Smg4_UPF3: Smg-4/UPF3 97.2 0.0017 3.6E-08 42.7 6.2 82 16-97 5-100 (176)
121 PF07576 BRAP2: BRCA1-associat 97.2 0.017 3.7E-07 35.0 10.0 80 15-94 9-94 (110)
122 KOG0128 RNA-binding protein SA 97.1 0.00051 1.1E-08 53.9 3.0 77 18-94 736-814 (881)
123 KOG4676 Splicing factor, argin 97.0 0.0017 3.7E-08 47.1 5.4 74 19-93 8-87 (479)
124 PF10309 DUF2414: Protein of u 97.0 0.0049 1.1E-07 33.4 5.9 55 18-77 5-62 (62)
125 KOG0112 Large RNA-binding prot 97.0 0.00025 5.5E-09 55.8 1.2 105 18-122 372-484 (975)
126 KOG4660 Protein Mei2, essentia 96.8 0.0028 6.1E-08 47.6 4.8 77 19-95 389-473 (549)
127 KOG1365 RNA-binding protein Fu 96.7 0.021 4.5E-07 41.6 8.4 58 19-76 162-225 (508)
128 KOG0128 RNA-binding protein SA 96.5 0.00033 7.2E-09 54.8 -1.5 94 19-121 668-764 (881)
129 KOG1996 mRNA splicing factor [ 96.4 0.018 3.8E-07 40.6 6.6 63 33-95 301-367 (378)
130 KOG2202 U2 snRNP splicing fact 96.4 0.0018 4E-08 44.4 1.6 63 34-96 84-149 (260)
131 PF04847 Calcipressin: Calcipr 96.3 0.026 5.6E-07 37.3 6.5 63 31-96 8-72 (184)
132 KOG0115 RNA-binding protein p5 96.3 0.0064 1.4E-07 41.8 3.6 60 19-78 32-93 (275)
133 KOG0804 Cytoplasmic Zn-finger 96.2 0.046 1E-06 40.5 8.1 76 18-93 74-154 (493)
134 PF15023 DUF4523: Protein of u 95.9 0.094 2E-06 33.3 7.4 71 18-93 86-160 (166)
135 KOG4307 RNA binding protein RB 95.8 0.013 2.8E-07 45.6 4.0 84 12-95 428-514 (944)
136 KOG2135 Proteins containing th 95.5 0.011 2.5E-07 43.9 2.4 74 19-96 373-447 (526)
137 KOG4285 Mitotic phosphoprotein 94.7 0.19 4.2E-06 35.6 6.6 63 19-86 198-260 (350)
138 PF03880 DbpA: DbpA RNA bindin 94.5 0.38 8.2E-06 26.8 6.4 59 28-92 11-74 (74)
139 KOG2068 MOT2 transcription fac 94.4 0.013 2.8E-07 41.7 0.4 78 18-95 77-163 (327)
140 KOG4574 RNA-binding protein (c 94.4 0.036 7.9E-07 44.1 2.7 69 27-98 307-377 (1007)
141 KOG2591 c-Mpl binding protein, 93.2 0.24 5.1E-06 38.0 5.1 65 19-87 176-244 (684)
142 KOG2193 IGF-II mRNA-binding pr 92.6 0.003 6.5E-08 46.4 -5.3 80 18-97 80-159 (584)
143 KOG4210 Nuclear localization s 92.1 0.22 4.7E-06 35.3 3.5 105 17-121 87-213 (285)
144 KOG4483 Uncharacterized conser 91.8 0.43 9.2E-06 35.3 4.7 56 17-76 390-446 (528)
145 KOG4410 5-formyltetrahydrofola 91.6 0.68 1.5E-05 32.8 5.4 50 16-68 328-378 (396)
146 KOG2253 U1 snRNP complex, subu 91.5 0.18 3.9E-06 39.1 2.8 70 16-91 38-107 (668)
147 PF11767 SET_assoc: Histone ly 91.5 1.4 3E-05 24.2 6.6 55 29-89 11-65 (66)
148 KOG2318 Uncharacterized conser 85.2 14 0.0003 29.0 8.9 80 16-95 172-308 (650)
149 KOG0115 RNA-binding protein p5 84.0 2.3 5E-05 29.7 4.1 55 67-121 4-59 (275)
150 KOG4019 Calcineurin-mediated s 82.7 1.7 3.7E-05 28.7 2.9 77 18-97 10-92 (193)
151 KOG4676 Splicing factor, argin 82.5 0.14 3E-06 37.6 -2.3 63 19-83 152-214 (479)
152 PF10567 Nab6_mRNP_bdg: RNA-re 75.2 9.6 0.00021 27.2 4.9 79 18-96 15-109 (309)
153 KOG0114 Predicted RNA-binding 74.2 1.8 3.9E-05 26.1 1.0 25 99-123 24-48 (124)
154 KOG0226 RNA-binding proteins [ 70.2 6.5 0.00014 27.5 3.1 99 19-117 97-214 (290)
155 PLN03134 glycine-rich RNA-bind 67.3 3.3 7.1E-05 26.2 1.2 23 99-121 40-62 (144)
156 PF03468 XS: XS domain; Inter 62.8 9.7 0.00021 23.3 2.6 56 20-75 10-75 (116)
157 KOG1295 Nonsense-mediated deca 61.7 17 0.00038 26.8 4.1 66 18-83 7-78 (376)
158 PF02714 DUF221: Domain of unk 60.7 21 0.00046 25.4 4.5 49 60-110 1-51 (325)
159 PF09707 Cas_Cas2CT1978: CRISP 60.4 26 0.00055 20.3 3.9 48 18-65 25-72 (86)
160 KOG0125 Ataxin 2-binding prote 58.7 5.4 0.00012 29.0 1.1 22 99-120 102-123 (376)
161 KOG2891 Surface glycoprotein [ 54.8 28 0.0006 24.9 4.0 38 14-51 145-194 (445)
162 PF07292 NID: Nmi/IFP 35 domai 54.1 9.7 0.00021 22.1 1.5 23 17-39 51-73 (88)
163 PF11823 DUF3343: Protein of u 51.0 29 0.00063 19.0 3.1 28 58-85 2-29 (73)
164 PRK11558 putative ssRNA endonu 50.8 32 0.0007 20.4 3.4 49 18-66 27-75 (97)
165 PF15513 DUF4651: Domain of un 44.8 52 0.0011 17.8 3.9 19 33-51 9-27 (62)
166 KOG2295 C2H2 Zn-finger protein 43.0 4 8.6E-05 31.6 -1.6 68 19-86 232-302 (648)
167 KOG0122 Translation initiation 42.9 19 0.00041 25.2 1.8 23 99-121 195-217 (270)
168 TIGR02542 B_forsyth_147 Bacter 41.9 43 0.00093 20.7 3.0 24 26-51 11-34 (145)
169 KOG0156 Cytochrome P450 CYP2 s 38.5 1.1E+02 0.0023 23.7 5.3 62 19-87 33-97 (489)
170 KOG0116 RasGAP SH3 binding pro 37.0 36 0.00079 25.7 2.6 25 99-123 294-318 (419)
171 PF01191 RNA_pol_Rpb5_C: RNA p 36.1 39 0.00084 19.0 2.0 20 104-123 14-33 (74)
172 PF15063 TC1: Thyroid cancer p 35.9 38 0.00083 19.1 2.0 28 19-46 26-53 (79)
173 KOG4008 rRNA processing protei 35.3 40 0.00087 23.5 2.4 35 15-49 37-71 (261)
174 KOG4213 RNA-binding protein La 34.4 1.4E+02 0.003 20.1 4.6 47 30-76 118-169 (205)
175 PF13689 DUF4154: Domain of un 34.3 1.2E+02 0.0026 18.9 4.5 48 46-94 15-62 (145)
176 TIGR01873 cas_CT1978 CRISPR-as 33.5 87 0.0019 18.2 3.3 49 18-66 25-74 (87)
177 PF03439 Spt5-NGN: Early trans 31.9 1E+02 0.0022 17.4 3.8 28 54-81 41-68 (84)
178 PRK09570 rpoH DNA-directed RNA 30.6 40 0.00087 19.2 1.5 21 103-123 16-36 (79)
179 cd00027 BRCT Breast Cancer Sup 26.7 95 0.0021 15.5 3.1 26 19-44 2-27 (72)
180 PF14893 PNMA: PNMA 25.9 55 0.0012 24.0 1.9 23 18-40 18-40 (331)
181 PHA01632 hypothetical protein 25.7 1E+02 0.0022 16.3 2.4 20 21-40 19-38 (64)
182 PHA03008 hypothetical protein; 24.6 1.9E+02 0.0042 19.7 4.1 38 15-52 18-55 (234)
183 PF12829 Mhr1: Transcriptional 24.1 1.2E+02 0.0026 17.8 2.8 23 57-79 51-73 (91)
184 PF13773 DUF4170: Domain of un 24.1 93 0.002 17.2 2.2 27 60-86 28-54 (69)
185 PF15407 Spo7_2_N: Sporulation 23.9 25 0.00054 19.3 -0.1 18 17-34 26-43 (67)
186 PF14026 DUF4242: Protein of u 23.8 1.5E+02 0.0031 16.6 7.7 60 20-80 2-69 (77)
187 COG2012 RPB5 DNA-directed RNA 23.0 69 0.0015 18.2 1.6 20 104-123 20-39 (80)
188 PF11181 YflT: Heat induced st 22.8 1.7E+02 0.0036 17.1 3.3 30 62-91 4-33 (103)
189 smart00457 MACPF membrane-atta 22.7 78 0.0017 20.8 2.1 22 23-44 30-51 (194)
190 PRK10905 cell division protein 22.2 2.4E+02 0.0053 20.7 4.5 58 19-79 248-308 (328)
191 PF13046 DUF3906: Protein of u 22.0 1.3E+02 0.0028 16.4 2.4 31 32-62 32-63 (64)
192 COG0030 KsgA Dimethyladenosine 21.7 1.7E+02 0.0037 20.7 3.6 32 19-50 96-127 (259)
193 KOG2631 Class II aldolase/addu 20.6 3E+02 0.0065 19.0 5.1 46 22-72 159-205 (238)
No 1
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=5.7e-23 Score=120.35 Aligned_cols=123 Identities=67% Similarity=1.112 Sum_probs=117.2
Q ss_pred CCcccccCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCc
Q 033227 1 MATIPLRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80 (124)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 80 (124)
|++....+++.+.|+..++.|||+|||..++.++..++|.+||.|..|++--++.++|.|||.|.+..+|.+|+..|+|.
T Consensus 1 m~~~~~~~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~ 80 (124)
T KOG0114|consen 1 MAMTGKKKQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGY 80 (124)
T ss_pred CCccccccCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhccc
Confidence 78888889999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred eeCCeEEEEEEeeccccccccCcccCHHHHHHHHHHcCCCCCC
Q 033227 81 NVANRYLIVLYYQQTKMSKKFDQKKKDDELAKMQEKYGVSTKD 123 (124)
Q Consensus 81 ~i~g~~l~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 123 (124)
.+.++.+.|-|..+.+.....+.+..+++|..+..++|++++.
T Consensus 81 n~~~ryl~vlyyq~~~~~~~~~~~k~~~~l~~~~~ky~i~~~~ 123 (124)
T KOG0114|consen 81 NVDNRYLVVLYYQPEDAFKLMDSRKAREELSILKEKYGIQTKN 123 (124)
T ss_pred ccCCceEEEEecCHHHHHHHHHhHHhhhHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999998764
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.86 E-value=7.9e-21 Score=135.27 Aligned_cols=108 Identities=29% Similarity=0.428 Sum_probs=96.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
....+++|||+|||+.+++++|+++|+.||.|..|.++.+ +.++|||||+|.+.++|+.|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 4455799999999999999999999999999999999865 4568999999999999999999999999999999999
Q ss_pred Eeeccccc--------cccCcccCHHHHHHHHHHcCCCC
Q 033227 91 YYQQTKMS--------KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 91 ~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
++++.... .+++..+++++|+++|++||...
T Consensus 183 ~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~ 221 (346)
T TIGR01659 183 YARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIV 221 (346)
T ss_pred cccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEE
Confidence 98754222 78999999999999999998653
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.84 E-value=4.2e-20 Score=131.90 Aligned_cols=104 Identities=25% Similarity=0.392 Sum_probs=94.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..++|||+|||..+++++|+.+|+.||.|..|.++.+ +.++|||||+|.+.++|..|+..|+|..+.|+.|+|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 3689999999999999999999999999999999875 5578999999999999999999999999999999999998
Q ss_pred ccccc--------cccCcccCHHHHHHHHHHcCCC
Q 033227 94 QTKMS--------KKFDQKKKDDELAKMQEKYGVS 120 (124)
Q Consensus 94 ~~~~~--------~~~~~~~~~~~l~~~~~~~g~~ 120 (124)
+.... .+++..+++++|.++|++||..
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i 116 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQI 116 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCCE
Confidence 66532 7799999999999999999864
No 4
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=4.3e-19 Score=119.42 Aligned_cols=107 Identities=25% Similarity=0.427 Sum_probs=98.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
+..+.|.|.=||..++.++++.+|...|+|.+|++++| +++.||+||.|-...+|++|+..|||..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 34578889889999999999999999999999999996 678999999999999999999999999999999999999
Q ss_pred eccccc--------cccCcccCHHHHHHHHHHcCCCCC
Q 033227 93 QQTKMS--------KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 93 ~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
+|.... ..+++.++..|||++|++||.+.-
T Consensus 119 RPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIIt 156 (360)
T KOG0145|consen 119 RPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIIT 156 (360)
T ss_pred cCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhh
Confidence 998765 668999999999999999998653
No 5
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=2e-18 Score=109.44 Aligned_cols=82 Identities=18% Similarity=0.338 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
..+++|||+|||+.+++++|+++|++||.|.++.++.+ +.++|||||+|.+.++|+.|++.|++..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34689999999999999999999999999999998875 456899999999999999999999999999999999998
Q ss_pred ecccc
Q 033227 93 QQTKM 97 (124)
Q Consensus 93 ~~~~~ 97 (124)
.+...
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 6
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.4e-18 Score=123.45 Aligned_cols=111 Identities=19% Similarity=0.366 Sum_probs=96.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCce-eCC--eEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFN-VAN--RYL 87 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~-i~g--~~l 87 (124)
++.+.-++||+.||..++|.+|+.+|++||.|.+|.+++| +.++|||||.|.++++|.+|+.+||+.. +.| +++
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3444579999999999999999999999999999999987 4558999999999999999999999854 444 899
Q ss_pred EEEEeeccccc---------cccCcccCHHHHHHHHHHcCCCCCCC
Q 033227 88 IVLYYQQTKMS---------KKFDQKKKDDELAKMQEKYGVSTKDK 124 (124)
Q Consensus 88 ~v~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~~~ 124 (124)
.|.|++..+.. +-+.++.++++++++|++||.+++++
T Consensus 110 qvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ 155 (510)
T KOG0144|consen 110 QVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCY 155 (510)
T ss_pred eecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhh
Confidence 99999966554 44778899999999999999998763
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.78 E-value=3.1e-18 Score=128.52 Aligned_cols=106 Identities=20% Similarity=0.347 Sum_probs=92.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..++|||+|||+.+++++|+.+|.+||.|.++.++++ ++++|||||+|.+.++|+.|+..|||..+.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4589999999999999999999999999999999875 5679999999999999999999999999999999998654
Q ss_pred cccc-------------------ccccCcccCHHHHHHHHHHcCCCCC
Q 033227 94 QTKM-------------------SKKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 94 ~~~~-------------------~~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.... ..+++...++++|.++|+.||....
