Query 033227
Match_columns 124
No_of_seqs 107 out of 1545
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 18:49:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lqv_A PRE-mRNA branch site pr 99.9 7.1E-27 2.4E-31 142.1 11.0 111 13-123 3-113 (115)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.2E-22 4E-27 120.6 11.3 79 17-95 18-99 (99)
3 4f02_A Polyadenylate-binding p 99.9 6.4E-22 2.2E-26 131.7 12.2 108 15-122 12-132 (213)
4 1x4a_A Splicing factor, argini 99.9 2.7E-21 9.4E-26 116.3 13.1 85 14-98 18-102 (109)
5 4f25_A Polyadenylate-binding p 99.9 1E-21 3.5E-26 119.4 10.5 81 17-97 4-85 (115)
6 2e5h_A Zinc finger CCHC-type a 99.9 4.8E-21 1.6E-25 112.2 12.3 84 10-93 8-94 (94)
7 1fxl_A Paraneoplastic encephal 99.9 5.9E-21 2E-25 121.6 13.5 104 18-121 2-116 (167)
8 2dgx_A KIAA0430 protein; RRM d 99.9 5.5E-21 1.9E-25 112.6 11.7 84 14-97 5-92 (96)
9 2dnm_A SRP46 splicing factor; 99.9 3.8E-21 1.3E-25 114.5 10.8 88 11-98 6-96 (103)
10 1b7f_A Protein (SXL-lethal pro 99.9 8.9E-21 3E-25 121.1 12.8 104 17-120 2-116 (168)
11 2cqc_A Arginine/serine-rich sp 99.9 5.9E-21 2E-25 112.0 11.1 85 10-94 7-94 (95)
12 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.6E-20 5.5E-25 111.8 13.1 87 12-98 9-96 (103)
13 1l3k_A Heterogeneous nuclear r 99.9 5.8E-21 2E-25 124.8 12.0 110 11-121 6-132 (196)
14 2cpz_A CUG triplet repeat RNA- 99.9 7.9E-21 2.7E-25 115.2 11.7 85 14-98 21-108 (115)
15 2cq3_A RNA-binding protein 9; 99.9 3E-20 1E-24 110.6 13.9 88 11-98 8-96 (103)
16 3tyt_A Heterogeneous nuclear r 99.9 1.2E-20 4.2E-25 125.1 13.4 102 17-120 3-150 (205)
17 3s8s_A Histone-lysine N-methyl 99.9 8.6E-21 2.9E-25 114.5 11.6 80 17-96 5-87 (110)
18 1x4h_A RNA-binding protein 28; 99.9 1.5E-20 5.2E-25 113.2 12.7 88 12-99 9-105 (111)
19 2cq1_A PTB-like protein L; RRM 99.9 1.6E-20 5.4E-25 111.7 12.5 87 9-98 6-94 (101)
20 2lxi_A RNA-binding protein 10; 99.9 1.1E-21 3.6E-26 114.7 7.1 80 18-97 1-85 (91)
21 2cqb_A Peptidyl-prolyl CIS-tra 99.9 9.8E-21 3.4E-25 112.5 11.3 85 15-99 9-96 (102)
22 1wi8_A EIF-4B, eukaryotic tran 99.9 1.7E-20 5.8E-25 111.9 12.2 85 12-98 9-97 (104)
23 2do4_A Squamous cell carcinoma 99.9 1.9E-20 6.6E-25 110.9 12.3 83 15-97 14-98 (100)
24 2dgs_A DAZ-associated protein 99.9 1.7E-20 5.8E-25 110.9 12.0 85 13-98 5-92 (99)
25 1x5u_A Splicing factor 3B subu 99.9 1E-20 3.5E-25 112.9 11.0 87 12-98 9-98 (105)
26 3md3_A Nuclear and cytoplasmic 99.9 9.6E-21 3.3E-25 120.5 11.6 103 19-121 1-115 (166)
27 2dgo_A Cytotoxic granule-assoc 99.9 3.3E-20 1.1E-24 112.4 13.4 88 11-98 8-98 (115)
28 2a3j_A U1 small nuclear ribonu 99.9 5.6E-21 1.9E-25 118.0 9.9 83 15-97 26-112 (127)
29 3md1_A Nuclear and cytoplasmic 99.9 1.4E-20 4.9E-25 107.7 10.8 78 19-96 2-82 (83)
30 2dnz_A Probable RNA-binding pr 99.9 1.3E-20 4.3E-25 110.6 10.6 83 16-98 3-88 (95)
31 2la6_A RNA-binding protein FUS 99.9 1E-20 3.5E-25 111.9 10.2 85 9-93 4-99 (99)
32 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.7E-20 5.9E-25 108.3 10.9 80 16-95 4-86 (87)
33 2cq0_A Eukaryotic translation 99.8 2E-20 6.8E-25 111.4 11.5 87 12-98 9-98 (103)
34 2d9p_A Polyadenylate-binding p 99.8 1.5E-20 5.1E-25 111.9 10.8 89 10-98 7-96 (103)
35 2ywk_A Putative RNA-binding pr 99.8 9.4E-21 3.2E-25 111.1 9.8 84 11-94 9-94 (95)
36 2cph_A RNA binding motif prote 99.8 2.4E-20 8.1E-25 111.6 11.7 87 12-98 9-100 (107)
37 1sjq_A Polypyrimidine tract-bi 99.8 6.3E-21 2.2E-25 113.9 8.9 82 14-98 12-95 (105)
38 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.7E-20 9.3E-25 107.0 11.3 79 15-93 4-85 (85)
39 2x1f_A MRNA 3'-END-processing 99.8 2.8E-20 9.6E-25 109.4 11.6 80 18-97 2-84 (96)
40 2lkz_A RNA-binding protein 5; 99.8 6E-21 2.1E-25 112.4 8.4 77 18-94 9-94 (95)
41 2dgp_A Bruno-like 4, RNA bindi 99.8 1.7E-20 5.9E-25 112.1 10.5 89 11-99 6-100 (106)
42 2khc_A Testis-specific RNP-typ 99.8 2.7E-20 9.2E-25 113.3 11.5 79 15-93 37-118 (118)
43 1x4d_A Matrin 3; structural ge 99.8 1.5E-20 5E-25 111.9 10.0 82 13-97 10-94 (102)
44 1oo0_B CG8781-PA, drosophila Y 99.8 3.1E-20 1.1E-24 111.7 11.4 82 15-96 23-107 (110)
45 1whw_A Hypothetical protein ri 99.8 5.5E-20 1.9E-24 108.7 12.3 83 16-98 6-91 (99)
46 1x5s_A Cold-inducible RNA-bind 99.8 2.4E-20 8.2E-25 110.8 10.7 86 13-98 7-95 (102)
47 3r27_A HnRNP L, heterogeneous 99.8 2.7E-20 9.4E-25 110.1 10.7 80 14-96 17-98 (100)
48 1x4c_A Splicing factor, argini 99.8 5.6E-20 1.9E-24 110.4 12.3 82 12-97 9-95 (108)
49 1p27_B RNA-binding protein 8A; 99.8 1.5E-20 5E-25 112.4 9.6 81 16-96 21-104 (106)
50 1nu4_A U1A RNA binding domain; 99.8 9.3E-21 3.2E-25 111.6 8.6 83 15-97 5-91 (97)
51 2dng_A Eukaryotic translation 99.8 5.7E-20 1.9E-24 109.4 12.1 87 10-98 7-96 (103)
52 2dnh_A Bruno-like 5, RNA bindi 99.8 4.2E-20 1.4E-24 110.2 11.4 84 15-98 12-100 (105)
53 2wbr_A GW182, gawky, LD47780P; 99.8 3.9E-20 1.3E-24 106.5 10.6 72 18-92 7-78 (89)
54 4a8x_A RNA-binding protein wit 99.8 5.7E-20 1.9E-24 106.3 11.2 80 17-96 3-86 (88)
55 1wex_A Hypothetical protein (r 99.8 5.1E-20 1.8E-24 110.0 11.2 81 15-98 12-94 (104)
56 2jrs_A RNA-binding protein 39; 99.8 3.7E-20 1.3E-24 111.3 10.6 85 12-96 20-107 (108)
57 2cpe_A RNA-binding protein EWS 99.8 6.2E-20 2.1E-24 110.9 11.6 86 13-98 10-106 (113)
58 2nlw_A Eukaryotic translation 99.8 2.8E-20 9.5E-25 111.3 9.9 85 14-98 11-103 (105)
59 3ns6_A Eukaryotic translation 99.8 3.6E-21 1.2E-25 114.2 5.9 84 16-99 4-97 (100)
60 2dgv_A HnRNP M, heterogeneous 99.8 2.8E-20 9.4E-25 108.5 9.5 83 15-97 5-88 (92)
61 2ad9_A Polypyrimidine tract-bi 99.8 3.2E-20 1.1E-24 113.2 10.1 85 11-98 24-110 (119)
62 2cpi_A CCR4-NOT transcription 99.8 2.9E-20 1E-24 112.2 9.8 82 15-96 12-102 (111)
63 2err_A Ataxin-2-binding protei 99.8 4.3E-20 1.5E-24 111.2 10.5 81 15-95 26-107 (109)
64 3nmr_A Cugbp ELAV-like family 99.8 4.1E-20 1.4E-24 118.6 11.1 105 17-121 2-123 (175)
65 3pgw_A U1-A; protein-RNA compl 99.8 8.9E-20 3.1E-24 125.5 13.4 82 15-96 6-91 (282)
66 2fc9_A NCL protein; structure 99.8 9.4E-20 3.2E-24 108.1 11.7 82 14-98 11-94 (101)
67 2kxn_B Transformer-2 protein h 99.8 1.7E-20 5.9E-25 116.1 8.7 85 12-96 40-127 (129)
68 2cqd_A RNA-binding region cont 99.8 1.5E-19 5.2E-24 109.7 12.8 86 11-97 10-98 (116)
69 1x5t_A Splicing factor 3B subu 99.8 4.3E-20 1.5E-24 108.5 9.8 82 17-98 4-89 (96)
70 2do0_A HnRNP M, heterogeneous 99.8 1.5E-19 5E-24 109.3 12.3 85 13-97 10-96 (114)
71 3ulh_A THO complex subunit 4; 99.8 9.9E-20 3.4E-24 109.0 11.2 81 13-93 24-106 (107)
72 2m2b_A RNA-binding protein 10; 99.8 1E-20 3.5E-25 117.3 7.0 86 12-98 17-111 (131)
73 2cpf_A RNA binding motif prote 99.8 4.6E-20 1.6E-24 108.8 9.5 82 17-98 4-91 (98)
74 2ytc_A PRE-mRNA-splicing facto 99.8 9.2E-20 3.1E-24 104.8 10.5 78 13-93 7-85 (85)
75 2dgt_A RNA-binding protein 30; 99.8 1.8E-19 6E-24 105.2 11.7 82 12-98 4-85 (92)
76 2adc_A Polypyrimidine tract-bi 99.8 5.8E-20 2E-24 123.4 11.0 105 12-118 28-176 (229)
77 2fc8_A NCL protein; structure 99.8 1.4E-19 4.7E-24 107.5 11.2 87 12-98 9-95 (102)
78 2e5j_A Methenyltetrahydrofolat 99.8 6E-20 2.1E-24 108.2 9.6 81 14-96 15-95 (97)
79 2dnq_A RNA-binding protein 4B; 99.8 1E-19 3.4E-24 105.9 10.4 79 15-98 5-83 (90)
80 1why_A Hypothetical protein ri 99.8 1.5E-19 5.2E-24 106.5 11.2 80 15-97 14-95 (97)
81 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.8E-19 6.2E-24 112.4 12.2 79 14-92 59-140 (140)
82 2xnq_A Nuclear polyadenylated 99.8 2E-19 6.8E-24 106.1 11.5 79 13-96 17-96 (97)
83 2jvr_A Nucleolar protein 3; RN 99.8 7E-20 2.4E-24 110.6 9.6 82 13-95 23-105 (111)
84 2cpj_A Non-POU domain-containi 99.8 1.1E-19 3.8E-24 107.4 10.4 81 14-97 11-91 (99)
85 3sde_A Paraspeckle component 1 99.8 2.4E-19 8.1E-24 122.6 13.4 103 16-121 20-124 (261)
86 2la4_A Nuclear and cytoplasmic 99.8 5.9E-20 2E-24 108.9 8.8 79 14-95 23-101 (101)
87 2dgw_A Probable RNA-binding pr 99.8 2.5E-19 8.6E-24 104.3 11.3 83 12-96 4-88 (91)
88 2fy1_A RNA-binding motif prote 99.8 9.7E-20 3.3E-24 110.8 9.9 84 15-98 4-89 (116)
89 2qfj_A FBP-interacting repress 99.8 9.2E-20 3.2E-24 120.7 10.5 104 18-121 28-153 (216)
90 3s7r_A Heterogeneous nuclear r 99.8 2.2E-19 7.5E-24 103.7 10.8 79 13-92 6-87 (87)
91 2cqg_A TDP-43, TAR DNA-binding 99.8 4.4E-19 1.5E-23 105.5 12.4 86 11-98 8-96 (103)
92 2cjk_A Nuclear polyadenylated 99.8 7.5E-20 2.6E-24 116.8 9.6 103 17-121 2-115 (167)
93 1x4g_A Nucleolysin TIAR; struc 99.8 1.8E-19 6.1E-24 108.3 10.7 81 15-98 22-102 (109)
94 2jvo_A Nucleolar protein 3; nu 99.8 1.3E-19 4.5E-24 108.9 10.0 78 15-97 28-105 (108)
95 2dh8_A DAZ-associated protein 99.8 1.1E-19 3.8E-24 108.5 9.6 87 11-98 9-98 (105)
96 2kt5_A RNA and export factor-b 99.8 3.6E-19 1.2E-23 109.2 12.1 84 14-97 31-116 (124)
97 2rs2_A Musashi-1, RNA-binding 99.8 1.9E-19 6.4E-24 108.4 10.5 82 15-97 22-106 (109)
98 3ex7_B RNA-binding protein 8A; 99.8 1.3E-19 4.4E-24 111.4 10.0 83 15-97 19-104 (126)
99 1u6f_A Tcubp1, RNA-binding pro 99.8 2.3E-19 7.8E-24 112.0 11.2 85 14-98 38-125 (139)
100 2dgu_A Heterogeneous nuclear r 99.8 5.1E-19 1.7E-23 105.3 12.0 79 15-98 8-86 (103)
101 2cpd_A Apobec-1 stimulating pr 99.8 9.2E-19 3.2E-23 103.4 13.0 80 14-98 11-92 (99)
102 1x5o_A RNA binding motif, sing 99.8 3.8E-19 1.3E-23 107.6 11.4 82 14-95 21-112 (114)
103 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.5E-20 1.2E-24 109.9 6.6 83 12-96 13-99 (100)
104 1fjc_A Nucleolin RBD2, protein 99.8 9.9E-20 3.4E-24 107.0 8.5 85 11-97 9-93 (96)
105 2db1_A Heterogeneous nuclear r 99.8 1.2E-19 4E-24 110.7 9.0 84 11-95 10-98 (118)
106 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.7E-19 1.3E-23 113.1 11.7 83 16-98 37-122 (156)
107 2div_A TRNA selenocysteine ass 99.8 1.4E-19 4.7E-24 106.9 9.1 82 15-96 6-95 (99)
108 2cqp_A RNA-binding protein 12; 99.8 1.4E-19 4.8E-24 106.7 9.0 82 14-95 11-95 (98)
109 2i2y_A Fusion protein consists 99.8 1.9E-19 6.7E-24 113.8 10.1 81 14-96 69-149 (150)
110 3ucg_A Polyadenylate-binding p 99.8 2.9E-19 1E-23 103.5 10.1 77 18-95 6-85 (89)
111 1s79_A Lupus LA protein; RRM, 99.8 5E-20 1.7E-24 109.9 6.9 79 16-95 9-89 (103)
112 3n9u_C Cleavage and polyadenyl 99.8 1.6E-19 5.3E-24 115.1 9.6 80 17-96 54-138 (156)
113 2dhg_A TRNA selenocysteine ass 99.8 7.8E-20 2.7E-24 108.9 7.6 85 14-98 5-93 (104)
114 1whx_A Hypothetical protein ri 99.8 2.4E-20 8.1E-25 112.7 5.4 78 17-97 9-86 (111)
115 3p5t_L Cleavage and polyadenyl 99.8 1.9E-20 6.6E-25 109.0 4.8 78 19-96 2-84 (90)
116 1wf1_A RNA-binding protein RAL 99.8 5.5E-19 1.9E-23 106.3 11.3 79 14-97 23-102 (110)
117 2cq4_A RNA binding motif prote 99.8 5.6E-19 1.9E-23 106.9 11.3 78 19-97 26-106 (114)
118 2dnp_A RNA-binding protein 14; 99.8 5E-19 1.7E-23 102.9 10.6 79 14-97 5-83 (90)
119 1wg5_A Heterogeneous nuclear r 99.8 6.5E-19 2.2E-23 105.1 11.3 86 11-97 8-96 (104)
120 2kn4_A Immunoglobulin G-bindin 99.8 6.3E-19 2.1E-23 112.2 11.9 83 15-97 67-152 (158)
121 2cpx_A Hypothetical protein FL 99.8 2.7E-19 9.3E-24 108.3 9.7 83 15-98 22-108 (115)
122 2lea_A Serine/arginine-rich sp 99.8 6.2E-20 2.1E-24 114.4 6.6 85 13-97 42-129 (135)
123 2cpy_A RNA-binding protein 12; 99.8 2.9E-19 1E-23 108.3 9.4 83 13-96 10-95 (114)
124 1x4e_A RNA binding motif, sing 99.8 3.3E-20 1.1E-24 106.8 4.9 79 15-93 2-83 (85)
125 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.6E-19 2.6E-23 112.7 11.7 82 16-97 70-154 (165)
126 2ek1_A RNA-binding protein 12; 99.8 1.3E-19 4.5E-24 106.2 7.3 78 17-94 14-94 (95)
127 1fje_B Nucleolin RBD12, protei 99.8 9.1E-20 3.1E-24 117.3 7.2 106 13-119 8-125 (175)
128 1p1t_A Cleavage stimulation fa 99.8 6.8E-20 2.3E-24 109.1 5.8 81 17-97 7-90 (104)
129 3egn_A RNA-binding protein 40; 99.8 3.2E-19 1.1E-23 111.9 9.2 83 15-97 42-132 (143)
130 1qm9_A Polypyrimidine tract-bi 99.8 3.7E-19 1.3E-23 116.7 9.8 99 18-118 3-145 (198)
131 2hvz_A Splicing factor, argini 99.8 1.4E-19 4.8E-24 107.3 7.1 78 19-98 1-78 (101)
132 2ghp_A U4/U6 snRNA-associated 99.8 8.2E-19 2.8E-23 121.2 12.0 103 15-118 38-142 (292)
133 1x4b_A Heterogeneous nuclear r 99.8 3E-19 1E-23 108.4 8.3 80 18-98 27-109 (116)
134 3smz_A Protein raver-1, ribonu 99.8 1.9E-18 6.4E-23 119.0 13.2 101 17-121 21-123 (284)
135 2e44_A Insulin-like growth fac 99.8 8E-19 2.7E-23 103.1 9.7 83 13-96 10-93 (96)
136 1x5p_A Negative elongation fac 99.8 3.6E-18 1.2E-22 100.6 12.4 80 14-98 11-90 (97)
137 2dnn_A RNA-binding protein 12; 99.8 6.9E-19 2.4E-23 105.9 9.4 79 15-95 13-93 (109)
138 2cqh_A IGF-II mRNA-binding pro 99.8 4.4E-19 1.5E-23 103.7 8.2 80 15-98 5-86 (93)
139 1x4f_A Matrin 3; structural ge 99.8 4.4E-19 1.5E-23 107.1 8.4 80 15-97 22-104 (112)
140 2dis_A Unnamed protein product 99.8 7.2E-19 2.5E-23 105.5 9.1 81 17-97 7-94 (109)
141 3smz_A Protein raver-1, ribonu 99.8 1.6E-18 5.4E-23 119.3 12.0 105 17-121 94-213 (284)
142 1wel_A RNA-binding protein 12; 99.8 7.2E-19 2.5E-23 108.0 8.9 83 13-96 20-105 (124)
143 2hgl_A HNRPF protein, heteroge 99.8 4E-19 1.4E-23 110.8 7.7 83 12-95 38-125 (136)
144 2kvi_A Nuclear polyadenylated 99.8 7.3E-19 2.5E-23 103.4 8.2 77 16-97 8-85 (96)
145 2krb_A Eukaryotic translation 99.8 2.9E-19 9.8E-24 102.0 6.2 72 18-89 1-80 (81)
146 1wez_A HnRNP H', FTP-3, hetero 99.8 1.3E-18 4.5E-23 103.5 8.9 84 12-97 9-94 (102)
147 2g4b_A Splicing factor U2AF 65 99.8 2.9E-18 1E-22 109.8 11.1 101 17-121 3-122 (172)
148 1sjr_A Polypyrimidine tract-bi 99.8 1.5E-18 5E-23 110.9 9.5 83 13-96 41-125 (164)
149 2jwn_A Embryonic polyadenylate 99.8 1.4E-18 4.8E-23 106.5 9.2 78 18-96 36-116 (124)
150 2mss_A Protein (musashi1); RNA 99.8 4.1E-19 1.4E-23 99.9 6.2 72 20-92 1-75 (75)
151 1fj7_A Nucleolin RBD1, protein 99.8 2.4E-19 8.1E-24 106.3 5.4 81 15-97 14-97 (101)
152 2ki2_A SS-DNA binding protein 99.8 1.2E-19 4.1E-24 105.5 4.0 78 19-97 2-82 (90)
153 2lmi_A GRSF-1, G-rich sequence 99.8 3.6E-19 1.2E-23 106.7 5.7 83 12-95 5-92 (107)
154 3md3_A Nuclear and cytoplasmic 99.8 8.9E-18 3E-22 106.7 12.1 82 13-94 82-166 (166)
155 3d2w_A TAR DNA-binding protein 99.8 6.2E-18 2.1E-22 98.2 10.2 78 14-97 7-86 (89)
156 3zzy_A Polypyrimidine tract-bi 99.8 6E-18 2E-22 104.4 10.6 84 12-97 22-108 (130)
157 2cq2_A Hypothetical protein LO 99.8 3.1E-18 1E-22 103.6 9.0 80 13-95 20-106 (114)
158 1wg1_A KIAA1579 protein, homol 99.8 3.4E-18 1.1E-22 99.0 8.9 76 17-96 4-79 (88)
159 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.5E-19 2.2E-23 99.4 5.4 73 19-92 1-76 (77)
160 2ghp_A U4/U6 snRNA-associated 99.8 7.3E-18 2.5E-22 116.4 11.8 105 17-121 116-239 (292)
161 2f3j_A RNA and export factor b 99.8 4.3E-18 1.5E-22 110.5 9.9 82 16-97 86-169 (177)
162 2e5i_A Heterogeneous nuclear r 99.8 1.1E-17 3.8E-22 102.7 11.1 76 19-97 26-104 (124)
163 2yh0_A Splicing factor U2AF 65 99.8 9.8E-18 3.3E-22 109.6 11.3 100 17-120 3-141 (198)
164 2e5g_A U6 snRNA-specific termi 99.8 1E-17 3.4E-22 98.1 9.4 78 17-97 7-84 (94)
165 3beg_B Splicing factor, argini 99.8 2.8E-18 9.4E-23 104.1 7.2 76 16-95 14-94 (115)
166 2diu_A KIAA0430 protein; struc 99.7 9.8E-18 3.3E-22 97.4 8.4 73 18-97 9-86 (96)
167 3q2s_C Cleavage and polyadenyl 99.7 4.4E-18 1.5E-22 114.5 7.7 80 17-96 67-151 (229)
168 4f02_A Polyadenylate-binding p 99.7 1.3E-17 4.6E-22 110.7 10.0 80 18-97 103-183 (213)
169 2xs2_A Deleted in azoospermia- 99.7 4.1E-18 1.4E-22 101.1 6.6 80 16-97 7-88 (102)
170 1iqt_A AUF1, heterogeneous nuc 99.7 1.8E-18 6.2E-23 97.1 4.8 72 20-92 1-75 (75)
171 2dit_A HIV TAT specific factor 99.7 7.1E-17 2.4E-21 97.4 12.1 85 14-99 11-106 (112)
172 2bz2_A Negative elongation fac 99.7 1.7E-17 5.9E-22 101.5 9.0 79 14-97 35-113 (121)
173 1fje_B Nucleolin RBD12, protei 99.7 2.9E-17 1E-21 105.5 10.5 79 15-95 96-174 (175)
174 2g4b_A Splicing factor U2AF 65 99.7 3.2E-17 1.1E-21 104.9 10.4 79 14-92 90-171 (172)
175 2hzc_A Splicing factor U2AF 65 99.7 2.4E-17 8.4E-22 94.9 8.8 71 17-91 5-86 (87)
176 2hgm_A HNRPF protein, heteroge 99.7 9.5E-18 3.2E-22 103.3 7.4 81 13-95 37-121 (126)
177 2lcw_A RNA-binding protein FUS 99.6 2.1E-19 7.2E-24 109.1 0.0 83 16-98 5-98 (116)
178 3pgw_S U1-70K; protein-RNA com 99.7 3.8E-17 1.3E-21 118.9 11.4 82 16-97 100-184 (437)
179 2hgn_A Heterogeneous nuclear r 99.7 2.8E-18 9.7E-23 107.3 4.4 82 14-97 42-125 (139)
180 1wf0_A TDP-43, TAR DNA-binding 99.7 1.8E-17 6.3E-22 95.8 7.3 78 17-98 4-81 (88)
181 2yh0_A Splicing factor U2AF 65 99.7 1.1E-16 3.8E-21 104.5 11.3 82 16-97 112-196 (198)
182 2qfj_A FBP-interacting repress 99.7 7.6E-17 2.6E-21 106.6 10.0 81 17-97 124-207 (216)
183 2j8a_A Histone-lysine N-methyl 99.7 3.6E-17 1.2E-21 100.1 7.4 80 18-97 2-98 (136)
184 2dnl_A Cytoplasmic polyadenyla 99.7 8.3E-17 2.8E-21 97.4 8.9 75 16-93 6-86 (114)
185 2pe8_A Splicing factor 45; RRM 99.7 2.2E-16 7.6E-21 94.3 10.6 80 16-95 6-94 (105)
186 2cjk_A Nuclear polyadenylated 99.7 3.8E-17 1.3E-21 104.1 7.6 77 18-95 87-166 (167)
187 1l3k_A Heterogeneous nuclear r 99.7 2E-16 7E-21 103.1 10.7 81 17-98 103-186 (196)
188 1b7f_A Protein (SXL-lethal pro 99.7 2.4E-16 8.2E-21 100.4 10.6 78 15-92 86-168 (168)
189 2dha_A FLJ20171 protein; RRM d 99.7 6.2E-17 2.1E-21 99.3 7.5 80 15-95 20-105 (123)
190 3u1l_A PRE-mRNA-splicing facto 99.7 5.6E-17 1.9E-21 109.5 7.8 79 15-96 131-230 (240)
191 3nmr_A Cugbp ELAV-like family 99.7 1.3E-16 4.5E-21 102.2 9.2 77 17-93 94-175 (175)
192 3pgw_A U1-A; protein-RNA compl 99.7 3.8E-16 1.3E-20 107.3 11.4 75 17-93 206-281 (282)
193 2voo_A Lupus LA protein; RNA-b 99.7 3E-16 1E-20 103.0 10.0 78 18-96 109-188 (193)
194 1fxl_A Paraneoplastic encephal 99.7 4.5E-16 1.5E-20 98.9 9.5 77 16-92 86-167 (167)
195 1qm9_A Polypyrimidine tract-bi 99.7 8.8E-16 3E-20 100.5 9.9 78 16-95 118-197 (198)
196 2adc_A Polypyrimidine tract-bi 99.6 1.4E-15 4.7E-20 102.0 9.8 77 17-95 150-228 (229)
197 3v4m_A Splicing factor U2AF 65 99.6 3.9E-15 1.3E-19 88.9 8.7 79 17-95 4-97 (105)
198 3tyt_A Heterogeneous nuclear r 99.6 2.1E-15 7.3E-20 99.8 8.2 76 17-92 122-204 (205)
199 3tht_A Alkylated DNA repair pr 99.6 2.1E-14 7E-19 101.5 10.8 83 8-93 8-97 (345)
200 3ue2_A Poly(U)-binding-splicin 99.6 1.8E-14 6.2E-19 87.6 8.6 79 17-95 19-109 (118)
201 3sde_A Paraspeckle component 1 99.6 2.4E-14 8.1E-19 97.7 10.1 81 17-97 95-181 (261)
202 1jmt_A Splicing factor U2AF 35 99.6 2.4E-15 8.1E-20 89.7 4.2 70 24-93 21-104 (104)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 9E-14 3.1E-18 82.2 10.4 76 18-97 10-92 (100)
204 3s6e_A RNA-binding protein 39; 99.5 1.8E-13 6E-18 82.8 10.7 79 16-95 5-93 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 1.8E-11 6.3E-16 74.4 10.3 79 12-93 12-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 2.1E-11 7.2E-16 70.2 8.4 73 18-96 7-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 2.9E-10 9.9E-15 65.7 6.6 70 18-93 15-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 1.5E-09 5.2E-14 72.2 7.3 78 18-95 124-213 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.9 1.5E-08 5.1E-13 59.9 9.6 76 15-93 18-98 (117)
210 1whv_A Poly(A)-specific ribonu 98.4 3.6E-06 1.2E-10 48.7 8.6 61 12-78 10-70 (100)
211 1wey_A Calcipressin 1; structu 98.3 2.3E-06 7.9E-11 50.2 7.0 77 17-96 4-85 (104)
212 2kn4_A Immunoglobulin G-bindin 98.3 8.6E-07 3E-11 55.7 4.5 74 48-121 3-98 (158)
213 2i2y_A Fusion protein consists 98.3 4.3E-07 1.5E-11 56.7 2.9 65 56-121 12-101 (150)
214 1uw4_A UPF3X; nonsense mediate 98.2 2.7E-05 9.2E-10 44.7 9.7 77 19-95 2-88 (91)
215 2dhx_A Poly (ADP-ribose) polym 98.1 9.1E-05 3.1E-09 43.3 9.9 74 17-96 7-85 (104)
216 3ctr_A Poly(A)-specific ribonu 97.9 2.5E-05 8.4E-10 45.3 4.7 55 18-78 6-60 (101)
217 2l08_A Regulator of nonsense t 97.7 0.00018 6E-09 41.7 6.7 76 18-93 9-94 (97)
218 1wwh_A Nucleoporin 35, nucleop 97.6 0.00051 1.7E-08 41.3 8.1 75 16-95 22-97 (119)
219 3p3d_A Nucleoporin 53; structu 96.9 0.0017 5.9E-08 39.5 4.5 76 18-95 7-99 (132)
220 3pq1_A Poly(A) RNA polymerase; 96.8 0.00082 2.8E-08 49.3 3.3 54 19-75 54-107 (464)
221 2lea_A Serine/arginine-rich sp 95.7 0.0018 6.1E-08 39.5 0.1 63 58-121 5-75 (135)
222 3d45_A Poly(A)-specific ribonu 95.7 0.069 2.3E-06 39.7 8.6 57 16-78 438-494 (507)
223 3pgw_S U1-70K; protein-RNA com 93.9 0.003 1E-07 46.0 -2.7 24 99-122 108-131 (437)
224 2lxi_A RNA-binding protein 10; 90.6 0.26 8.9E-06 27.5 3.2 20 99-118 7-26 (91)
225 1sjq_A Polypyrimidine tract-bi 89.3 0.15 5E-06 29.7 1.4 24 99-122 22-45 (105)
226 1iqt_A AUF1, heterogeneous nuc 87.3 0.47 1.6E-05 25.0 2.6 23 99-121 5-27 (75)
227 2jvr_A Nucleolar protein 3; RN 86.5 0.54 1.8E-05 27.4 2.7 34 85-118 15-53 (111)
228 2mss_A Protein (musashi1); RNA 86.4 0.49 1.7E-05 24.9 2.3 24 99-122 5-28 (75)
229 4fxv_A ELAV-like protein 1; RN 86.3 0.25 8.4E-06 28.1 1.1 23 99-121 25-47 (99)
230 3d2w_A TAR DNA-binding protein 86.3 0.21 7.2E-06 27.8 0.8 24 99-122 17-40 (89)
231 2ad9_A Polypyrimidine tract-bi 86.1 0.3 1E-05 29.0 1.4 24 99-122 37-60 (119)
232 3r27_A HnRNP L, heterogeneous 85.9 0.5 1.7E-05 27.2 2.3 23 99-121 27-49 (100)
233 1rk8_A CG8781-PA, CG8781-PA pr 85.6 0.52 1.8E-05 29.2 2.4 23 99-121 78-100 (165)
234 1wf0_A TDP-43, TAR DNA-binding 82.8 0.37 1.3E-05 26.4 0.8 24 99-122 11-34 (88)
235 2dgt_A RNA-binding protein 30; 82.7 0.64 2.2E-05 25.6 1.8 24 99-122 16-39 (92)
236 2ek1_A RNA-binding protein 12; 82.5 0.68 2.3E-05 25.5 1.8 24 99-122 21-44 (95)
237 2cqp_A RNA-binding protein 12; 82.1 0.82 2.8E-05 25.4 2.1 24 99-122 21-44 (98)
238 2lkz_A RNA-binding protein 5; 81.8 0.53 1.8E-05 26.6 1.2 21 99-119 15-35 (95)
239 1wex_A Hypothetical protein (r 81.8 0.76 2.6E-05 26.4 1.9 23 99-121 21-43 (104)
240 3p5t_L Cleavage and polyadenyl 81.8 0.86 2.9E-05 25.0 2.1 20 99-118 7-26 (90)
241 1x5t_A Splicing factor 3B subu 81.7 1 3.4E-05 24.9 2.4 24 99-122 11-34 (96)
242 2dgp_A Bruno-like 4, RNA bindi 81.6 0.8 2.7E-05 25.9 2.0 23 99-121 19-41 (106)
243 2cqh_A IGF-II mRNA-binding pro 81.2 1.4 4.7E-05 24.2 2.8 21 99-119 14-34 (93)
244 1x5s_A Cold-inducible RNA-bind 81.0 0.88 3E-05 25.5 2.0 23 99-121 18-40 (102)
245 2dnp_A RNA-binding protein 14; 81.0 0.63 2.2E-05 25.5 1.3 23 99-121 15-37 (90)
246 3s8s_A Histone-lysine N-methyl 80.7 0.48 1.7E-05 27.4 0.8 24 99-122 12-35 (110)
247 2wbr_A GW182, gawky, LD47780P; 80.5 0.87 3E-05 25.7 1.8 23 99-121 13-35 (89)
248 2div_A TRNA selenocysteine ass 80.3 1.1 3.6E-05 25.0 2.1 23 99-121 15-37 (99)
249 2cq2_A Hypothetical protein LO 80.2 0.87 3E-05 26.8 1.8 23 99-121 33-55 (114)
250 2e5j_A Methenyltetrahydrofolat 80.2 1.6 5.5E-05 24.2 2.9 23 99-121 25-47 (97)
251 2cpz_A CUG triplet repeat RNA- 80.0 0.94 3.2E-05 26.0 1.9 24 99-122 31-54 (115)
252 4a8x_A RNA-binding protein wit 79.7 1.2 4E-05 24.1 2.2 23 99-121 10-32 (88)
253 2la4_A Nuclear and cytoplasmic 79.7 0.93 3.2E-05 25.4 1.8 24 99-122 33-56 (101)
254 1s79_A Lupus LA protein; RRM, 79.7 0.64 2.2E-05 26.6 1.1 23 99-121 17-39 (103)
255 2la6_A RNA-binding protein FUS 79.3 1.1 3.8E-05 25.0 2.0 24 99-122 19-42 (99)
256 1whx_A Hypothetical protein ri 79.3 1.2 4E-05 25.7 2.2 23 99-121 16-38 (111)
257 2err_A Ataxin-2-binding protei 79.0 0.97 3.3E-05 25.9 1.7 24 99-122 35-58 (109)
258 2dgu_A Heterogeneous nuclear r 79.0 0.79 2.7E-05 25.9 1.3 23 99-121 17-39 (103)
259 1x4c_A Splicing factor, argini 79.0 0.75 2.6E-05 26.3 1.2 23 99-121 21-43 (108)
260 2ywk_A Putative RNA-binding pr 78.7 0.78 2.7E-05 25.3 1.2 23 99-121 22-44 (95)
261 2cqb_A Peptidyl-prolyl CIS-tra 78.6 1 3.5E-05 25.2 1.7 24 99-122 18-41 (102)
262 2cqi_A Nucleolysin TIAR; RNA r 78.4 0.84 2.9E-05 25.7 1.3 23 99-121 21-43 (103)
263 2cpf_A RNA binding motif prote 78.4 0.75 2.6E-05 25.6 1.1 23 99-121 11-33 (98)
264 1why_A Hypothetical protein ri 78.4 1.4 4.7E-05 24.5 2.2 23 99-121 23-45 (97)
265 1x4a_A Splicing factor, argini 78.2 0.81 2.8E-05 26.1 1.2 23 99-121 28-50 (109)
266 2cq1_A PTB-like protein L; RRM 78.0 0.68 2.3E-05 26.5 0.8 23 99-121 21-43 (101)
267 1wf1_A RNA-binding protein RAL 77.8 1.2 4.3E-05 25.3 2.0 24 99-122 33-57 (110)
268 1p1t_A Cleavage stimulation fa 77.7 1.2 4E-05 25.0 1.8 23 99-121 14-36 (104)
269 2dh8_A DAZ-associated protein 77.5 0.87 3E-05 25.7 1.2 23 99-121 22-44 (105)
270 2jvo_A Nucleolar protein 3; nu 77.0 1.1 3.6E-05 25.7 1.5 24 99-122 37-60 (108)
271 2e44_A Insulin-like growth fac 76.9 1.6 5.6E-05 24.0 2.2 23 99-121 21-43 (96)
272 2m2b_A RNA-binding protein 10; 76.7 1.5 5.2E-05 25.9 2.2 24 99-122 29-52 (131)
273 2cph_A RNA binding motif prote 76.6 0.9 3.1E-05 25.7 1.1 23 99-121 21-43 (107)
274 2kvi_A Nuclear polyadenylated 76.3 1.2 3.9E-05 24.8 1.5 24 99-122 16-40 (96)
275 1whw_A Hypothetical protein ri 76.1 1.7 5.8E-05 24.1 2.2 23 99-121 14-36 (99)
276 2dnl_A Cytoplasmic polyadenyla 75.7 1.4 4.8E-05 25.4 1.8 23 99-121 14-36 (114)
277 2voo_A Lupus LA protein; RNA-b 75.6 4.3 0.00015 25.8 4.2 56 66-121 63-137 (193)
278 2hgn_A Heterogeneous nuclear r 75.6 1.5 5E-05 26.7 1.9 22 99-120 52-73 (139)
279 2cqd_A RNA-binding region cont 75.6 1 3.4E-05 26.0 1.1 23 99-121 23-45 (116)
280 1x4b_A Heterogeneous nuclear r 75.4 1.1 3.9E-05 25.7 1.3 23 99-121 33-55 (116)
281 2cpy_A RNA-binding protein 12; 75.3 1.1 3.7E-05 25.9 1.2 22 99-120 21-42 (114)
282 2dha_A FLJ20171 protein; RRM d 75.2 2 6.8E-05 25.4 2.4 22 99-120 29-50 (123)
283 2cqg_A TDP-43, TAR DNA-binding 75.1 2 6.8E-05 24.0 2.3 23 99-121 21-43 (103)
284 1x4h_A RNA-binding protein 28; 74.6 1.1 3.7E-05 25.5 1.1 22 99-120 21-42 (111)
285 2rs2_A Musashi-1, RNA-binding 74.2 0.96 3.3E-05 25.9 0.8 23 99-121 31-53 (109)
286 2dgo_A Cytotoxic granule-assoc 74.2 1.2 4.1E-05 25.5 1.2 23 99-121 21-43 (115)
287 1x4g_A Nucleolysin TIAR; struc 73.9 2.4 8.1E-05 24.0 2.4 23 99-121 31-53 (109)
288 3ulh_A THO complex subunit 4; 73.8 2.1 7.1E-05 24.1 2.2 23 99-121 35-57 (107)
289 1sjr_A Polypyrimidine tract-bi 73.8 1.8 6.2E-05 27.2 2.0 23 99-121 52-74 (164)
290 2jwn_A Embryonic polyadenylate 73.3 1.1 3.8E-05 26.1 0.9 23 99-121 42-64 (124)
291 2cpe_A RNA-binding protein EWS 72.9 2.2 7.6E-05 24.3 2.1 23 99-121 21-43 (113)
292 2dgx_A KIAA0430 protein; RRM d 72.3 1.5 5.2E-05 24.3 1.3 23 99-121 15-41 (96)
293 3zzy_A Polypyrimidine tract-bi 72.1 2 6.8E-05 25.9 1.8 23 99-121 34-56 (130)
294 3egn_A RNA-binding protein 40; 71.8 3 0.0001 24.9 2.6 23 99-121 51-73 (143)
295 1wel_A RNA-binding protein 12; 71.7 1.6 5.4E-05 25.5 1.3 24 99-122 31-54 (124)
296 3lqv_A PRE-mRNA branch site pr 71.6 2.5 8.4E-05 24.2 2.2 23 99-121 14-36 (115)
297 2kt5_A RNA and export factor-b 71.5 2 7E-05 25.0 1.8 23 99-121 41-63 (124)
298 2dhg_A TRNA selenocysteine ass 71.4 3.1 0.0001 23.2 2.5 22 99-120 15-37 (104)
299 1u6f_A Tcubp1, RNA-binding pro 71.1 1.6 5.6E-05 25.9 1.3 23 99-121 48-70 (139)
300 2kxn_B Transformer-2 protein h 70.5 1.3 4.4E-05 26.3 0.8 23 99-121 52-74 (129)
301 2e5i_A Heterogeneous nuclear r 70.3 1.3 4.6E-05 26.3 0.8 24 99-122 31-54 (124)
302 3n9u_C Cleavage and polyadenyl 70.2 3.1 0.00011 25.5 2.5 20 99-118 61-80 (156)
303 2ku7_A MLL1 PHD3-CYP33 RRM chi 67.7 3.5 0.00012 24.3 2.3 23 99-121 69-91 (140)
304 2hgl_A HNRPF protein, heteroge 67.5 2.1 7.1E-05 25.8 1.2 21 99-119 50-70 (136)
305 2f3j_A RNA and export factor b 66.7 3.3 0.00011 26.0 2.1 23 99-121 94-116 (177)
306 2g0c_A ATP-dependent RNA helic 65.9 3.1 0.0001 22.2 1.6 59 29-93 12-75 (76)
307 1h2v_Z 20 kDa nuclear CAP bind 65.7 2.3 7.9E-05 25.8 1.2 23 99-121 45-67 (156)
308 3q2s_C Cleavage and polyadenyl 59.3 5.5 0.00019 26.1 2.2 20 99-118 74-93 (229)
309 4e8u_A Putative uncharacterize 49.3 47 0.0016 21.0 5.6 56 20-75 14-81 (172)
310 3e6i_A CYPIIE1, P450-J, cytoch 45.7 28 0.00096 24.5 4.3 51 20-76 18-71 (476)
311 3swz_A Steroid 17-alpha-hydrox 44.5 45 0.0015 23.7 5.2 50 20-75 16-69 (494)
312 1eik_A RNA polymerase subunit 38.5 27 0.00092 19.0 2.5 20 104-123 16-35 (77)
313 4eyt_A Telomerase associated p 36.9 57 0.002 18.3 8.3 75 16-95 10-91 (129)
314 3tbg_A Cytochrome P450 2D6; mo 32.3 42 0.0014 23.6 3.4 48 22-75 20-70 (479)
315 1hmj_A RPB5, protein (subunit 29.8 26 0.00089 19.1 1.5 21 103-123 13-33 (78)
316 3ts2_A Protein LIN-28 homolog 28.3 15 0.0005 22.5 0.4 24 37-65 6-29 (148)
317 3lpe_A Putative transcription 27.6 61 0.0021 17.9 2.9 34 45-80 40-73 (92)
318 4ayb_H DNA-directed RNA polyme 27.5 44 0.0015 18.4 2.2 20 104-123 22-41 (84)
319 3fut_A Dimethyladenosine trans 25.4 68 0.0023 21.5 3.3 33 18-51 110-142 (271)
320 3pm0_A Cypib1, cytochrome P450 25.3 1.3E+02 0.0046 21.2 5.0 49 21-75 18-68 (507)
321 2ns6_A Mobilization protein A; 23.5 1.5E+02 0.005 18.8 5.1 47 22-68 74-128 (185)
322 3uzu_A Ribosomal RNA small sub 23.2 36 0.0012 22.9 1.6 33 19-51 115-147 (279)
323 4bby_A Alkyldihydroxyacetoneph 22.9 85 0.0029 24.0 3.7 53 26-78 351-409 (658)
No 1
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.95 E-value=7.1e-27 Score=142.05 Aligned_cols=111 Identities=67% Similarity=1.193 Sum_probs=105.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
.+++.+++|||+|||..+++++|+.+|++||.|..+.++.++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CCTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45666899999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred eccccccccCcccCHHHHHHHHHHcCCCCCC
Q 033227 93 QQTKMSKKFDQKKKDDELAKMQEKYGVSTKD 123 (124)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 123 (124)
.+.+...+++....+++++++|+++|+..++
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 113 (115)
T 3lqv_A 83 NANRAFQKMDTKKKEEQLKLLKEKYGINTDP 113 (115)
T ss_dssp CHHHHTTTSCHHHHHHHHHHHHHHHCCCCSC
T ss_pred cCChhhhhhhHhHhHHHHHHHHHHhCCCCCC
Confidence 9998889999999999999999999998876
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=120.56 Aligned_cols=79 Identities=24% Similarity=0.445 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.+++|||+|||+.+++++|+.+|++||.|..+.++++ +.++|||||+|.+.++|++|++.|||..+.|+.|+|.|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4689999999999999999999999999999999875 4568999999999999999999999999999999999998
Q ss_pred cc
Q 033227 94 QT 95 (124)
Q Consensus 94 ~~ 95 (124)
|.
T Consensus 98 PS 99 (99)
T 4fxv_A 98 PS 99 (99)
T ss_dssp BC
T ss_pred CC
Confidence 73
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.88 E-value=6.4e-22 Score=131.69 Aligned_cols=108 Identities=20% Similarity=0.319 Sum_probs=95.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
..+.++|||+|||+.+++++|+++|++||.|.+|.++++ +.++|||||+|.+.++|.+|+..+++..+.|+.+++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 344689999999999999999999999999999999875 45689999999999999999999999999999999999
Q ss_pred eeccccc----------cccCcccCHHHHHHHHHHcCCCCC
Q 033227 92 YQQTKMS----------KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 92 ~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
+...... .+++..+++++|.++|+.||....
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~ 132 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 132 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred ccccccccccccccceECCcccccHHHHHHHHHhhcCCeEE
Confidence 8765432 789999999999999999996543
No 4
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.7e-21 Score=116.25 Aligned_cols=85 Identities=32% Similarity=0.462 Sum_probs=78.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
++...++|||+|||+.+++++|+.+|++||.|..+.+..++.+++||||+|.+.++|++|++.||+..+.|+.|+|.+++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34456899999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred ccccc
Q 033227 94 QTKMS 98 (124)
Q Consensus 94 ~~~~~ 98 (124)
+.+..
T Consensus 98 ~~~~~ 102 (109)
T 1x4a_A 98 SGRGT 102 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 5
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1e-21 Score=119.37 Aligned_cols=81 Identities=22% Similarity=0.473 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCC-CCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSK-DTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
..++|||+|||+.+++++|+++|++||.|..+.++.+. .++|||||+|.+.++|++|+..|+|..+.|+.|+|.++.+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 35789999999999999999999999999999988763 35899999999999999999999999999999999998876
Q ss_pred cc
Q 033227 96 KM 97 (124)
Q Consensus 96 ~~ 97 (124)
..
T Consensus 84 ~~ 85 (115)
T 4f25_A 84 KE 85 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 6
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=4.8e-21 Score=112.21 Aligned_cols=84 Identities=23% Similarity=0.456 Sum_probs=75.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 033227 10 NARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRY 86 (124)
Q Consensus 10 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 86 (124)
.....++..++|||+|||..+++++|+++|++||.|..+.++.+ +.++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34444556799999999999999999999999999999999876 456899999999999999999999999999999
Q ss_pred EEEEEee
Q 033227 87 LIVLYYQ 93 (124)
Q Consensus 87 l~v~~~~ 93 (124)
|+|.|++
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999974
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.87 E-value=5.9e-21 Score=121.63 Aligned_cols=104 Identities=27% Similarity=0.456 Sum_probs=94.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
+++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 589999999999999999999999999999988775 45579999999999999999999999999999999999987
Q ss_pred cccc--------cccCcccCHHHHHHHHHHcCCCC
Q 033227 95 TKMS--------KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 95 ~~~~--------~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.... .+++...++++|.++|++||...
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~ 116 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 116 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEe
Confidence 6542 77899999999999999998643
No 8
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.5e-21 Score=112.62 Aligned_cols=84 Identities=19% Similarity=0.345 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMY----DIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
+...+++|||+|||..+++++|+ .+|++||.|..+.++.+..++|||||+|.+.++|++|+..|||..+.|+.|+|
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 33457899999999999999999 99999999999999987666899999999999999999999999999999999
Q ss_pred EEeecccc
Q 033227 90 LYYQQTKM 97 (124)
Q Consensus 90 ~~~~~~~~ 97 (124)
.++++...
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99987643
No 9
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.8e-21 Score=114.49 Aligned_cols=88 Identities=27% Similarity=0.367 Sum_probs=79.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYL 87 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 87 (124)
..+.....++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..||+..+.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3444556799999999999999999999999999999999875 5568999999999999999999999999999999
Q ss_pred EEEEeeccccc
Q 033227 88 IVLYYQQTKMS 98 (124)
Q Consensus 88 ~v~~~~~~~~~ 98 (124)
+|.++++.+..
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dnm_A 86 RVQVARYGRRD 96 (103)
T ss_dssp EEEECSSCCSC
T ss_pred EEEECCcCCCC
Confidence 99999977544
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.86 E-value=8.9e-21 Score=121.10 Aligned_cols=104 Identities=31% Similarity=0.458 Sum_probs=94.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.+++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|..|+..|+|..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3689999999999999999999999999999998875 3457999999999999999999999999999999999998
Q ss_pred ccccc--------cccCcccCHHHHHHHHHHcCCC
Q 033227 94 QTKMS--------KKFDQKKKDDELAKMQEKYGVS 120 (124)
Q Consensus 94 ~~~~~--------~~~~~~~~~~~l~~~~~~~g~~ 120 (124)
+.... .+++...++++|.++|++||..
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i 116 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSI 116 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCE
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcE
Confidence 65433 7789999999999999999864
No 11
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.9e-21 Score=111.96 Aligned_cols=85 Identities=29% Similarity=0.471 Sum_probs=76.0
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 033227 10 NARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRY 86 (124)
Q Consensus 10 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 86 (124)
..+..++.+++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..|+|..+.|+.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 7 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 33444556799999999999999999999999999999999875 445899999999999999999999999999999
Q ss_pred EEEEEeec
Q 033227 87 LIVLYYQQ 94 (124)
Q Consensus 87 l~v~~~~~ 94 (124)
|+|.+++.
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99999764
No 12
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.6e-20 Score=111.78 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=77.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCC-CCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSK-DTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
.......++|||+|||+.+++++|+.+|++||.|..+.++.+. .++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3344567999999999999999999999999999999998753 357999999999999999999999999999999999
Q ss_pred Eeeccccc
Q 033227 91 YYQQTKMS 98 (124)
Q Consensus 91 ~~~~~~~~ 98 (124)
|+.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99976543
No 13
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.86 E-value=5.8e-21 Score=124.81 Aligned_cols=110 Identities=21% Similarity=0.354 Sum_probs=93.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYL 87 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 87 (124)
.+..+...++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+.. ++..+.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 3344556799999999999999999999999999999998875 44689999999999999999985 9999999999
Q ss_pred EEEEeeccccc--------------cccCcccCHHHHHHHHHHcCCCC
Q 033227 88 IVLYYQQTKMS--------------KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 88 ~v~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.|.++.+.... .+++...++++|.++|+.||...
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 132 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE
Confidence 99998755321 67889999999999999998643
No 14
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=7.9e-21 Score=115.23 Aligned_cols=85 Identities=18% Similarity=0.361 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
..+..++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..||+..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445689999999999999999999999999999998875 4557999999999999999999999999999999999
Q ss_pred Eeeccccc
Q 033227 91 YYQQTKMS 98 (124)
Q Consensus 91 ~~~~~~~~ 98 (124)
|+++....
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99887654
No 15
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3e-20 Score=110.60 Aligned_cols=88 Identities=26% Similarity=0.429 Sum_probs=78.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCC-CCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSK-DTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
...++...++|||+|||+.+++++|+.+|++||.|..+.++.+. .++|||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33445567999999999999999999999999999999988753 35899999999999999999999999999999999
Q ss_pred EEeeccccc
Q 033227 90 LYYQQTKMS 98 (124)
Q Consensus 90 ~~~~~~~~~ 98 (124)
.++.+....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999987654
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.86 E-value=1.2e-20 Score=125.09 Aligned_cols=102 Identities=21% Similarity=0.337 Sum_probs=90.5
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 17 VNRVLYVRNLP-FNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 17 ~~~~l~v~~l~-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
.+++|||+||| ..+++++|+.+|++||.|.++.++.+. +|||||+|.+.++|+.|++.|||..+.|+.|+|.+++..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~--~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK--PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS--TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 47899999999 799999999999999999999998653 699999999999999999999999999999999998532
Q ss_pred cc---------------------------------------------ccccCcccCHHHHHHHHHHcCCC
Q 033227 96 KM---------------------------------------------SKKFDQKKKDDELAKMQEKYGVS 120 (124)
Q Consensus 96 ~~---------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~ 120 (124)
.. ..+++..+++++|.++|++||..