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~s 233 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVK 233 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeE
Confidence 2110 1678888999999999999997643
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.78 E-value=5.2e-18 Score=127.81 Aligned_cols=103 Identities=19% Similarity=0.425 Sum_probs=92.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccc
Q 033227 20 VLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 20 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 96 (124)
.|||+|||+.+++++|+++|++||.|.+|++.++ ++++|||||+|.+.++|++|+..+++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 6999999999999999999999999999999875 4568999999999999999999999999999999999986332
Q ss_pred c----------ccccCcccCHHHHHHHHHHcCCCCC
Q 033227 97 M----------SKKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 97 ~----------~~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
. .++++.++++++|.++|+.||....
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~ 117 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILS 117 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcce
Confidence 1 1679999999999999999996543
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=6.4e-18 Score=120.68 Aligned_cols=80 Identities=24% Similarity=0.490 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.+..|||+|||+.+++++|+++|++||.|.+++++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|+|.|..
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 3458999999999999999999999999999999875 5669999999999999999999999999999999999987
Q ss_pred ccc
Q 033227 94 QTK 96 (124)
Q Consensus 94 ~~~ 96 (124)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 664
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=3.6e-17 Score=122.47 Aligned_cols=106 Identities=25% Similarity=0.360 Sum_probs=92.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeC-CeEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVA-NRYLIV 89 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-g~~l~v 89 (124)
.++..+++|||+|||+.+++++|..+|++||.|..+++++| +.++|||||+|.+.++|++|++.||+..+. |+.+.|
T Consensus 53 ~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 53 VQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 34556799999999999999999999999999999998875 667999999999999999999999999886 788888
Q ss_pred EEeecccc--ccccCcccCHHHHHHHHHHcC
Q 033227 90 LYYQQTKM--SKKFDQKKKDDELAKMQEKYG 118 (124)
Q Consensus 90 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g 118 (124)
..+..... ..+++...++++|.++|++++
T Consensus 133 ~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~ 163 (578)
T TIGR01648 133 CISVDNCRLFVGGIPKNKKREEILEEFSKVT 163 (578)
T ss_pred cccccCceeEeecCCcchhhHHHHHHhhccc
Confidence 77654433 278999999999999999885
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.73 E-value=4.1e-17 Score=90.95 Aligned_cols=68 Identities=35% Similarity=0.649 Sum_probs=63.4
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 21 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
|||+|||+.+++.+|+.+|++||.+..+.+..+ +..+++|||+|.+.++|+.|+..|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988774 55589999999999999999999999999999885
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.72 E-value=1.5e-16 Score=118.04 Aligned_cols=101 Identities=23% Similarity=0.429 Sum_probs=89.0
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 17 VNRVLYVRNLPF-NISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 17 ~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
.+++|||+|||+ .+++++|+++|+.||.|.+|+++.++ +|+|||+|.+.++|..|+..|||..+.|+.|+|.+++..
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 468999999998 69999999999999999999998764 589999999999999999999999999999999987532
Q ss_pred cc---------------------------------------------ccccCcccCHHHHHHHHHHcCC
Q 033227 96 KM---------------------------------------------SKKFDQKKKDDELAKMQEKYGV 119 (124)
Q Consensus 96 ~~---------------------------------------------~~~~~~~~~~~~l~~~~~~~g~ 119 (124)
.. ..|++..+++++|.++|+++|.
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~ 420 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGV 420 (481)
T ss_pred cccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCC
Confidence 10 1456777899999999999996
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.72 E-value=5.6e-17 Score=103.93 Aligned_cols=109 Identities=21% Similarity=0.293 Sum_probs=95.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCC---CccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD---TRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
+.+...+|||+||++.+++..|+++|-+.|+|.+++++++.. .+||||++|.+.++|+.|++.||..++.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 445678999999999999999999999999999999988632 37999999999999999999999999999999999
Q ss_pred Eeecccc---------ccccCcccCHHHHHHHHHHcCCCCC
Q 033227 91 YYQQTKM---------SKKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 91 ~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+..... .+|++..+++..|...|+.||+..+
T Consensus 85 kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~ 125 (203)
T KOG0131|consen 85 KASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLIS 125 (203)
T ss_pred ecccccccccccccccccccCcchhHHHHHHHHHhcccccc
Confidence 9882221 1778889999999999999998654
No 14
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1.4e-16 Score=113.72 Aligned_cols=107 Identities=23% Similarity=0.380 Sum_probs=96.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeC-CeEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVA-NRYL 87 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-g~~l 87 (124)
.++++.++.|||+.||.++.|++|.-+|++.|.|-+++|++| +.++|||||.|.+.+.|+.|++.||++.|. |+.|
T Consensus 77 g~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 77 GPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL 156 (506)
T ss_pred CCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence 345577899999999999999999999999999999999986 677999999999999999999999999997 8999
Q ss_pred EEEEeecccc--ccccCcccCHHHHHHHHHHcC
Q 033227 88 IVLYYQQTKM--SKKFDQKKKDDELAKMQEKYG 118 (124)
Q Consensus 88 ~v~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g 118 (124)
.|..+-.+.+ ..++++..+++++.+.+++.+
T Consensus 157 gvc~Svan~RLFiG~IPK~k~keeIlee~~kVt 189 (506)
T KOG0117|consen 157 GVCVSVANCRLFIGNIPKTKKKEEILEEMKKVT 189 (506)
T ss_pred EEEEeeecceeEeccCCccccHHHHHHHHHhhC
Confidence 9888876655 399999999999998888764
No 15
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=8.8e-17 Score=107.17 Aligned_cols=80 Identities=24% Similarity=0.447 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
+...+|.|.||+.++++.+|.++|.+||.|.++++.++ +.++|||||.|.++++|.+|++.|||+-++.-.|+|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 34578999999999999999999999999999999886 556999999999999999999999999999999999999
Q ss_pred ecc
Q 033227 93 QQT 95 (124)
Q Consensus 93 ~~~ 95 (124)
+|.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.72 E-value=1.5e-16 Score=117.24 Aligned_cols=104 Identities=23% Similarity=0.418 Sum_probs=91.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..++|||+|||..+++.+|+++|+.||.|..|.++.+ +.++|||||+|.+.++|.+|+. |+|..+.|++|.|.+..
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 4689999999999999999999999999999999875 5568999999999999999997 89999999999998865
Q ss_pred cccc--------------------ccccCcccCHHHHHHHHHHcCCCC
Q 033227 94 QTKM--------------------SKKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 94 ~~~~--------------------~~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.... ..+++..+++++|.++|+.||...
T Consensus 167 ~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~ 214 (457)
T TIGR01622 167 AEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIE 214 (457)
T ss_pred hhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeE
Confidence 3211 166888899999999999999653
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=8.1e-17 Score=108.82 Aligned_cols=107 Identities=15% Similarity=0.319 Sum_probs=95.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
..-++|+-|.+.++.+.|++.|.+||.|++.++++| .+++||+||.|.+.++|++||..|||..|++|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 467899999999999999999999999999999886 67799999999999999999999999999999999999986
Q ss_pred cccc------------------------cccCcccCHHHHHHHHHHcCCCCCCC
Q 033227 95 TKMS------------------------KKFDQKKKDDELAKMQEKYGVSTKDK 124 (124)
Q Consensus 95 ~~~~------------------------~~~~~~~~~~~l~~~~~~~g~~~~~~ 124 (124)
+... .++....++++|++.|++||.+.|-|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVR 195 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVR 195 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEE
Confidence 6533 44555678999999999999987754
No 18
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=9.3e-17 Score=110.92 Aligned_cols=82 Identities=26% Similarity=0.401 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc-CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS-SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
..+..++|+|+|||+...+.||+.+|++||.|.+|.++. +..|||||||+|.+.++|++|-+.|||..|.||+|.|..+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 344568999999999999999999999999999998887 5677999999999999999999999999999999999988
Q ss_pred ecc
Q 033227 93 QQT 95 (124)
Q Consensus 93 ~~~ 95 (124)
.+.
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 755
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.70 E-value=3.5e-16 Score=116.15 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=87.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHh--CCceeCCeEEEEEEeecc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHL--SGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l--~~~~i~g~~l~v~~~~~~ 95 (124)
+++|||+|||+.+++++|+++|++||.|.++.++.+ +++|||+|.+.++|++|+..+ ++..+.|++|.|.|+...
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~---k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG---KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC---CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 679999999999999999999999999999988754 589999999999999999975 678999999999998643
Q ss_pred cc--------------------ccccCcccCHHHHHHHHHHcCCCC
Q 033227 96 KM--------------------SKKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 96 ~~--------------------~~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
+. ..+++..+++++|.++|+.||...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~ 124 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVL 124 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEE
Confidence 20 035677899999999999999654
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.70 E-value=2.4e-16 Score=107.14 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=72.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
.++|||+|||+.+++++|+++|+.||.|.++.++.++.++|||||+|.+.++|+.|+. |+|..+.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 5799999999999999999999999999999999887778999999999999999996 9999999999999998744
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.66 E-value=1.5e-15 Score=114.56 Aligned_cols=107 Identities=27% Similarity=0.430 Sum_probs=93.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeC----CeEEEE
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVA----NRYLIV 89 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~----g~~l~v 89 (124)
...++|||+|||..+++++|+++|..||.|.++.+..+ +.++|||||+|.+.++|.+|++.|+|..+. |+.+.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 34578999999999999999999999999999988775 455889999999999999999999999999 999999
Q ss_pred EEeeccccc--------------------------cccCcccCHHHHHHHHHHcCCCCC
Q 033227 90 LYYQQTKMS--------------------------KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 90 ~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.++...... .+++..+++++|.++|++||...+
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~ 314 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITS 314 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEE
Confidence 887544222 568888999999999999997654
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.66 E-value=2.6e-15 Score=111.96 Aligned_cols=79 Identities=19% Similarity=0.385 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
...++|||+|||..+++++|+++|+.||.|..+.++.+ +.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34589999999999999999999999999999888764 567899999999999999999999999999999999998
Q ss_pred ec
Q 033227 93 QQ 94 (124)
Q Consensus 93 ~~ 94 (124)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 53
No 23
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=5.3e-16 Score=94.39 Aligned_cols=78 Identities=32% Similarity=0.514 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.+++|||+||...++|++|+++|+.+|+|..|.+-.| +..+|||||+|-+.++|+.|++.++|..++.++|++.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 4689999999999999999999999999999877554 4558999999999999999999999999999999999976
Q ss_pred c
Q 033227 94 Q 94 (124)
Q Consensus 94 ~ 94 (124)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 24
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.64 E-value=3.4e-15 Score=83.47 Aligned_cols=68 Identities=31% Similarity=0.609 Sum_probs=60.7
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 21 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
|||+|||+.+++++|.++|+.||.|..+.+..+ +.++++|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999988875 34579999999999999999999999999999874
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3.5e-15 Score=100.96 Aligned_cols=81 Identities=20% Similarity=0.361 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..+.+++|||+||+..+++++|+..|++||+|.+|++..++ ||+||.|.+.+.|..||-.+|+..|.|+.+++.|.+
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q---GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGK 236 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ---GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGK 236 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc---ceEEEEecchhhHHHHHHHhcCceeCceEEEEeccc
Confidence 34558999999999999999999999999999999998774 899999999999999999999999999999999988
Q ss_pred cccc
Q 033227 94 QTKM 97 (124)
Q Consensus 94 ~~~~ 97 (124)
....
T Consensus 237 e~~~ 240 (321)
T KOG0148|consen 237 EGDD 240 (321)
T ss_pred cCCC
Confidence 6543
No 26
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.62 E-value=6.1e-15 Score=99.02 Aligned_cols=77 Identities=30% Similarity=0.442 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
.+.+|+|+||++.+++.+|+++|+.||.|.+|.+++++.+.++|||+|.+.++++.|+. |+|..|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 46899999999999999999999999999999999998888999999999999999996 999999999999988653
No 27
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.61 E-value=1.7e-15 Score=103.40 Aligned_cols=101 Identities=24% Similarity=0.366 Sum_probs=92.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccccc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKMS 98 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~~ 98 (124)
.++||+|||..+++.+|+.+|++||.|.+|.++ +.||||-..+...++.|+..|+|.+|+|..|+|+-++.+...
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 478999999999999999999999999999998 459999999999999999999999999999999999877432
Q ss_pred ------cccCcccCHHHHHHHHHHcCCCCCCC
Q 033227 99 ------KKFDQKKKDDELAKMQEKYGVSTKDK 124 (124)
Q Consensus 99 ------~~~~~~~~~~~l~~~~~~~g~~~~~~ 124 (124)
.|+....+.+|++..|+++|...+|+
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecd 109 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECD 109 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeee
Confidence 78889999999999999999888763
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=9.7e-15 Score=109.94 Aligned_cols=78 Identities=18% Similarity=0.424 Sum_probs=72.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
.++|||+|||+.+++++|+.+|+.||.|.++.+.++ +.++|||||+|.+.++|..|+..||++.++|+.|+|.++..
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 479999999999999999999999999999999875 45689999999999999999999999999999999999885
Q ss_pred c
Q 033227 95 T 95 (124)
Q Consensus 95 ~ 95 (124)
.
T Consensus 284 p 284 (612)
T TIGR01645 284 P 284 (612)
T ss_pred C
Confidence 4
No 29
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=1.1e-14 Score=103.99 Aligned_cols=80 Identities=33% Similarity=0.468 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVAN--RYLIVLY 91 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~~ 91 (124)
..++|||+|||..+++++|+++|++||.|..+.++.+ +.+++||||+|.+.++|++|++.|++..+.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 3578999999999999999999999999999988875 4557999999999999999999999998875 7999999
Q ss_pred eeccc
Q 033227 92 YQQTK 96 (124)
Q Consensus 92 ~~~~~ 96 (124)
++...
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 88653
No 30
>PLN03213 repressor of silencing 3; Provisional
Probab=99.60 E-value=8.8e-15 Score=106.26 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCH--HHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDI--YDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
...+.+|||+||++.+++++|...|.+||.|..+.+++... +|||||+|.+. .++.+|+..|||..|.|+.|+|..+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 34468999999999999999999999999999999987543 89999999987 6899999999999999999999999
Q ss_pred eccc
Q 033227 93 QQTK 96 (124)
Q Consensus 93 ~~~~ 96 (124)
++.-
T Consensus 86 KP~Y 89 (759)
T PLN03213 86 KEHY 89 (759)
T ss_pred cHHH
Confidence 8764
No 31
>smart00362 RRM_2 RNA recognition motif.
Probab=99.58 E-value=3.4e-14 Score=78.63 Aligned_cols=70 Identities=34% Similarity=0.650 Sum_probs=63.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC-CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 20 VLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS-KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 20 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
+|+|+|||..++..+|+.+|.+||.+..+.+..+ +.++++|||+|.+.+.|+.|+..+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 4899999999999999999999999999888765 445799999999999999999999999999999876
No 32
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=3.6e-14 Score=103.83 Aligned_cols=81 Identities=25% Similarity=0.450 Sum_probs=75.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc--CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
...|+|+|||+.+...+|+.+|+.||.+.+|.+++ ++..+|||||.|....+|..|++.+|+..|+|+++.|.|+-++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 47899999999999999999999999999999987 4555799999999999999999999999999999999999988
Q ss_pred ccc
Q 033227 96 KMS 98 (124)
Q Consensus 96 ~~~ 98 (124)
..+
T Consensus 197 d~y 199 (678)
T KOG0127|consen 197 DTY 199 (678)
T ss_pred ccc
Confidence 766
No 33
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=1.1e-14 Score=95.21 Aligned_cols=79 Identities=30% Similarity=0.489 Sum_probs=73.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
-..|.|.||..-++.++|+.+|++||.|-.|.|.+| ++++|||||-|....+|+.|+++|+|..++|+.|.|++++-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 378999999999999999999999999999999986 56689999999999999999999999999999999998875
Q ss_pred cc
Q 033227 95 TK 96 (124)
Q Consensus 95 ~~ 96 (124)
..