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 81 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp CCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred ccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 10 14677888999999999999965
No 17
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=8.6e-21 Score=114.51 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
+.++|||+|||+.+++++|+++|++||.|..+.++.+ +.++|||||+|.+.++|++|+..|||..+.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3689999999999999999999999999999999876 4568999999999999999999999999999999999987
Q ss_pred ccc
Q 033227 94 QTK 96 (124)
Q Consensus 94 ~~~ 96 (124)
..+
T Consensus 85 ~~~ 87 (110)
T 3s8s_A 85 KGQ 87 (110)
T ss_dssp TTH
T ss_pred CCc
Confidence 654
No 18
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-20 Score=113.16 Aligned_cols=88 Identities=18% Similarity=0.352 Sum_probs=78.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhC------Ccee
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLS------GFNV 82 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~------~~~i 82 (124)
+..+...++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|+ +..+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 334455799999999999999999999999999999999876 4568999999999999999999999 9999
Q ss_pred CCeEEEEEEeecccccc
Q 033227 83 ANRYLIVLYYQQTKMSK 99 (124)
Q Consensus 83 ~g~~l~v~~~~~~~~~~ 99 (124)
.|+.|+|.++.+.....
T Consensus 89 ~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SSCEEEEECCCCCCCCC
T ss_pred cCEEEEEEECCCCccCC
Confidence 99999999998876543
No 19
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.6e-20 Score=111.69 Aligned_cols=87 Identities=20% Similarity=0.289 Sum_probs=75.9
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhC--CceeCCeE
Q 033227 9 GNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLS--GFNVANRY 86 (124)
Q Consensus 9 ~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~i~g~~ 86 (124)
+..+...+++++|||+|||+.+++++|+.+|++||.|..+.++.+ +|||||+|.+.++|..|+..|+ +..+.|++
T Consensus 6 ~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 6 SGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 334555566899999999999999999999999999999988765 6999999999999999999874 67899999
Q ss_pred EEEEEeeccccc
Q 033227 87 LIVLYYQQTKMS 98 (124)
Q Consensus 87 l~v~~~~~~~~~ 98 (124)
|+|.|+++....
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999876543
No 20
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=114.73 Aligned_cols=80 Identities=19% Similarity=0.365 Sum_probs=72.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCC-ceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhC-CceeCCeEEEEEEe
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYG-AIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLS-GFNVANRYLIVLYY 92 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~-~~~i~g~~l~v~~~ 92 (124)
+++|||+|||+.+++++|+++|++|| .|..+.++++ +.++|||||+|.+.++|++|++.++ +..++|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 7999998875 5668999999999999999999874 56899999999999
Q ss_pred ecccc
Q 033227 93 QQTKM 97 (124)
Q Consensus 93 ~~~~~ 97 (124)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 88754
No 21
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.8e-21 Score=112.47 Aligned_cols=85 Identities=27% Similarity=0.405 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
....++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 345799999999999999999999999999999999875 45689999999999999999999999999999999999
Q ss_pred eecccccc
Q 033227 92 YQQTKMSK 99 (124)
Q Consensus 92 ~~~~~~~~ 99 (124)
+.+.+...
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99876543
No 22
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.7e-20 Score=111.90 Aligned_cols=85 Identities=21% Similarity=0.407 Sum_probs=76.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC----CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS----KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYL 87 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 87 (124)
+.+....++|||+|||..+++++|+.+|++|| |..+.++.+ +.++|||||+|.+.++|++|+ .|++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34445579999999999999999999999999 999999876 455899999999999999999 899999999999
Q ss_pred EEEEeeccccc
Q 033227 88 IVLYYQQTKMS 98 (124)
Q Consensus 88 ~v~~~~~~~~~ 98 (124)
+|.++.+....
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999987654
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=110.86 Aligned_cols=83 Identities=23% Similarity=0.428 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
....++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 455789999999999999999999999999999988875 445799999999999999999999999999999999999
Q ss_pred ecccc
Q 033227 93 QQTKM 97 (124)
Q Consensus 93 ~~~~~ 97 (124)
.+...
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87753
No 24
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=110.94 Aligned_cols=85 Identities=18% Similarity=0.345 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
.+....++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+. |++..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 34455799999999999999999999999999999999875 4568999999999999999999 9999999999999
Q ss_pred EEeeccccc
Q 033227 90 LYYQQTKMS 98 (124)
Q Consensus 90 ~~~~~~~~~ 98 (124)
.++.+....
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999987654
No 25
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=112.92 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=78.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
...+...++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 344456799999999999999999999999999999999875 45689999999999999999999999999999999
Q ss_pred EEEeeccccc
Q 033227 89 VLYYQQTKMS 98 (124)
Q Consensus 89 v~~~~~~~~~ 98 (124)
|.++.+....
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999877543
No 26
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=9.6e-21 Score=120.53 Aligned_cols=103 Identities=26% Similarity=0.352 Sum_probs=92.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 96 (124)
++|||+|||+.+++++|+++|++||.|.++.++.+ +.++|||||+|.+.++|..|+..|+|..+.|+.++|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999998765 4558999999999999999999999999999999999997654
Q ss_pred cc----------cccCcccCHHHHHHHHHHcCCCC
Q 033227 97 MS----------KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 97 ~~----------~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.. .+++...++++|.++|++||...
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~ 115 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYL 115 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCee
Confidence 32 78999999999999999998643
No 27
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=3.3e-20 Score=112.43 Aligned_cols=88 Identities=18% Similarity=0.360 Sum_probs=78.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYL 87 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 87 (124)
........++|||+|||..+++++|+.+|+.||.|..+.++.+ +.++|||||+|.+.++|++|+..|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3444556899999999999999999999999999999998875 4558999999999999999999999999999999
Q ss_pred EEEEeeccccc
Q 033227 88 IVLYYQQTKMS 98 (124)
Q Consensus 88 ~v~~~~~~~~~ 98 (124)
+|.|+.+....
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999877554
No 28
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=5.6e-21 Score=117.99 Aligned_cols=83 Identities=19% Similarity=0.392 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMY----DIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
.+++++|||+|||+.+++++|+ .+|++||.|..|.+..++.++|||||+|.+.++|..|+..|||..+.|++|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3457899999999999998865 689999999999988778889999999999999999999999999999999999
Q ss_pred Eeecccc
Q 033227 91 YYQQTKM 97 (124)
Q Consensus 91 ~~~~~~~ 97 (124)
|++....
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9987653
No 29
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=1.4e-20 Score=107.75 Aligned_cols=78 Identities=22% Similarity=0.354 Sum_probs=72.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
.+|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..|+|..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999988865 555899999999999999999999999999999999999876
Q ss_pred c
Q 033227 96 K 96 (124)
Q Consensus 96 ~ 96 (124)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 30
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=110.61 Aligned_cols=83 Identities=28% Similarity=0.442 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
+.+++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999875 456899999999999999999999999999999999999
Q ss_pred eccccc
Q 033227 93 QQTKMS 98 (124)
Q Consensus 93 ~~~~~~ 98 (124)
.+....
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 877553
No 31
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=111.90 Aligned_cols=85 Identities=24% Similarity=0.360 Sum_probs=75.8
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeE--------EEeccC---CCCccEEEEEecCHHHHHHHHHHh
Q 033227 9 GNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQ--------IRIGSS---KDTRGTAFVVYEDIYDAKTAVDHL 77 (124)
Q Consensus 9 ~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l 77 (124)
+...+++...++|||+|||..+++++|+.+|++||.|.. +.++.+ +.++|||||+|.+.++|++|++.|
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 4 HHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp SCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 344555666899999999999999999999999999998 888765 455899999999999999999999
Q ss_pred CCceeCCeEEEEEEee
Q 033227 78 SGFNVANRYLIVLYYQ 93 (124)
Q Consensus 78 ~~~~i~g~~l~v~~~~ 93 (124)
+|..+.|+.|+|.+++
T Consensus 84 ~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 84 DGKEFSGNPIKVSFAT 99 (99)
T ss_dssp TTCBSSSSBCEEEECC
T ss_pred CCCEeCCcEEEEEecC
Confidence 9999999999999874
No 32
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=108.31 Aligned_cols=80 Identities=19% Similarity=0.379 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
+..++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|+.|+..|+|..+.|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 44789999999999999999999999999999998875 455899999999999999999999999999999999998
Q ss_pred ecc
Q 033227 93 QQT 95 (124)
Q Consensus 93 ~~~ 95 (124)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 864
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2e-20 Score=111.35 Aligned_cols=87 Identities=23% Similarity=0.389 Sum_probs=78.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
.......++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 334556799999999999999999999999999999998875 45589999999999999999999999999999999
Q ss_pred EEEeeccccc
Q 033227 89 VLYYQQTKMS 98 (124)
Q Consensus 89 v~~~~~~~~~ 98 (124)
|.++.+....
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999877543
No 34
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=111.92 Aligned_cols=89 Identities=26% Similarity=0.365 Sum_probs=79.3
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC-CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 10 NARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS-KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 10 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
....++...++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34445566899999999999999999999999999999988875 45589999999999999999999999999999999
Q ss_pred EEEeeccccc
Q 033227 89 VLYYQQTKMS 98 (124)
Q Consensus 89 v~~~~~~~~~ 98 (124)
|.++.+....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2d9p_A 87 VALAQRKEER 96 (103)
T ss_dssp EEECSSCCCC
T ss_pred EEEecccccC
Confidence 9999887553
No 35
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=9.4e-21 Score=111.14 Aligned_cols=84 Identities=20% Similarity=0.328 Sum_probs=74.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
.+.++...++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 3444556799999999999999999999999999999998875 45589999999999999999999999999999999
Q ss_pred EEEeec
Q 033227 89 VLYYQQ 94 (124)
Q Consensus 89 v~~~~~ 94 (124)
|.+++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999763
No 36
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-20 Score=111.65 Aligned_cols=87 Identities=23% Similarity=0.431 Sum_probs=77.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC----CCCccEEEEEecCHHHHHHHHHHh-CCceeCCeE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS----KDTRGTAFVVYEDIYDAKTAVDHL-SGFNVANRY 86 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~~~~g~~fv~f~~~~~a~~a~~~l-~~~~i~g~~ 86 (124)
.+.....++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..| ++..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344456799999999999999999999999999999998765 455899999999999999999999 999999999
Q ss_pred EEEEEeeccccc
Q 033227 87 LIVLYYQQTKMS 98 (124)
Q Consensus 87 l~v~~~~~~~~~ 98 (124)
|+|.|+.+....
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999987554
No 37
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.3e-21 Score=113.86 Aligned_cols=82 Identities=15% Similarity=0.285 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSG--FNVANRYLIVLY 91 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~i~g~~l~v~~ 91 (124)
.+...++|||+|||+.+++++|+.+|++||.|.++.++.+ +|||||+|.+.++|..|++.|++ ..+.|++|+|.|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3445899999999999999999999999999999999865 69999999999999999998864 789999999999
Q ss_pred eeccccc
Q 033227 92 YQQTKMS 98 (124)
Q Consensus 92 ~~~~~~~ 98 (124)
++++...
T Consensus 89 A~~~~~~ 95 (105)
T 1sjq_A 89 SNHKELK 95 (105)
T ss_dssp CSSSSCC
T ss_pred cCCCCCC
Confidence 9876543
No 38
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=2.7e-20 Score=107.02 Aligned_cols=79 Identities=29% Similarity=0.412 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
+...++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345799999999999999999999999999999998765 34589999999999999999999999999999999999
Q ss_pred ee
Q 033227 92 YQ 93 (124)
Q Consensus 92 ~~ 93 (124)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=2.8e-20 Score=109.44 Aligned_cols=80 Identities=23% Similarity=0.583 Sum_probs=74.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
+++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 689999999999999999999999999999999876 45589999999999999999999999999999999999988
Q ss_pred ccc
Q 033227 95 TKM 97 (124)
Q Consensus 95 ~~~ 97 (124)
...
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 754
No 40
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=6e-21 Score=112.36 Aligned_cols=77 Identities=18% Similarity=0.340 Sum_probs=69.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCc--eeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCc----eeCCeEEE
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGA--IRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGF----NVANRYLI 88 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~--i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~----~i~g~~l~ 88 (124)
=.+|||+|||+.+++++|+++|++||. +..|++++| +.++|||||+|.+.++|++|++.|||. .++|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 478999999999999999999999995 567888876 566899999999999999999999985 59999999
Q ss_pred EEEeec
Q 033227 89 VLYYQQ 94 (124)
Q Consensus 89 v~~~~~ 94 (124)
|.|++.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999875
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=1.7e-20 Score=112.12 Aligned_cols=89 Identities=18% Similarity=0.276 Sum_probs=79.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCcee---CC
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNV---AN 84 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i---~g 84 (124)
...++...++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|++..+ .|
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 3444556799999999999999999999999999999999875 45689999999999999999999999987 88
Q ss_pred eEEEEEEeecccccc
Q 033227 85 RYLIVLYYQQTKMSK 99 (124)
Q Consensus 85 ~~l~v~~~~~~~~~~ 99 (124)
+.|+|.++.+.....
T Consensus 86 ~~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 86 RPIQVKPADSESRGG 100 (106)
T ss_dssp SCCEEEECCCCSCCC
T ss_pred ceEEEEECCcccccC
Confidence 999999999876543
No 42
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=2.7e-20 Score=113.30 Aligned_cols=79 Identities=18% Similarity=0.335 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
.+..++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|++.|||..+.|+.|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 344689999999999999999999999999999999875 45689999999999999999999999999999999998
Q ss_pred ee
Q 033227 92 YQ 93 (124)
Q Consensus 92 ~~ 93 (124)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 43
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-20 Score=111.94 Aligned_cols=82 Identities=21% Similarity=0.167 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEE
Q 033227 13 LPPEVNRVLYVRNLPF-NISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSG--FNVANRYLIV 89 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~i~g~~l~v 89 (124)
...+++++|||+|||+ .+++++|+.+|++||.|.++.++.+ ++||||+|.+.++|..|+..|++ ..+.|++|+|
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3445589999999999 9999999999999999999999865 48999999999999999999986 4599999999
Q ss_pred EEeecccc
Q 033227 90 LYYQQTKM 97 (124)
Q Consensus 90 ~~~~~~~~ 97 (124)
.|++..+.
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986543
No 44
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=3.1e-20 Score=111.75 Aligned_cols=82 Identities=22% Similarity=0.340 Sum_probs=75.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
...+++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|..|+..|+|..+.|+.|+|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999865 45589999999999999999999999999999999999
Q ss_pred eeccc
Q 033227 92 YQQTK 96 (124)
Q Consensus 92 ~~~~~ 96 (124)
+.+..
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98764
No 45
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=5.5e-20 Score=108.67 Aligned_cols=83 Identities=28% Similarity=0.383 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
...++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44789999999999999999999999999999999875 455899999999999999999999999999999999999
Q ss_pred eccccc
Q 033227 93 QQTKMS 98 (124)
Q Consensus 93 ~~~~~~ 98 (124)
.+....
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987654
No 46
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=110.77 Aligned_cols=86 Identities=27% Similarity=0.421 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
......++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..||+..+.|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 33445799999999999999999999999999999999875 445899999999999999999999999999999999
Q ss_pred EEeeccccc
Q 033227 90 LYYQQTKMS 98 (124)
Q Consensus 90 ~~~~~~~~~ 98 (124)
.++.+....
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999987654
No 47
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=110.13 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCce--eCCeEEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFN--VANRYLIVLY 91 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~--i~g~~l~v~~ 91 (124)
..+++++|||+|||+.+++++|+.+|++||.|.++.++++ +|+|||+|.+.++|.+|+..|++.. +.|++|.|.|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 3445799999999999999999999999999999988753 6899999999999999999999865 7899999999
Q ss_pred eeccc
Q 033227 92 YQQTK 96 (124)
Q Consensus 92 ~~~~~ 96 (124)
+++++
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 98764
No 48
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=5.6e-20 Score=110.42 Aligned_cols=82 Identities=18% Similarity=0.149 Sum_probs=75.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCC-----eE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVAN-----RY 86 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g-----~~ 86 (124)
+++....++|||+|||+.+++++|+.+|.+||.|..+.++.+ |||||+|.+.++|++|++.||+..+.| +.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 444566799999999999999999999999999999999866 799999999999999999999999999 99
Q ss_pred EEEEEeecccc
Q 033227 87 LIVLYYQQTKM 97 (124)
Q Consensus 87 l~v~~~~~~~~ 97 (124)
|+|.++.+...
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999987654
No 49
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=112.43 Aligned_cols=81 Identities=22% Similarity=0.381 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
..+++|||+|||..+++++|+.+|+.||.|..+.++.+ +.++|||||+|.+.++|++|+..|+|..+.|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 44689999999999999999999999999999999876 455899999999999999999999999999999999999
Q ss_pred eccc
Q 033227 93 QQTK 96 (124)
Q Consensus 93 ~~~~ 96 (124)
.+..
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8754
No 50
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.84 E-value=9.3e-21 Score=111.57 Aligned_cols=83 Identities=27% Similarity=0.528 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMY----DIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
.+.+++|||+|||..+++++|+ .+|++||.|..+.+..++.++|||||+|.+.++|..|+..|+|..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457999999999999999999 999999999999988766668999999999999999999999999999999999
Q ss_pred Eeecccc
Q 033227 91 YYQQTKM 97 (124)
Q Consensus 91 ~~~~~~~ 97 (124)
|+.+...
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 9987653
No 51
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=5.7e-20 Score=109.42 Aligned_cols=87 Identities=28% Similarity=0.438 Sum_probs=76.8
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 033227 10 NARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRY 86 (124)
Q Consensus 10 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 86 (124)
....++...++|||+|||..+++++|+.+|++|| |..+.++.+ +.++|||||+|.+.++|++|+ .|++..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 3444556679999999999999999999999997 999998876 445899999999999999999 89999999999
Q ss_pred EEEEEeeccccc
Q 033227 87 LIVLYYQQTKMS 98 (124)
Q Consensus 87 l~v~~~~~~~~~ 98 (124)
|+|.++.+....
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2dng_A 85 LRVDIAEGRKQD 96 (103)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEecCCCCC
Confidence 999999887654
No 52
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=4.2e-20 Score=110.24 Aligned_cols=84 Identities=25% Similarity=0.385 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCC---eEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVAN---RYLIV 89 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g---~~l~v 89 (124)
.+.+++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..|++..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345799999999999999999999999999999998875 4448999999999999999999999999998 99999
Q ss_pred EEeeccccc
Q 033227 90 LYYQQTKMS 98 (124)
Q Consensus 90 ~~~~~~~~~ 98 (124)
.++.+....
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999877543
No 53
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.84 E-value=3.9e-20 Score=106.48 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=68.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
+.-|||+||++.+++++|+++|.+||+|.+++++. ++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 67899999999999999999999999999999875 4799999999999999999999999999999999987
No 54
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=5.7e-20 Score=106.25 Aligned_cols=80 Identities=20% Similarity=0.377 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCC----CccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKD----TRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
.+++|||+|||..+++++|+.+|++||.|..+.++.+.. ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 368999999999999999999999999999999987642 5799999999999999999999999999999999999
Q ss_pred eccc
Q 033227 93 QQTK 96 (124)
Q Consensus 93 ~~~~ 96 (124)
.+.+
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 55
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=5.1e-20 Score=110.04 Aligned_cols=81 Identities=21% Similarity=0.324 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCc--eeCCeEEEEEEe
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF--NVANRYLIVLYY 92 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~--~i~g~~l~v~~~ 92 (124)
.+++++|||+|||+.+++++|+.+|++||.|..+.++.+ +|||||+|.+.++|.+|+..|++. .+.|++|+|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 344789999999999999999999999999999988754 699999999999999999988764 589999999999
Q ss_pred eccccc
Q 033227 93 QQTKMS 98 (124)
Q Consensus 93 ~~~~~~ 98 (124)
++....
T Consensus 89 ~~~~~~ 94 (104)
T 1wex_A 89 TSKRIT 94 (104)
T ss_dssp SSSSCC
T ss_pred cCcccc
Confidence 876544
No 56
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=111.30 Aligned_cols=85 Identities=28% Similarity=0.446 Sum_probs=76.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
..+++.+++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344555799999999999999999999999999999998865 44589999999999999999999999999999999
Q ss_pred EEEeeccc
Q 033227 89 VLYYQQTK 96 (124)
Q Consensus 89 v~~~~~~~ 96 (124)
|.+++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99988763
No 57
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.2e-20 Score=110.89 Aligned_cols=86 Identities=26% Similarity=0.343 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCcee--------EEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCce
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIR--------QIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFN 81 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 81 (124)
......++|||+|||..+++++|+.+|++||.|. .+.++.+ +.++|||||+|.+.++|.+|+..||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3445679999999999999999999999999998 5888775 4558999999999999999999999999
Q ss_pred eCCeEEEEEEeeccccc
Q 033227 82 VANRYLIVLYYQQTKMS 98 (124)
Q Consensus 82 i~g~~l~v~~~~~~~~~ 98 (124)
+.|+.|+|.++++....
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999877543
No 58
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=111.28 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCC------CHHHHHHHhccCCceeEEEecc-CCCCccEEEEEecCHHHHHHHHHHhCCceeCCe-
Q 033227 14 PPEVNRVLYVRNLPFNI------SSEEMYDIFGKYGAIRQIRIGS-SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANR- 85 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~- 85 (124)
....+++|||+|||..+ ++++|+.+|++||.|..+.++. ++.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 33446899999999999 7899999999999999998874 456689999999999999999999999999998
Q ss_pred EEEEEEeeccccc
Q 033227 86 YLIVLYYQQTKMS 98 (124)
Q Consensus 86 ~l~v~~~~~~~~~ 98 (124)
.|+|.++....++
T Consensus 91 ~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 91 TFRVNLFTDFDKY 103 (105)
T ss_dssp EEEEECSCCCCCC
T ss_pred eEEEEEcchHhhh
Confidence 9999999876543
No 59
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=3.6e-21 Score=114.24 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCC-e
Q 033227 16 EVNRVLYVRNLPF------NISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVAN-R 85 (124)
Q Consensus 16 ~~~~~l~v~~l~~------~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g-~ 85 (124)
..+++|||+|||. .+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999999875 4468999999999999999999999999999 9
Q ss_pred EEEEEEeecccccc
Q 033227 86 YLIVLYYQQTKMSK 99 (124)
Q Consensus 86 ~l~v~~~~~~~~~~ 99 (124)
.|+|.++.+...+.
T Consensus 84 ~l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 84 RLFLYTMKDVERYN 97 (100)
T ss_dssp BCEEEESHHHHHHH
T ss_pred EEEEEECchhhhhh
Confidence 99999998876543
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=2.8e-20 Score=108.53 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC-CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS-KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
...+++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..|++..+.|+.|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 445799999999999999999999999999999988763 5568999999999999999999999999999999999998
Q ss_pred cccc
Q 033227 94 QTKM 97 (124)
Q Consensus 94 ~~~~ 97 (124)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 61
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.2e-20 Score=113.21 Aligned_cols=85 Identities=15% Similarity=0.289 Sum_probs=75.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCC--ceeCCeEEE
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSG--FNVANRYLI 88 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~i~g~~l~ 88 (124)
.+...+++++|||+|||+.+++++|+.+|++||.|..+.++.+ +|||||+|.+.++|.+|+..|++ ..+.|++|+
T Consensus 24 ~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 24 SRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp TTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3444555799999999999999999999999999999999865 69999999999999999998884 689999999
Q ss_pred EEEeeccccc
Q 033227 89 VLYYQQTKMS 98 (124)
Q Consensus 89 v~~~~~~~~~ 98 (124)
|.|++++...
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999877554
No 62
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-20 Score=112.21 Aligned_cols=82 Identities=23% Similarity=0.354 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH---HHhccCCceeEEEeccCC------CCccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 033227 15 PEVNRVLYVRNLPFNISSEEMY---DIFGKYGAIRQIRIGSSK------DTRGTAFVVYEDIYDAKTAVDHLSGFNVANR 85 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~---~~f~~~g~i~~~~~~~~~------~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 85 (124)
....++|||+|||+.+++++|+ ++|++||.|..+.++.+. .++|||||+|.+.++|++|+..|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3447899999999999999999 999999999999988753 3469999999999999999999999999999
Q ss_pred EEEEEEeeccc
Q 033227 86 YLIVLYYQQTK 96 (124)
Q Consensus 86 ~l~v~~~~~~~ 96 (124)
.|+|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998775
No 63
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.3e-20 Score=111.18 Aligned_cols=81 Identities=27% Similarity=0.461 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC-CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS-KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
....++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..|+|..+.|+.|+|.++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 344699999999999999999999999999999999875 3458999999999999999999999999999999999988
Q ss_pred cc
Q 033227 94 QT 95 (124)
Q Consensus 94 ~~ 95 (124)
++
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 64
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.84 E-value=4.1e-20 Score=118.61 Aligned_cols=105 Identities=18% Similarity=0.325 Sum_probs=92.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCC-----CCccEEEEEecCHHHHHHHHHHhCCceeC---CeEEE
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSK-----DTRGTAFVVYEDIYDAKTAVDHLSGFNVA---NRYLI 88 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~g~~fv~f~~~~~a~~a~~~l~~~~i~---g~~l~ 88 (124)
..++|||+|||+.+++++|+++|++||.|..+.++.+. .++|||||+|.+.++|.+|+..|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999988753 45799999999999999999999998776 68888
Q ss_pred EEEeeccccc---------cccCcccCHHHHHHHHHHcCCCC
Q 033227 89 VLYYQQTKMS---------KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 89 v~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
+.++.+.... .+++...++++|.++|++||...
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 123 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 123 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEE
Confidence 8888765443 68999999999999999998653
No 65
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.83 E-value=8.9e-20 Score=125.49 Aligned_cols=82 Identities=27% Similarity=0.542 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMY----DIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
...+++|||+|||..+++++|+ .+|+.||.|..|.++.++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3447999999999999999966 899999999999998888889999999999999999999999999999999999
Q ss_pred Eeeccc
Q 033227 91 YYQQTK 96 (124)
Q Consensus 91 ~~~~~~ 96 (124)
|++...
T Consensus 86 ~a~~~~ 91 (282)
T 3pgw_A 86 YAKTDS 91 (282)
T ss_pred EeccCc
Confidence 987644
No 66
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=9.4e-20 Score=108.06 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc--CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
.+...++|||+|||..+++++|+.+|++||.| .++. ++.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 44557999999999999999999999999987 3333 466789999999999999999999999999999999999
Q ss_pred eeccccc
Q 033227 92 YQQTKMS 98 (124)
Q Consensus 92 ~~~~~~~ 98 (124)
+.+....
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9887554
No 67
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=1.7e-20 Score=116.11 Aligned_cols=85 Identities=29% Similarity=0.505 Sum_probs=77.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
...++.+++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..|+|..+.|+.|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344556799999999999999999999999999999999875 45689999999999999999999999999999999
Q ss_pred EEEeeccc
Q 033227 89 VLYYQQTK 96 (124)
Q Consensus 89 v~~~~~~~ 96 (124)
|.|+.+++
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998764
No 68
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-19 Score=109.67 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=76.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYL 87 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 87 (124)
........++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..+++ .+.|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 3444556799999999999999999999999999999999875 45689999999999999999999998 8999999
Q ss_pred EEEEeecccc
Q 033227 88 IVLYYQQTKM 97 (124)
Q Consensus 88 ~v~~~~~~~~ 97 (124)
+|.++.+...
T Consensus 89 ~V~~a~~~~~ 98 (116)
T 2cqd_A 89 NVNLAYLGAK 98 (116)
T ss_dssp EEEESTTTCC
T ss_pred EEEEcccCCC
Confidence 9999976543
No 69
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.3e-20 Score=108.49 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEE-EeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQI-RIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
.+++|||+|||+.+++++|+.+|++||.|..+ .++.+ +.++|||||+|.+.++|++|+..|++..+.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 47899999999999999999999999999988 88765 455899999999999999999999999999999999999
Q ss_pred eccccc
Q 033227 93 QQTKMS 98 (124)
Q Consensus 93 ~~~~~~ 98 (124)
.+....
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 877543
No 70
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-19 Score=109.34 Aligned_cols=85 Identities=18% Similarity=0.305 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
.+...+++|||+|||..+++++|+.+|.+||.|..+.++.+ +.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34455799999999999999999999999999999988765 4457999999999999999999999999999999999
Q ss_pred Eeecccc
Q 033227 91 YYQQTKM 97 (124)
Q Consensus 91 ~~~~~~~ 97 (124)
+++....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9875543
No 71
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=9.9e-20 Score=108.96 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
++...+++|||+|||+.+++++|+.+|.+||.|..+.++.+ +.++|||||+|.+.++|++|+..|+|..+.|+.|+|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34455799999999999999999999999999999988865 4557999999999999999999999999999999999
Q ss_pred Eee
Q 033227 91 YYQ 93 (124)
Q Consensus 91 ~~~ 93 (124)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 975
No 72
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=117.29 Aligned_cols=86 Identities=17% Similarity=0.321 Sum_probs=76.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeE--EEeccC---CCCccEEEEEecCHHHHHHHHHHhCCc----ee
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQ--IRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGF----NV 82 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~----~i 82 (124)
.......++|||+|||+.+++++|+.+|++||.|.. |.++++ +.++|||||+|.+. +|.+|+..|+|. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 334455789999999999999999999999999976 888875 45689999999999 999999999999 99
Q ss_pred CCeEEEEEEeeccccc
Q 033227 83 ANRYLIVLYYQQTKMS 98 (124)
Q Consensus 83 ~g~~l~v~~~~~~~~~ 98 (124)
.|+.|+|.++.+.+..
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999887543
No 73
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=108.80 Aligned_cols=82 Identities=28% Similarity=0.425 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCC------CCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSK------DTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~------~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
.+++|||+|||..+++++|+.+|++||.|..+.++.+. .++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 47899999999999999999999999999999888643 457999999999999999999999999999999999
Q ss_pred Eeeccccc
Q 033227 91 YYQQTKMS 98 (124)
Q Consensus 91 ~~~~~~~~ 98 (124)
++.+....
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99877554
No 74
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=9.2e-20 Score=104.83 Aligned_cols=78 Identities=23% Similarity=0.309 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHL-SGFNVANRYLIVLY 91 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~i~g~~l~v~~ 91 (124)
+.+...++|||+|||..+++++|+.+|++||.|..+.++.+ +|||||+|.+.++|..|+..| ++..+.|+.|+|.|
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 33455789999999999999999999999999999998864 689999999999999999998 99999999999999
Q ss_pred ee
Q 033227 92 YQ 93 (124)
Q Consensus 92 ~~ 93 (124)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 75
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-19 Score=105.23 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=74.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
++.+...++|||+|||+.+++++|+.+|++||.|..+.++ ++||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3445567999999999999999999999999999999987 35999999999999999999999999999999999
Q ss_pred eeccccc
Q 033227 92 YQQTKMS 98 (124)
Q Consensus 92 ~~~~~~~ 98 (124)
+.+....
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9877543
No 76
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.83 E-value=5.8e-20 Score=123.41 Aligned_cols=105 Identities=22% Similarity=0.377 Sum_probs=93.3
Q ss_pred CCCCCCCcEEEEcCCCC-CCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 12 RLPPEVNRVLYVRNLPF-NISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
..+.+.+++|||+|||+ .+++++|+++|++||.|..+.++.+. +|||||+|.+.++|.+|+..|+|..+.|+.|.|.
T Consensus 28 ~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 28 GLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp GGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34445679999999999 99999999999999999999998776 6899999999999999999999999999999999
Q ss_pred Eeeccc----c---------------------------------------ccccCcccCHHHHHHHHHHcC
Q 033227 91 YYQQTK----M---------------------------------------SKKFDQKKKDDELAKMQEKYG 118 (124)
Q Consensus 91 ~~~~~~----~---------------------------------------~~~~~~~~~~~~l~~~~~~~g 118 (124)
++.+.. . ..+++...++++|.++|++||
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 176 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 176 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC
Confidence 987441 0 156788899999999999999
No 77
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-19 Score=107.47 Aligned_cols=87 Identities=15% Similarity=0.228 Sum_probs=73.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
...+...++|||+|||..+++++|+++|+.|+.+.-+.....+.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34455679999999999999999999999886544333323456689999999999999999999999999999999999
Q ss_pred eeccccc
Q 033227 92 YQQTKMS 98 (124)
Q Consensus 92 ~~~~~~~ 98 (124)
+++....
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9987654
No 78
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=6e-20 Score=108.25 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
+++..++|||+|||+.+++++|+.+|++||.|. +.++.+ .++|||||+|.+.++|++|+..|||..+.|+.|+|.++.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 345579999999999999999999999999996 555543 567999999999999999999999999999999999998
Q ss_pred ccc
Q 033227 94 QTK 96 (124)
Q Consensus 94 ~~~ 96 (124)
+.+
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 79
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=105.86 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
++..++|||+|||..+++++|+.+|++||.|..+.++ ++||||+|.+.++|++|+..|++..+.|+.|+|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4457999999999999999999999999999999887 58999999999999999999999999999999999988
Q ss_pred cccc
Q 033227 95 TKMS 98 (124)
Q Consensus 95 ~~~~ 98 (124)
....
T Consensus 80 ~~~~ 83 (90)
T 2dnq_A 80 KSKA 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 80
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-19 Score=106.47 Aligned_cols=80 Identities=25% Similarity=0.373 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEEEe
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVA--NRYLIVLYY 92 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~--g~~l~v~~~ 92 (124)
++..++|||+|||+.+++++|+.+|++||.|..+.+..+ ++||||+|.+.++|++|++.||+..+. |+.|+|.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 344689999999999999999999999999999988754 689999999999999999999999999 999999999
Q ss_pred ecccc
Q 033227 93 QQTKM 97 (124)
Q Consensus 93 ~~~~~ 97 (124)
++...
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 81
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-19 Score=112.39 Aligned_cols=79 Identities=29% Similarity=0.407 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
+....++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|++.|+|..+.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3445799999999999999999999999999999999875 5568999999999999999999999999999999998
Q ss_pred Ee
Q 033227 91 YY 92 (124)
Q Consensus 91 ~~ 92 (124)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 82
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=2e-19 Score=106.14 Aligned_cols=79 Identities=25% Similarity=0.435 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 13 LPPEVNRVLYVRNLPF-NISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
.+.+.+++|||+|||+ .+++++|+.+|++||.|..+.+. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3445679999999998 99999999999999999999884 68999999999999999999999999999999999
Q ss_pred eeccc
Q 033227 92 YQQTK 96 (124)
Q Consensus 92 ~~~~~ 96 (124)
+++..
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87653
No 83
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=7e-20 Score=110.59 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCC-ceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYG-AIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
.++...++|||+|||+.+++++|+++|++|| .|..+.+.. ..++|||||+|.+.++|++|++.|||..+.|+.|+|.+
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4555679999999999999999999999999 899988863 34689999999999999999999999999999999999
Q ss_pred eecc
Q 033227 92 YQQT 95 (124)
Q Consensus 92 ~~~~ 95 (124)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 84
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=107.40 Aligned_cols=81 Identities=27% Similarity=0.363 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.....++|||+|||+.+++++|+.+|++||.|..+.+..+ +|||||+|.+.++|.+|+..|++..+.|+.|+|.++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 3445789999999999999999999999999999998754 6899999999999999999999999999999999998
Q ss_pred cccc
Q 033227 94 QTKM 97 (124)
Q Consensus 94 ~~~~ 97 (124)
+...
T Consensus 88 ~~~~ 91 (99)
T 2cpj_A 88 HSAS 91 (99)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 85
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.82 E-value=2.4e-19 Score=122.57 Aligned_cols=103 Identities=23% Similarity=0.356 Sum_probs=93.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
...++|||+|||+.+++++|+.+|+.||.|..+.+..+ +|||||.|.+.++|..|+..|+|..+.|+.|.|.++.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 44589999999999999999999999999999998644 699999999999999999999999999999999999876
Q ss_pred ccc--cccCcccCHHHHHHHHHHcCCCC
Q 033227 96 KMS--KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 96 ~~~--~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
... .+++...++++|.++|+.||...
T Consensus 97 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 124 (261)
T 3sde_A 97 AALTVKNLSPVVSNELLEQAFSQFGPVE 124 (261)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred CcccccCCCCCCCHHHHHHHHHhcCCeE
Confidence 543 88999999999999999998654
No 86
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.9e-20 Score=108.94 Aligned_cols=79 Identities=19% Similarity=0.371 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
++..+++|||+|||..+++++|+.+|++||.|..+.+. .++|||||+|.+.++|..|+..|+|..+.|+.|+|.|++
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 34457899999999999999999999999999999887 346999999999999999999999999999999999987
Q ss_pred cc
Q 033227 94 QT 95 (124)
Q Consensus 94 ~~ 95 (124)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 87
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.5e-19 Score=104.32 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=74.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
.+++...++|||+|||..+++++|+++|++| .|..+.++.+ +.++|||||+|.+.++|.+|+. |++..+.|+.|.|
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 3445567999999999999999999999999 8999988875 4558999999999999999999 9999999999999
Q ss_pred EEeeccc
Q 033227 90 LYYQQTK 96 (124)
Q Consensus 90 ~~~~~~~ 96 (124)
.++.+..
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9988764
No 88
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=9.7e-20 Score=110.78 Aligned_cols=84 Identities=21% Similarity=0.382 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
.+..++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..|+|..+.|+.|+|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345789999999999999999999999999999998874 556899999999999999999999999999999999999
Q ss_pred eccccc
Q 033227 93 QQTKMS 98 (124)
Q Consensus 93 ~~~~~~ 98 (124)
++....
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 89
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.82 E-value=9.2e-20 Score=120.68 Aligned_cols=104 Identities=20% Similarity=0.353 Sum_probs=91.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
.++|||+|||..+++++|+++|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|++..+.|+.|+|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 489999999999999999999999999999999875 45689999999999999999999999999999999998775
Q ss_pred cccc-------------------cccCcccCHHHHHHHHHHcCCCC
Q 033227 95 TKMS-------------------KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 95 ~~~~-------------------~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.... .+++...++++|.++|++||...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 153 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK 153 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEE
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCee
Confidence 5321 67899999999999999998643
No 90
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=2.2e-19 Score=103.72 Aligned_cols=79 Identities=19% Similarity=0.344 Sum_probs=70.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
..+...++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|++ +++..++|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 34456799999999999999999999999999999998865 5558999999999999999997 5888999999999
Q ss_pred EEe
Q 033227 90 LYY 92 (124)
Q Consensus 90 ~~~ 92 (124)
.++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 91
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.4e-19 Score=105.51 Aligned_cols=86 Identities=12% Similarity=0.285 Sum_probs=76.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYL 87 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 87 (124)
...+....++|||+|||..+++++|+.+|.+||.|..+.++.+ +.++|||||+|.+.++|++|+. ++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 4445566799999999999999999999999999999998875 5558999999999999999999 5789999999
Q ss_pred EEEEeeccccc
Q 033227 88 IVLYYQQTKMS 98 (124)
Q Consensus 88 ~v~~~~~~~~~ 98 (124)
.|.++.+....
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cqg_A 86 DCKLPNSKQSQ 96 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEEecCCCCcC
Confidence 99999887654
No 92
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.82 E-value=7.5e-20 Score=116.77 Aligned_cols=103 Identities=14% Similarity=0.312 Sum_probs=91.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.+++|||+|||+.+++++|+++|++||.|..+.++.+ +.++|||||+|.+.++|.+|+. ++..+.|+.+.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 3689999999999999999999999999999999875 5568999999999999999999 4678999999999987
Q ss_pred ccccc--------cccCcccCHHHHHHHHHHcCCCC
Q 033227 94 QTKMS--------KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 94 ~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
+.... .+++...++++|.++|++||...
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~ 115 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTII 115 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCS
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEE
Confidence 65432 78999999999999999998654
No 93
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=108.31 Aligned_cols=81 Identities=17% Similarity=0.320 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
+...++|||+|||..+++++|+.+|++||.|..+.++.+ +|||||+|.+.++|.+|+..|+|..+.|+.|+|.|+++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 344789999999999999999999999999999999866 68999999999999999999999999999999999998
Q ss_pred cccc
Q 033227 95 TKMS 98 (124)
Q Consensus 95 ~~~~ 98 (124)
....
T Consensus 99 ~~~~ 102 (109)
T 1x4g_A 99 SPDM 102 (109)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 94
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=1.3e-19 Score=108.92 Aligned_cols=78 Identities=31% Similarity=0.581 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
+...++|||+|||..+++++|+.+|++||.|..+.+. +|||||+|.+.++|++|+..|+|..+.|+.|+|.++++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3446999999999999999999999999999999887 68999999999999999999999999999999999987
Q ss_pred ccc
Q 033227 95 TKM 97 (124)
Q Consensus 95 ~~~ 97 (124)
...
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 95
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=108.46 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=77.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYL 87 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 87 (124)
....++..++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+.. ++..+.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 3445566799999999999999999999999999999998875 45589999999999999999998 9999999999
Q ss_pred EEEEeeccccc
Q 033227 88 IVLYYQQTKMS 98 (124)
Q Consensus 88 ~v~~~~~~~~~ 98 (124)
+|.++.+....
T Consensus 88 ~V~~a~~~~~~ 98 (105)
T 2dh8_A 88 DPKPCTPRGMQ 98 (105)
T ss_dssp BCCCSCCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999877643
No 96
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=3.6e-19 Score=109.23 Aligned_cols=84 Identities=23% Similarity=0.350 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
....+++|||+|||..+++++|+.+|+.||.|..+.+..+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3455789999999999999999999999999999988775 45689999999999999999999999999999999999
Q ss_pred eecccc
Q 033227 92 YQQTKM 97 (124)
Q Consensus 92 ~~~~~~ 97 (124)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987643
No 97
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=1.9e-19 Score=108.39 Aligned_cols=82 Identities=13% Similarity=0.304 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
+..+++|||+|||..+++++|+.+|+.||.|..+.++.+ +.++|||||+|.+.++|.+|+..+ +..+.|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 344699999999999999999999999999999999875 566899999999999999999975 5999999999999
Q ss_pred eecccc
Q 033227 92 YQQTKM 97 (124)
Q Consensus 92 ~~~~~~ 97 (124)
+.+...
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987754
No 98
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=1.3e-19 Score=111.44 Aligned_cols=83 Identities=22% Similarity=0.364 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
...+++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..|||..+.|+.|+|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 344689999999999999999999999999999999865 44589999999999999999999999999999999999
Q ss_pred eecccc
Q 033227 92 YQQTKM 97 (124)
Q Consensus 92 ~~~~~~ 97 (124)
+.+...
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 987654
No 99
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-19 Score=112.03 Aligned_cols=85 Identities=28% Similarity=0.522 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCC---CCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSK---DTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
.+...++|||+|||..+++++|+.+|+.||.|..+.++.+. .++|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456899999999999999999999999999999998763 458999999999999999999999999999999999
Q ss_pred Eeeccccc
Q 033227 91 YYQQTKMS 98 (124)
Q Consensus 91 ~~~~~~~~ 98 (124)
++++....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99977654
No 100
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=5.1e-19 Score=105.31 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
....++|||+|||+.+++++|+.+|++||.|..+.++ ++||||+|.+.++|++|+..|++..+.|+.|+|.++.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 3447899999999999999999999999999999886 46999999999999999999999999999999999987
Q ss_pred cccc
Q 033227 95 TKMS 98 (124)
Q Consensus 95 ~~~~ 98 (124)
....
T Consensus 83 ~~~~ 86 (103)
T 2dgu_A 83 PDQK 86 (103)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7554
No 101
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.2e-19 Score=103.43 Aligned_cols=80 Identities=26% Similarity=0.339 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccC--CceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKY--GAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
.....++|||+|||+.+++++|+.+|++| |.|..+.+. +|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34457899999999999999999999999 899988875 57999999999999999999999999999999999
Q ss_pred eeccccc
Q 033227 92 YQQTKMS 98 (124)
Q Consensus 92 ~~~~~~~ 98 (124)
+++....
T Consensus 86 a~~~~~~ 92 (99)
T 2cpd_A 86 AKPVDKD 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9987543
No 102
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.8e-19 Score=107.58 Aligned_cols=82 Identities=20% Similarity=0.409 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCcee--------C
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNV--------A 83 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i--------~ 83 (124)
.....++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3455789999999999999999999999999999998875 44589999999999999999999999998 5
Q ss_pred CeEEEEEEeecc
Q 033227 84 NRYLIVLYYQQT 95 (124)
Q Consensus 84 g~~l~v~~~~~~ 95 (124)
+++|.|.|+.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998865
No 103
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=3.5e-20 Score=109.92 Aligned_cols=83 Identities=23% Similarity=0.436 Sum_probs=70.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC----CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS----KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYL 87 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 87 (124)
..+....++|||+|||..+++++|+.+|+.|| |..+.++.+ +.++|||||+|.+.++|.+|+ .|+|..+.|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34445579999999999999999999999999 999999865 445899999999999999999 799999999999
Q ss_pred EEEEeeccc
Q 033227 88 IVLYYQQTK 96 (124)
Q Consensus 88 ~v~~~~~~~ 96 (124)
+|.++.+..
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999988753
No 104
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=9.9e-20 Score=106.99 Aligned_cols=85 Identities=21% Similarity=0.405 Sum_probs=74.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
........++|||+|||..+++++|+.+|++||.|..+ ...+.++|||||+|.+.++|..|+..|+|..+.|+.|+|.
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33444557999999999999999999999999998776 4456678999999999999999999999999999999999
Q ss_pred Eeecccc
Q 033227 91 YYQQTKM 97 (124)
Q Consensus 91 ~~~~~~~ 97 (124)
++.+...
T Consensus 87 ~a~~~~~ 93 (96)
T 1fjc_A 87 YTGEKGG 93 (96)
T ss_dssp ECSSSCC
T ss_pred EcCCCCC
Confidence 9987653
No 105
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=1.2e-19 Score=110.70 Aligned_cols=84 Identities=21% Similarity=0.274 Sum_probs=74.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCc---eeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGA---IRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANR 85 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 85 (124)
..+++...++|||+|||+.+++++|+.+|+.||. |..+.++.+ +.++|||||+|.+.++|++|+. +++..+.|+
T Consensus 10 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 10 LGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp SSSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred cCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 3445566799999999999999999999999999 788888764 5668999999999999999999 999999999
Q ss_pred EEEEEEeecc
Q 033227 86 YLIVLYYQQT 95 (124)
Q Consensus 86 ~l~v~~~~~~ 95 (124)
.|+|.++...
T Consensus 89 ~i~V~~a~~~ 98 (118)
T 2db1_A 89 YIEVFKSHRT 98 (118)
T ss_dssp EEEEEEECHH
T ss_pred EEEEEECCHH
Confidence 9999998654
No 106
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=3.7e-19 Score=113.13 Aligned_cols=83 Identities=30% Similarity=0.479 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
...++|||+|||..+++++|+.+|++||.|..|.++.+ +.++|||||+|.+.++|++|+..|++..|.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45799999999999999999999999999999999876 445799999999999999999999999999999999999
Q ss_pred eccccc
Q 033227 93 QQTKMS 98 (124)
Q Consensus 93 ~~~~~~ 98 (124)
.+....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876543
No 107
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=106.92 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCcee-EEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeE----
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIR-QIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRY---- 86 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~-~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~---- 86 (124)
....++|||+|||+.+++++|+.+|++||.|. .+.++.+ +.++|||||+|.+.++|++|+..|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34579999999999999999999999999999 9988875 455799999999999999999999999999988
Q ss_pred EEEEEeeccc
Q 033227 87 LIVLYYQQTK 96 (124)
Q Consensus 87 l~v~~~~~~~ 96 (124)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999988764
No 108
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=106.70 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc---CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS---SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
..+..++|||+|||+.+++++|+.+|.+||.|..+.++. ++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 344568999999999999999999999999997655544 34568999999999999999999999999999999999
Q ss_pred Eeecc
Q 033227 91 YYQQT 95 (124)
Q Consensus 91 ~~~~~ 95 (124)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 109
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=1.9e-19 Score=113.77 Aligned_cols=81 Identities=31% Similarity=0.407 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.....++|||+|||+.+++++|+.+|++||.|..+.++.+ ++|||||+|.+.++|..|+..|||..+.|+.|+|.|+.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 3445799999999999999999999999999999999876 57999999999999999999999999999999999998
Q ss_pred ccc
Q 033227 94 QTK 96 (124)
Q Consensus 94 ~~~ 96 (124)
+.+
T Consensus 147 ~~~ 149 (150)
T 2i2y_A 147 GEK 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 110
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=2.9e-19 Score=103.48 Aligned_cols=77 Identities=21% Similarity=0.373 Sum_probs=71.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
.++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+ .|+|..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999988865 455899999999999999999 8999999999999999876
Q ss_pred c
Q 033227 95 T 95 (124)
Q Consensus 95 ~ 95 (124)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 111
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5e-20 Score=109.92 Aligned_cols=79 Identities=23% Similarity=0.472 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
...++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 34689999999999999999999999999999999875 5578999999999999999999 89999999999999977
Q ss_pred cc
Q 033227 94 QT 95 (124)
Q Consensus 94 ~~ 95 (124)
..
T Consensus 88 ~~ 89 (103)
T 1s79_A 88 DY 89 (103)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 112
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=115.13 Aligned_cols=80 Identities=13% Similarity=0.229 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCC--ceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYG--AIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
..++|||+|||+.+++++|+.+|+.|| .|..+.++.+ +.++|||||+|.+.++|++|+..|||..+.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357999999999999999999999999 8999998865 55689999999999999999999999999999999999
Q ss_pred eeccc
Q 033227 92 YQQTK 96 (124)
Q Consensus 92 ~~~~~ 96 (124)
+.+..
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97654
No 113
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7.8e-20 Score=108.89 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=76.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhcc-CCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCce-eCCeEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGK-YGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFN-VANRYLIV 89 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~-i~g~~l~v 89 (124)
++...++|||+|||+.+++++|+.+|++ ||.|..+.++.+ +.++|||||+|.+.++|.+|+..|++.. +.|+.|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 3455799999999999999999999999 999999998875 4458999999999999999999999999 99999999
Q ss_pred EEeeccccc
Q 033227 90 LYYQQTKMS 98 (124)
Q Consensus 90 ~~~~~~~~~ 98 (124)
.++.+....
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999876543
No 114
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-20 Score=112.69 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccc
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 96 (124)
.+++|||+|||..+++++|+.+|++||.|..+.++. +++||||+|.+.++|+.|+..|||..+.|+.|+|.|+....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 368999999999999999999999999999998874 46899999999999999999999999999999999998754
Q ss_pred c
Q 033227 97 M 97 (124)
Q Consensus 97 ~ 97 (124)
.
T Consensus 86 ~ 86 (111)
T 1whx_A 86 F 86 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 115
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.9e-20 Score=108.99 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=67.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCC--ceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYG--AIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.+|||+|||..+++++|+++|++|| .|..+.++.+ +.++|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 8999988775 5668999999999999999999999999999999999988
Q ss_pred ccc
Q 033227 94 QTK 96 (124)
Q Consensus 94 ~~~ 96 (124)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 764
No 116
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=5.5e-19 Score=106.31 Aligned_cols=79 Identities=27% Similarity=0.405 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 14 PPEVNRVLYVRNLPFN-ISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
+...+++|||+|||+. +++++|+.+|++||.|..+.+ +++||||+|.+.++|++|+..|++..+.|+.|+|.++
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3344689999999999 999999999999999999988 4689999999999999999999999999999999999
Q ss_pred ecccc
Q 033227 93 QQTKM 97 (124)
Q Consensus 93 ~~~~~ 97 (124)
.+.+.
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 85543
No 117
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.6e-19 Score=106.86 Aligned_cols=78 Identities=27% Similarity=0.437 Sum_probs=72.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
++|||+|||..+++++|+.+|+.||.|..+.++.+ +.++|||||+|.+.++|++|+ .|++..+.|+.|+|.++.+.
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 79999999999999999999999999999999875 455899999999999999999 89999999999999998876
Q ss_pred cc
Q 033227 96 KM 97 (124)
Q Consensus 96 ~~ 97 (124)
..
T Consensus 105 ~~ 106 (114)
T 2cq4_A 105 KN 106 (114)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 118
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5e-19 Score=102.90 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
++...++|||+|||+.+++++|+.+|++||.|..+.++ ++||||+|.+.++|++|+..|+|..+.|+.|+|.++.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 34457899999999999999999999999999999987 3599999999999999999999999999999999998
Q ss_pred cccc
Q 033227 94 QTKM 97 (124)
Q Consensus 94 ~~~~ 97 (124)
+...
T Consensus 80 ~~~~ 83 (90)
T 2dnp_A 80 KGQK 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7754
No 119
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.5e-19 Score=105.11 Aligned_cols=86 Identities=19% Similarity=0.337 Sum_probs=75.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeE-EEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 033227 11 ARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQ-IRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYL 87 (124)
Q Consensus 11 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 87 (124)
..++....++|||+|||+.+++++|+++|++||.|.. +.++.+ +.++|||||+|.+.++|++|+.. ++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i 86 (104)
T 1wg5_A 8 NSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYI 86 (104)
T ss_dssp CCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEE
Confidence 3444566799999999999999999999999999987 777764 56689999999999999999997 9999999999
Q ss_pred EEEEeecccc
Q 033227 88 IVLYYQQTKM 97 (124)
Q Consensus 88 ~v~~~~~~~~ 97 (124)
.|.++.+...
T Consensus 87 ~v~~~~~~~~ 96 (104)
T 1wg5_A 87 EIFKSSRAEV 96 (104)
T ss_dssp EEEEECTTTS
T ss_pred EEEECCHHHH
Confidence 9999876543
No 120
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=6.3e-19 Score=112.16 Aligned_cols=83 Identities=31% Similarity=0.447 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
....++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|..|+..|||..+.|+.|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 344689999999999999999999999999999999875 56689999999999999999999999999999999999
Q ss_pred eecccc
Q 033227 92 YQQTKM 97 (124)
Q Consensus 92 ~~~~~~ 97 (124)
+.+.+.