T Consensus 93 gr 94 (256)
T KOG4207|consen 93 GR 94 (256)
T ss_pred CC
Confidence 43
No 34
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.7e-14 Score=92.10 Aligned_cols=80 Identities=30% Similarity=0.425 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
+.+++|||+||+..++..+|...|..||.+..|-+-. ...|||||+|.+.-+|+.|+..|+|..|.|..++|+.+.-.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 3479999999999999999999999999988765543 34699999999999999999999999999999999998755
Q ss_pred cc
Q 033227 96 KM 97 (124)
Q Consensus 96 ~~ 97 (124)
..
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 44
No 35
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=8.2e-15 Score=97.36 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=67.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
-++|||+||++.+..+.|+++|++||+|.+..++.| ++++||+||+|.+.++|.+|++- ..-.|+||+..|..+.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 379999999999999999999999999999888875 67799999999999999999985 34578999888877654
No 36
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6.7e-15 Score=97.21 Aligned_cols=85 Identities=26% Similarity=0.420 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
...++|||++|...+++..|...|-+||+|..|.++.| .+.+||+||+|.-.++|.+|+..||+..+.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 44789999999999999999999999999999999876 445899999999999999999999999999999999999
Q ss_pred eccccccc
Q 033227 93 QQTKMSKK 100 (124)
Q Consensus 93 ~~~~~~~~ 100 (124)
+|.+....
T Consensus 88 kP~kikeg 95 (298)
T KOG0111|consen 88 KPEKIKEG 95 (298)
T ss_pred CCccccCC
Confidence 99887643
No 37
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.5e-14 Score=88.95 Aligned_cols=77 Identities=25% Similarity=0.456 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.+.+|||+++.+.++++++...|..||.|.++++..| +..+||++|+|.+..+|++|+..+||..+.|+.+.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 3689999999999999999999999999999999876 4448999999999999999999999999999999999975
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.56 E-value=4.5e-14 Score=104.13 Aligned_cols=76 Identities=34% Similarity=0.609 Sum_probs=71.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|..|+..|+|..+.|+.|+|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 689999999999999999999999999999988875 3568999999999999999999999999999999999965
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=9.5e-14 Score=104.33 Aligned_cols=74 Identities=30% Similarity=0.445 Sum_probs=69.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccC--CceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKY--GAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
.++|||+||+..+++++|+++|++| |.|.+|.++ ++||||+|.+.++|.+|++.||+..|.|+.|+|.|+++.
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 5789999999999999999999999 999998765 469999999999999999999999999999999999875
Q ss_pred c
Q 033227 96 K 96 (124)
Q Consensus 96 ~ 96 (124)
.
T Consensus 308 ~ 308 (578)
T TIGR01648 308 D 308 (578)
T ss_pred C
Confidence 3
No 40
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.53 E-value=1.8e-13 Score=102.10 Aligned_cols=99 Identities=19% Similarity=0.329 Sum_probs=79.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccC------------CceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKY------------GAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANR 85 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~------------g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 85 (124)
.++|||+|||+.+++.+|..+|..+ +.|..+.+ ...+|||||+|.+.++|..|+. |+|..+.|+
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---~~~kg~afVeF~~~e~A~~Al~-l~g~~~~g~ 250 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---NKEKNFAFLEFRTVEEATFAMA-LDSIIYSNV 250 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---CCCCCEEEEEeCCHHHHhhhhc-CCCeEeeCc
Confidence 5899999999999999999999864 23444444 3446999999999999999995 999999999
Q ss_pred EEEEEEeeccc-------------------------------------cccccCcccCHHHHHHHHHHcCCC
Q 033227 86 YLIVLYYQQTK-------------------------------------MSKKFDQKKKDDELAKMQEKYGVS 120 (124)
Q Consensus 86 ~l~v~~~~~~~-------------------------------------~~~~~~~~~~~~~l~~~~~~~g~~ 120 (124)
.|+|....... -..+++..+++++|.++|+.||..
T Consensus 251 ~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 251 FLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred eeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 99996432111 016688889999999999999864
No 41
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.7e-15 Score=97.19 Aligned_cols=83 Identities=27% Similarity=0.482 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
-..+..|||+|||...||.+|..+|++||.|..|.+++| |+|+||||+.|.+-.+...|+..|||..|.|+.|+|.+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 344789999999999999999999999999999999986 66799999999999999999999999999999999998
Q ss_pred eecccc
Q 033227 92 YQQTKM 97 (124)
Q Consensus 92 ~~~~~~ 97 (124)
....+.
T Consensus 112 v~~Yk~ 117 (219)
T KOG0126|consen 112 VSNYKK 117 (219)
T ss_pred cccccC
Confidence 775543
No 42
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.52 E-value=2.4e-13 Score=72.91 Aligned_cols=56 Identities=38% Similarity=0.691 Sum_probs=50.6
Q ss_pred HHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 35 MYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 35 l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
|+.+|++||.|..+.+..++ +++|||+|.+.++|..|+..|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999887654 589999999999999999999999999999999985
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=3.3e-13 Score=91.28 Aligned_cols=83 Identities=22% Similarity=0.460 Sum_probs=74.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
..+..+..|||-||.+++.|..|+.+|.+||.|..+++++| .+++||+||.+.+.++|..|+..|||..+.++.|.|
T Consensus 273 ~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQV 352 (360)
T KOG0145|consen 273 GGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 352 (360)
T ss_pred CCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEE
Confidence 34455789999999999999999999999999999999986 445899999999999999999999999999999999
Q ss_pred EEeecc
Q 033227 90 LYYQQT 95 (124)
Q Consensus 90 ~~~~~~ 95 (124)
.|...+
T Consensus 353 sFKtnk 358 (360)
T KOG0145|consen 353 SFKTNK 358 (360)
T ss_pred EEecCC
Confidence 986543
No 44
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.49 E-value=5.9e-13 Score=73.96 Aligned_cols=72 Identities=36% Similarity=0.666 Sum_probs=65.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCC--CCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 20 VLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSK--DTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 20 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
+|+|+|||+.+++++|+.+|..+|.+..+.+..+. ..+++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 47999999999999999999999999999888654 3478999999999999999999999999999998864
No 45
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=3.3e-14 Score=101.51 Aligned_cols=81 Identities=27% Similarity=0.392 Sum_probs=73.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCc-eeCC--eEEEEEEe
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGF-NVAN--RYLIVLYY 92 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~-~i~g--~~l~v~~~ 92 (124)
.++|||+.|+..++|.+++++|.+||.|.+|++.++ +.++||+||.|++.+-|..|++.|||. .+.| .+|.|.|+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 578999999999999999999999999999999884 778999999999999999999999995 4554 89999999
Q ss_pred eccccc
Q 033227 93 QQTKMS 98 (124)
Q Consensus 93 ~~~~~~ 98 (124)
+.++.+
T Consensus 204 Dtqkdk 209 (510)
T KOG0144|consen 204 DTQKDK 209 (510)
T ss_pred ccCCCc
Confidence 988654
No 46
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=2.2e-13 Score=99.84 Aligned_cols=102 Identities=24% Similarity=0.373 Sum_probs=91.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCC---CCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSK---DTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
+.+|||++||+.++.++|.++|+..|+|..+.++.++ .++||+||.|+-.+++++|++...+..+.|+.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 4899999999999999999999999999999988754 3489999999999999999999999999999999999875
Q ss_pred cccc----------------------------------cccCcccCHHHHHHHHHHcCC
Q 033227 95 TKMS----------------------------------KKFDQKKKDDELAKMQEKYGV 119 (124)
Q Consensus 95 ~~~~----------------------------------~~~~~~~~~~~l~~~~~~~g~ 119 (124)
..+. +|++..+.+.+|..+|+.||-
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~ 143 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK 143 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce
Confidence 5433 678888899999999999985
No 47
>smart00360 RRM RNA recognition motif.
Probab=99.48 E-value=4e-13 Score=73.99 Aligned_cols=67 Identities=36% Similarity=0.617 Sum_probs=60.7
Q ss_pred EcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 23 VRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 23 v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
|+|||..+++++|+.+|++||.+..+.+..+ +.++++|||+|.+.++|..|+..+++..+.|+.++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5789999999999999999999999887764 445799999999999999999999999999999876
No 48
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=5.2e-13 Score=91.53 Aligned_cols=82 Identities=27% Similarity=0.478 Sum_probs=74.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
+=++|||.-|+.+++|..|+..|+.||.|..|.||.+ ++++|||||+|...-+...|.+..+|..|+|+.|.|.+-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 3489999999999999999999999999999999985 7779999999999999999999999999999999999876
Q ss_pred ccccc
Q 033227 94 QTKMS 98 (124)
Q Consensus 94 ~~~~~ 98 (124)
.....
T Consensus 180 gRTvk 184 (335)
T KOG0113|consen 180 GRTVK 184 (335)
T ss_pred ccccc
Confidence 55433
No 49
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.46 E-value=6.8e-13 Score=90.46 Aligned_cols=76 Identities=33% Similarity=0.632 Sum_probs=71.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.++|||+|||..+++++|+.+|..||.+..+.+..+ +.++|+|||.|.+.++|..|+..+++..+.|++|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 599999999999999999999999999999888876 5679999999999999999999999999999999999964
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2.8e-13 Score=87.49 Aligned_cols=78 Identities=35% Similarity=0.503 Sum_probs=71.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
.+.|||+|||.++.+.+|+.+|.+||.|..|.+.......+||||+|.+..+|+.|+..-+|..++|..|+|++..--
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 589999999999999999999999999999988765555689999999999999999999999999999999998754
No 51
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.44 E-value=6.5e-13 Score=96.76 Aligned_cols=79 Identities=27% Similarity=0.441 Sum_probs=74.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
+.+||+|+|+.+++++|..+|+..|.|..++++.| +..+||||++|.+.+++..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999986 455899999999999999999999999999999999998866
Q ss_pred cc
Q 033227 96 KM 97 (124)
Q Consensus 96 ~~ 97 (124)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 55
No 52
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.2e-13 Score=95.94 Aligned_cols=105 Identities=20% Similarity=0.344 Sum_probs=90.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
++|||+.|.+...|+.|+..|.+||+|.+|.+-|| ++.+||+||+|.-.+.|+.|++.|||.-++|+-|+|-....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 68999999999999999999999999999999886 455899999999999999999999999999999998743322
Q ss_pred ccc-------------------cccCcccCHHHHHHHHHHcCCCCCC
Q 033227 96 KMS-------------------KKFDQKKKDDELAKMQEKYGVSTKD 123 (124)
Q Consensus 96 ~~~-------------------~~~~~~~~~~~l~~~~~~~g~~~~~ 123 (124)
... ..+..+.+++++...|+.||.+-.|
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C 240 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKC 240 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeE
Confidence 111 4467788999999999999976544
No 53
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=8.1e-13 Score=99.08 Aligned_cols=104 Identities=25% Similarity=0.405 Sum_probs=88.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCC------ccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDT------RGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
+.|||.|+++.++...+...|...|.|..+.|...++. .|||||+|.+.++|+.|++.|+|..++|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 44999999999999999999999999998877653322 499999999999999999999999999999999999
Q ss_pred e--------ccccc---------cccCcccCHHHHHHHHHHcCCCCC
Q 033227 93 Q--------QTKMS---------KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 93 ~--------~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
. ..... +|++...+..+++++|..||....
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlks 642 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKS 642 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceee
Confidence 8 11111 778888899999999999987543
No 54
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=7.8e-13 Score=94.86 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=70.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccccc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKMS 98 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~~ 98 (124)
..|||+||+..+|++.|+++|++||.|.+|+.+ +.||||-|.++++|.+|++.+||..|+|..|.|..++|....
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 799999999999999999999999999998876 349999999999999999999999999999999999987543
No 55
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.4e-12 Score=93.83 Aligned_cols=101 Identities=20% Similarity=0.328 Sum_probs=90.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccccc-
Q 033227 20 VLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKMS- 98 (124)
Q Consensus 20 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~~- 98 (124)
.|||+ +.+++..|.+.|+++|.+.++++-+|-.+.|||||+|.+..+|++|+..||...+.|+++++.|+......
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~~ 79 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSLV 79 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCcee
Confidence 57888 89999999999999999999988765448999999999999999999999999999999999998866543
Q ss_pred --cccCcccCHHHHHHHHHHcCCCCCC
Q 033227 99 --KKFDQKKKDDELAKMQEKYGVSTKD 123 (124)
Q Consensus 99 --~~~~~~~~~~~l~~~~~~~g~~~~~ 123 (124)
.|++..++...|..+|+.||.+-.+
T Consensus 80 ~i~nl~~~~~~~~~~d~f~~~g~ilS~ 106 (369)
T KOG0123|consen 80 FIKNLDESIDNKSLYDTFSEFGNILSC 106 (369)
T ss_pred eecCCCcccCcHHHHHHHHhhcCeeEE
Confidence 8899999999999999999976443
No 56
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.40 E-value=1.9e-12 Score=85.76 Aligned_cols=81 Identities=28% Similarity=0.476 Sum_probs=73.8
Q ss_pred CcEEEEcCCCCCCCHHHHHH----HhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 18 NRVLYVRNLPFNISSEEMYD----IFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~----~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
+.+|||.||+..+..++|+. +|++||.|..|......+.+|-|||.|.+.+.|-.|++.|+|+.+.|+++++.|++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 45999999999998887666 99999999999988888889999999999999999999999999999999999999
Q ss_pred ccccc
Q 033227 94 QTKMS 98 (124)
Q Consensus 94 ~~~~~ 98 (124)
.....
T Consensus 89 s~sdi 93 (221)
T KOG4206|consen 89 SDSDI 93 (221)
T ss_pred Cccch
Confidence 76543
No 57
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=5.2e-13 Score=90.64 Aligned_cols=84 Identities=18% Similarity=0.354 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
+.++++.|||-.||.+..+.+|..+|.+||-|.+.++..| .++++|+||.|+|..+++.||..|||+.|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 4566899999999999999999999999999998877664 5669999999999999999999999999999999999
Q ss_pred Eeecccc
Q 033227 91 YYQQTKM 97 (124)
Q Consensus 91 ~~~~~~~ 97 (124)
..+++..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 8887743
No 58
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.35 E-value=4.1e-11 Score=79.58 Aligned_cols=84 Identities=19% Similarity=0.342 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCC----CCccEEEEEecCHHHHHHHHHHhCCceeC---CeEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSK----DTRGTAFVVYEDIYDAKTAVDHLSGFNVA---NRYL 87 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~g~~fv~f~~~~~a~~a~~~l~~~~i~---g~~l 87 (124)
++.-++|||.+||.++...+|+.+|..|..-....+..+. -++.+||+.|.+.++|.+|+..|||..++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3345999999999999999999999998776655555432 23579999999999999999999999998 6899
Q ss_pred EEEEeeccccc
Q 033227 88 IVLYYQQTKMS 98 (124)
Q Consensus 88 ~v~~~~~~~~~ 98 (124)
++.+++...+.