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 987654
No 121
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=108.32 Aligned_cols=83 Identities=23% Similarity=0.460 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCce----eEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAI----RQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
.+.+++|||+|||..+++++|+.+|++||.| ..+.+. .+.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3457999999999999999999999999998 445544 67778999999999999999999999999999999999
Q ss_pred Eeeccccc
Q 033227 91 YYQQTKMS 98 (124)
Q Consensus 91 ~~~~~~~~ 98 (124)
|+.+....
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99987654
No 122
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=6.2e-20 Score=114.41 Aligned_cols=85 Identities=31% Similarity=0.425 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
+++...++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..|+|..+.|+.|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33445689999999999999999999999999999999865 456899999999999999999999999999999999
Q ss_pred EEeecccc
Q 033227 90 LYYQQTKM 97 (124)
Q Consensus 90 ~~~~~~~~ 97 (124)
.++++.+.
T Consensus 122 ~~a~~~~~ 129 (135)
T 2lea_A 122 QMARYGRP 129 (135)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 123
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=108.27 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=73.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCce-eEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAI-RQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i-~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
..+...++|||+|||+.+++++|+.+|+.||.| ..+.++.+ +.++|||||+|.+.++|++|+.. ++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 344557999999999999999999999999999 77888765 45689999999999999999996 999999999999
Q ss_pred EEeeccc
Q 033227 90 LYYQQTK 96 (124)
Q Consensus 90 ~~~~~~~ 96 (124)
.++.+..
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9988664
No 124
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-20 Score=106.76 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
+..+++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 345789999999999999999999999999999998875 45589999999999999999999999999999988766
Q ss_pred ee
Q 033227 92 YQ 93 (124)
Q Consensus 92 ~~ 93 (124)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 125
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=7.6e-19 Score=112.74 Aligned_cols=82 Identities=22% Similarity=0.328 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
..+++|||+|||+.+++.+|+.+|++||.|..|.++.+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 44689999999999999999999999999999998865 445899999999999999999999999999999999999
Q ss_pred ecccc
Q 033227 93 QQTKM 97 (124)
Q Consensus 93 ~~~~~ 97 (124)
.+...
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 87654
No 126
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=1.3e-19 Score=106.23 Aligned_cols=78 Identities=26% Similarity=0.287 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..||+..+.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3689999999999999999999999999987666543 4558999999999999999999999999999999999875
Q ss_pred c
Q 033227 94 Q 94 (124)
Q Consensus 94 ~ 94 (124)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 127
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.80 E-value=9.1e-20 Score=117.34 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=90.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEe--ccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRI--GSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~--~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
+++...++|||+|||..+++++|+.+|.+||.+..+.+ ...+.++|||||+|.+.++|.+|++ |+|..+.|+.|+|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 45566899999999999999999999999987655222 2246678999999999999999995 99999999999999
Q ss_pred Eeeccccc----------cccCcccCHHHHHHHHHHcCC
Q 033227 91 YYQQTKMS----------KKFDQKKKDDELAKMQEKYGV 119 (124)
Q Consensus 91 ~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~ 119 (124)
++.+.... .+++...++++|.++|+++|.
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~ 125 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALE 125 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSE
T ss_pred cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCe
Confidence 99865332 778999999999999999874
No 128
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.8e-20 Score=109.11 Aligned_cols=81 Identities=27% Similarity=0.432 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4589999999999999999999999999999988865 4458999999999999999999999999999999999998
Q ss_pred cccc
Q 033227 94 QTKM 97 (124)
Q Consensus 94 ~~~~ 97 (124)
+...
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7654
No 129
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=111.93 Aligned_cols=83 Identities=23% Similarity=0.418 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeE--------EEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQ--------IRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRY 86 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 86 (124)
...+++|||+|||+.+++++|+.+|++||.|.. +.+..++.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 445789999999999999999999999998865 444556788999999999999999999999999999999
Q ss_pred EEEEEeecccc
Q 033227 87 LIVLYYQQTKM 97 (124)
Q Consensus 87 l~v~~~~~~~~ 97 (124)
|+|.++++...
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999986543
No 130
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.80 E-value=3.7e-19 Score=116.69 Aligned_cols=99 Identities=22% Similarity=0.416 Sum_probs=90.0
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccc
Q 033227 18 NRVLYVRNLPF-NISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 18 ~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 96 (124)
+++|||+|||+ .+++++|+.+|++||.|..+.++.+. +|||||+|.+.++|..|+..|+|..+.|+.|.|.++.+..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 68999999999 99999999999999999999998775 6899999999999999999999999999999999987431
Q ss_pred c-------------------------------------------ccccCcccCHHHHHHHHHHcC
Q 033227 97 M-------------------------------------------SKKFDQKKKDDELAKMQEKYG 118 (124)
Q Consensus 97 ~-------------------------------------------~~~~~~~~~~~~l~~~~~~~g 118 (124)
. ..+++...++++|.++|++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G 145 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 145 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTT
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcC
Confidence 0 256788899999999999999
No 131
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=107.29 Aligned_cols=78 Identities=29% Similarity=0.370 Sum_probs=72.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccccc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKMS 98 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~~ 98 (124)
++|||+|||+.+++++|+.+|++||.|..+.++.+ ++|||||+|.+.++|++|+..|++..+.|+.|+|.++.+....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999877 6799999999999999999999999999999999999877543
No 132
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.80 E-value=8.2e-19 Score=121.19 Aligned_cols=103 Identities=16% Similarity=0.216 Sum_probs=91.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCC-CCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSK-DTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
+...++|||+|||+.+++++|+.+|+.||.|..+.++.+. .++|||||+|.+.++|.+|+. ++|..+.|+.|.|.++.
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC
Confidence 3457999999999999999999999999999999998753 247999999999999999996 89999999999999987
Q ss_pred ccccc-cccCcccCHHHHHHHHHHcC
Q 033227 94 QTKMS-KKFDQKKKDDELAKMQEKYG 118 (124)
Q Consensus 94 ~~~~~-~~~~~~~~~~~l~~~~~~~g 118 (124)
....+ .+++...++++|.++|+.+|
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G 142 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDIN 142 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhC
Confidence 66554 88999999999999999999
No 133
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=108.37 Aligned_cols=80 Identities=18% Similarity=0.341 Sum_probs=73.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
.++|||+|||+.+++++|+.+|.+||.|..+.++.+ +.++|||||+|.+.++|++|+.. ++..+.|+.|+|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 389999999999999999999999999999998875 45689999999999999999997 99999999999999988
Q ss_pred cccc
Q 033227 95 TKMS 98 (124)
Q Consensus 95 ~~~~ 98 (124)
....
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 7654
No 134
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.79 E-value=1.9e-18 Score=118.98 Aligned_cols=101 Identities=18% Similarity=0.333 Sum_probs=91.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccc
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 96 (124)
..++|||+|||+.+++++|+.+|+.|| |..+.+ +.++|||||+|.+.++|..|+..|+|..+.|+.|.|.+..+..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 96 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDA 96 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCC
Confidence 368999999999999999999999999 888887 4567999999999999999999999999999999999987654
Q ss_pred c--ccccCcccCHHHHHHHHHHcCCCC
Q 033227 97 M--SKKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 97 ~--~~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
. ..+++...++++|.++|+.||...
T Consensus 97 ~l~v~nlp~~~t~~~l~~~f~~~G~i~ 123 (284)
T 3smz_A 97 LLCVANLPPSLTQQQFEELVRPFGSLE 123 (284)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred EEEEcCCCCcCCHHHHHHHHHhcCCee
Confidence 3 389999999999999999998643
No 135
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8e-19 Score=103.07 Aligned_cols=83 Identities=25% Similarity=0.412 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEE-EeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQI-RIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
++...+++|||+|||+.+++++|+.+|++||.|..+ .++.+..+ +.|||+|.+.++|..|+..|||..+.|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~-~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET-AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS-EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC-CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 344457899999999999999999999999999999 47766543 4599999999999999999999999999999999
Q ss_pred eeccc
Q 033227 92 YQQTK 96 (124)
Q Consensus 92 ~~~~~ 96 (124)
+.+..
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98773
No 136
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.6e-18 Score=100.58 Aligned_cols=80 Identities=28% Similarity=0.420 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.+...++|||+|+ .+++++|+.+|++||.|..+.+. .++|||||+|.+.++|.+|+..|++..+.|+.|+|.|+.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 3455799999996 89999999999999999999884 457999999999999999999999999999999999998
Q ss_pred ccccc
Q 033227 94 QTKMS 98 (124)
Q Consensus 94 ~~~~~ 98 (124)
+....
T Consensus 86 ~~~~~ 90 (97)
T 1x5p_A 86 KQPML 90 (97)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 77554
No 137
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.9e-19 Score=105.93 Aligned_cols=79 Identities=15% Similarity=0.239 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
.....+|||+|||+.+++++|+++|+.| .|..|.++.+ ++++|||||+|.+.++|++|+ .+|+..++|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3345899999999999999999999999 7889988864 566899999999999999999 58999999999999887
Q ss_pred ecc
Q 033227 93 QQT 95 (124)
Q Consensus 93 ~~~ 95 (124)
.+.
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 543
No 138
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=103.69 Aligned_cols=80 Identities=25% Similarity=0.361 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCc-eeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCC-ceeCCeEEEEEEe
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGA-IRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSG-FNVANRYLIVLYY 92 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~-~~i~g~~l~v~~~ 92 (124)
+...++|||+|||+.+++++|+.+|++||. |..+.+. ++|||||+|.+.++|++|+..||| ..+.|+.|+|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 345789999999999999999999999999 6655552 368999999999999999999999 9999999999999
Q ss_pred eccccc
Q 033227 93 QQTKMS 98 (124)
Q Consensus 93 ~~~~~~ 98 (124)
.+....
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 877543
No 139
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=107.06 Aligned_cols=80 Identities=26% Similarity=0.345 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFN-ISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSG--FNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~i~g~~l~v~~ 91 (124)
..++++|||+|||+. +++++|+.+|++||.|.++.+++ ++|||||+|.+.++|..|+..|++ ..+.|+.|+|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 445799999999998 99999999999999999999874 369999999999999999998864 568999999999
Q ss_pred eecccc
Q 033227 92 YQQTKM 97 (124)
Q Consensus 92 ~~~~~~ 97 (124)
+...+.
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 987654
No 140
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.2e-19 Score=105.50 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=73.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCc-eeEEEec-cC---CCCccEEEEEecCHHHHHHHHHHhC--CceeCCeEEEE
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGA-IRQIRIG-SS---KDTRGTAFVVYEDIYDAKTAVDHLS--GFNVANRYLIV 89 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~-~~---~~~~g~~fv~f~~~~~a~~a~~~l~--~~~i~g~~l~v 89 (124)
..++|||+|||+.+++++|+.+|.+||. |..+.++ .+ +.++|||||+|.+.++|..|+..|+ +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4789999999999999999999999998 9999887 44 3568999999999999999999996 58999999999
Q ss_pred EEeecccc
Q 033227 90 LYYQQTKM 97 (124)
Q Consensus 90 ~~~~~~~~ 97 (124)
.|+.+...
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987754
No 141
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.79 E-value=1.6e-18 Score=119.34 Aligned_cols=105 Identities=19% Similarity=0.296 Sum_probs=94.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.+++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4689999999999999999999999999999988764 4568999999999999999999999999999999999998
Q ss_pred ccccc-----------cccCccc-CHHHHHHHHHHcCCCC
Q 033227 94 QTKMS-----------KKFDQKK-KDDELAKMQEKYGVST 121 (124)
Q Consensus 94 ~~~~~-----------~~~~~~~-~~~~l~~~~~~~g~~~ 121 (124)
+.... .+++..+ ++++|.++|+.||...
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~ 213 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPT 213 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCS
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeE
Confidence 76532 7788885 9999999999999654
No 142
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.2e-19 Score=107.95 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=71.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEec---cCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIG---SSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~---~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
.+....++|||+|||+.+++++|+.+|..||.|..+.++ .++.++|||||+|.+.++|.+|+. ||+..+.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 445567999999999999999999999999998763222 346668999999999999999999 9999999999999
Q ss_pred EEeeccc
Q 033227 90 LYYQQTK 96 (124)
Q Consensus 90 ~~~~~~~ 96 (124)
.++.+..
T Consensus 99 ~~a~~~~ 105 (124)
T 1wel_A 99 HPITKKG 105 (124)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987653
No 143
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=4e-19 Score=110.82 Aligned_cols=83 Identities=20% Similarity=0.249 Sum_probs=73.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCc---eeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGA---IRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRY 86 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 86 (124)
.+++...++|||+|||+.+++++|+++|++||. |..|.++.+ +.++|||||+|.+.++|++|+. +++..+.|+.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 345566799999999999999999999999999 778888764 5668999999999999999999 9999999999
Q ss_pred EEEEEeecc
Q 033227 87 LIVLYYQQT 95 (124)
Q Consensus 87 l~v~~~~~~ 95 (124)
|+|.++.+.
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999997654
No 144
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=7.3e-19 Score=103.40 Aligned_cols=77 Identities=26% Similarity=0.433 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 16 EVNRVLYVRNLPF-NISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 16 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
+..++|||+|||+ .+++++|+.+|++||.|..+.+. +|||||+|.+.++|..|+..|+|..+.|+.|+|.++++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 4478999999998 99999999999999999999884 68999999999999999999999999999999999987
Q ss_pred ccc
Q 033227 95 TKM 97 (124)
Q Consensus 95 ~~~ 97 (124)
...
T Consensus 83 ~~~ 85 (96)
T 2kvi_A 83 NAR 85 (96)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 145
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=2.9e-19 Score=102.04 Aligned_cols=72 Identities=25% Similarity=0.362 Sum_probs=65.4
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhccCCceeEEEecc-CCCCccEEEEEecCHHHHHHHHHHhCCceeCCe-EEEE
Q 033227 18 NRVLYVRNLPFNI------SSEEMYDIFGKYGAIRQIRIGS-SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANR-YLIV 89 (124)
Q Consensus 18 ~~~l~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~-~l~v 89 (124)
+++|||+|||..+ ++++|+.+|++||.|..+.++. ++.++|||||+|.+.++|.+|+..|||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4789999999999 6799999999999999998874 456689999999999999999999999999998 8765
No 146
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=103.55 Aligned_cols=84 Identities=18% Similarity=0.358 Sum_probs=72.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
...+...++|||+|||+.+++++|+++|++||.+ .+.++.+ +.++|||||+|.+.++|++|+. +|+..+.++.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 3445557899999999999999999999999955 8888765 4558999999999999999995 7999999999999
Q ss_pred EEeecccc
Q 033227 90 LYYQQTKM 97 (124)
Q Consensus 90 ~~~~~~~~ 97 (124)
.++.+...
T Consensus 87 ~~~~~~~~ 94 (102)
T 1wez_A 87 FLNSTAGT 94 (102)
T ss_dssp EEECCCCC
T ss_pred EECCCCCC
Confidence 98876543
No 147
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.78 E-value=2.9e-18 Score=109.81 Aligned_cols=101 Identities=22% Similarity=0.410 Sum_probs=88.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccC----C-------ceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKY----G-------AIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANR 85 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 85 (124)
..++|||+|||+.+++++|+++|++| | .|..+.+. .++|||||+|.+.++|.+|+ .|+|..+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 36899999999999999999999999 6 66666664 34799999999999999999 7999999999
Q ss_pred EEEEEEeecccc--------ccccCcccCHHHHHHHHHHcCCCC
Q 033227 86 YLIVLYYQQTKM--------SKKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 86 ~l~v~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.++|.++.+... ..+++...++++|.++|++||...
T Consensus 79 ~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 79 SLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp ECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred eeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 999999876533 178899999999999999998643
No 148
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=1.5e-18 Score=110.90 Aligned_cols=83 Identities=23% Similarity=0.271 Sum_probs=72.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVAN--RYLIVL 90 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~ 90 (124)
+++..-..|||+||++.+++++|+.+|++||.|.+|.+... .++|||||+|.+.++|+.|++.|||..|.| +.|+|.
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34444467899999999999999999999999999988643 357899999999999999999999999965 999999
Q ss_pred Eeeccc
Q 033227 91 YYQQTK 96 (124)
Q Consensus 91 ~~~~~~ 96 (124)
|+++..
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 999764
No 149
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=1.4e-18 Score=106.49 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=72.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
.++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+ .|+|..+.|+.|+|.++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 389999999999999999999999999999988764 566899999999999999999 7999999999999999886
Q ss_pred cc
Q 033227 95 TK 96 (124)
Q Consensus 95 ~~ 96 (124)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 150
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=4.1e-19 Score=99.88 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=66.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 20 VLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 20 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
+|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|++ +++..+.|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4899999999999999999999999999988875 4568999999999999999998 8999999999999874
No 151
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=106.31 Aligned_cols=81 Identities=19% Similarity=0.146 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEecc---CCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGS---SKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
+...++|||+|||..+++++|+.+|++||.|.. .++. .+.++|||||+|.+.++|++|++ |++..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999876 3333 35678999999999999999999 999999999999999
Q ss_pred eecccc
Q 033227 92 YQQTKM 97 (124)
Q Consensus 92 ~~~~~~ 97 (124)
+.+...
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987654
No 152
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=1.2e-19 Score=105.46 Aligned_cols=78 Identities=23% Similarity=0.416 Sum_probs=69.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
++|||+|||..+++++|+++|++||.|..+.++.+ +.++|||||+|.+.+ |.+|+..|||..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999875 556899999999999 99999999999999999999999876
Q ss_pred cc
Q 033227 96 KM 97 (124)
Q Consensus 96 ~~ 97 (124)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 153
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=3.6e-19 Score=106.75 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=74.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCc---eeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGA---IRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRY 86 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 86 (124)
..+....++|||+|||+.+++++|+.+|+.||. |..+.++.+ +.++|||||+|.+.++|++|+. +++..++|+.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 345566899999999999999999999999988 888888765 5678999999999999999999 9999999999
Q ss_pred EEEEEeecc
Q 033227 87 LIVLYYQQT 95 (124)
Q Consensus 87 l~v~~~~~~ 95 (124)
|+|.++.+.
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999998754
No 154
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=8.9e-18 Score=106.70 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
......++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|+|||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 34455789999999999999999999999999999988765 556899999999999999999999999999999999
Q ss_pred EEeec
Q 033227 90 LYYQQ 94 (124)
Q Consensus 90 ~~~~~ 94 (124)
.|+++
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99863
No 155
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=6.2e-18 Score=98.24 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=63.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCce--eCCeEEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFN--VANRYLIVLY 91 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~--i~g~~l~v~~ 91 (124)
++...++|||+|||+.+++++|+.+|++||.|.++.++.+ ++|||||+|.+.++|++ +++.. +.|+.+.|.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 3455799999999999999999999999999999999875 68999999999999883 46654 4599999999
Q ss_pred eecccc
Q 033227 92 YQQTKM 97 (124)
Q Consensus 92 ~~~~~~ 97 (124)
+.++..
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 987643
No 156
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=6e-18 Score=104.43 Aligned_cols=84 Identities=23% Similarity=0.267 Sum_probs=71.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccE-EEEEecCHHHHHHHHHHhCCceeCC--eEEE
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGT-AFVVYEDIYDAKTAVDHLSGFNVAN--RYLI 88 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~ 88 (124)
..++..-..|||+||+..+++++|+.+|++||.|.+|.+.... +|+ |||+|.+.++|..|++.|||..|.| +.|+
T Consensus 22 ~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp ---CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred cCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 3344344677899999999999999999999999999887543 577 9999999999999999999999998 9999
Q ss_pred EEEeecccc
Q 033227 89 VLYYQQTKM 97 (124)
Q Consensus 89 v~~~~~~~~ 97 (124)
|.|+++.+.
T Consensus 100 I~~ak~~~l 108 (130)
T 3zzy_A 100 IDFSKLTSL 108 (130)
T ss_dssp EEECSCSSC
T ss_pred EEecCCCce
Confidence 999997754
No 157
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-18 Score=103.56 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=70.7
Q ss_pred CCCCCCcEEEE--cCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCcee-----CCe
Q 033227 13 LPPEVNRVLYV--RNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNV-----ANR 85 (124)
Q Consensus 13 ~~~~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i-----~g~ 85 (124)
....+.++||| +||+..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|+..|||..+ .|+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 33445789999 779999999999999999999999988643 69999999999999999999999988 689
Q ss_pred EEEEEEeecc
Q 033227 86 YLIVLYYQQT 95 (124)
Q Consensus 86 ~l~v~~~~~~ 95 (124)
+|.|.|+...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999998754
No 158
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=3.4e-18 Score=99.04 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccc
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 96 (124)
..++|||+|||+.+++++|+.+|++| .|..+.+. .++|||||+|.+.++|++|+..|||..+.|+.|+|.+++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 36899999999999999999999999 89888874 567999999999999999999999999999999999987653
No 159
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.5e-19 Score=99.42 Aligned_cols=73 Identities=15% Similarity=0.358 Sum_probs=67.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|++|+..++ ..+.|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999988775 4558999999999999999999988 9999999999885
No 160
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.76 E-value=7.3e-18 Score=116.44 Aligned_cols=105 Identities=18% Similarity=0.305 Sum_probs=90.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCC-ceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYG-AIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..++|||+|||+.+++++|+.+|+.|| .|..+.++.+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 478999999999999999999999999 9999998875 3568999999999999999999999999999999999987
Q ss_pred ccccc---------------cccCcc-cCHHHHHHHHHHcCCCC
Q 033227 94 QTKMS---------------KKFDQK-KKDDELAKMQEKYGVST 121 (124)
Q Consensus 94 ~~~~~---------------~~~~~~-~~~~~l~~~~~~~g~~~ 121 (124)
+.... .+++.. .++++|.++|++||...
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~ 239 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIE 239 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCee
Confidence 65432 567888 99999999999998643
No 161
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=4.3e-18 Score=110.52 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..+++|||+|||+.+++++|+++|++||.|..|.++.+ +.++|||||+|.+.++|.+|+..|++..+.|+.|+|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 44689999999999999999999999999999999875 5568999999999999999999999999999999999998
Q ss_pred cccc
Q 033227 94 QTKM 97 (124)
Q Consensus 94 ~~~~ 97 (124)
....
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 6643
No 162
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=1.1e-17 Score=102.65 Aligned_cols=76 Identities=24% Similarity=0.392 Sum_probs=68.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccE-EEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEeecc
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGT-AFVVYEDIYDAKTAVDHLSGFNVAN--RYLIVLYYQQT 95 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~~~~~~ 95 (124)
..|||+||+..+++++|+.+|++||.|..|.+... .|+ |||+|.+.++|..|+..|||..|.| +.|+|.|+++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 34679999999999999999999999999988642 386 9999999999999999999999987 69999999877
Q ss_pred cc
Q 033227 96 KM 97 (124)
Q Consensus 96 ~~ 97 (124)
..
T Consensus 103 ~l 104 (124)
T 2e5i_A 103 RL 104 (124)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 163
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.76 E-value=9.8e-18 Score=109.55 Aligned_cols=100 Identities=22% Similarity=0.424 Sum_probs=85.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccC----C-------ceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKY----G-------AIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANR 85 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 85 (124)
..++|||+|||+.+++++|+++|++| | .|..+.+ +.++|||||+|.+.++|.+|+ .|+|..+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---ETTTTEEEEEESCSHHHHHHG-GGTTEEETTE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCc
Confidence 36899999999999999999999999 5 5555555 345799999999999999999 7999999999
Q ss_pred EEEEEEeecccc----------------------------ccccCcccCHHHHHHHHHHcCCC
Q 033227 86 YLIVLYYQQTKM----------------------------SKKFDQKKKDDELAKMQEKYGVS 120 (124)
Q Consensus 86 ~l~v~~~~~~~~----------------------------~~~~~~~~~~~~l~~~~~~~g~~ 120 (124)
.|+|.++.+... ..+++...++++|.++|++||..
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v 141 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPL 141 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCc
Confidence 999999875411 16788889999999999999864
No 164
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=98.10 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccc
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 96 (124)
..++|||+|||+.+++++|+.+|++||.|..| +.+..+..||||+|.+.++|.+|+. |++..+.|+.|.|.++.+..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 46899999999999999999999999999987 3332221299999999999999999 99999999999999887654
Q ss_pred c
Q 033227 97 M 97 (124)
Q Consensus 97 ~ 97 (124)
.
T Consensus 84 ~ 84 (94)
T 2e5g_A 84 F 84 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 165
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=2.8e-18 Score=104.14 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeE-----EEEE
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRY-----LIVL 90 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~-----l~v~ 90 (124)
...++|||+|||+.+++++|+++|++||.|..+.++.+ |||||+|.+.++|++|++.||+..+.|+. ++|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45789999999999999999999999999999999866 89999999999999999999999999988 7777
Q ss_pred Eeecc
Q 033227 91 YYQQT 95 (124)
Q Consensus 91 ~~~~~ 95 (124)
...+.
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 66654
No 166
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.8e-18 Score=97.40 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=65.0
Q ss_pred CcEEEEcCCCCCCCHHH----HHHHhccCC-ceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 18 NRVLYVRNLPFNISSEE----MYDIFGKYG-AIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
.+.|||+|||+.+++++ |+.+|++|| .|..| . .|+|||.|.+.++|.+|++.|+|..+.|++|+|.|+
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 34499999999999887 668999995 98887 1 289999999999999999999999999999999999
Q ss_pred ecccc
Q 033227 93 QQTKM 97 (124)
Q Consensus 93 ~~~~~ 97 (124)
+..+.
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 97754
No 167
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=4.4e-18 Score=114.51 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCC--ceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYG--AIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
..++|||+|||+.+++++|+.+|++|| .|..|.++.+ +.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 357899999999999999999999999 8999998875 45689999999999999999999999999999999999
Q ss_pred eeccc
Q 033227 92 YQQTK 96 (124)
Q Consensus 92 ~~~~~ 96 (124)
+.+..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87653
No 168
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=1.3e-17 Score=110.75 Aligned_cols=80 Identities=23% Similarity=0.478 Sum_probs=73.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC-CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS-KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 96 (124)
..+|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|++.|||..|+|+.|+|.++.++.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 478999999999999999999999999999998875 3358999999999999999999999999999999999998764
Q ss_pred c
Q 033227 97 M 97 (124)
Q Consensus 97 ~ 97 (124)
.
T Consensus 183 ~ 183 (213)
T 4f02_A 183 E 183 (213)
T ss_dssp H
T ss_pred c
Confidence 3
No 169
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=4.1e-18 Score=101.10 Aligned_cols=80 Identities=18% Similarity=0.357 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
...++|||+|||+.+++++|+.+|+.||.|..+.++.+ +.++|||||+|.+.++|++|+. ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34689999999999999999999999999999998875 4458999999999999999999 9999999999999988
Q ss_pred cccc
Q 033227 94 QTKM 97 (124)
Q Consensus 94 ~~~~ 97 (124)
+...
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6644
No 170
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.8e-18 Score=97.14 Aligned_cols=72 Identities=18% Similarity=0.349 Sum_probs=66.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 20 VLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 20 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
+|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999999999999999999999999988875 45689999999999999999994 899999999999874
No 171
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.1e-17 Score=97.41 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCC-----------HHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCcee
Q 033227 14 PPEVNRVLYVRNLPFNIS-----------SEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNV 82 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i 82 (124)
.+..+++|+|.||..... +++|+.+|++||.|..+.+ .+..++|||||+|.+.++|.+|+..|||..+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 344589999999944332 5789999999999999965 5666899999999999999999999999999
Q ss_pred CCeEEEEEEeecccccc
Q 033227 83 ANRYLIVLYYQQTKMSK 99 (124)
Q Consensus 83 ~g~~l~v~~~~~~~~~~ 99 (124)
.|+.|+|.++.+.....
T Consensus 90 ~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 90 GGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp TTEECEEEECCSCCCSS
T ss_pred CCcEEEEEEeCCCCCcc
Confidence 99999999998875543
No 172
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=1.7e-17 Score=101.53 Aligned_cols=79 Identities=28% Similarity=0.434 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
++..+++|||+|+ .+++++|+.+|++||.|..+.+. .++|||||+|.+.++|.+|+..|+|..+.|+.|+|.|+.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 3455799999995 69999999999999999999885 457999999999999999999999999999999999998
Q ss_pred cccc
Q 033227 94 QTKM 97 (124)
Q Consensus 94 ~~~~ 97 (124)
+...
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7754
No 173
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.73 E-value=2.9e-17 Score=105.54 Aligned_cols=79 Identities=23% Similarity=0.464 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
....++|||+|||..+++++|+.+|++||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.|+.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 3456899999999999999999999999998877 45677789999999999999999999999999999999999987
Q ss_pred c
Q 033227 95 T 95 (124)
Q Consensus 95 ~ 95 (124)
+
T Consensus 174 k 174 (175)
T 1fje_B 174 K 174 (175)
T ss_dssp C
T ss_pred C
Confidence 5
No 174
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.73 E-value=3.2e-17 Score=104.95 Aligned_cols=79 Identities=20% Similarity=0.432 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
++...++|||+|||..+++++|+.+|++||.|..+.+..+ +.++|+|||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 90 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3444789999999999999999999999999999988765 4458999999999999999999999999999999999
Q ss_pred Ee
Q 033227 91 YY 92 (124)
Q Consensus 91 ~~ 92 (124)
|+
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.73 E-value=2.4e-17 Score=94.91 Aligned_cols=71 Identities=27% Similarity=0.518 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccC----C-------ceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKY----G-------AIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANR 85 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 85 (124)
..++|||+|||+.+++++|+.+|++| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 46899999999999999999999999 8 8999988755 699999999999999999 8999999999
Q ss_pred EEEEEE
Q 033227 86 YLIVLY 91 (124)
Q Consensus 86 ~l~v~~ 91 (124)
.|+|..
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999864
No 176
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=9.5e-18 Score=103.27 Aligned_cols=81 Identities=23% Similarity=0.351 Sum_probs=70.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhccCCcee--EEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 13 LPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIR--QIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 13 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~--~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
.++...++|||+|||+.+++++|+++|++| .|. .|.++.+ +.++|||||+|.+.++|++|+.. ++..+.|+.|.
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 344557899999999999999999999999 565 7888764 56689999999999999999994 78999999999
Q ss_pred EEEeecc
Q 033227 89 VLYYQQT 95 (124)
Q Consensus 89 v~~~~~~ 95 (124)
|..+.+.
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887654
No 177
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.1e-19 Score=109.10 Aligned_cols=83 Identities=24% Similarity=0.361 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeE--------EEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCC
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQ--------IRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVAN 84 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g 84 (124)
...++|||+|||..+++++|+.+|++||.|.. +.++.+ +.++|||||+|.+.++|.+|+..|++..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34689999999999999999999999999988 777765 4568999999999999999999999999999
Q ss_pred eEEEEEEeeccccc
Q 033227 85 RYLIVLYYQQTKMS 98 (124)
Q Consensus 85 ~~l~v~~~~~~~~~ 98 (124)
+.|+|.++.+....
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999877554
No 178
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.73 E-value=3.8e-17 Score=118.91 Aligned_cols=82 Identities=24% Similarity=0.437 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
...++|||+|||+.+++.+|..+|++||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34589999999999999999999999999999998865 556899999999999999999999999999999999999
Q ss_pred ecccc
Q 033227 93 QQTKM 97 (124)
Q Consensus 93 ~~~~~ 97 (124)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86543
No 179
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=2.8e-18 Score=107.31 Aligned_cols=82 Identities=18% Similarity=0.336 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 14 PPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 14 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
.+...++|||+|||+.+++++|+++|++|| +..|.++.+ +.++|||||+|.+.++|++|+ .+++..+.|+.|+|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445578999999999999999999999999 668888865 566899999999999999999 6899999999999998
Q ss_pred eecccc
Q 033227 92 YQQTKM 97 (124)
Q Consensus 92 ~~~~~~ 97 (124)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876643
No 180
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=95.82 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccc
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTK 96 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 96 (124)
.+++|||+|||..+++++|+.+|++||.|..+.++.+ ++|||||+|.+.++|+++.. ..+.+.|+.|.|.++.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCC
Confidence 4689999999999999999999999999999998865 57999999999999976432 1345689999999998876
Q ss_pred cc
Q 033227 97 MS 98 (124)
Q Consensus 97 ~~ 98 (124)
..
T Consensus 80 ~~ 81 (88)
T 1wf0_A 80 NS 81 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 181
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=1.1e-16 Score=104.48 Aligned_cols=82 Identities=18% Similarity=0.400 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 92 (124)
...++|||+|||..+++++|+.+|++||.|..+.+..+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45699999999999999999999999999999988865 445899999999999999999999999999999999999
Q ss_pred ecccc
Q 033227 93 QQTKM 97 (124)
Q Consensus 93 ~~~~~ 97 (124)
.+...
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 182
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=7.6e-17 Score=106.58 Aligned_cols=81 Identities=21% Similarity=0.430 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..++|||+|||..+++++|+.+|++||.|..+.+..+ +.++|||||+|.+.++|.+|+..|||..++|+.|+|.|+.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 4589999999999999999999999999999998875 4558999999999999999999999999999999999998
Q ss_pred cccc
Q 033227 94 QTKM 97 (124)
Q Consensus 94 ~~~~ 97 (124)
+...
T Consensus 204 ~~~~ 207 (216)
T 2qfj_A 204 TPPM 207 (216)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7643
No 183
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.6e-17 Score=100.12 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=69.5
Q ss_pred CcEEEEcCC----CCCCCHHHHHHHhccCCceeEEEeccCCCC---ccEEEEEecC----HHH----HHHHHH--HhCCc
Q 033227 18 NRVLYVRNL----PFNISSEEMYDIFGKYGAIRQIRIGSSKDT---RGTAFVVYED----IYD----AKTAVD--HLSGF 80 (124)
Q Consensus 18 ~~~l~v~~l----~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~g~~fv~f~~----~~~----a~~a~~--~l~~~ 80 (124)
++.|||+|| |+.+++.+|+++|++||.|.++.++.|+.+ +|||||.|.+ ..+ |.+|+. .++|.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 999999999999999999999999987544 9999999996 333 788888 78999
Q ss_pred eeCCeEEEEEEeecccc
Q 033227 81 NVANRYLIVLYYQQTKM 97 (124)
Q Consensus 81 ~i~g~~l~v~~~~~~~~ 97 (124)
.|+|+.|+|.+.+....
T Consensus 82 ~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSIL 98 (136)
T ss_dssp EETTEEEEEEECCTTHH
T ss_pred eecCcEEEEEECcccHH
Confidence 99999999999877655
No 184
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.3e-17 Score=97.39 Aligned_cols=75 Identities=16% Similarity=0.355 Sum_probs=63.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC------CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS------KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
...++|||+|||+.+++++|+++|++||.|. +.++.+ +.++|||||+|.+.++|++|++.|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3468999999999999999999999999999 777764 4668999999999999999999884 366666666
Q ss_pred EEee
Q 033227 90 LYYQ 93 (124)
Q Consensus 90 ~~~~ 93 (124)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5444
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=2.2e-16 Score=94.33 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHhccCCceeEEEeccC----CCCccEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 033227 16 EVNRVLYVRNLPF-----NISSEEMYDIFGKYGAIRQIRIGSS----KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRY 86 (124)
Q Consensus 16 ~~~~~l~v~~l~~-----~~~~~~l~~~f~~~g~i~~~~~~~~----~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 86 (124)
.++++|+|.|+.. .-++++|+..|++||.|.++.++.+ +.++|++||+|.+.++|.+|+..|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3478999999952 2367899999999999999998875 356899999999999999999999999999999
Q ss_pred EEEEEeecc
Q 033227 87 LIVLYYQQT 95 (124)
Q Consensus 87 l~v~~~~~~ 95 (124)
|+|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998764
No 186
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=3.8e-17 Score=104.10 Aligned_cols=77 Identities=14% Similarity=0.295 Sum_probs=71.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQ 94 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 94 (124)
.++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+. +++..+.|+.|+|.|+.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 579999999999999999999999999999998875 5568999999999999999998 899999999999999987
Q ss_pred c
Q 033227 95 T 95 (124)
Q Consensus 95 ~ 95 (124)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 187
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=2e-16 Score=103.08 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
..++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+.. ++..++|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 4589999999999999999999999999999988875 45689999999999999999986 8999999999999998
Q ss_pred ccccc
Q 033227 94 QTKMS 98 (124)
Q Consensus 94 ~~~~~ 98 (124)
++...
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 87653
No 188
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=2.4e-16 Score=100.38 Aligned_cols=78 Identities=35% Similarity=0.473 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCC--eEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVAN--RYLIV 89 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v 89 (124)
....++|||+|||..+++++|+.+|++||.|..+.++.+ +.++|+|||+|.+.++|.+|+..|+|..+.| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 345789999999999999999999999999999988774 4457999999999999999999999999987 99999
Q ss_pred EEe
Q 033227 90 LYY 92 (124)
Q Consensus 90 ~~~ 92 (124)
.|+
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 885
No 189
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6.2e-17 Score=99.27 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccCCce----eEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKYGAI----RQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i----~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
....++|||+|||+.+++++|+++|++||.| ..|.++.+ +.++|||||+|.+.++|++|+.. ++..+.|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3457899999999999999999999999975 56777654 56689999999999999999996 99999999999
Q ss_pred EEEeecc
Q 033227 89 VLYYQQT 95 (124)
Q Consensus 89 v~~~~~~ 95 (124)
|..+.+.
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887544
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.69 E-value=5.6e-17 Score=109.48 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCcee---
Q 033227 15 PEVNRVLYVRNLPFNI---------SSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNV--- 82 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i--- 82 (124)
...+++|||+||+..+ ++++|+.+|++||.|..|.++.+ +|||||+|.+.++|+.|+..|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---KNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---CCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 4557999999999998 79999999999999999998854 69999999999999999999999999
Q ss_pred ---------CCeEEEEEEeeccc
Q 033227 83 ---------ANRYLIVLYYQQTK 96 (124)
Q Consensus 83 ---------~g~~l~v~~~~~~~ 96 (124)
.|+.|.|.|+....
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 191
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=1.3e-16 Score=102.15 Aligned_cols=77 Identities=21% Similarity=0.360 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeC---CeEEEEEE
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVA---NRYLIVLY 91 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~---g~~l~v~~ 91 (124)
..++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..+. +++|+|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 4689999999999999999999999999999988775 455899999999999999999999998776 39999999
Q ss_pred ee
Q 033227 92 YQ 93 (124)
Q Consensus 92 ~~ 93 (124)
+.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 192
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=3.8e-16 Score=107.35 Aligned_cols=75 Identities=23% Similarity=0.485 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEee
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVA-NRYLIVLYYQ 93 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-g~~l~v~~~~ 93 (124)
.+++|||+|||..+++++|+++|++||.|..+.++.+. +|||||+|.+.++|.+|+..|||..+. |+.|+|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 46899999999999999999999999999999988554 589999999999999999999999999 9999999986
No 193
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=3e-16 Score=103.03 Aligned_cols=78 Identities=23% Similarity=0.472 Sum_probs=69.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeecc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQT 95 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 95 (124)
.++|||+|||+.+++++|+.+|++||.|..+.++++ +.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.+....
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 489999999999999999999999999999988864 556899999999999999999865 46999999999997765
Q ss_pred c
Q 033227 96 K 96 (124)
Q Consensus 96 ~ 96 (124)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 194
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=4.5e-16 Score=98.87 Aligned_cols=77 Identities=26% Similarity=0.449 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC---CCCccEEEEEecCHHHHHHHHHHhCCceeCCe--EEEEE
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS---KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANR--YLIVL 90 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~--~l~v~ 90 (124)
...++|||+|||..+++++|+.+|++||.|..+.+..+ +.++|+|||+|.+.++|.+|+..|||..+.|+ +|+|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 44689999999999999999999999999999988764 44589999999999999999999999999995 48888
Q ss_pred Ee
Q 033227 91 YY 92 (124)
Q Consensus 91 ~~ 92 (124)
|+
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=8.8e-16 Score=100.51 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCC-ceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEee
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYG-AIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVA-NRYLIVLYYQ 93 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-g~~l~v~~~~ 93 (124)
+++++|||+|||..+++++|+.+|++|| .|..+.++.+. +|+|||+|.+.++|.+|+..|+|..+. |+.|+|.|++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3478999999999999999999999999 99999987543 689999999999999999999999999 9999999987
Q ss_pred cc
Q 033227 94 QT 95 (124)
Q Consensus 94 ~~ 95 (124)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=1.4e-15 Score=102.00 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCC-ceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEeec
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYG-AIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVA-NRYLIVLYYQQ 94 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-g~~l~v~~~~~ 94 (124)
.+++|||+|||..+++++|+.+|++|| .|..+.++.+ ++|+|||+|.+.++|.+|+..|+|..+. |+.|+|.|+++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 368999999999999999999999999 9999998653 3689999999999999999999999999 99999999876
Q ss_pred c
Q 033227 95 T 95 (124)
Q Consensus 95 ~ 95 (124)
.
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=3.9e-15 Score=88.88 Aligned_cols=79 Identities=28% Similarity=0.495 Sum_probs=68.1
Q ss_pred CCcEEEEcCC--CCCCC--------HHHHHHHhccCCceeEEEeccCC-----CCccEEEEEecCHHHHHHHHHHhCCce
Q 033227 17 VNRVLYVRNL--PFNIS--------SEEMYDIFGKYGAIRQIRIGSSK-----DTRGTAFVVYEDIYDAKTAVDHLSGFN 81 (124)
Q Consensus 17 ~~~~l~v~~l--~~~~~--------~~~l~~~f~~~g~i~~~~~~~~~-----~~~g~~fv~f~~~~~a~~a~~~l~~~~ 81 (124)
+++.|.+.|+ |.... +++|+..|++||.|.++.++++. .++|++||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3688999998 33333 36899999999999999998753 458999999999999999999999999
Q ss_pred eCCeEEEEEEeecc
Q 033227 82 VANRYLIVLYYQQT 95 (124)
Q Consensus 82 i~g~~l~v~~~~~~ 95 (124)
+.|+.|+|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998765
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=2.1e-15 Score=99.81 Aligned_cols=76 Identities=17% Similarity=0.343 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCce--eEEEeccCC-CCccEEEEEecCHHHHHHHHHHhCCceeCCe----EEEE
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAI--RQIRIGSSK-DTRGTAFVVYEDIYDAKTAVDHLSGFNVANR----YLIV 89 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i--~~~~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~----~l~v 89 (124)
++++|||+|||+.+++++|+++|++||.| ..+.++.+. .++|+|||+|.+.++|.+|+..|||..+.|+ ++.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 36799999999999999999999999998 888887653 4469999999999999999999999999875 5666
Q ss_pred EEe
Q 033227 90 LYY 92 (124)
Q Consensus 90 ~~~ 92 (124)
.++
T Consensus 202 k~~ 204 (205)
T 3tyt_A 202 KLC 204 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 553
No 199
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.57 E-value=2.1e-14 Score=101.50 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCcEEEEcC--CCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeC--
Q 033227 8 KGNARLPPEVNRVLYVRN--LPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVA-- 83 (124)
Q Consensus 8 ~~~~~~~~~~~~~l~v~~--l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-- 83 (124)
......+..++.+|||+| |+..+++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|++.|||..+.
T Consensus 8 ~~~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 8 HEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp TTTCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred cCCceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 344555666689999999 578999999999999999999988764 4799999999999999999999998873
Q ss_pred -Ce--EEEEEEee
Q 033227 84 -NR--YLIVLYYQ 93 (124)
Q Consensus 84 -g~--~l~v~~~~ 93 (124)
|+ .+.+.|..
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 44 67888875
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.57 E-value=1.8e-14 Score=87.64 Aligned_cols=79 Identities=25% Similarity=0.365 Sum_probs=67.7
Q ss_pred CCcEEEEcCCC--CCC---CHHHHHHHhccCCceeEEEeccCC-------CCccEEEEEecCHHHHHHHHHHhCCceeCC
Q 033227 17 VNRVLYVRNLP--FNI---SSEEMYDIFGKYGAIRQIRIGSSK-------DTRGTAFVVYEDIYDAKTAVDHLSGFNVAN 84 (124)
Q Consensus 17 ~~~~l~v~~l~--~~~---~~~~l~~~f~~~g~i~~~~~~~~~-------~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g 84 (124)
++++|++.|+- ..+ .+++|++.|++||.|.++.++.+. .++|++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 37899999983 222 357899999999999999988753 246999999999999999999999999999
Q ss_pred eEEEEEEeecc
Q 033227 85 RYLIVLYYQQT 95 (124)
Q Consensus 85 ~~l~v~~~~~~ 95 (124)
+.|+|.|+...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998754
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=2.4e-14 Score=97.70 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhC-CceeC---CeEEEEE
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLS-GFNVA---NRYLIVL 90 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~-~~~i~---g~~l~v~ 90 (124)
.+++|||+|||..+++++|+.+|+.||.|..+.++.+ +.++|||||+|.+.++|.+|+..|+ +..+. +++|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 3679999999999999999999999999999988875 4458999999999999999999995 44444 8999999
Q ss_pred Eeecccc
Q 033227 91 YYQQTKM 97 (124)
Q Consensus 91 ~~~~~~~ 97 (124)
++.+...
T Consensus 175 ~~~~~~~ 181 (261)
T 3sde_A 175 PMEQFDD 181 (261)
T ss_dssp ECCCEES
T ss_pred eccccCc
Confidence 9987653
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=2.4e-15 Score=89.69 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=58.6
Q ss_pred cCCCCCCCHHHHHHHh------------ccCCceeEEEeccC--CCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 24 RNLPFNISSEEMYDIF------------GKYGAIRQIRIGSS--KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 24 ~~l~~~~~~~~l~~~f------------~~~g~i~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
.|||..+++.+|++.| ++||.|.++.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 4455555666555555 99999999999875 456899999999999999999999999999999999
Q ss_pred EEee
Q 033227 90 LYYQ 93 (124)
Q Consensus 90 ~~~~ 93 (124)
.|++
T Consensus 101 ~~sp 104 (104)
T 1jmt_A 101 ELSP 104 (104)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9863
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9e-14 Score=82.22 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=63.7
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 033227 18 NRVLYVRNLP-------FNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVL 90 (124)
Q Consensus 18 ~~~l~v~~l~-------~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 90 (124)
.++|.|.-.. ..+++++|+.+|++||.|..|.++ +.++|||||+|.+.++|+.|+..+++ +.|++|+|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~ 85 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKIS 85 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEE
Confidence 4566666443 468999999999999999999887 46789999999999999999997554 679999999
Q ss_pred Eeecccc
Q 033227 91 YYQQTKM 97 (124)
Q Consensus 91 ~~~~~~~ 97 (124)
|+++...
T Consensus 86 ~a~~~~~ 92 (100)
T 2d9o_A 86 WLEGQPQ 92 (100)
T ss_dssp CSSCCCC
T ss_pred EccCCCC
Confidence 9987654
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.53 E-value=1.8e-13 Score=82.78 Aligned_cols=79 Identities=18% Similarity=0.256 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCC--CCC--------CHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 033227 16 EVNRVLYVRNLP--FNI--------SSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANR 85 (124)
Q Consensus 16 ~~~~~l~v~~l~--~~~--------~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 85 (124)
.+++.|.+.|+- ... .+++|++.|++||.|..+.+.++. ++|++||.|.+.++|.+|+..|||..++|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 347889999982 221 124789999999999999987653 589999999999999999999999999999
Q ss_pred EEEEEEeecc
Q 033227 86 YLIVLYYQQT 95 (124)
Q Consensus 86 ~l~v~~~~~~ 95 (124)
.|+|.|+...
T Consensus 84 ~i~v~~~~~~ 93 (114)
T 3s6e_A 84 MITAAYVPLP 93 (114)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEEcHH
Confidence 9999998754
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.8e-11 Score=74.35 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=68.1
Q ss_pred CCCCCCCcEEEEcCCCCC-CCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecC-HHHHHHHHHHhC--CceeCCeEE
Q 033227 12 RLPPEVNRVLYVRNLPFN-ISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYED-IYDAKTAVDHLS--GFNVANRYL 87 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~~~l~--~~~i~g~~l 87 (124)
+...+.+..|+|+||+.. ++.++|+++|++||.|.+|.++.+.. .|||.|.+ ..+|..|+..|+ +..|.|..+
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 445566999999999999 99999999999999999999987653 69999999 899999999995 678888777
Q ss_pred EEEEee
Q 033227 88 IVLYYQ 93 (124)
Q Consensus 88 ~v~~~~ 93 (124)
.+....
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 776544
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=2.1e-11 Score=70.15 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=60.3
Q ss_pred CcEEEEcCCCC----CCCH----HHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 18 NRVLYVRNLPF----NISS----EEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 18 ~~~l~v~~l~~----~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
+.+|+|.-.+. .+-. .+|...|++||.|..++++.+. +||+|.+.++|.+|+. |||..+.|+.|+|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 45666766552 2323 5688999999999999998664 8999999999999999 9999999999999
Q ss_pred EEeeccc
Q 033227 90 LYYQQTK 96 (124)
Q Consensus 90 ~~~~~~~ 96 (124)
..+.+..
T Consensus 81 ~lkt~dW 87 (91)
T 2dnr_A 81 ALKSPSG 87 (91)
T ss_dssp EECCCSS
T ss_pred EeCCCCc
Confidence 9988764
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2.9e-10 Score=65.73 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=58.3
Q ss_pred CcEEEEcCCCCC-----C-CH---HHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 033227 18 NRVLYVRNLPFN-----I-SS---EEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLI 88 (124)
Q Consensus 18 ~~~l~v~~l~~~-----~-~~---~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 88 (124)
..+|+|.-+++. + .+ .+|...|.+||.+..++++.+. +||+|.+.++|.+|+. |+|..+.|+.|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 567778777632 2 22 4688899999999999998664 9999999999999999 999999999999
Q ss_pred EEEee
Q 033227 89 VLYYQ 93 (124)
Q Consensus 89 v~~~~ 93 (124)
|.+..
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.98 E-value=1.5e-09 Score=72.16 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=63.3
Q ss_pred CcEEEEcCCC-----CCCCHHHHHHHhccCCceeEEEeccC-------CCCccEEEEEecCHHHHHHHHHHhCCceeCCe
Q 033227 18 NRVLYVRNLP-----FNISSEEMYDIFGKYGAIRQIRIGSS-------KDTRGTAFVVYEDIYDAKTAVDHLSGFNVANR 85 (124)
Q Consensus 18 ~~~l~v~~l~-----~~~~~~~l~~~f~~~g~i~~~~~~~~-------~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 85 (124)
...+.+.|+- ..-.+++|...|++||.|..+.+..+ +.++|++||+|.+.++|.+|+..|||..+.|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3455555541 22345789999999999999988742 25689999999999999999999999999999
Q ss_pred EEEEEEeecc
Q 033227 86 YLIVLYYQQT 95 (124)
Q Consensus 86 ~l~v~~~~~~ 95 (124)
.|.+.++...
T Consensus 204 ~i~~~~~~~~ 213 (222)
T 3dxb_A 204 KVVAEVYDQE 213 (222)
T ss_dssp BCEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999998754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=1.5e-08 Score=59.90 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=68.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhccC-----CceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 033227 15 PEVNRVLYVRNLPFNISSEEMYDIFGKY-----GAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIV 89 (124)
Q Consensus 15 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 89 (124)
.+..++|-+-|||..+++..++.+.+++ |.+..+.++.|- +-|+|+|.+...|-+|.-.|+|..+.|+.|+|
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH---~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF---NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT---TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC---CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 3447899999999999999999999999 999999998774 68999999999999999999999999999998
Q ss_pred EEee
Q 033227 90 LYYQ 93 (124)
Q Consensus 90 ~~~~ 93 (124)
.-..
T Consensus 95 gTv~ 98 (117)
T 2l9w_A 95 GTIN 98 (117)
T ss_dssp ECHH
T ss_pred cCHH
Confidence 6544
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.41 E-value=3.6e-06 Score=48.73 Aligned_cols=61 Identities=26% Similarity=0.462 Sum_probs=51.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhC
Q 033227 12 RLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLS 78 (124)
Q Consensus 12 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 78 (124)
.+.+...+.+++ ++|+.+...+|..+|++||.+. |+|+-| -.|||.|.+++.|..|+..+.
T Consensus 10 d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 10 DLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET----TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 445556788888 9999999999999999999544 777755 379999999999999998763
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.35 E-value=2.3e-06 Score=50.18 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=63.1
Q ss_pred CCcEEEEcCCCCCC-C---H-HHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 17 VNRVLYVRNLPFNI-S---S-EEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 17 ~~~~l~v~~l~~~~-~---~-~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
..++|+|.||+..+ . . ..++.+|..|+.+....+...- .-..|.|.+.++|.+|-..|++..+.|+.++|.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF---RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF---KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT---TEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc---eEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 35789999998754 2 1 4678999999998776665432 3678999999999999999999999999999999
Q ss_pred eeccc
Q 033227 92 YQQTK 96 (124)
Q Consensus 92 ~~~~~ 96 (124)
+.+..
T Consensus 81 gq~~~ 85 (104)
T 1wey_A 81 AQTLH 85 (104)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 98553
No 212
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.28 E-value=8.6e-07 Score=55.67 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=48.9
Q ss_pred EEeccC-CCCccEEEEEecCHHHHHHHHHHhCCce-eCCeE------EEEEEeecc-------------cc-ccccCccc
Q 033227 48 IRIGSS-KDTRGTAFVVYEDIYDAKTAVDHLSGFN-VANRY------LIVLYYQQT-------------KM-SKKFDQKK 105 (124)
Q Consensus 48 ~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~-i~g~~------l~v~~~~~~-------------~~-~~~~~~~~ 105 (124)
+.+..+ ..++|||||+|.+.++|++|+..+++.. +.|.. ......... .. ..+++..+
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTC
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 344444 3468999999999999999998877522 12211 111111100 00 17899999
Q ss_pred CHHHHHHHHHHcCCCC
Q 033227 106 KDDELAKMQEKYGVST 121 (124)
Q Consensus 106 ~~~~l~~~~~~~g~~~ 121 (124)
++++|.++|++||...