T Consensus 111 hiElAKSNtK~ 121 (284)
T KOG1457|consen 111 HIELAKSNTKR 121 (284)
T ss_pred EeeehhcCccc
Confidence 99999866444
No 59
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.8e-11 Score=88.15 Aligned_cols=102 Identities=25% Similarity=0.550 Sum_probs=86.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC-CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecccc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS-KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKM 97 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~ 97 (124)
..+||.||++.++..+|+.+|+.||.|.+|++..+ ..++|| ||+|.+.++|.+|+..+||..+.++.+.|........
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 34999999999999999999999999999999875 336899 9999999999999999999999999999977765443
Q ss_pred c----------------cccCcccCHHHHHHHHHHcCCCC
Q 033227 98 S----------------KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 98 ~----------------~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
. .+...+.+.+++..+|..+|...
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~ 195 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSIT 195 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcce
Confidence 2 34556677889999998887653
No 60
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=1.5e-11 Score=85.93 Aligned_cols=82 Identities=24% Similarity=0.359 Sum_probs=70.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHH-HhCCceeCCeEEEE
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVD-HLSGFNVANRYLIV 89 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~-~l~~~~i~g~~l~v 89 (124)
.+|++..-.+|||++|...+++.+|+..|.+||.|.++.+.... ++|||+|.++++|+.|.. .++...|+|++|+|
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~---~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK---GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc---ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 34444555899999999999999999999999999999887553 699999999999999777 44556788999999
Q ss_pred EEeecc
Q 033227 90 LYYQQT 95 (124)
Q Consensus 90 ~~~~~~ 95 (124)
.|.++.
T Consensus 298 ~Wg~~~ 303 (377)
T KOG0153|consen 298 KWGRPK 303 (377)
T ss_pred EeCCCc
Confidence 999994
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.5e-11 Score=83.59 Aligned_cols=96 Identities=21% Similarity=0.299 Sum_probs=77.7
Q ss_pred CcccccCCCCCCCC-CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc--CCCCccEEEEEecCHHHHHHHHHHhC
Q 033227 2 ATIPLRKGNARLPP-EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLS 78 (124)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~l~ 78 (124)
+.+..-+|..+... ...++|||+.|...-.|++++.+|.+||.|.++.+.+ |+.++||+||.|.+..+|+.||..|+
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLH 81 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALH 81 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhc
Confidence 33333444443332 3579999999999999999999999999999998876 68889999999999999999999999
Q ss_pred CceeC-C--eEEEEEEeecccc
Q 033227 79 GFNVA-N--RYLIVLYYQQTKM 97 (124)
Q Consensus 79 ~~~i~-g--~~l~v~~~~~~~~ 97 (124)
|.... | ..|.|+|++-.+.
T Consensus 82 gSqTmpGASSSLVVK~ADTdkE 103 (371)
T KOG0146|consen 82 GSQTMPGASSSLVVKFADTDKE 103 (371)
T ss_pred ccccCCCCccceEEEeccchHH
Confidence 97544 4 7789999875543
No 62
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=2e-11 Score=68.29 Aligned_cols=58 Identities=24% Similarity=0.408 Sum_probs=49.5
Q ss_pred HHHHHHHhc----cCCceeEEE-eccC-----CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 32 SEEMYDIFG----KYGAIRQIR-IGSS-----KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 32 ~~~l~~~f~----~~g~i~~~~-~~~~-----~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
+++|+.+|. +||.|..+. ++.+ +.++|++||.|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 456777777 999999885 4432 556999999999999999999999999999999876
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.29 E-value=2.4e-11 Score=87.45 Aligned_cols=78 Identities=22% Similarity=0.459 Sum_probs=70.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHh-ccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIF-GKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f-~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
.+.+||+|||.++.+.+|+.++ ++.|.|.+|.+..| ++++|||.|+|.+++.+++|++.||.+.+.|++|.|.-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 4679999999999999999999 46899999988765 77899999999999999999999999999999999987665
Q ss_pred c
Q 033227 95 T 95 (124)
Q Consensus 95 ~ 95 (124)
.
T Consensus 124 ~ 124 (608)
T KOG4212|consen 124 E 124 (608)
T ss_pred h
Confidence 3
No 64
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.25 E-value=1.7e-11 Score=89.82 Aligned_cols=75 Identities=31% Similarity=0.616 Sum_probs=69.9
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 21 LYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 21 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
|||+||.++++++.|+..|++||.|..|.+..| +.++||+|++|.+.++|.+|+..|||+.|-|+.|+|......
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 999999999999999999999999999988875 677999999999999999999999999999999998876644
No 65
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.7e-11 Score=86.19 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=73.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
.+.|||..|.+.+++++|.-+|+.||.|..|.++++ +.+..||||+|.+.++.++|.-.|++.-|+.++|+|.|+..
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 589999999999999999999999999999999886 55688999999999999999999999999999999999875
Q ss_pred ccc
Q 033227 95 TKM 97 (124)
Q Consensus 95 ~~~ 97 (124)
-..
T Consensus 319 Vsk 321 (479)
T KOG0415|consen 319 VSK 321 (479)
T ss_pred hhh
Confidence 543
No 66
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.23 E-value=7.8e-11 Score=77.22 Aligned_cols=81 Identities=22% Similarity=0.465 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccC-CceeEEEecc---CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKY-GAIRQIRIGS---SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~-g~i~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
......+|+..+|..+.+..+..+|.++ |.+.+.++-+ +|.++|||||+|.+.+.|.-|.+.||++-+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445788999999999999999999988 7777777744 58889999999999999999999999999999999999
Q ss_pred Eeecc
Q 033227 91 YYQQT 95 (124)
Q Consensus 91 ~~~~~ 95 (124)
+.++.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 99887
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.22 E-value=4.1e-11 Score=90.95 Aligned_cols=75 Identities=27% Similarity=0.513 Sum_probs=70.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
+++|||++|+..+++.+|..+|++||.|.+|.++.. ++||||.+-.+++|++|+..|..+.+.++.|+|.|+-.+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~---R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP---RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC---CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 389999999999999999999999999999988744 689999999999999999999999999999999998744
No 68
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.20 E-value=3.4e-10 Score=80.85 Aligned_cols=101 Identities=24% Similarity=0.432 Sum_probs=86.4
Q ss_pred CcEEEEcCC-CCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccc
Q 033227 18 NRVLYVRNL-PFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 18 ~~~l~v~~l-~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 96 (124)
+..|.|.|| +..+|.+.|..+|.-||+|.+|++...++ .-|+|+|++...|+.|+..|+|+.+.|++|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk--d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK--DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC--cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 678888888 55689999999999999999999988764 689999999999999999999999999999999998554
Q ss_pred cc-------------------------------------------cccCcccCHHHHHHHHHHcCCC
Q 033227 97 MS-------------------------------------------KKFDQKKKDDELAKMQEKYGVS 120 (124)
Q Consensus 97 ~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g~~ 120 (124)
.. .+++..++++++..+|.+.|-+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~ 441 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQ 441 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCce
Confidence 33 4466667888888888877654
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.18 E-value=5.2e-11 Score=83.63 Aligned_cols=102 Identities=12% Similarity=0.277 Sum_probs=87.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..++++|++|++.++++.|+.+|.+||.+..+.++++ +.++||+||+|.+.+...+++. ...+.|+|+.+.+..+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 5789999999999999999999999999999999885 5568999999999888888877 35678889888887777
Q ss_pred ccccc--------------cccCcccCHHHHHHHHHHcCC
Q 033227 94 QTKMS--------------KKFDQKKKDDELAKMQEKYGV 119 (124)
Q Consensus 94 ~~~~~--------------~~~~~~~~~~~l~~~~~~~g~ 119 (124)
+.... ..++...+++++...|+++|.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~ 123 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGK 123 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccce
Confidence 66533 457778899999999999994
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.17 E-value=9.4e-11 Score=84.43 Aligned_cols=75 Identities=24% Similarity=0.396 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
...++|+|+|||..+|++.|+.-|.+||.+.+..++..++++| .|.|.+.++|+.|+..|+|..++|+-|+|.|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3468999999999999999999999999999998877777665 89999999999999999999999999999874
No 71
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.14 E-value=1.5e-10 Score=74.69 Aligned_cols=84 Identities=23% Similarity=0.426 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEE-EeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQI-RIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
.+.+..+||+||.+++++..|+..|+.||.+... .++++ +.++|++|+.|++.+.+.+|+..++|..+..+++.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 3446899999999999999999999999997752 44443 5668999999999999999999999999999999999
Q ss_pred Eeeccccc
Q 033227 91 YYQQTKMS 98 (124)
Q Consensus 91 ~~~~~~~~ 98 (124)
++..+...
T Consensus 173 ya~k~~~k 180 (203)
T KOG0131|consen 173 YAFKKDTK 180 (203)
T ss_pred EEEecCCC
Confidence 98866443
No 72
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.13 E-value=1e-09 Score=79.83 Aligned_cols=106 Identities=16% Similarity=0.314 Sum_probs=89.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC-CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS-KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
..+....|.+++||+.+|+++|..+|+.++ |.++.+.+. ++..|-|||+|.+.++++.|++ .+...+..+.|.|.-+
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 445578899999999999999999998875 666777664 8888999999999999999999 5888888999999888
Q ss_pred eccccc-------------------cccCcccCHHHHHHHHHHcCCCC
Q 033227 93 QQTKMS-------------------KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 93 ~~~~~~-------------------~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
...... +.++..++++++.++|+-+.|..
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~ 131 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVP 131 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccc
Confidence 554443 56888999999999998876654
No 73
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.12 E-value=1.4e-10 Score=79.67 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccc
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 96 (124)
..++++|+||.+.++..+|+..|++||++.++.++ ++|+||-|.-.++|..|++.|++..++|++++|..+...-
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 46899999999999999999999999999999998 4699999999999999999999999999999999887653
Q ss_pred c
Q 033227 97 M 97 (124)
Q Consensus 97 ~ 97 (124)
+
T Consensus 152 r 152 (346)
T KOG0109|consen 152 R 152 (346)
T ss_pred c
Confidence 3
No 74
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.06 E-value=1.7e-09 Score=73.56 Aligned_cols=85 Identities=21% Similarity=0.421 Sum_probs=74.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc--CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
.+.|+|.|||..+.+.+|+++|+.||.+..+.+.+ .+.+.|.|-|.|...++|.+|++.|+++.++|++|++....+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 48899999999999999999999999887766655 4777899999999999999999999999999999999988877
Q ss_pred ccccccC
Q 033227 96 KMSKKFD 102 (124)
Q Consensus 96 ~~~~~~~ 102 (124)
.....++
T Consensus 163 ~~~~r~~ 169 (243)
T KOG0533|consen 163 SQSKRLP 169 (243)
T ss_pred ccccccc
Confidence 6654443
No 75
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=5.2e-10 Score=83.08 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
++.+||++|...+.-.+|+.+|++||.|.-.+++.+ +..++|+||++++..+|.+||..|+...++|+.|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 589999999999999999999999999998888864 34478999999999999999999999999999999998875
Q ss_pred cc
Q 033227 95 TK 96 (124)
Q Consensus 95 ~~ 96 (124)
..
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 43
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=3.2e-10 Score=85.44 Aligned_cols=82 Identities=24% Similarity=0.472 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
...+.|+|+|||+..+..+++.+|..||.+..|+++.. +..+|||||+|-+..+|.+|+..|.+.-+.|+.|.+.|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 34689999999999999999999999999999998863 333899999999999999999999988899999999999
Q ss_pred ecccc
Q 033227 93 QQTKM 97 (124)
Q Consensus 93 ~~~~~ 97 (124)
+....
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 87643
No 77
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.03 E-value=3.3e-09 Score=62.67 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=64.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccC--CceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeC----CeEEEE
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKY--GAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVA----NRYLIV 89 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~----g~~l~v 89 (124)
++|.|+|||...+...|.+.+... |....+.++.| +.+.|||||+|.+.+.|....+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999998888543 55667777765 445899999999999999999999998886 477888
Q ss_pred EEeecc
Q 033227 90 LYYQQT 95 (124)
Q Consensus 90 ~~~~~~ 95 (124)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887643
No 78
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=1.2e-10 Score=77.08 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=88.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCC-ccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDT-RGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
.++..++|||.|+...++++.|.++|-+.|+|..+.+..+++. .-||||.|.+..+..-|+..+||..+.++.+.+.+.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3455799999999999999999999999999999998764333 239999999999999999999999999999988875
Q ss_pred eccccccccCcccCHHHHHHHHHHcCCCCC
Q 033227 93 QQTKMSKKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.-. ....++...+++.+...++..+.++.
T Consensus 85 ~G~-shapld~r~~~ei~~~v~s~a~p~~~ 113 (267)
T KOG4454|consen 85 CGN-SHAPLDERVTEEILYEVFSQAGPIEG 113 (267)
T ss_pred cCC-CcchhhhhcchhhheeeecccCCCCC
Confidence 433 34557777888887777777766554
No 79
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=8.9e-10 Score=78.02 Aligned_cols=75 Identities=19% Similarity=0.454 Sum_probs=68.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
++|||..+.++.++.+|+.+|+-||.|..|.+-++ +..+||+|++|.+.++...|+..||-+.++|+.|+|-.+-
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 78999999999999999999999999999998774 3338999999999999999999999999999999986543
No 80
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.98 E-value=2.6e-09 Score=80.86 Aligned_cols=83 Identities=22% Similarity=0.339 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC------CCCccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS------KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRY 86 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 86 (124)
...+..+.+||+||++.++++.|...|..||++..+++++. ...+-|+||.|-++.+|++|++.|+|..+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 33455689999999999999999999999999999888763 222579999999999999999999999999999
Q ss_pred EEEEEeecc
Q 033227 87 LIVLYYQQT 95 (124)
Q Consensus 87 l~v~~~~~~ 95 (124)
+++-|+++-
T Consensus 249 ~K~gWgk~V 257 (877)
T KOG0151|consen 249 MKLGWGKAV 257 (877)
T ss_pred eeecccccc
Confidence 999999643
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.94 E-value=8e-09 Score=72.50 Aligned_cols=83 Identities=23% Similarity=0.372 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeE--------EEeccC--CCCccEEEEEecCHHHHHHHHHHhCCcee
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQ--------IRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNV 82 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i 82 (124)
+.+..++.|||+|||..+|.+++..+|+.+|.|.+ |++.++ |+-+|=|+++|...++...|+..|++..+
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 34556788999999999999999999999999863 566554 55689999999999999999999999999
Q ss_pred CCeEEEEEEeecc
Q 033227 83 ANRYLIVLYYQQT 95 (124)
Q Consensus 83 ~g~~l~v~~~~~~ 95 (124)
.|+.|+|..++-.
T Consensus 209 rg~~~rVerAkfq 221 (382)
T KOG1548|consen 209 RGKKLRVERAKFQ 221 (382)
T ss_pred cCcEEEEehhhhh
Confidence 9999999988743
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=7.8e-09 Score=69.05 Aligned_cols=97 Identities=23% Similarity=0.367 Sum_probs=80.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecccc-
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKM- 97 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~- 97 (124)
..+||++||+.+.+.++..+|..||.+..+.+. .||+||.|.+..+|..|+..+++..+.|..+.+.|+.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 368999999999999999999999999988774 47999999999999999999999999988799999884211
Q ss_pred ---------------c------------cccCcccCHHHHHHHHHHcCCC
Q 033227 98 ---------------S------------KKFDQKKKDDELAKMQEKYGVS 120 (124)
Q Consensus 98 ---------------~------------~~~~~~~~~~~l~~~~~~~g~~ 120 (124)
+ .++.....+.+|+..|.++|..
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~ 126 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEV 126 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCC
Confidence 0 3344445678888888888876
No 83
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.78 E-value=3.4e-08 Score=72.02 Aligned_cols=77 Identities=22% Similarity=0.374 Sum_probs=65.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc---CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS---SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
...|||.|||++++..+|+++|..||.|....+.. .....+||||+|.+...++.|+.+ +-..++++++.|.-.++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 35699999999999999999999999999876543 233348999999999999999996 68889999999988765
Q ss_pred c
Q 033227 95 T 95 (124)
Q Consensus 95 ~ 95 (124)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 4
No 84
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.72 E-value=4.3e-08 Score=69.11 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=70.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
...|||++||..+++.+++.+|.+||.|..+.++.| ...++|+||.|.+.+++..++. ..-+.+.++.+.|..+.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 459999999999999999999999999998888776 3448999999999999998877 577899999999999998
Q ss_pred cccc
Q 033227 95 TKMS 98 (124)
Q Consensus 95 ~~~~ 98 (124)
+...
T Consensus 176 k~~~ 179 (311)
T KOG4205|consen 176 KEVM 179 (311)
T ss_pred hhhc
Confidence 8665
No 85
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.71 E-value=6.8e-09 Score=76.49 Aligned_cols=103 Identities=21% Similarity=0.338 Sum_probs=90.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
.+++|+..++...+..+|.++|+.+|.|..|.++.| +.++|.++|+|.+.++...|+. |.|..+.|.+|.|.....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHH
Confidence 478888889989999999999999999999999876 4558999999999999999996 899999999999988775
Q ss_pred cccc----------------------cccCcccCHHHHHHHHHHcCCCC
Q 033227 95 TKMS----------------------KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 95 ~~~~----------------------~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+.. +++..+++++++..+|++||..+
T Consensus 258 eknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie 306 (549)
T KOG0147|consen 258 EKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIE 306 (549)
T ss_pred HHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccce
Confidence 5443 67888999999999999998764
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.64 E-value=6.9e-08 Score=65.45 Aligned_cols=81 Identities=16% Similarity=0.274 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc---CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS---SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
+....+||++-|..+++++.|-..|.+|..-...++++ .++++||+||.|.+..++..|+..|+|..++.++|+..-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 44568999999999999999999999998876666655 477899999999999999999999999999999988765
Q ss_pred eecc
Q 033227 92 YQQT 95 (124)
Q Consensus 92 ~~~~ 95 (124)
+.-+
T Consensus 267 S~wk 270 (290)
T KOG0226|consen 267 SEWK 270 (290)
T ss_pred hhHH
Confidence 5433
No 87
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=4.2e-08 Score=72.55 Aligned_cols=69 Identities=36% Similarity=0.602 Sum_probs=62.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
..+|+|-|||..+++++|+.+|+.||+|..+..- ...++.+||+|=+..+|++|+++|++..+.|+.++
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t--~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET--PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc--cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4799999999999999999999999999986553 34468999999999999999999999999998887
No 88
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.54 E-value=2.5e-07 Score=62.91 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=70.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
....+.+||+|+...++...+..-|+.||.+..+.+..+ ++++||+|++|.+.+..+.++. |++..+.|+.+.+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 445689999999999999999999999999987766654 4568999999999999999999 999999999999988
Q ss_pred eecc
Q 033227 92 YQQT 95 (124)
Q Consensus 92 ~~~~ 95 (124)
..-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7643
No 89
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.47 E-value=2.4e-06 Score=57.08 Aligned_cols=77 Identities=25% Similarity=0.494 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEee
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVA-NRYLIVLYYQ 93 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-g~~l~v~~~~ 93 (124)
.+.+.++++.|||..++...+..+|.+|+.-..++++... .+.|||+|.+...|..|...+.+..+. .+.+.|.+++
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~--~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR--SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC--CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 4557899999999999999999999999999999887543 489999999999999999999999988 7888888764
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.38 E-value=2.7e-06 Score=48.62 Aligned_cols=71 Identities=23% Similarity=0.368 Sum_probs=47.1
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhccCCc-eeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 19 RVLYVRNLPFNISSEE----MYDIFGKYGA-IRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~----l~~~f~~~g~-i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..|+|.|||.+..... |+.+...+|. |..|. .+.|++-|.+.+.|.+|.+.|+|-.+.|.+|.|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4689999999888765 4555556654 44432 3689999999999999999999999999999999976
Q ss_pred ccc
Q 033227 94 QTK 96 (124)
Q Consensus 94 ~~~ 96 (124)
..+
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 543
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.35 E-value=8.5e-07 Score=65.86 Aligned_cols=84 Identities=19% Similarity=0.444 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
+.....++|++||...++..+.+++..||.+....++.+ +.++||||.+|.+......|+..|||..+.++.+.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 444689999999999999999999999999987766653 56799999999999999999999999999999999988
Q ss_pred eeccccc
Q 033227 92 YQQTKMS 98 (124)
Q Consensus 92 ~~~~~~~ 98 (124)
+-.....
T Consensus 366 A~~g~~~ 372 (500)
T KOG0120|consen 366 AIVGASN 372 (500)
T ss_pred hhccchh
Confidence 8766544
No 92
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.32 E-value=9.5e-07 Score=59.13 Aligned_cols=65 Identities=25% Similarity=0.437 Sum_probs=56.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeC
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVA 83 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~ 83 (124)
..+|||.||.++++|+.|+.+|+.|.....+++...+ ....+|++|...+.|..|+..|+|..+.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 4799999999999999999999999887777765332 3479999999999999999999997764
No 93
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.27 E-value=5.2e-06 Score=49.92 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=39.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 80 (124)
+..|.|.+++..++.++|+..|++||.|.+|.+.... ..|+|-|.+.+.|+.|+..+.-.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~---~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD---TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC---CEEEEEECCcchHHHHHHHHHhc
Confidence 4678999999999999999999999999998886532 48999999999999999876643
No 94
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=5.6e-06 Score=61.90 Aligned_cols=89 Identities=24% Similarity=0.356 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCH------HHHHHHhccCCceeEEEecc--CCCCccEEEEEecCHHHHHHHHHHhCCceeC-CeE
Q 033227 16 EVNRVLYVRNLPFNISS------EEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVA-NRY 86 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~------~~l~~~f~~~g~i~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-g~~ 86 (124)
.....|+|.|+|-.-.. ..|..+|+++|.+..+.++. .+.++||.|++|.+..+|+.|++.|||..++ .+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 45689999999854332 34678899999999988875 3667999999999999999999999999998 688
Q ss_pred EEEEEeeccccccccCcc
Q 033227 87 LIVLYYQQTKMSKKFDQK 104 (124)
Q Consensus 87 l~v~~~~~~~~~~~~~~~ 104 (124)
+.|...+.-+++...+..
T Consensus 136 f~v~~f~d~eky~s~~de 153 (698)
T KOG2314|consen 136 FFVRLFKDFEKYESISDE 153 (698)
T ss_pred EEeehhhhHHHhcCCccc
Confidence 888877766666544443
No 95
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.22 E-value=8.7e-06 Score=59.87 Aligned_cols=78 Identities=24% Similarity=0.429 Sum_probs=62.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeE-EEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQ-IRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
....|.+++||+.+++++|.++|+..--+.. |.++.+ +.+.|.|||+|.+.+.|++|+.. |...|..+.|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 4689999999999999999999986544443 444443 44579999999999999999984 7788888888887655
Q ss_pred cc
Q 033227 94 QT 95 (124)
Q Consensus 94 ~~ 95 (124)
..
T Consensus 181 ~~ 182 (510)
T KOG4211|consen 181 RA 182 (510)
T ss_pred HH
Confidence 33
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.18 E-value=9.7e-05 Score=53.08 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 16 EVNRVLYVRNLPFN-ISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 16 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
..+..+.|.+|... ++.+.|..+|=.||.|.+|++++++ .|.|.|++.+....++|+..||+..+.|.+|.|..++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 44689999999755 5566789999999999999999765 47999999999999999999999999999999998875
Q ss_pred ccc
Q 033227 95 TKM 97 (124)
Q Consensus 95 ~~~ 97 (124)
.-.
T Consensus 363 ~~v 365 (494)
T KOG1456|consen 363 NFV 365 (494)
T ss_pred ccc
Confidence 533
No 97
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.12 E-value=5e-05 Score=53.85 Aligned_cols=85 Identities=15% Similarity=0.314 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCC----CCCCH-------HHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCC
Q 033227 16 EVNRVLYVRNLP----FNISS-------EEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVAN 84 (124)
Q Consensus 16 ~~~~~l~v~~l~----~~~~~-------~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g 84 (124)
...++|.+.|+- ...+. ++|.+-..+||.|..|.+. +..+.|.+-|.|.+.+.|..|+..|+|..++|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg 341 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG 341 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-ccCCCceeEEEeCChHHHHHHHHHhcCeeecc
Confidence 335889999872 12231 3456668899999987664 55567999999999999999999999999999
Q ss_pred eEEEEEEeecccccccc
Q 033227 85 RYLIVLYYQQTKMSKKF 101 (124)
Q Consensus 85 ~~l~v~~~~~~~~~~~~ 101 (124)
+.|.-....-...+.-.
T Consensus 342 Rql~A~i~DG~t~~~~e 358 (382)
T KOG1548|consen 342 RQLTASIWDGKTKFQTE 358 (382)
T ss_pred eEEEEEEeCCcceeeee
Confidence 99988887766555443
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.10 E-value=1.3e-05 Score=56.84 Aligned_cols=77 Identities=26% Similarity=0.494 Sum_probs=61.5
Q ss_pred CcEEEEcCCCCCCCHHH------HHHHhccCCceeEEEeccCC----CCccEE--EEEecCHHHHHHHHHHhCCceeCCe
Q 033227 18 NRVLYVRNLPFNISSEE------MYDIFGKYGAIRQIRIGSSK----DTRGTA--FVVYEDIYDAKTAVDHLSGFNVANR 85 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~------l~~~f~~~g~i~~~~~~~~~----~~~g~~--fv~f~~~~~a~~a~~~l~~~~i~g~ 85 (124)
..-+||-+||+.+..++ -.++|.+||.|..|.+.+.. ...+++ +|.|.+.++|.+|+...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 46789999988766554 36789999999988776421 112333 9999999999999999999999999
Q ss_pred EEEEEEeec
Q 033227 86 YLIVLYYQQ 94 (124)
Q Consensus 86 ~l~v~~~~~ 94 (124)
.|+..|..-
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999998753
No 99
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=98.00 E-value=7.8e-05 Score=42.60 Aligned_cols=61 Identities=21% Similarity=0.422 Sum_probs=45.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCC
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSG 79 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 79 (124)
+.|...+..+|+ +|..+...+|..+|++||.|. |.++.+ .-|||...+.+.+..++..+..
T Consensus 4 ~~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d----TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 4 PQPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND----TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp ---SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT----TEEEEEECCCHHHHHHHHHHTT
T ss_pred CCCCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC----CcEEEEeecHHHHHHHHHHhcc
Confidence 345556788887 999999999999999999976 777755 3799999999999999988763
No 100
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.97 E-value=8.2e-06 Score=54.73 Aligned_cols=72 Identities=29% Similarity=0.412 Sum_probs=62.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
....+.+.+.+++..+.+.+|...|.++|.+.+... ..+++||+|+..+++..|+..|++..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-----hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 445689999999999999999999999999854433 247999999999999999999999999999999944
No 101
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.97 E-value=4.6e-05 Score=55.16 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=62.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCC-eEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVAN-RYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g-~~l~v~~~~~ 94 (124)
..++++.|+|+.+++++++..|.+-|......... ++.+-++++.+.+.+.|..|+..++.+.+.+ .-++|.|++.
T Consensus 414 satlHlsnip~svsee~lk~~f~~~g~~vkafkff-~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcCCceEEeeeec-CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 56999999999999999999998777654332221 2334699999999999999999999999984 6899999875
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.92 E-value=0.00012 Score=52.66 Aligned_cols=79 Identities=24% Similarity=0.354 Sum_probs=64.2
Q ss_pred CcEEEEcCC--CCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEee
Q 033227 18 NRVLYVRNL--PFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVAN--RYLIVLYYQ 93 (124)
Q Consensus 18 ~~~l~v~~l--~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~~~~ 93 (124)
+..|.++=| -.-++-+-|+.+..+.|.|.+|.+... +---|.|+|.+.+.|++|...|||..|.. -.|+|.|++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 455555544 345778889999999999999987643 33579999999999999999999998873 789999999
Q ss_pred ccccc
Q 033227 94 QTKMS 98 (124)
Q Consensus 94 ~~~~~ 98 (124)
|.+..
T Consensus 198 P~rln 202 (494)
T KOG1456|consen 198 PTRLN 202 (494)
T ss_pred cceee
Confidence 88654
No 103
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.84 E-value=1e-05 Score=55.08 Aligned_cols=69 Identities=17% Similarity=0.376 Sum_probs=59.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCC---------------ccEEEEEecCHHHHHHHHHHhCCcee
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDT---------------RGTAFVVYEDIYDAKTAVDHLSGFNV 82 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---------------~g~~fv~f~~~~~a~~a~~~l~~~~i 82 (124)
.-.||+++||+.+...-|+++|+.||.|-+|.+.....+ -.-|.|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 368999999999999999999999999999988653111 13567999999999999999999999
Q ss_pred CCeE
Q 033227 83 ANRY 86 (124)
Q Consensus 83 ~g~~ 86 (124)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9865
No 104
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.80 E-value=8.3e-05 Score=53.59 Aligned_cols=78 Identities=22% Similarity=0.435 Sum_probs=62.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCc-eeE--EEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGA-IRQ--IRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~--~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
+......|.+++||...+-++|..+|..|.. |.. ++++.+ ++..|-|||+|.+.+.|.+|....++....++.|.
T Consensus 276 ~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 276 PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 3344678999999999999999999988755 333 666654 55579999999999999999998887776688887
Q ss_pred EEE
Q 033227 89 VLY 91 (124)
Q Consensus 89 v~~ 91 (124)
|..