T Consensus 83 ~~~~l~~~F~~~G~v~ 98 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVG 98 (158)
T ss_dssp CHHHHHHHHHHHSCEE
T ss_pred CHHHHHHHHHhcCCeE
Confidence 9999999999998653
No 213
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.27 E-value=4.3e-07 Score=56.72 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=56.0
Q ss_pred CccEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEEEeecccc------------------------ccccCcccCHHHH
Q 033227 56 TRGTAFVVYEDIYDAKTAVDHL-SGFNVANRYLIVLYYQQTKM------------------------SKKFDQKKKDDEL 110 (124)
Q Consensus 56 ~~g~~fv~f~~~~~a~~a~~~l-~~~~i~g~~l~v~~~~~~~~------------------------~~~~~~~~~~~~l 110 (124)
-+|+++++|.+.++|++|+..+ ||..++| .+.+.++..... ..+++..+++++|
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 3799999999999999999999 9999999 999988765210 1788999999999
Q ss_pred HHHHHHcCCCC
Q 033227 111 AKMQEKYGVST 121 (124)
Q Consensus 111 ~~~~~~~g~~~ 121 (124)
.++|++||...
T Consensus 91 ~~~F~~~G~i~ 101 (150)
T 2i2y_A 91 ERAFGYYGPLR 101 (150)
T ss_dssp HHHHHHHSCEE
T ss_pred HHHHHhhCCEE
Confidence 99999998654
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.24 E-value=2.7e-05 Score=44.75 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=60.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCC-----CCccEEEEEecCHHHHHHHHHHhCCceeCC-----eEEE
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSK-----DTRGTAFVVYEDIYDAKTAVDHLSGFNVAN-----RYLI 88 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g-----~~l~ 88 (124)
++|.|++||+..+++++.+.+...+.+.....+..+ ..-+-|+|.|.+.+++....+.++|+.+.. .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 578999999999999999999998877766665432 224789999999999999999999987652 3445
Q ss_pred EEEeecc
Q 033227 89 VLYYQQT 95 (124)
Q Consensus 89 v~~~~~~ 95 (124)
|+++...
T Consensus 82 VE~AP~q 88 (91)
T 1uw4_A 82 VEFAPFQ 88 (91)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 6665543
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=9.1e-05 Score=43.30 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=59.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhcc-----CCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q 033227 17 VNRVLYVRNLPFNISSEEMYDIFGK-----YGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLY 91 (124)
Q Consensus 17 ~~~~l~v~~l~~~~~~~~l~~~f~~-----~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 91 (124)
.+.+|.|.|||+.+.++.|.-+|+. -|.|..+... + +-|+|+|.+...|++.++. ..+.+++..|.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~--~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL--G---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE--T---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc--C---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEc
Confidence 3689999999999999999999975 2557777654 2 5799999999999999883 36889999999877
Q ss_pred eeccc
Q 033227 92 YQQTK 96 (124)
Q Consensus 92 ~~~~~ 96 (124)
+.+..
T Consensus 81 ~~~~~ 85 (104)
T 2dhx_A 81 APPRA 85 (104)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65543
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.87 E-value=2.5e-05 Score=45.34 Aligned_cols=55 Identities=27% Similarity=0.429 Sum_probs=47.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhC
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLS 78 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 78 (124)
.+.+++ ++|+.+...+|..+|++||. ..|+|+-| -.|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET----TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 467777 99999999999999999994 44788765 379999999999999999764
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.72 E-value=0.00018 Score=41.70 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=56.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCC-----ccEEEEEecCHHHHHHHHHHhCCceeCC-----eEE
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDT-----RGTAFVVYEDIYDAKTAVDHLSGFNVAN-----RYL 87 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~i~g-----~~l 87 (124)
+-+|.|+.||+..|++++.+.+...-.+.....+..+.+ -+.|+|.|.+.++.....+.++|..+.. -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 468999999999999998888877665544333322111 3678999999999999999999987652 345
Q ss_pred EEEEee
Q 033227 88 IVLYYQ 93 (124)
Q Consensus 88 ~v~~~~ 93 (124)
.|+++.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566654
No 218
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.64 E-value=0.00051 Score=41.26 Aligned_cols=75 Identities=16% Similarity=0.144 Sum_probs=59.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCC-eEEEEEEeec
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVAN-RYLIVLYYQQ 94 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g-~~l~v~~~~~ 94 (124)
...+-|.|-+.|+.. -..+...|++||.|.+.... ....+-.|.|.+..+|++|+. .||..+.| -.|-|.....
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCC
Confidence 345889999999886 46678889999999987762 234699999999999999999 59999985 5666666543
Q ss_pred c
Q 033227 95 T 95 (124)
Q Consensus 95 ~ 95 (124)
.
T Consensus 97 ~ 97 (119)
T 1wwh_A 97 K 97 (119)
T ss_dssp H
T ss_pred H
Confidence 3
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.86 E-value=0.0017 Score=39.53 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=55.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEE-Eecc------------C--C--CCccEEEEEecCHHHHHHHHHHhCCc
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQI-RIGS------------S--K--DTRGTAFVVYEDIYDAKTAVDHLSGF 80 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~------------~--~--~~~g~~fv~f~~~~~a~~a~~~l~~~ 80 (124)
..-|.|-+.|+... ..+...|++||.|.+- .... . . ....+-.|.|.+..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45677888987765 5567789999998762 1111 0 0 124678999999999999999 5999
Q ss_pred eeCCeEEEEEEeecc
Q 033227 81 NVANRYLIVLYYQQT 95 (124)
Q Consensus 81 ~i~g~~l~v~~~~~~ 95 (124)
.+.|.-|-|.++.+.
T Consensus 85 ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKD 99 (132)
T ss_dssp EETTEECEEEECCHH
T ss_pred EeCcEEEEEEECCHH
Confidence 999988888776543
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.81 E-value=0.00082 Score=49.27 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=41.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHH
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVD 75 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 75 (124)
+.|+|. .|...++.+|.++|++||+|..+.+..+. .-|+.|+|++.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 789997 79999999999999999999998776543 3699999999998887654
No 221
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=95.75 E-value=0.0018 Score=39.53 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=23.5
Q ss_pred cEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEeeccccc--------cccCcccCHHHHHHHHHHcCCCC
Q 033227 58 GTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQTKMS--------KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 58 g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
-+.|.+|.+...+..|+..++|....|+. ...+..+.... .+++..+++++|.++|++||...
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp -------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 46788899999999999999887665543 22233332221 78999999999999999998654
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.74 E-value=0.069 Score=39.65 Aligned_cols=57 Identities=26% Similarity=0.433 Sum_probs=46.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhC
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLS 78 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 78 (124)
.....++++ +|..+...+|..+|+.||.+ +|+++.+ ..|||.|.+.+.|..++..++
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS----SEEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC----CeEEEEECCHHHHHHHHHHHH
Confidence 345677776 88999999999999999954 5777644 379999999999999999885
No 223
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=93.92 E-value=0.003 Score=45.95 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.|++..+++++|.++|++||....
T Consensus 108 ~nL~~~~te~~L~~~F~~~G~I~~ 131 (437)
T 3pgw_S 108 ARVNYDTTESKLRREFEVYGPIKR 131 (437)
T ss_pred eCCCCCCCHHHHHHHHHHcCCeeE
Confidence 789999999999999999997643
No 224
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=90.63 E-value=0.26 Score=27.47 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=18.9
Q ss_pred cccCcccCHHHHHHHHHHcC
Q 033227 99 KKFDQKKKDDELAKMQEKYG 118 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g 118 (124)
++++...++++|.++|++||
T Consensus 7 ~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 67899999999999999999
No 225
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.34 E-value=0.15 Score=29.75 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.3
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
++++.++++++|+++|++||...+
T Consensus 22 ~nLp~~vte~dL~~lF~~fG~V~~ 45 (105)
T 1sjq_A 22 RKLPIDVTEGEVISLGLPFGKVTN 45 (105)
T ss_dssp CSCCTTSCHHHHHHHHHHHCCEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEE
Confidence 789999999999999999997543
No 226
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=87.34 E-value=0.47 Score=24.96 Aligned_cols=23 Identities=4% Similarity=0.206 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++...++++|.++|+++|...
T Consensus 5 ~nLp~~~t~~~l~~~F~~~G~i~ 27 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGFGEVE 27 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHHSCCS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeE
Confidence 57889999999999999998754
No 227
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=86.52 E-value=0.54 Score=27.44 Aligned_cols=34 Identities=6% Similarity=-0.106 Sum_probs=20.3
Q ss_pred eEEEEEEeecccc-----ccccCcccCHHHHHHHHHHcC
Q 033227 85 RYLIVLYYQQTKM-----SKKFDQKKKDDELAKMQEKYG 118 (124)
Q Consensus 85 ~~l~v~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g 118 (124)
..+.+.|.++... ..|++..+++++|.++|+++|
T Consensus 15 ~~~~~~~~~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G 53 (111)
T 2jvr_A 15 VPRGSHMSKLPAKRYRITMKNLPEGCSWQDLKDLARENS 53 (111)
T ss_dssp ----------CCCCEEEEEECSSCCCCHHHHHHHHHHHT
T ss_pred eecchhcCCCCCCCCEEEEECCCCCCCHHHHHHHHHHhC
Confidence 3455555543322 178999999999999999999
No 228
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=86.35 E-value=0.49 Score=24.91 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=20.6
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++...++++|.++|+++|....
T Consensus 5 ~nlp~~~t~~~l~~~F~~~G~i~~ 28 (75)
T 2mss_A 5 GGLSVNTTVEDVKHYFEQFGKVDD 28 (75)
T ss_dssp ECCCSSCCHHHHHHHHHTTSCCSE
T ss_pred ecCCCCCCHHHHHHHHHhcCCEEE
Confidence 578899999999999999987643
No 229
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=86.29 E-value=0.25 Score=28.10 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.5
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
++++..+++++|.++|++||...
T Consensus 25 ~nLp~~~te~~L~~~F~~~G~I~ 47 (99)
T 4fxv_A 25 NYLPQNMTQDELRSLFSSIGEVE 47 (99)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEE
Confidence 67899999999999999998654
No 230
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=86.26 E-value=0.21 Score=27.77 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.1
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++.++++++|+++|++||...+
T Consensus 17 ~~Lp~~~te~~L~~~F~~~G~i~~ 40 (89)
T 3d2w_A 17 GRCTEDMTAEELQQFFCQYGEVVD 40 (89)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEE
T ss_pred eCCCCCCCHHHHHHHHhccCCEEE
Confidence 789999999999999999996543
No 231
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.05 E-value=0.3 Score=29.03 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.3
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
++++..+++++|+++|++||...+
T Consensus 37 gNLp~~vte~dL~~lF~~fG~V~~ 60 (119)
T 2ad9_A 37 RKLPIDVTEGEVISLGLPFGKVTN 60 (119)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCCCE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEE
Confidence 688999999999999999997654
No 232
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=85.92 E-value=0.5 Score=27.20 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=20.8
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
+|++.+.++++|.++|++||...
T Consensus 27 ~NLp~~~te~~L~~lF~~fG~V~ 49 (100)
T 3r27_A 27 RGLIDGVVEADLVEALQEFGPIS 49 (100)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEE
T ss_pred eCCCCCCCHHHHHHHHhccCCEE
Confidence 78899999999999999999754
No 233
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=85.56 E-value=0.52 Score=29.20 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.3
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 78 ~nLp~~~t~~~L~~~F~~~G~i~ 100 (165)
T 1rk8_A 78 TSIHEEAQEDEIQEKFCDYGEIK 100 (165)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEE
T ss_pred eCCCCCCCHHHHHHHhhcCCCEE
Confidence 67889999999999999998653
No 234
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.83 E-value=0.37 Score=26.40 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.8
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++..+++++|.++|++||....
T Consensus 11 ~nLp~~~te~~l~~~F~~~G~i~~ 34 (88)
T 1wf0_A 11 GRCTGDMTEDELREFFSQYGDVMD 34 (88)
T ss_dssp ESCCSSSCHHHHHHHSTTTSCCCE
T ss_pred eCCCCCCCHHHHHHHHHHcCCeeE
Confidence 678899999999999999987643
No 235
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.67 E-value=0.64 Score=25.60 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.8
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++..+++++|.++|++||....
T Consensus 16 ~nLp~~~t~~~l~~~F~~~G~v~~ 39 (92)
T 2dgt_A 16 GNISPTCTNQELRAKFEEYGPVIE 39 (92)
T ss_dssp ESCCSSCCHHHHHHHHHTTSCCCE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEE
Confidence 678899999999999999997643
No 236
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=82.46 E-value=0.68 Score=25.55 Aligned_cols=24 Identities=17% Similarity=0.118 Sum_probs=21.0
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++..+++++|.++|++||....
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~ 44 (95)
T 2ek1_A 21 QNMPFTVSIDEILDFFYGYQVIPG 44 (95)
T ss_dssp ECCCTTCCHHHHHHHTTTSCBCTT
T ss_pred eCCCCCCCHHHHHHHHHhcCCccc
Confidence 678899999999999999987653
No 237
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.06 E-value=0.82 Score=25.39 Aligned_cols=24 Identities=17% Similarity=0.118 Sum_probs=21.1
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++..+++++|.++|++||....
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~v~~ 44 (98)
T 2cqp_A 21 QNMPFTVSIDEILDFFYGYQVIPG 44 (98)
T ss_dssp ESCCTTCCHHHHHHHTTTSCCCTT
T ss_pred eCCCCCCCHHHHHHHHHHcCCccc
Confidence 578899999999999999997654
No 238
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=81.80 E-value=0.53 Score=26.58 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=19.7
Q ss_pred cccCcccCHHHHHHHHHHcCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGV 119 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~ 119 (124)
+|++...++++|.++|++||.
T Consensus 15 ~nL~~~~tee~L~~~F~~~G~ 35 (95)
T 2lkz_A 15 RNIAPHTVVDSIMTALSPYAS 35 (95)
T ss_dssp ESCCTTCCHHHHHHHSTTTCC
T ss_pred eCCCCcCCHHHHHHHHHhhCC
Confidence 789999999999999999995
No 239
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.76 E-value=0.76 Score=26.40 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.4
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
++++..+++++|.++|++||...
T Consensus 21 ~nLp~~~te~~L~~~F~~fG~V~ 43 (104)
T 1wex_A 21 RGLCESVVEADLVEALEKFGTIC 43 (104)
T ss_dssp ESCCSSCCHHHHHHHHTTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhCCCEE
Confidence 67899999999999999999654
No 240
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=81.75 E-value=0.86 Score=25.02 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=18.6
Q ss_pred cccCcccCHHHHHHHHHHcC
Q 033227 99 KKFDQKKKDDELAKMQEKYG 118 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g 118 (124)
++++...++++|.++|++||
T Consensus 7 ~nL~~~~t~~~l~~~F~~~G 26 (90)
T 3p5t_L 7 GNLTWWTTDEDLTEAVHSLG 26 (90)
T ss_dssp ESCCTTCCHHHHHHHHHTTT
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 57889999999999999999
No 241
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.74 E-value=1 Score=24.88 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.9
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++..+++++|.++|++||....
T Consensus 11 ~nLp~~~t~~~l~~~F~~~G~i~~ 34 (96)
T 1x5t_A 11 GNLDPEIDEKLLYDTFSAFGVILQ 34 (96)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCBSS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeE
Confidence 578899999999999999997654
No 242
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=81.65 E-value=0.8 Score=25.86 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 19 ~nlp~~~t~~~l~~~F~~~G~i~ 41 (106)
T 2dgp_A 19 GQIPRNLDEKDLKPLFEEFGKIY 41 (106)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCee
Confidence 57889999999999999998654
No 243
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.19 E-value=1.4 Score=24.22 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=19.5
Q ss_pred cccCcccCHHHHHHHHHHcCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGV 119 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~ 119 (124)
.+++..+++++|.++|++||.
T Consensus 14 ~nLp~~~t~~~l~~~F~~~G~ 34 (93)
T 2cqh_A 14 GNLSPAVTADDLRQLFGDRKL 34 (93)
T ss_dssp ECCCTTCCHHHHHHHHHHTTC
T ss_pred eCCCCCCCHHHHHHHHHHcCC
Confidence 678999999999999999997
No 244
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.96 E-value=0.88 Score=25.48 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.4
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 18 ~nLp~~~t~~~l~~~f~~~G~i~ 40 (102)
T 1x5s_A 18 GGLSFDTNEQSLEQVFSKYGQIS 40 (102)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCCC
T ss_pred ECCCCCCCHHHHHHHHHhcCCeE
Confidence 57889999999999999998764
No 245
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.95 E-value=0.63 Score=25.52 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.3
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 15 ~nlp~~~t~~~l~~~F~~~G~v~ 37 (90)
T 2dnp_A 15 GNVSAACTSQELRSLFERRGRVI 37 (90)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEE
T ss_pred eCCCCCCCHHHHHHHHHcCCCEE
Confidence 67889999999999999999654
No 246
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=80.68 E-value=0.48 Score=27.44 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=20.4
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++..+++++|.++|++||...+
T Consensus 12 ~nL~~~~te~~L~~~F~~~G~i~~ 35 (110)
T 3s8s_A 12 ARLNDNVRETFLKDMCRKYGEVEE 35 (110)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEE
T ss_pred ECCCCCCCHHHHHHHHHhcCCeeE
Confidence 468889999999999999997543
No 247
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=80.54 E-value=0.87 Score=25.69 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.7
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
+|++.++++++|.++|.+||...
T Consensus 13 gNL~~~~te~~L~~lF~q~G~V~ 35 (89)
T 2wbr_A 13 KNLTAQIDGPTLRTLCMQHGPLV 35 (89)
T ss_dssp ECCCTTCCCHHHHHHHHHHSCEE
T ss_pred eCCCccCCHHHHHHHHHhhCCEE
Confidence 78999999999999999999754
No 248
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.27 E-value=1.1 Score=24.97 Aligned_cols=23 Identities=4% Similarity=0.166 Sum_probs=20.5
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 15 ~nLp~~~t~~~l~~~F~~~G~i~ 37 (99)
T 2div_A 15 GDLEPYMDENFISRAFATMGETV 37 (99)
T ss_dssp CSCCTTCCHHHHHHHHHHTTCCC
T ss_pred eCCCCCCCHHHHHHHHHHhCCcc
Confidence 67899999999999999999654
No 249
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.25 E-value=0.87 Score=26.82 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=19.7
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++...++++|+++|++||...
T Consensus 33 g~L~~~~te~~L~~~F~~fG~v~ 55 (114)
T 2cq2_A 33 GGLGNGVSRNQLLPVLEKCGLVD 55 (114)
T ss_dssp CTGGGTCCHHHHHHHHHHHSCEE
T ss_pred CCCCCCCCHHHHHHHHHhcCCeE
Confidence 45888999999999999999653
No 250
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.17 E-value=1.6 Score=24.19 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=20.4
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 25 ~nL~~~~t~~~l~~~F~~~G~v~ 47 (97)
T 2e5j_A 25 GNLPRDARVSDLKRALRELGSVP 47 (97)
T ss_dssp ECCCTTCCHHHHHHHHHHTTCCC
T ss_pred eCCCCcCcHHHHHHHHHhcCCEE
Confidence 67889999999999999999753
No 251
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=80.02 E-value=0.94 Score=26.04 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.9
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++..+++++|.++|++||....
T Consensus 31 ~nLp~~~t~~~l~~~F~~~G~i~~ 54 (115)
T 2cpz_A 31 YHLPQEFGDQDLLQMFMPFGNVVS 54 (115)
T ss_dssp ESCCSSCCHHHHHHHHGGGSCCSE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEE
Confidence 678999999999999999986543
No 252
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=79.73 E-value=1.2 Score=24.06 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=20.0
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++...++++|.++|++||...
T Consensus 10 ~nlp~~~t~~~l~~~F~~~G~i~ 32 (88)
T 4a8x_A 10 GRLTRNVTKDHIMEIFSTYGKIK 32 (88)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhCCCEE
Confidence 57889999999999999998643
No 253
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=79.72 E-value=0.93 Score=25.37 Aligned_cols=24 Identities=8% Similarity=0.241 Sum_probs=20.4
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++..+++++|.++|++||....
T Consensus 33 ~nlp~~~~~~~l~~~f~~~G~i~~ 56 (101)
T 2la4_A 33 GNIPHFATEADLIPLFQNFGFILD 56 (101)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCCSE
T ss_pred cCCCcccCHHHHHHHHHhCCCEEE
Confidence 568889999999999999997543
No 254
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.65 E-value=0.64 Score=26.57 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.5
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++...++++|.++|++||...
T Consensus 17 ~~Lp~~~te~~L~~~F~~~G~v~ 39 (103)
T 1s79_A 17 KGFPTDATLDDIKEWLEDKGQVL 39 (103)
T ss_dssp ECCCTTCCHHHHHHHHHTSSCEE
T ss_pred ECCCCCCCHHHHHHHHhhcCCEE
Confidence 67899999999999999999654
No 255
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=79.34 E-value=1.1 Score=24.98 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=21.0
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++..+++++|.++|++||....
T Consensus 19 ~nLp~~~t~~~l~~~F~~~G~i~~ 42 (99)
T 2la6_A 19 QGLGENVTIESVADYFKQIGIIKT 42 (99)
T ss_dssp ECCCSSCCHHHHHHHHTTTSCBCE
T ss_pred eCCCCCCCHHHHHHHHHHhCCEee
Confidence 678999999999999999997653
No 256
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.34 E-value=1.2 Score=25.67 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 16 ~nLp~~~te~~L~~~F~~~G~i~ 38 (111)
T 1whx_A 16 KNLPAGTLAAEIQETFSRFGSLG 38 (111)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEE
Confidence 67889999999999999999653
No 257
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.02 E-value=0.97 Score=25.89 Aligned_cols=24 Identities=17% Similarity=0.309 Sum_probs=20.9
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
++++..+++++|.++|++||....
T Consensus 35 ~nLp~~~te~~l~~~F~~~G~i~~ 58 (109)
T 2err_A 35 SNIPFRFRDPDLRQMFGQFGKILD 58 (109)
T ss_dssp ESCCTTCCHHHHHHHGGGTCCCSC
T ss_pred ECCCCcCCHHHHHHHHHhcCCEEE
Confidence 678899999999999999997653
No 258
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=79.01 E-value=0.79 Score=25.86 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=20.3
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 17 ~nl~~~~t~~~l~~~F~~~G~i~ 39 (103)
T 2dgu_A 17 RNLANTVTEEILEKAFSQFGKLE 39 (103)
T ss_dssp ECCCTTCCHHHHHHHHHHHSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEE
Confidence 67889999999999999998654
No 259
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.00 E-value=0.75 Score=26.26 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=20.3
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~i~ 43 (108)
T 1x4c_A 21 SGLPPSGSWQDLKDHMREAGDVC 43 (108)
T ss_dssp ESCCSSCCHHHHHHHHGGGSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEe
Confidence 67899999999999999998643
No 260
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=78.66 E-value=0.78 Score=25.29 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 22 ~nlp~~~~~~~l~~~F~~~G~i~ 44 (95)
T 2ywk_A 22 GNLEARVREEILYELFLQAGPLT 44 (95)
T ss_dssp ECCCTTCCHHHHHHHHGGGSCEE
T ss_pred ECCCCCCCHHHHHHHHHhcCCEE
Confidence 67899999999999999998653
No 261
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.60 E-value=1 Score=25.17 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.8
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++..+++++|.++|++||....
T Consensus 18 ~nLp~~~t~~~l~~~f~~~G~i~~ 41 (102)
T 2cqb_A 18 GGLAEEVDDKVLHAAFIPFGDITD 41 (102)
T ss_dssp ESCCSSCCHHHHHHHHTTTSCCCC
T ss_pred eCCCCCCCHHHHHHHhhccCCEEE
Confidence 678899999999999999987643
No 262
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.45 E-value=0.84 Score=25.67 Aligned_cols=23 Identities=4% Similarity=0.131 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~ 43 (103)
T 2cqi_A 21 GNLSRDVTEVLILQLFSQIGPCK 43 (103)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEE
T ss_pred eCCCccCCHHHHHHHHHhcCCEe
Confidence 67889999999999999998653
No 263
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.40 E-value=0.75 Score=25.57 Aligned_cols=23 Identities=17% Similarity=0.292 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 11 ~nLp~~~t~~~l~~~F~~~G~i~ 33 (98)
T 2cpf_A 11 KNLNFSTTEETLKGVFSKVGAIK 33 (98)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeE
Confidence 67889999999999999998653
No 264
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.36 E-value=1.4 Score=24.47 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.4
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 23 ~nlp~~~t~~~l~~~F~~~G~v~ 45 (97)
T 1why_A 23 GGLGPNTSLAALAREFDRFGSIR 45 (97)
T ss_dssp ECCCSSCCHHHHHHHHHTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCee
Confidence 67899999999999999998653
No 265
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.21 E-value=0.81 Score=26.06 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 28 ~nLp~~~t~~~l~~~F~~~G~v~ 50 (109)
T 1x4a_A 28 GNLPPDIRTKDIEDVFYKYGAIR 50 (109)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeE
Confidence 67889999999999999998653
No 266
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.01 E-value=0.68 Score=26.48 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.5
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
++++..+++++|.++|++||...
T Consensus 21 ~nLp~~~te~~L~~~F~~fG~v~ 43 (101)
T 2cq1_A 21 RKLPGEVTETEVIALGLPFGKVT 43 (101)
T ss_dssp ESCCTTCCHHHHHHTTTTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEE
Confidence 67899999999999999999654
No 267
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=77.83 E-value=1.2 Score=25.32 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.9
Q ss_pred cccCcc-cCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQK-KKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~-~~~~~l~~~~~~~g~~~~ 122 (124)
.+++.. +++++|.++|++||....
T Consensus 33 ~nl~~~~~t~~~l~~~F~~~G~v~~ 57 (110)
T 1wf1_A 33 GNLNTALVKKSDVETIFSKYGRVAG 57 (110)
T ss_dssp CSCCCSSCCHHHHHHHHGGGSCCSE
T ss_pred eCCCcccCCHHHHHHHHHhCCCeEE
Confidence 678888 999999999999997653
No 268
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.72 E-value=1.2 Score=25.02 Aligned_cols=23 Identities=9% Similarity=0.211 Sum_probs=20.3
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 14 ~nlp~~~~~~~l~~~f~~~G~i~ 36 (104)
T 1p1t_A 14 GNIPYEATEEQLKDIFSEVGPVV 36 (104)
T ss_dssp ESCCTTSCHHHHHHHHHTTSCCS
T ss_pred eCCCCcCCHHHHHHHHHhcCCee
Confidence 67889999999999999998654
No 269
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.51 E-value=0.87 Score=25.68 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.4
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 22 ~nlp~~~t~~~l~~~F~~~G~v~ 44 (105)
T 2dh8_A 22 GGLDWSTTQETLRSYFSQYGEVV 44 (105)
T ss_dssp BSCCTTCCHHHHHHHHHTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeE
Confidence 78899999999999999998653
No 270
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=76.96 E-value=1.1 Score=25.75 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=20.9
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++..+++++|.++|++||....
T Consensus 37 ~nLp~~~t~~~L~~~F~~~G~i~~ 60 (108)
T 2jvo_A 37 RPFPLDVQESELNEIFGPFGPMKE 60 (108)
T ss_dssp CSSCTTCCHHHHHHHHTTTSCCCE
T ss_pred ECCCCCCCHHHHHHHHHhcCCEEE
Confidence 678999999999999999997643
No 271
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.92 E-value=1.6 Score=24.02 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++...++++|.++|++||...