T Consensus 356 vfp 358 (508)
T KOG1365|consen 356 VFP 358 (508)
T ss_pred Eee
Confidence 754
No 105
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.79 E-value=4.6e-05 Score=54.14 Aligned_cols=80 Identities=25% Similarity=0.395 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeE--------EEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQ--------IRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANR 85 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 85 (124)
...+|||-+||..++++++..+|.++|.|.. |.+.++ ...++-|.|.|.+...|++|+..+++..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 3579999999999999999999999988753 333333 44589999999999999999999999999999
Q ss_pred EEEEEEeeccc
Q 033227 86 YLIVLYYQQTK 96 (124)
Q Consensus 86 ~l~v~~~~~~~ 96 (124)
.|+|..+....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998877554
No 106
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.77 E-value=2.9e-05 Score=56.52 Aligned_cols=98 Identities=22% Similarity=0.297 Sum_probs=76.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccC--CceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCc-eeCCeEEEEEEeecc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKY--GAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF-NVANRYLIVLYYQQT 95 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~-~i~g~~l~v~~~~~~ 95 (124)
..+|++||.+.++..+|..+|... |.-... ++. .||+|+++.+...|.+|++.++|. .+.|+++.+.+.-++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~k----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LVK----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-eee----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 468999999999999999998643 111111 111 379999999999999999999984 678999999998877
Q ss_pred ccc------cccCcccCHHHHHHHHHHcCCCC
Q 033227 96 KMS------KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 96 ~~~------~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
+.+ ++++....++.+..+...||.-+
T Consensus 77 kqrsrk~Qirnippql~wevld~Ll~qyg~ve 108 (584)
T KOG2193|consen 77 KQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVE 108 (584)
T ss_pred HHHhhhhhHhcCCHHHHHHHHHHHHhccCCHh
Confidence 655 56677777888888888877544
No 107
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.74 E-value=0.00014 Score=38.29 Aligned_cols=52 Identities=21% Similarity=0.440 Sum_probs=41.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHH
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAV 74 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 74 (124)
+.|-|.|.++...+. +...|..||.|..+.+. ....+.++.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 567888998777644 55588899999998875 22469999999999999984
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.0011 Score=49.50 Aligned_cols=63 Identities=24% Similarity=0.583 Sum_probs=48.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCC------CCcc---EEEEEecCHHHHHHHHHHhC
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSK------DTRG---TAFVVYEDIYDAKTAVDHLS 78 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~------~~~g---~~fv~f~~~~~a~~a~~~l~ 78 (124)
+.-.++|||++||+.++|+.|...|..||.+. +.|.... ..+| |+|+.|.+..+...-+.++.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 33458999999999999999999999999865 5555211 1145 99999999887776655443
No 109
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.72 E-value=5.1e-05 Score=57.22 Aligned_cols=79 Identities=16% Similarity=0.324 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcc-CCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeC---CeEEEEEE
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGK-YGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVA---NRYLIVLY 91 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~---g~~l~v~~ 91 (124)
..++.|||.||-.-.|..+|+.++.. .|.|... |+ .+-+.+|||.|.+.++|.+...+|||..|- ++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 44689999999999999999999985 4545544 44 223579999999999999999999998876 58888888
Q ss_pred eecccc
Q 033227 92 YQQTKM 97 (124)
Q Consensus 92 ~~~~~~ 97 (124)
......
T Consensus 519 ~~~del 524 (718)
T KOG2416|consen 519 VRADEL 524 (718)
T ss_pred cchhHH
Confidence 775543
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.71 E-value=0.00018 Score=53.77 Aligned_cols=62 Identities=29% Similarity=0.555 Sum_probs=52.3
Q ss_pred HHHHHhccCCceeEEEeccC------CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 34 EMYDIFGKYGAIRQIRIGSS------KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 34 ~l~~~f~~~g~i~~~~~~~~------~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
+++.-++.||.|..|.+.++ .-+.|..||+|.+.++++.|..+|+|.++.++.+...|+...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 35555779999999988764 122578899999999999999999999999999999998754
No 111
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.58 E-value=8e-05 Score=52.34 Aligned_cols=79 Identities=19% Similarity=0.348 Sum_probs=68.1
Q ss_pred CcEEE-EcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 18 NRVLY-VRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 18 ~~~l~-v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..+++ +.+++..+++++|+..|..+|.|..+++..+ +.++|++++.|.+...+..++.. +...+.++++.+.+.+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34555 9999999999999999999999999988764 45589999999999999999887 7888999999999988
Q ss_pred cccc
Q 033227 94 QTKM 97 (124)
Q Consensus 94 ~~~~ 97 (124)
+...
T Consensus 263 ~~~~ 266 (285)
T KOG4210|consen 263 PRPK 266 (285)
T ss_pred CCcc
Confidence 7643
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.56 E-value=0.00038 Score=53.72 Aligned_cols=73 Identities=29% Similarity=0.500 Sum_probs=61.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeE-EEe--ccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQ-IRI--GSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~--~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
+.|-+.|+|+.++.++|.++|.-|-.+-. |.+ ..++...|.|.|.|.+.++|.+|...|++..|..+.+++..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 58889999999999999999999866542 333 33567789999999999999999999999999999887753
No 113
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.56 E-value=0.00097 Score=39.72 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=51.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEec-c---------CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeE-
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIG-S---------SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRY- 86 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~-~---------~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~- 86 (124)
.+-|.|-|.|+.. ...+...|++||.|.+..-. . ......+-.+.|++..+|.+|+. -||..+.|..
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 4668888999884 46788899999998876411 1 11224689999999999999999 5999999854
Q ss_pred EEEEEeec
Q 033227 87 LIVLYYQQ 94 (124)
Q Consensus 87 l~v~~~~~ 94 (124)
+-|.+.++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 44666543
No 114
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.55 E-value=0.00014 Score=51.87 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=59.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCce--eEEEec---cCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAI--RQIRIG---SSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i--~~~~~~---~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
.-.+||+||-|.+|+.+|.+.+...|.- .++++. .+++++|||++...+..+..+-++.|-...|+|+.-.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 4689999999999999999888776653 333433 3588999999999999999999999999999986544443
No 115
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.47 E-value=0.0011 Score=43.60 Aligned_cols=62 Identities=23% Similarity=0.216 Sum_probs=56.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeC
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVA 83 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~ 83 (124)
...|.|++||+..++++|+.-..+-|.++...+.+| |++.|+|...++-+.|+..|+...+.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----cceeeeeeehhhHHHHHHhhcccccc
Confidence 478999999999999999999999999999888777 48999999999999999999976554
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0018 Score=48.36 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=55.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhc-cCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHH
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFG-KYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDH 76 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~ 76 (124)
.+-+..++|||++||.-++-.+|-.++. -||.|+.+.|..| +..+|-|=|.|++-.+-.+||.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3445579999999999999999999997 8999999998876 55689999999999999999873
No 117
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.30 E-value=0.00044 Score=54.52 Aligned_cols=81 Identities=20% Similarity=0.205 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEe
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVAN--RYLIVLYY 92 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~~~ 92 (124)
....+.+++++|++.+....|...|..||.|..|.+.. ...|+++.|.+...++.|+..|.|..+++ +++.|.++
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc---CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 33468999999999999999999999999999887642 23699999999999999999999999996 78999998
Q ss_pred eccccc
Q 033227 93 QQTKMS 98 (124)
Q Consensus 93 ~~~~~~ 98 (124)
.+.-..
T Consensus 529 ~~~~~~ 534 (975)
T KOG0112|consen 529 SPPGAT 534 (975)
T ss_pred cCCCCC
Confidence 866544
No 118
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.26 E-value=0.00042 Score=50.61 Aligned_cols=64 Identities=34% Similarity=0.527 Sum_probs=54.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC------C----------CCccEEEEEecCHHHHHHHHHHhCCc
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS------K----------DTRGTAFVVYEDIYDAKTAVDHLSGF 80 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~----------~~~g~~fv~f~~~~~a~~a~~~l~~~ 80 (124)
.+++|.+.|||.+-.-+-|.++|..+|.|..|++-.. . .++-+|+|+|...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 4689999999999888999999999999999987532 0 12568999999999999999988653
No 119
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.23 E-value=0.0031 Score=39.92 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=44.4
Q ss_pred HHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecccc
Q 033227 34 EMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKM 97 (124)
Q Consensus 34 ~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~ 97 (124)
+|...|..||.+.-++++. +.-+|+|.+.++|.+|+. ++|.++.|+.++|....+...
T Consensus 52 ~ll~~~~~~GevvLvRfv~-----~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG-----DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET-----TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeC-----CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 5677788999988777763 368999999999999999 899999999999998776654
No 120
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.21 E-value=0.0017 Score=42.66 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=51.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhcc-CCce---eEEEeccC-----CCCccEEEEEecCHHHHHHHHHHhCCceeC---
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGK-YGAI---RQIRIGSS-----KDTRGTAFVVYEDIYDAKTAVDHLSGFNVA--- 83 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i---~~~~~~~~-----~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~--- 83 (124)
..+..|.|++||+..+++++.+.+.+ ++.- .++.-... ...-+-|++.|.+.+++......++|+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34679999999999999998887766 6654 22221111 112468999999999999999999997765
Q ss_pred C--eEEEEEEeecccc
Q 033227 84 N--RYLIVLYYQQTKM 97 (124)
Q Consensus 84 g--~~l~v~~~~~~~~ 97 (124)
| ....|.++.-.+.
T Consensus 85 g~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKV 100 (176)
T ss_dssp S-EEEEEEEE-SS---
T ss_pred CCCcceeEEEcchhcc
Confidence 2 4667777775443
No 121
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.20 E-value=0.017 Score=35.00 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=55.6
Q ss_pred CCCCcEEEEcCCCCCCCH-HHHHHHhccC-CceeEEEeccCCC-CccEEEEEecCHHHHHHHHHHhCCceeC---CeEEE
Q 033227 15 PEVNRVLYVRNLPFNISS-EEMYDIFGKY-GAIRQIRIGSSKD-TRGTAFVVYEDIYDAKTAVDHLSGFNVA---NRYLI 88 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~-~~l~~~f~~~-g~i~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~~~~i~---g~~l~ 88 (124)
...+..+.|-..|+..+. +.|..+.+.+ ..|..+++++++. ++-.+++.|.+..+|......+||..+. ...++
T Consensus 9 ~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Ch 88 (110)
T PF07576_consen 9 DERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCH 88 (110)
T ss_pred CCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeE
Confidence 333455666566666555 4555555554 3467788888865 3667899999999999999999998766 35566
Q ss_pred EEEeec
Q 033227 89 VLYYQQ 94 (124)
Q Consensus 89 v~~~~~ 94 (124)
|-|...
T Consensus 89 vvfV~~ 94 (110)
T PF07576_consen 89 VVFVKS 94 (110)
T ss_pred EEEEEE
Confidence 666543
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.05 E-value=0.00051 Score=53.85 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=64.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc--CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
...++|+|.|+..|.+.++.++..+|.+..+.++. .++.+|.+++.|.+..++..+....+...+...-+.+..+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 46899999999999999999999999999887664 577789999999999999999888777666666666666443
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.05 E-value=0.0017 Score=47.08 Aligned_cols=74 Identities=26% Similarity=0.381 Sum_probs=57.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC-C-----CCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS-K-----DTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~-----~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
..|.|.||.+.++.++++.+|.-.|.|.++.|+.. . .....|||.|.+...+..|-. |-++.+-++.|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 48999999999999999999999999999988752 1 114699999999888887765 6666666655555443
Q ss_pred e
Q 033227 93 Q 93 (124)
Q Consensus 93 ~ 93 (124)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 124
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.03 E-value=0.0049 Score=33.39 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=43.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccC---CceeEEEeccCCCCccEEEEEecCHHHHHHHHHHh
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKY---GAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHL 77 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 77 (124)
...|+|+|+.. .+.++++.+|..| ....+|.|+-|. -|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC----cEEEEECCHHHHHHHHHcC
Confidence 46899999964 5668899999988 224568888663 5889999999999998754
No 125
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.03 E-value=0.00025 Score=55.80 Aligned_cols=105 Identities=19% Similarity=0.201 Sum_probs=83.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
+++|+++|++..+++.+|+..|..+|.+..|.+... ++...|+|+.|-+...+..|...+.+..|....+++-+..++
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~k 451 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPK 451 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccccc
Confidence 489999999999999999999999999999887653 445679999999999999999999998887656666555321
Q ss_pred cc------ccccCcccCHHHHHHHHHHcCCCCC
Q 033227 96 KM------SKKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 96 ~~------~~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.. .+.+..-.....+.++|..||....
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~ 484 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRI 484 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCccee
Confidence 11 1445556777889999999987643
No 126
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.0028 Score=47.65 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=52.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHh-ccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeC----CeEEEEE
Q 033227 19 RVLYVRNLPFNISSEEMYDIF-GKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVA----NRYLIVL 90 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f-~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~----g~~l~v~ 90 (124)
+++.|.|+|...|..-|.+.- ...|.-..+.++.| +.+.|||||.|.+.+++..+.+++||..|. .+.+.+.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 344445555444444333332 23455566777664 455799999999999999999999998765 4778888
Q ss_pred Eeecc
Q 033227 91 YYQQT 95 (124)
Q Consensus 91 ~~~~~ 95 (124)
|++-.
T Consensus 469 YArIQ 473 (549)
T KOG4660|consen 469 YARIQ 473 (549)
T ss_pred hhhhh
Confidence 87754
No 127
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.67 E-value=0.021 Score=41.64 Aligned_cols=58 Identities=22% Similarity=0.399 Sum_probs=46.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCc----eeEEEecc--CCCCccEEEEEecCHHHHHHHHHH
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGA----IRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDH 76 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~----i~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~ 76 (124)
-.|..++||.++++.++..+|.+-.. ...+.++. |++..|-||+.|...++|+.|+..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 56778899999999999999974322 33455554 566689999999999999999874
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.53 E-value=0.00033 Score=54.84 Aligned_cols=94 Identities=23% Similarity=0.267 Sum_probs=73.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc---CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS---SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
.++|++||+..+.+.+|...|..+|.+..+.+.- .++-+|+|++.|-..+++.+|+...++..+ | +..
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g--------K~~ 738 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G--------KIS 738 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h--------hhh
Confidence 5789999999999999999999999988765542 355589999999999999999996554433 3 222
Q ss_pred ccccccCcccCHHHHHHHHHHcCCCC
Q 033227 96 KMSKKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 96 ~~~~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
-...+.+...++++++.++..+|...
T Consensus 739 v~i~g~pf~gt~e~~k~l~~~~gn~~ 764 (881)
T KOG0128|consen 739 VAISGPPFQGTKEELKSLASKTGNVT 764 (881)
T ss_pred hheeCCCCCCchHHHHhhccccCCcc
Confidence 33466778888899999888877654
No 129
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.44 E-value=0.018 Score=40.58 Aligned_cols=63 Identities=25% Similarity=0.332 Sum_probs=50.7
Q ss_pred HHHHHHhccCCceeEEEeccCC----CCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 33 EEMYDIFGKYGAIRQIRIGSSK----DTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 33 ~~l~~~f~~~g~i~~~~~~~~~----~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
+++.+-+++||.|..|.+.... +..---||+|...++|.+|+--|||..++|+.++-.|+.-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 4567778999999988775431 11235799999999999999999999999999998887644
No 130
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.39 E-value=0.0018 Score=44.35 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=49.3
Q ss_pred HHHHHhc-cCCceeEEEecc--CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccc
Q 033227 34 EMYDIFG-KYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 34 ~l~~~f~-~~g~i~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 96 (124)
++...++ +||.|.++.+-. .....|-++|.|...++|++|+..||+-.+.|++|...+..-..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 3444444 899998875432 12336889999999999999999999999999999998877543
No 131
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.27 E-value=0.026 Score=37.33 Aligned_cols=63 Identities=25% Similarity=0.237 Sum_probs=45.3
Q ss_pred CHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhC--CceeCCeEEEEEEeeccc
Q 033227 31 SSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLS--GFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 31 ~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~i~g~~l~v~~~~~~~ 96 (124)
....|+.+|..++.+........ -+-..|.|.+.+.|.+|...|+ +..+.|..+++.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 34678999999998777655433 3578999999999999999999 899999999999996554
No 132
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.25 E-value=0.0064 Score=41.82 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=51.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc--CCCCccEEEEEecCHHHHHHHHHHhC
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLS 78 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~l~ 78 (124)
..|||.||...+..+.+...|+.||+|....+.. .++..+-++|.|.+.-.|..|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 6899999999999999999999999998754443 35556889999999999999999774
No 133
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.24 E-value=0.046 Score=40.55 Aligned_cols=76 Identities=20% Similarity=0.330 Sum_probs=61.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccC-CceeEEEeccCCCC-ccEEEEEecCHHHHHHHHHHhCCceeCC---eEEEEEEe
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKY-GAIRQIRIGSSKDT-RGTAFVVYEDIYDAKTAVDHLSGFNVAN---RYLIVLYY 92 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~~i~g---~~l~v~~~ 92 (124)
++.|.|-.+|-.++..+|..++..+ ..|..+++++|+.. +-..++.|.+..+|......+||..+.. -.+++-|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V 153 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYV 153 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEE
Confidence 7899999999999999998888765 44788999998766 4567899999999999999999987763 34444443
Q ss_pred e
Q 033227 93 Q 93 (124)
Q Consensus 93 ~ 93 (124)
.
T Consensus 154 ~ 154 (493)
T KOG0804|consen 154 D 154 (493)
T ss_pred E
Confidence 3
No 134
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.92 E-value=0.094 Score=33.25 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=51.4
Q ss_pred CcEEEEcCCCCCC----CHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 18 NRVLYVRNLPFNI----SSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 18 ~~~l~v~~l~~~~----~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
=.+|.|+=|..++ +..++..-++.||+|.++-+. ++.-|.|.|.+..+|=.|+.+++. ...|..+.+.|-.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 3566677555443 223455556799999987663 245799999999999999998886 5667888888744
No 135
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.84 E-value=0.013 Score=45.64 Aligned_cols=84 Identities=21% Similarity=0.170 Sum_probs=62.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCcee-EEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIR-QIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~-~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
+.|.+.+..|||..||..+++..+..+|...-.|. .|.+-+. ...++.|||.|...+.+..|..--+.+.+..+.|+
T Consensus 428 p~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 428 PFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEE
Confidence 34556689999999999999999999997654444 4776653 33368999999998888777664455666678888
Q ss_pred EEEeecc
Q 033227 89 VLYYQQT 95 (124)
Q Consensus 89 v~~~~~~ 95 (124)
|.-....
T Consensus 508 v~si~~~ 514 (944)
T KOG4307|consen 508 VDSIADY 514 (944)
T ss_pred eechhhH
Confidence 8765544
No 136
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.47 E-value=0.011 Score=43.89 Aligned_cols=74 Identities=20% Similarity=0.382 Sum_probs=57.7
Q ss_pred cEEEEcCCCCCC-CHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccc
Q 033227 19 RVLYVRNLPFNI-SSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 19 ~~l~v~~l~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 96 (124)
+.+-+...|+.. +..+|..-|++||.|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|-.+..
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 344444445443 44678889999999999887544 3579999999999988877 69999999999999999843
No 137
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.72 E-value=0.19 Score=35.62 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=48.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRY 86 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 86 (124)
.=|-|-++|+... ..+...|++||.|...... .+..+-+|.|.++.+|++|+. .+|.-|+|..
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 4556667777655 4567789999998865543 233689999999999999999 5998888754
No 138
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.49 E-value=0.38 Score=26.82 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHhccCCcee-----EEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 28 FNISSEEMYDIFGKYGAIR-----QIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 28 ~~~~~~~l~~~f~~~g~i~-----~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
..++..+|..++..-+.+. .|.+. ..|+|++... +.|..++..|++..+.|+.++|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4567778888876654443 45554 2489999885 5888899999999999999998754
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.42 E-value=0.013 Score=41.72 Aligned_cols=78 Identities=26% Similarity=0.509 Sum_probs=58.5
Q ss_pred CcEEEEcCCCCCCCHHHH---HHHhccCCceeEEEeccCCC--C----ccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 18 NRVLYVRNLPFNISSEEM---YDIFGKYGAIRQIRIGSSKD--T----RGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l---~~~f~~~g~i~~~~~~~~~~--~----~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
.+.+||-+|++...+..+ .++|.+||.|..|....+.. + ..-++|.|...++|..|+...+|+..+|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 467788888877655443 45688999999887765431 1 23479999999999999999999999998877
Q ss_pred EEEeecc
Q 033227 89 VLYYQQT 95 (124)
Q Consensus 89 v~~~~~~ 95 (124)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 6665543
No 140
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.41 E-value=0.036 Score=44.08 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=56.9
Q ss_pred CCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEEEeeccccc
Q 033227 27 PFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVA--NRYLIVLYYQQTKMS 98 (124)
Q Consensus 27 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~--g~~l~v~~~~~~~~~ 98 (124)
+-..+...|..+|..||.+......++- ..+.|.|.+.+.|..|+.+|+|..+. |-+.+|.+++....+
T Consensus 307 ~v~~tSssL~~l~s~yg~v~s~wtlr~~---N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ 377 (1007)
T KOG4574|consen 307 AVNLTSSSLATLCSDYGSVASAWTLRDL---NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMY 377 (1007)
T ss_pred cccchHHHHHHHHHhhcchhhheecccc---cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccc
Confidence 3345667799999999999887665543 58999999999999999999997655 888999999977766
No 141
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.24 E-value=0.24 Score=37.99 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=48.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcc--CCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCC--ceeCCeEE
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGK--YGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSG--FNVANRYL 87 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~i~g~~l 87 (124)
++|.++-||+.+..++++.+|.. +..+..|.+-.. .-=||+|.+..+|+.|.+.|.. ..|.|++|
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 67888899999999999999963 555555655322 2358999999999999998774 34556554
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=92.60 E-value=0.003 Score=46.39 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=65.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecccc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKM 97 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~ 97 (124)
.+.+-|+|+|+...++-|..++..||.+..+..+....-.-..-++|.+.+.+..|+..++|..+....+++.|-.....
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhh
Confidence 47789999999999999999999999999886554221123455788899999999999999999999999988765543
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.11 E-value=0.22 Score=35.28 Aligned_cols=105 Identities=16% Similarity=0.078 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc---CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS---SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..++.|++++...+.+.+...++..+|......+.. ...+++++.+.|.+.+.+..|+.........+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 467889999998888887777888888655443322 34558999999999999999999544444443322222111
Q ss_pred ccc--------c-----------ccccCcccCHHHHHHHHHHcCCCC
Q 033227 94 QTK--------M-----------SKKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 94 ~~~--------~-----------~~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
... + ..+++...+.++|...|..+|-..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~ 213 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEIT 213 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcce
Confidence 111 1 155677778888776665555443
No 144
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.85 E-value=0.43 Score=35.27 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=47.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCc-eeEEEeccCCCCccEEEEEecCHHHHHHHHHH
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGA-IRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDH 76 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 76 (124)
..+.|-|.++|....-++|...|..|+. -..|.|+.+. ++|..|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc----eeEEeecchHHHHHHhhc
Confidence 3589999999999888999999999866 4568887664 899999999999999884
No 145
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=91.61 E-value=0.68 Score=32.80 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=38.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCcee-EEEeccCCCCccEEEEEecCHH
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIR-QIRIGSSKDTRGTAFVVYEDIY 68 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~g~~fv~f~~~~ 68 (124)
+..+-|+++||+.++.-.+|+..+.+.+.+. ++.| .+ ..|-||+-|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--kg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--KG-HFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEee--ec-CCcceeEecCCcc
Confidence 3357899999999999999999998877643 4455 33 2578999998743
No 146
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.53 E-value=0.18 Score=39.14 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=58.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
+..-++||+|+-..+....+...++.+|.|..+... -|||..|.....+..|+..++-..++|+.+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh------hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 335789999999999988899999999988765443 3999999999999999999998888887766544
No 147
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.53 E-value=1.4 Score=24.18 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=40.9
Q ss_pred CCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 29 NISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 29 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
.++-.+++.-+..|+- .+|.. ++ .--||.|.+..+|++|....+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~---tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DR---TGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cC---CEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4566888988988874 33443 32 23579999999999999999998877766544
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.20 E-value=14 Score=28.95 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=58.5
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHhccC----CceeEEEeccC-------------CC-------------C--------
Q 033227 16 EVNRVLYVRNLPFN-ISSEEMYDIFGKY----GAIRQIRIGSS-------------KD-------------T-------- 56 (124)
Q Consensus 16 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~----g~i~~~~~~~~-------------~~-------------~-------- 56 (124)
...++|-|.|+.|. +.-.+|..+|..| |.|.+|.|... |. +
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 44689999999886 5567788887654 57888776321 11 0
Q ss_pred ----------------ccEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEEEeecc
Q 033227 57 ----------------RGTAFVVYEDIYDAKTAVDHLSGFNVA--NRYLIVLYYQQT 95 (124)
Q Consensus 57 ----------------~g~~fv~f~~~~~a~~a~~~l~~~~i~--g~~l~v~~~~~~ 95 (124)
--||.|+|.+...|.+....++|..+. +..+-+.|.+..
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 138899999999999999999999887 566666665543
No 149
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=84.01 E-value=2.3 Score=29.65 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEEeeccccc-cccCcccCHHHHHHHHHHcCCCC
Q 033227 67 IYDAKTAVDHLSGFNVANRYLIVLYYQQTKMS-KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 67 ~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
..-|+.|...|++.-..|+.++|.|+-....+ .|+..-++.+.+++-|+.||.++
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~a~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMHAELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeeccceEEEEecchhhhhHHHHHhhhhcCccc
Confidence 44677788889999999999999999874433 77888888999999999998765
No 150
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=82.71 E-value=1.7 Score=28.73 Aligned_cols=77 Identities=9% Similarity=0.049 Sum_probs=53.2
Q ss_pred CcEEEEcCCCCCCCHH-----HHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCe-EEEEEE
Q 033227 18 NRVLYVRNLPFNISSE-----EMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANR-YLIVLY 91 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~-----~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~-~l~v~~ 91 (124)
.+.+.+.+++..+-.+ ....+|.+|-......+.+. .+..-|.|.+...|..|...+++..+.|+ .++..+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs---frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS---FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh---hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 4567777776654322 24555665555443344322 35778999999999999999999999987 888888
Q ss_pred eecccc
Q 033227 92 YQQTKM 97 (124)
Q Consensus 92 ~~~~~~ 97 (124)
+.+...
T Consensus 87 aQ~~~~ 92 (193)
T KOG4019|consen 87 AQPGHP 92 (193)
T ss_pred ccCCCc
Confidence 776543
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=82.50 E-value=0.14 Score=37.58 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=50.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeC
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVA 83 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~ 83 (124)
++++|.+|+..+...++.++|..+|.+.+.++-.. ....+|-+.|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask-~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASK-SRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc-CCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 78999999999999999999999999887776432 234577799998888888888 5776554
No 152
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=75.15 E-value=9.6 Score=27.22 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=55.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCC----------CCccEEEEEecCHHHHHHHHH----HhCC--ce
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSK----------DTRGTAFVVYEDIYDAKTAVD----HLSG--FN 81 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----------~~~g~~fv~f~~~~~a~~a~~----~l~~--~~ 81 (124)
.+.|...|+...++--.+..-|..||+|.+|+++.+. +......+.|-+.+.+..... .|.- ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 3678888999888888888889999999999998643 124567888888776544322 2221 34
Q ss_pred eCCeEEEEEEeeccc
Q 033227 82 VANRYLIVLYYQQTK 96 (124)
Q Consensus 82 i~g~~l~v~~~~~~~ 96 (124)
+....|.+.|..-+.
T Consensus 95 L~S~~L~lsFV~l~y 109 (309)
T PF10567_consen 95 LKSESLTLSFVSLNY 109 (309)
T ss_pred cCCcceeEEEEEEec
Confidence 667778888877443
No 153
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=74.23 E-value=1.8 Score=26.14 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=22.1
Q ss_pred cccCcccCHHHHHHHHHHcCCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTKD 123 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~~ 123 (124)
+|++.+++.+++-++|.+||-..|-
T Consensus 24 rNLp~~ITseemydlFGkyg~IrQI 48 (124)
T KOG0114|consen 24 RNLPFKITSEEMYDLFGKYGTIRQI 48 (124)
T ss_pred ecCCccccHHHHHHHhhcccceEEE
Confidence 6799999999999999999987653
No 154
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=70.24 E-value=6.5 Score=27.54 Aligned_cols=99 Identities=13% Similarity=0.138 Sum_probs=61.7
Q ss_pred cEEEEcCCCCCCCHHH---HHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 19 RVLYVRNLPFNISSEE---MYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~---l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
...+++++-..+..+. +...|+.|..+....++.+ +..++++|+.|........+...-++..+..+.+++.-..
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 3444454433333322 2566777766665556553 4447899999998777777777666777766665554443
Q ss_pred ccccc--------------cccCcccCHHHHHHHHHHc
Q 033227 94 QTKMS--------------KKFDQKKKDDELAKMQEKY 117 (124)
Q Consensus 94 ~~~~~--------------~~~~~~~~~~~l~~~~~~~ 117 (124)
..... +-+.++++.+.+.+.|.+|
T Consensus 177 swedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kf 214 (290)
T KOG0226|consen 177 SWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKF 214 (290)
T ss_pred ccCCcccccCccccceeecccccccccHHHHHHHHHhc
Confidence 33222 3345558889999988877
No 155
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=67.34 E-value=3.3 Score=26.18 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=20.4
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|+++|++||...
T Consensus 40 gnL~~~~te~~L~~~F~~~G~I~ 62 (144)
T PLN03134 40 GGLSWGTDDASLRDAFAHFGDVV 62 (144)
T ss_pred eCCCCCCCHHHHHHHHhcCCCeE
Confidence 67899999999999999998654
No 156
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=62.85 E-value=9.7 Score=23.26 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=26.6
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHH-HHHHHHH
Q 033227 20 VLYVRNLPFN---------ISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIY-DAKTAVD 75 (124)
Q Consensus 20 ~l~v~~l~~~---------~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~-~a~~a~~ 75 (124)
++.|.|++-. .+...|...|+.|.++.-..+-......|+++|.|.+.- --..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4556666432 344678888988988763333222333689999999643 3344444
No 157
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=61.70 E-value=17 Score=26.84 Aligned_cols=66 Identities=12% Similarity=0.272 Sum_probs=45.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCc-eeEEEeccC-----CCCccEEEEEecCHHHHHHHHHHhCCceeC
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGA-IRQIRIGSS-----KDTRGTAFVVYEDIYDAKTAVDHLSGFNVA 83 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~-----~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~ 83 (124)
...+.|.+||+..+..++.+-+.++.. +....+... ..-.+.++|.|.+.++.......++|+.+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 467889999999999988877766543 111111111 111467899999999988888888886543
No 158
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=60.72 E-value=21 Score=25.39 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=31.7
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccccc--cccCcccCHHHH
Q 033227 60 AFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKMS--KKFDQKKKDDEL 110 (124)
Q Consensus 60 ~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~~--~~~~~~~~~~~l 110 (124)
|||.|.+..+|+.|.+.+.... ++.+++..+++.++- .|+.....+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~ 51 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFL 51 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHH
Confidence 7999999999999999655433 355577777655443 444443333333
No 159
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=60.40 E-value=26 Score=20.29 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=31.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYE 65 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~ 65 (124)
..-+||++++..+.+.-...+.+..+.-.-+.+-.+....||.|-...
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 467899999888887766666555554443333334445688887774
No 160
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=58.67 E-value=5.4 Score=28.96 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.4
Q ss_pred cccCcccCHHHHHHHHHHcCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVS 120 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~ 120 (124)
.|++.+.++.||..||.+||..