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~v~ 43 (96)
T 2e44_A 21 RNIPPHLQWEVLDSLLVQYGVVE 43 (96)
T ss_dssp EEECSSSCHHHHHHHHHHHSCEE
T ss_pred EcCCCCCCHHHHHHHHHhcCCeE
Confidence 67889999999999999999643
No 272
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=76.67 E-value=1.5 Score=25.90 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=21.1
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
++++..+++++|.++|++||....
T Consensus 29 ~nL~~~~te~~L~~~F~~~G~v~~ 52 (131)
T 2m2b_A 29 RNLNPHSTMDSILGALAPYAVLSS 52 (131)
T ss_dssp CSCCTTCCSHHHHHHHGGGCCCCT
T ss_pred eCCCCCCCHHHHHHHHHHhCCcce
Confidence 678999999999999999987643
No 273
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.64 E-value=0.9 Score=25.65 Aligned_cols=23 Identities=9% Similarity=0.277 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~ 43 (107)
T 2cph_A 21 RNIPFQANQREIRELFSTFGELK 43 (107)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEE
T ss_pred eCCCCcCCHHHHHHHHHccCCeE
Confidence 67899999999999999998653
No 274
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=76.33 E-value=1.2 Score=24.81 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=20.5
Q ss_pred cccCc-ccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQ-KKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~-~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++. ..++++|.++|++||....
T Consensus 16 ~nlp~~~~t~~~l~~~F~~~G~v~~ 40 (96)
T 2kvi_A 16 GNLPLKNVSKEDLFRIFSPYGHIMQ 40 (96)
T ss_dssp ESSTTSCCCHHHHHHHHTTTCCCCE
T ss_pred eCCCcccCCHHHHHHHHHhcCCEEE
Confidence 67887 9999999999999997653
No 275
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.09 E-value=1.7 Score=24.09 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=19.9
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 14 ~nlp~~~t~~~l~~~F~~~G~i~ 36 (99)
T 1whw_A 14 RNLSYTSSEEDLEKLFSAYGPLS 36 (99)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEe
Confidence 57889999999999999998643
No 276
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.68 E-value=1.4 Score=25.38 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 14 gnLp~~~te~~L~~~F~~~G~i~ 36 (114)
T 2dnl_A 14 GGLPPDIDEDEITASFRRFGPLV 36 (114)
T ss_dssp ECCCTTCCHHHHHHHTTTTCCCC
T ss_pred cCCCCCCCHHHHHHHHHhcCCEE
Confidence 57889999999999999998654
No 277
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=75.64 E-value=4.3 Score=25.80 Aligned_cols=56 Identities=13% Similarity=0.053 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHh--CCceeCCeEEEEEEee--cccc---------------ccccCcccCHHHHHHHHHHcCCCC
Q 033227 66 DIYDAKTAVDHL--SGFNVANRYLIVLYYQ--QTKM---------------SKKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 66 ~~~~a~~a~~~l--~~~~i~g~~l~v~~~~--~~~~---------------~~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
+...+..|+... ....+.+....+.... +... ..+++...++++|+++|++||...
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~ 137 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVL 137 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEE
Confidence 456777787776 5566665544554442 1110 178999999999999999998643
No 278
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=75.62 E-value=1.5 Score=26.67 Aligned_cols=22 Identities=5% Similarity=0.143 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVS 120 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~ 120 (124)
.+++...++++|.++|++||+.
T Consensus 52 ~nLp~~~te~dL~~~F~~~Gi~ 73 (139)
T 2hgn_A 52 RGLPYKATENDIYNFFSPLNPV 73 (139)
T ss_dssp CSCCTTCCHHHHHHHHCSCCCS
T ss_pred eCCCCCCCHHHHHHHHHhcCCe
Confidence 7899999999999999999953
No 279
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.58 E-value=1 Score=25.96 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.1
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 23 ~nlp~~~t~~~l~~~F~~~G~i~ 45 (116)
T 2cqd_A 23 GGLPYHTTDASLRKYFEGFGDIE 45 (116)
T ss_dssp ECCCSSCCHHHHHHHHHTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhCCCee
Confidence 57889999999999999998653
No 280
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.44 E-value=1.1 Score=25.72 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.3
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 33 ~nLp~~~te~~l~~~F~~~G~i~ 55 (116)
T 1x4b_A 33 GGLSFETTEESLRNYYEQWGKLT 55 (116)
T ss_dssp ECCTTCCCHHHHHHHHTSSCCCS
T ss_pred eCCCCCCCHHHHHHHHHhcCCEE
Confidence 67889999999999999998654
No 281
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.31 E-value=1.1 Score=25.86 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=20.4
Q ss_pred cccCcccCHHHHHHHHHHcCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVS 120 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~ 120 (124)
.+++..+++++|.++|+.||..
T Consensus 21 ~nLp~~~t~~~l~~~F~~~g~v 42 (114)
T 2cpy_A 21 TNIPFSITKMDVLQFLEGIPVD 42 (114)
T ss_dssp ESCCTTSCHHHHHHHTTTSCCC
T ss_pred eCcCCcCCHHHHHHHHHhCCCc
Confidence 6789999999999999999986
No 282
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.15 E-value=2 Score=25.44 Aligned_cols=22 Identities=5% Similarity=-0.005 Sum_probs=19.9
Q ss_pred cccCcccCHHHHHHHHHHcCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVS 120 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~ 120 (124)
.+++...++++|.++|++||..
T Consensus 29 ~nLp~~~te~dl~~~F~~~g~v 50 (123)
T 2dha_A 29 RGLPFTATAEEVVAFFGQHCPI 50 (123)
T ss_dssp CSCCTTCCHHHHHHHHHTTSCC
T ss_pred eCCCCCCCHHHHHHHHHhhCCc
Confidence 6899999999999999999853
No 283
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.10 E-value=2 Score=24.02 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=20.1
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~ 43 (103)
T 2cqg_A 21 LGLPWKTTEQDLKEYFSTFGEVL 43 (103)
T ss_dssp ESCCSSCCHHHHHHHHGGGSCEE
T ss_pred EcCCCcCCHHHHHHHHHhcCCeE
Confidence 67899999999999999998643
No 284
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.63 E-value=1.1 Score=25.47 Aligned_cols=22 Identities=9% Similarity=0.398 Sum_probs=19.8
Q ss_pred cccCcccCHHHHHHHHHHcCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVS 120 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~ 120 (124)
.+++..+++++|.++|++||..
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~i 42 (111)
T 1x4h_A 21 RNLSFDSEEEALGEVLQQFGDL 42 (111)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCE
T ss_pred ECCCCCCCHHHHHHHHHhcCCe
Confidence 6789999999999999999854
No 285
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=74.20 E-value=0.96 Score=25.94 Aligned_cols=23 Identities=9% Similarity=0.198 Sum_probs=20.3
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 31 ~nLp~~~te~~L~~~F~~~G~i~ 53 (109)
T 2rs2_A 31 GGLSWQTTQEGLREYFGQFGEVK 53 (109)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHccCCeE
Confidence 67899999999999999998653
No 286
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=74.19 E-value=1.2 Score=25.54 Aligned_cols=23 Identities=4% Similarity=0.202 Sum_probs=20.0
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~ 43 (115)
T 2dgo_A 21 GDLSPEITTEDIKAAFAPFGRIS 43 (115)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeE
Confidence 57889999999999999998653
No 287
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.88 E-value=2.4 Score=24.05 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=20.0
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 31 ~nl~~~~t~~~l~~~F~~~G~i~ 53 (109)
T 1x4g_A 31 GGIASGLTDQLMRQTFSPFGQIM 53 (109)
T ss_dssp ECCSSCCCHHHHHHHHHHHSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeE
Confidence 67888999999999999999653
No 288
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=73.77 E-value=2.1 Score=24.09 Aligned_cols=23 Identities=13% Similarity=0.354 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 35 ~nlp~~~t~~~l~~~F~~~G~i~ 57 (107)
T 3ulh_A 35 SNLDFGVSDADIQELFAEFGTLK 57 (107)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeE
Confidence 57889999999999999998653
No 289
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=73.75 E-value=1.8 Score=27.20 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.6
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.|++..+++++|.++|++||...
T Consensus 52 gNL~~~vted~L~~~Fs~fG~V~ 74 (164)
T 1sjr_A 52 ENLFYPVTLDVLHQIFSKFGTVL 74 (164)
T ss_dssp CSCCSCCCHHHHHHHHHHHSCEE
T ss_pred eCcCCCCCHHHHHHHHHhcCCEE
Confidence 67889999999999999999754
No 290
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=73.29 E-value=1.1 Score=26.08 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=19.9
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 42 ~nlp~~~t~~~l~~~F~~~G~i~ 64 (124)
T 2jwn_A 42 GNVDYGSTAQDLEAHFSSCGSIN 64 (124)
T ss_dssp EEECTTCCHHHHHHHHHTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEE
Confidence 56888999999999999998653
No 291
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.89 E-value=2.2 Score=24.28 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.7
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~i~ 43 (113)
T 2cpe_A 21 QGLNDSVTLDDLADFFKQCGVVK 43 (113)
T ss_dssp ECCCTTCCHHHHHHHHTTTSCBC
T ss_pred cCCCCCCCHHHHHHHHHhcCCEe
Confidence 67889999999999999999765
No 292
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.27 E-value=1.5 Score=24.31 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=19.9
Q ss_pred cccCcccCHHHHH----HHHHHcCCCC
Q 033227 99 KKFDQKKKDDELA----KMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~----~~~~~~g~~~ 121 (124)
.+++..+++++|+ ++|++||...
T Consensus 15 ~nL~~~~~~~~l~~~l~~~F~~~G~v~ 41 (96)
T 2dgx_A 15 SNIDYRLSRKELQQLLQEAFARHGKVK 41 (96)
T ss_dssp ESCCTTSCHHHHHHHHHHHHHHHSCEE
T ss_pred ECCCCCCCHHHHHHHHHHhccccCcEE
Confidence 6788999999999 9999999543
No 293
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=72.08 E-value=2 Score=25.87 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.|++..+++++|.++|++||...
T Consensus 34 ~NL~~~vte~~L~~lFs~yG~V~ 56 (130)
T 3zzy_A 34 ENLFYPVTLDVLHQIFSKFGTVL 56 (130)
T ss_dssp ESCCSCCCHHHHHHHHTTSSCEE
T ss_pred CCCCCCCCHHHHHHHHhCcCCEE
Confidence 67788999999999999999754
No 294
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=71.84 E-value=3 Score=24.91 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=20.3
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 51 ~nLp~~~te~~L~~~F~~~G~i~ 73 (143)
T 3egn_A 51 KNLAKHVQEKDLKYIFGRYVDFS 73 (143)
T ss_dssp EEECTTCCHHHHHHHHGGGCCTT
T ss_pred eCCCCCCCHHHHHHHHHHhCCcc
Confidence 67889999999999999999654
No 295
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.68 E-value=1.6 Score=25.54 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=21.1
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++..+++++|.++|+.||....
T Consensus 31 ~nLp~~~te~~l~~~F~~~G~v~~ 54 (124)
T 1wel_A 31 KGLPFEAENKHVIDFFKKLDIVED 54 (124)
T ss_dssp ECCCTTCCHHHHHHHSCSSCBCTT
T ss_pred eCCCCCCCHHHHHHHHHhcCCccc
Confidence 678999999999999999997654
No 296
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=71.64 E-value=2.5 Score=24.15 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=19.8
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++...++++|.++|++||...
T Consensus 14 ~nlp~~~t~~~l~~~F~~~G~v~ 36 (115)
T 3lqv_A 14 RNLPYKITAEEMYDIFGKYGPIR 36 (115)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeE
Confidence 46788999999999999999654
No 297
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=71.46 E-value=2 Score=24.95 Aligned_cols=23 Identities=13% Similarity=0.354 Sum_probs=20.0
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++...++++|.++|++||...
T Consensus 41 ~nlp~~~t~~~l~~~F~~~G~v~ 63 (124)
T 2kt5_A 41 SNLDFGVSDADIQELFAEFGTLK 63 (124)
T ss_dssp ESCCSSCCHHHHHHHHHTTSCCS
T ss_pred eCCCCCCCHHHHHHHHHhcCCee
Confidence 57889999999999999998654
No 298
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.38 E-value=3.1 Score=23.21 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.6
Q ss_pred cccCcccCHHHHHHHHHH-cCCC
Q 033227 99 KKFDQKKKDDELAKMQEK-YGVS 120 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~-~g~~ 120 (124)
.+++..+++++|.++|++ ||..
T Consensus 15 ~nLp~~~t~~~l~~~F~~~~G~v 37 (104)
T 2dhg_A 15 GDLTPDVDDGMLYEFFVKVYPSC 37 (104)
T ss_dssp ECCCTTCCHHHHHHHHHHHCTTE
T ss_pred eCCCCCCCHHHHHHHHHHhCCCe
Confidence 678999999999999999 9854
No 299
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=71.07 E-value=1.6 Score=25.87 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|+.||...
T Consensus 48 ~nLp~~~~~~~l~~~F~~~G~i~ 70 (139)
T 1u6f_A 48 NYIPTTVDEVQLRQLFERYGPIE 70 (139)
T ss_dssp ESCSTTCCHHHHHHHHHHHSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeE
Confidence 57889999999999999998654
No 300
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=70.48 E-value=1.3 Score=26.31 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.4
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 52 ~nLp~~~te~~L~~~F~~~G~I~ 74 (129)
T 2kxn_B 52 FGLSLYTTERDLREVFSKYGPIA 74 (129)
T ss_dssp ETCTTSCCHHHHHHHHTTTSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeE
Confidence 78999999999999999998653
No 301
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=70.31 E-value=1.3 Score=26.34 Aligned_cols=24 Identities=13% Similarity=-0.039 Sum_probs=20.6
Q ss_pred cccCcccCHHHHHHHHHHcCCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVSTK 122 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~ 122 (124)
.+++..+++++|.++|++||...+
T Consensus 31 ~NL~~~vt~~~L~~~Fs~yG~V~~ 54 (124)
T 2e5i_A 31 QNPLYPITVDVLYTVCNPVGKVQR 54 (124)
T ss_dssp ESCCSCCCHHHHHHHHTTTSCEEE
T ss_pred cCcCCCCCHHHHHHHHHhcCCEEE
Confidence 578889999999999999997543
No 302
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=70.23 E-value=3.1 Score=25.54 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=18.9
Q ss_pred cccCcccCHHHHHHHHHHcC
Q 033227 99 KKFDQKKKDDELAKMQEKYG 118 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g 118 (124)
++++..+++++|.++|++||
T Consensus 61 gnLp~~~te~~L~~~F~~~G 80 (156)
T 3n9u_C 61 GSFSWWTTDQQLIQVIRSIG 80 (156)
T ss_dssp ECCCTTCCHHHHHHHHHHTT
T ss_pred eCCCCCCCHHHHHHHHHHHC
Confidence 67899999999999999999
No 303
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=67.69 E-value=3.5 Score=24.28 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.1
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++...++++|.++|++||...
T Consensus 69 ~nlp~~~~~~~l~~~f~~~G~i~ 91 (140)
T 2ku7_A 69 GGLAEEVDDKVLHAAFIPFGDIT 91 (140)
T ss_dssp ECCCTTCCHHHHHHHHGGGSCEE
T ss_pred EeCCCCCCHHHHHHHHHhcCCEE
Confidence 67889999999999999998653
No 304
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=67.51 E-value=2.1 Score=25.84 Aligned_cols=21 Identities=0% Similarity=0.077 Sum_probs=19.9
Q ss_pred cccCcccCHHHHHHHHHHcCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGV 119 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~ 119 (124)
.+++...++++|.++|+++|.
T Consensus 50 gnLp~~~te~dL~~~F~~~G~ 70 (136)
T 2hgl_A 50 RGLPWSCSVEDVQNFLSDCTI 70 (136)
T ss_dssp ESCCTTCCHHHHHHHTTTCCC
T ss_pred eCCCCCCCHHHHHHHHHHhCC
Confidence 789999999999999999997
No 305
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=66.73 E-value=3.3 Score=25.99 Aligned_cols=23 Identities=13% Similarity=0.354 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 94 ~nLp~~~te~~L~~~F~~~G~I~ 116 (177)
T 2f3j_A 94 SNLDFGVSDADIQELFAEFGTLK 116 (177)
T ss_dssp ECCCSCCCHHHHHHHHHHTSCCS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeE
Confidence 57889999999999999998654
No 306
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=65.87 E-value=3.1 Score=22.16 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=35.8
Q ss_pred CCCHHHHHHHhccCCc-----eeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEee
Q 033227 29 NISSEEMYDIFGKYGA-----IRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ 93 (124)
Q Consensus 29 ~~~~~~l~~~f~~~g~-----i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 93 (124)
.+...+|..++..-+. |-.+.+. + .|.||+... ..+..++..|++..+.|+.+++..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~-d----~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM-D----NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC-S----SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe-C----CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4455666666654333 3345543 2 488998884 56788889999999999998887653
No 307
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=65.66 E-value=2.3 Score=25.82 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=20.2
Q ss_pred cccCcccCHHHHHHHHHHcCCCC
Q 033227 99 KKFDQKKKDDELAKMQEKYGVST 121 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~ 121 (124)
.+++..+++++|.++|++||...
T Consensus 45 ~nlp~~~t~~~l~~~F~~~G~i~ 67 (156)
T 1h2v_Z 45 GNLSFYTTEEQIYELFSKSGDIK 67 (156)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeE
Confidence 67889999999999999998653
No 308
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=59.29 E-value=5.5 Score=26.09 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=19.0
Q ss_pred cccCcccCHHHHHHHHHHcC
Q 033227 99 KKFDQKKKDDELAKMQEKYG 118 (124)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g 118 (124)
.+++..+++++|.++|++||
T Consensus 74 gnL~~~~te~~L~~~F~~~G 93 (229)
T 3q2s_C 74 GNLTWWTTDEDLTEAVHSLG 93 (229)
T ss_dssp ESCCTTCCHHHHHHHHHTTT
T ss_pred eCCCCCCCHHHHHHHHHHHC
Confidence 68899999999999999999
No 309
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=49.31 E-value=47 Score=20.96 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=34.1
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHh--ccCCceeEEEeccCCCCccEEEEEecCHH-HHHHHHH
Q 033227 20 VLYVRNLPF-N--------ISSEEMYDIF--GKYGAIRQIRIGSSKDTRGTAFVVYEDIY-DAKTAVD 75 (124)
Q Consensus 20 ~l~v~~l~~-~--------~~~~~l~~~f--~~~g~i~~~~~~~~~~~~g~~fv~f~~~~-~a~~a~~ 75 (124)
.+.|-|+|- . .....|.+.| +.|.++.-..+.-.....|++.|.|.+.- .-..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 566777775 1 3346788877 89988764333222233689999999633 3333444
No 310
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=45.68 E-value=28 Score=24.53 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=35.0
Q ss_pred EEEEcCCCCC---CCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHH
Q 033227 20 VLYVRNLPFN---ISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDH 76 (124)
Q Consensus 20 ~l~v~~l~~~---~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 76 (124)
.-+|+|+... -....+.++..+||.|..+.+- +.-.+...+.+.+..++..
T Consensus 18 ~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g------~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 18 LPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG------SQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp BTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET------TEEEEEECSHHHHHHHHHT
T ss_pred cccccChhhhccccHhHHHHHHHHHhCCEEEEEEC------CccEEEECCHHHHHHHHhc
Confidence 3346666432 2245677888899998877662 4567888889988888763
No 311
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=44.48 E-value=45 Score=23.70 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=34.6
Q ss_pred EEEEcCCCCCC----CHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHH
Q 033227 20 VLYVRNLPFNI----SSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVD 75 (124)
Q Consensus 20 ~l~v~~l~~~~----~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 75 (124)
.-+|+|+..-. ....+.++..+||+|..+.+- +.-.|...+.+.+..++.
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~ 69 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI 69 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH
Confidence 44578775432 235577777899998887763 355677788888888875
No 312
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=38.45 E-value=27 Score=18.97 Aligned_cols=20 Identities=5% Similarity=0.154 Sum_probs=17.1
Q ss_pred ccCHHHHHHHHHHcCCCCCC
Q 033227 104 KKKDDELAKMQEKYGVSTKD 123 (124)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~~ 123 (124)
-.++++.++++++|++..+|
T Consensus 16 iLs~eEk~~lL~~y~i~~~q 35 (77)
T 1eik_A 16 ILNESEAKRVLKELDAHPEQ 35 (77)
T ss_dssp EECHHHHHHHHHHTTCCTTT
T ss_pred EcCHHHHHHHHHHcCCCHHH
Confidence 36789999999999998776
No 313
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=36.88 E-value=57 Score=18.34 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=54.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCC-------ceeCCeEEE
Q 033227 16 EVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSG-------FNVANRYLI 88 (124)
Q Consensus 16 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~-------~~i~g~~l~ 88 (124)
..++-+-|-|+|..+-..++.-.....|---.+..+ | |-+.+.|.+.++...|+..|-+ ..+.|+.+.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-d----gqamirfqnsdeqrlaiqkllnhnnnklqieirgqicd 84 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-D----GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICD 84 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-S----SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-c----CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeee
Confidence 346888899999999988877666666765566554 2 5799999999998888887643 245577766
Q ss_pred EEEeecc
Q 033227 89 VLYYQQT 95 (124)
Q Consensus 89 v~~~~~~ 95 (124)
|-..-|.
T Consensus 85 vistipe 91 (129)
T 4eyt_A 85 VISTIPE 91 (129)
T ss_dssp EECCCCH
T ss_pred eeecCCc
Confidence 6554443
No 314
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=32.30 E-value=42 Score=23.60 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=30.4
Q ss_pred EEcCCCCC---CCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHH
Q 033227 22 YVRNLPFN---ISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVD 75 (124)
Q Consensus 22 ~v~~l~~~---~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 75 (124)
+|+|+..- -....+.++..+||+|-.+.+- +.-.|...+.+.+..++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH
Confidence 45665432 2334567788899999887762 234566667777776653
No 315
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=29.79 E-value=26 Score=19.10 Aligned_cols=21 Identities=10% Similarity=0.400 Sum_probs=16.8
Q ss_pred cccCHHHHHHHHHHcCCCCCC
Q 033227 103 QKKKDDELAKMQEKYGVSTKD 123 (124)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~~ 123 (124)
.-+++++.++++++|++..+|
T Consensus 13 ~iLs~eEk~~lL~~y~i~~~q 33 (78)
T 1hmj_A 13 EIVPKEEVEEILKRYNIKIQQ 33 (78)
T ss_pred EECCHHHHHHHHHHcCCCHHH
Confidence 346789999999999987654
No 316
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.28 E-value=15 Score=22.52 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=14.2
Q ss_pred HHhccCCceeEEEeccCCCCccEEEEEec
Q 033227 37 DIFGKYGAIRQIRIGSSKDTRGTAFVVYE 65 (124)
Q Consensus 37 ~~f~~~g~i~~~~~~~~~~~~g~~fv~f~ 65 (124)
.++...|.|.... ..+||+||.-.
T Consensus 6 ~l~~~~G~Vkwfn-----~~kGfGFI~~~ 29 (148)
T 3ts2_A 6 QLLHGAGICKWFN-----VRMGFGFLSMT 29 (148)
T ss_dssp CCEEEEEEEEEEE-----TTTTEEEEEEE
T ss_pred ccccceeEEEEEE-----CCCCeeEEeeC
Confidence 4455556554433 23689999865
No 317
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=27.63 E-value=61 Score=17.86 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=24.2
Q ss_pred eeEEEeccCCCCccEEEEEecCHHHHHHHHHHhCCc
Q 033227 45 IRQIRIGSSKDTRGTAFVVYEDIYDAKTAVDHLSGF 80 (124)
Q Consensus 45 i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 80 (124)
+.++.+... =.||.||++...++...++....|.
T Consensus 40 i~~v~vP~~--fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES--LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT--STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc--cCCEEEEEEecchhHHHHHHCCCCc
Confidence 445555422 3699999999988888887776664
No 318
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=27.52 E-value=44 Score=18.40 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.4
Q ss_pred ccCHHHHHHHHHHcCCCCCC
Q 033227 104 KKKDDELAKMQEKYGVSTKD 123 (124)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~~ 123 (124)
..++++.+++.++|++..+|
T Consensus 22 vLs~eE~~~ll~~y~i~~~q 41 (84)
T 4ayb_H 22 VLSIDEAYKILKELGIRPEQ 41 (84)
T ss_dssp ECCHHHHHHHHHHHTCCGGG
T ss_pred ECCHHHHHHHHHHhcCCHhH
Confidence 45788999999999987665
No 319
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.39 E-value=68 Score=21.49 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=25.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhccCCceeEEEec
Q 033227 18 NRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIG 51 (124)
Q Consensus 18 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~ 51 (124)
...+.|+|+|.+++...|..++.. +.+..+.++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 356789999999999999988876 666655443
No 320
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=25.26 E-value=1.3e+02 Score=21.18 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=28.3
Q ss_pred EEEcCCCCC--CCHHHHHHHhccCCceeEEEeccCCCCccEEEEEecCHHHHHHHHH
Q 033227 21 LYVRNLPFN--ISSEEMYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIYDAKTAVD 75 (124)
Q Consensus 21 l~v~~l~~~--~~~~~l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 75 (124)
-+++|+..- -....+.++..+||.|..+.+- +.-+|...+.+.+...+.
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC------CccEEEECCHHHHHHHHH
Confidence 456665432 2234567778899998877662 456777788888887764
No 321
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=23.52 E-value=1.5e+02 Score=18.76 Aligned_cols=47 Identities=9% Similarity=0.106 Sum_probs=32.3
Q ss_pred EEcCCCCCCCHHH--------HHHHhccCCceeEEEeccCCCCccEEEEEecCHH
Q 033227 22 YVRNLPFNISSEE--------MYDIFGKYGAIRQIRIGSSKDTRGTAFVVYEDIY 68 (124)
Q Consensus 22 ~v~~l~~~~~~~~--------l~~~f~~~g~i~~~~~~~~~~~~g~~fv~f~~~~ 68 (124)
++-.||...+.++ +++.|..+|.+..+-+-.++....++.|.++++.
T Consensus 74 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~R~ 128 (185)
T 2ns6_A 74 VEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISERI 128 (185)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECCBC
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEeecc
Confidence 3447999988764 3445667788777666554445679999988754
No 322
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=23.21 E-value=36 Score=22.94 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=25.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCceeEEEec
Q 033227 19 RVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIG 51 (124)
Q Consensus 19 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~ 51 (124)
....|+|+|.+++...|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 467899999999999999998765555555443
No 323
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.92 E-value=85 Score=23.97 Aligned_cols=53 Identities=9% Similarity=0.158 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHhc----cCCceeEEEecc--CCCCccEEEEEecCHHHHHHHHHHhC
Q 033227 26 LPFNISSEEMYDIFG----KYGAIRQIRIGS--SKDTRGTAFVVYEDIYDAKTAVDHLS 78 (124)
Q Consensus 26 l~~~~~~~~l~~~f~----~~g~i~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~l~ 78 (124)
.+...+-.+|..+|- .+|.|.++.+.. -.....++++.|.+.++|..++..+.
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 344444446666662 567788865543 34445678899999999988887653
Done!