T Consensus 102 SNIPFrFRdpDL~aMF~kfG~V 123 (376)
T KOG0125|consen 102 SNIPFRFRDPDLRAMFEKFGKV 123 (376)
T ss_pred ecCCccccCccHHHHHHhhCce
Confidence 7899999999999999999975
No 161
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=54.80 E-value=28 Score=24.93 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=28.5
Q ss_pred CCCCCcEEEEcCCCCC------------CCHHHHHHHhccCCceeEEEec
Q 033227 14 PPEVNRVLYVRNLPFN------------ISSEEMYDIFGKYGAIRQIRIG 51 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~------------~~~~~l~~~f~~~g~i~~~~~~ 51 (124)
|.....+||+.+||-. .+++.|...|+.||.|..|.++
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3344568888888732 4567799999999999987765
No 162
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=54.14 E-value=9.7 Score=22.12 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHh
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIF 39 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f 39 (124)
..++|.|+|||....+++|+..+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 35899999999999999887654
No 163
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=50.96 E-value=29 Score=18.97 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=22.2
Q ss_pred cEEEEEecCHHHHHHHHHHhCCceeCCe
Q 033227 58 GTAFVVYEDIYDAKTAVDHLSGFNVANR 85 (124)
Q Consensus 58 g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 85 (124)
.+.++.|.|..+|.+|-+.|....+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 3689999999999999888886655433
No 164
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=50.82 E-value=32 Score=20.38 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=30.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecC
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYED 66 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~ 66 (124)
..-+||+++...+.+.-...+-+.++.-.-+.+-.+....||.|-.+..
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCC
Confidence 4678999888777766555555555544433333344445888887774
No 165
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.78 E-value=52 Score=17.82 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=15.7
Q ss_pred HHHHHHhccCCceeEEEec
Q 033227 33 EEMYDIFGKYGAIRQIRIG 51 (124)
Q Consensus 33 ~~l~~~f~~~g~i~~~~~~ 51 (124)
.+|+.+|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5789999999999866654
No 166
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=43.00 E-value=4 Score=31.64 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=48.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRY 86 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 86 (124)
+.++++|++++.+-..|..++..+.....+.+... +.-..++++.|.--.....|+.+||+..+....
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 67889999999999999999988876665544321 111356778888666666677778887766543
No 167
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=42.88 E-value=19 Score=25.16 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=20.6
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.|+..++++++|+++|.+||...
T Consensus 195 tNLsed~~E~dL~eLf~~fg~i~ 217 (270)
T KOG0122|consen 195 TNLSEDMREDDLEELFRPFGPIT 217 (270)
T ss_pred ecCccccChhHHHHHhhccCccc
Confidence 78999999999999999998754
No 168
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=41.87 E-value=43 Score=20.65 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=18.4
Q ss_pred CCCCCCHHHHHHHhccCCceeEEEec
Q 033227 26 LPFNISSEEMYDIFGKYGAIRQIRIG 51 (124)
Q Consensus 26 l~~~~~~~~l~~~f~~~g~i~~~~~~ 51 (124)
||+.++ .|..+|+.-|.|.++.-+
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItv 34 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITV 34 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEE
Confidence 677764 577899999999886544
No 169
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.50 E-value=1.1e+02 Score=23.69 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=43.4
Q ss_pred cEEEEcCCCCCC---CHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 033227 19 RVLYVRNLPFNI---SSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYL 87 (124)
Q Consensus 19 ~~l~v~~l~~~~---~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 87 (124)
.-=.|+||+.-. ....+..+=.+||+|-.+++- ..-.|..++.+.|..++.. ++..+.+|+.
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG------~~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG------SVPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEec------CceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 334577775432 345566666789999987772 2357888899999999885 7777777664
No 170
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=37.04 E-value=36 Score=25.71 Aligned_cols=25 Identities=16% Similarity=0.326 Sum_probs=22.4
Q ss_pred cccCcccCHHHHHHHHHHcCCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTKD 123 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~~ 123 (124)
++++.+.++.+|++.|+.||.+.+.
T Consensus 294 ~nlP~da~~~~l~~~Fk~FG~Ik~~ 318 (419)
T KOG0116|consen 294 KNLPPDATPAELEEVFKQFGPIKEG 318 (419)
T ss_pred ecCCCCCCHHHHHHHHhhccccccc
Confidence 7899999999999999999987654
No 171
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=36.10 E-value=39 Score=18.96 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=14.3
Q ss_pred ccCHHHHHHHHHHcCCCCCC
Q 033227 104 KKKDDELAKMQEKYGVSTKD 123 (124)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~~ 123 (124)
-++++|.+++++++++..+|
T Consensus 14 ils~eE~~~lL~~y~i~~~q 33 (74)
T PF01191_consen 14 ILSEEEKKELLKKYNIKPEQ 33 (74)
T ss_dssp EE-HHHHHHHHHHTT--TTC
T ss_pred EcCHHHHHHHHHHhCCChhh
Confidence 46789999999999998765
No 172
>PF15063 TC1: Thyroid cancer protein 1
Probab=35.91 E-value=38 Score=19.11 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=23.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCcee
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIR 46 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~ 46 (124)
++--+.||-.+++..+|+.+|..-|+..
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccchh
Confidence 5566778989999999999999999854
No 173
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.30 E-value=40 Score=23.47 Aligned_cols=35 Identities=14% Similarity=0.392 Sum_probs=28.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIR 49 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~ 49 (124)
......+|+-|+|..++++.|..+.+..|-+..+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 34468999999999999999999998887655443
No 174
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=34.41 E-value=1.4e+02 Score=20.07 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=32.3
Q ss_pred CCHHHHHHHhccC-CceeEEEeccCCC----CccEEEEEecCHHHHHHHHHH
Q 033227 30 ISSEEMYDIFGKY-GAIRQIRIGSSKD----TRGTAFVVYEDIYDAKTAVDH 76 (124)
Q Consensus 30 ~~~~~l~~~f~~~-g~i~~~~~~~~~~----~~g~~fv~f~~~~~a~~a~~~ 76 (124)
.+++++..+...- |.+.++.+...+. -+|-.||+|.+.++|.+++..
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4555555554322 6788887765322 268899999999999998764
No 175
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=34.28 E-value=1.2e+02 Score=18.93 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=30.6
Q ss_pred eEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 46 RQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 46 ~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
.++.|+.......+-+..+.+.. ...++..+.+..+.++++.|.....
T Consensus 15 ~f~~WP~~~~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~~ 62 (145)
T PF13689_consen 15 KFIEWPDSAPSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLSS 62 (145)
T ss_pred hhccCCCCCCCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECCC
Confidence 33455543122345666666555 4456777888999999999987653
No 176
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=33.53 E-value=87 Score=18.16 Aligned_cols=49 Identities=12% Similarity=0.042 Sum_probs=27.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhcc-CCceeEEEeccCCCCccEEEEEecC
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGK-YGAIRQIRIGSSKDTRGTAFVVYED 66 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~g~~fv~f~~ 66 (124)
..-+||+++...+.+.-...+-+. .+.-.-+.+-.+....||.|-.+..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 467899988877765543333333 2332222222234445788776664
No 177
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.88 E-value=1e+02 Score=17.42 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=22.4
Q ss_pred CCCccEEEEEecCHHHHHHHHHHhCCce
Q 033227 54 KDTRGTAFVVYEDIYDAKTAVDHLSGFN 81 (124)
Q Consensus 54 ~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 81 (124)
...+||-||+=.+..+...|+..+.+..
T Consensus 41 ~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 41 DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 3357999999999999999988777643
No 178
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=30.56 E-value=40 Score=19.18 Aligned_cols=21 Identities=19% Similarity=0.503 Sum_probs=17.1
Q ss_pred cccCHHHHHHHHHHcCCCCCC
Q 033227 103 QKKKDDELAKMQEKYGVSTKD 123 (124)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~~ 123 (124)
.-+++++.++++++|++..+|
T Consensus 16 ~iLs~eE~~~lL~~y~i~~~q 36 (79)
T PRK09570 16 EILSEEEAKKLLKEYGIKPEQ 36 (79)
T ss_pred EECCHHHHHHHHHHcCCCHHH
Confidence 346889999999999987765
No 179
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=26.75 E-value=95 Score=15.49 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=20.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGA 44 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~ 44 (124)
..+++.+.........|.+++..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46777777667788889999988877
No 180
>PF14893 PNMA: PNMA
Probab=25.94 E-value=55 Score=23.95 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFG 40 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~ 40 (124)
-+.+.|.+||.++++.+|++.+.
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHH
Confidence 46789999999999999887764
No 181
>PHA01632 hypothetical protein
Probab=25.70 E-value=1e+02 Score=16.28 Aligned_cols=20 Identities=15% Similarity=0.433 Sum_probs=15.6
Q ss_pred EEEcCCCCCCCHHHHHHHhc
Q 033227 21 LYVRNLPFNISSEEMYDIFG 40 (124)
Q Consensus 21 l~v~~l~~~~~~~~l~~~f~ 40 (124)
+.|..+|...++++|+.++.
T Consensus 19 ilieqvp~kpteeelrkvlp 38 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLP 38 (64)
T ss_pred EehhhcCCCCCHHHHHHHHH
Confidence 44557899999999988764
No 182
>PHA03008 hypothetical protein; Provisional
Probab=24.62 E-value=1.9e+02 Score=19.72 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=31.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS 52 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~ 52 (124)
+..+-..+|+|+.+--...-++.+|.++..+.++-++.
T Consensus 18 ~~~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvp 55 (234)
T PHA03008 18 DEICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVP 55 (234)
T ss_pred cccccEEEEecccccccccHHHHHHhhccccceEEEcc
Confidence 34467899999999888899999999999888877654
No 183
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=24.06 E-value=1.2e+02 Score=17.75 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=19.5
Q ss_pred ccEEEEEecCHHHHHHHHHHhCC
Q 033227 57 RGTAFVVYEDIYDAKTAVDHLSG 79 (124)
Q Consensus 57 ~g~~fv~f~~~~~a~~a~~~l~~ 79 (124)
+.+|-|+|.+.+.+..|...|..
T Consensus 51 ~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 51 RPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred eEeEEEECCChHHHHHHHHHHHH
Confidence 47999999999999998887664
No 184
>PF13773 DUF4170: Domain of unknown function (DUF4170)
Probab=24.05 E-value=93 Score=17.20 Aligned_cols=27 Identities=19% Similarity=0.064 Sum_probs=21.3
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeE
Q 033227 60 AFVVYEDIYDAKTAVDHLSGFNVANRY 86 (124)
Q Consensus 60 ~fv~f~~~~~a~~a~~~l~~~~i~g~~ 86 (124)
-.--|.+.++|..|++......++.--
T Consensus 28 iVG~fp~y~~A~~aWrakAq~TVDnA~ 54 (69)
T PF13773_consen 28 IVGIFPDYASAYAAWRAKAQRTVDNAH 54 (69)
T ss_pred EEecCCChHHHHHHHHHHHhCchhcce
Confidence 344588899999999998888887643
No 185
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=23.94 E-value=25 Score=19.29 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCCCCHHH
Q 033227 17 VNRVLYVRNLPFNISSEE 34 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~ 34 (124)
.++.++|+++|..+-.+.
T Consensus 26 tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred cCceEEECCCChHHHHcC
Confidence 368999999998776543
No 186
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=23.79 E-value=1.5e+02 Score=16.57 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=38.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhc-------cCCceeEE-EeccCCCCccEEEEEecCHHHHHHHHHHhCCc
Q 033227 20 VLYVRNLPFNISSEEMYDIFG-------KYGAIRQI-RIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80 (124)
Q Consensus 20 ~l~v~~l~~~~~~~~l~~~f~-------~~g~i~~~-~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 80 (124)
.+..+++|..++.++|..... .+..|..+ .++.....+-||+..=.|.+...++-+. .|.
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~ 69 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGL 69 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCC
Confidence 355678888888888766644 34344444 2233234467999888888887777664 354
No 187
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=23.03 E-value=69 Score=18.22 Aligned_cols=20 Identities=10% Similarity=0.325 Sum_probs=16.1
Q ss_pred ccCHHHHHHHHHHcCCCCCC
Q 033227 104 KKKDDELAKMQEKYGVSTKD 123 (124)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~~ 123 (124)
-.++++.+++++.+++..+|
T Consensus 20 vls~eE~~~vLk~l~i~~~q 39 (80)
T COG2012 20 VLSEEEAKEVLKELGIEPEQ 39 (80)
T ss_pred EcCHHHHHHHHHHhCCCHHH
Confidence 36788889999999987665
No 188
>PF11181 YflT: Heat induced stress protein YflT
Probab=22.80 E-value=1.7e+02 Score=17.14 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=20.6
Q ss_pred EEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 62 VVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 62 v~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
-.|.+.++|..++..|...-+...-|.|--
T Consensus 4 gv~~~~~E~~~~I~~L~~~Gy~~ddI~Vva 33 (103)
T PF11181_consen 4 GVYDNEEEALSAIEELKAQGYSEDDIYVVA 33 (103)
T ss_pred EEECCHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 457888888888888876555555555533
No 189
>smart00457 MACPF membrane-attack complex / perforin.
Probab=22.67 E-value=78 Score=20.82 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=18.8
Q ss_pred EcCCCCCCCHHHHHHHhccCCc
Q 033227 23 VRNLPFNISSEEMYDIFGKYGA 44 (124)
Q Consensus 23 v~~l~~~~~~~~l~~~f~~~g~ 44 (124)
+..||..........+|..||.
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGT 51 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGT 51 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCC
Confidence 4578888888889999999998
No 190
>PRK10905 cell division protein DamX; Validated
Probab=22.19 E-value=2.4e+02 Score=20.66 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=33.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCc-cEE--EEEecCHHHHHHHHHHhCC
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTR-GTA--FVVYEDIYDAKTAVDHLSG 79 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~-g~~--fv~f~~~~~a~~a~~~l~~ 79 (124)
.+|-|..+. +.+.+..+..+.|.-.+..+....+.+ .|. +-.|.+.++|.+|+..|-.
T Consensus 248 YTLQL~A~S---s~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 248 YTLQLSSSS---NYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred eEEEEEecC---CHHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 455555443 456677776666543233222222222 333 4578899999999998764
No 191
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=22.05 E-value=1.3e+02 Score=16.41 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=20.1
Q ss_pred HHHHHHHhccCCceeEEEeccCCCC-ccEEEE
Q 033227 32 SEEMYDIFGKYGAIRQIRIGSSKDT-RGTAFV 62 (124)
Q Consensus 32 ~~~l~~~f~~~g~i~~~~~~~~~~~-~g~~fv 62 (124)
+..|...|-+-..|.++.+...+.- +|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 4457777878888988877654222 455554
No 192
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.66 E-value=1.7e+02 Score=20.66 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=23.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEe
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRI 50 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~ 50 (124)
....|+|||.+++..-+..++...-.+....+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 45679999999999999888876555434333
No 193
>KOG2631 consensus Class II aldolase/adducin N-terminal domain protein [Carbohydrate transport and metabolism]
Probab=20.58 E-value=3e+02 Score=19.00 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=31.6
Q ss_pred EEcCCCCCCCH-HHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHH
Q 033227 22 YVRNLPFNISS-EEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKT 72 (124)
Q Consensus 22 ~v~~l~~~~~~-~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~ 72 (124)
+|.|.|..... ++|+..++.|..-+.|.+.+.| .||.=.+.+.|.-
T Consensus 159 IIeNt~~E~~L~D~l~~aie~YP~tcAVLVR~HG-----vyvWG~TWekaKt 205 (238)
T KOG2631|consen 159 IIENTPSESDLKDSLKKAIELYPDTCAVLVRRHG-----VYVWGPTWEKAKT 205 (238)
T ss_pred eecCCchHHHHHHHHHHHHHhCCcceEEEEecCc-----EEEecCcHHHHHH
Confidence 45666665554 6789999999998887775332 4666667776654
Done!