BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033229
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With Nadh Bound
Length = 1332
Score = 33.1 bits (74), Expect = 0.040, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
Query: 13 PTYMS----FKR-----IQMYEKYPKGQSR----GRHWKHLKQILQAENYQNYPPDEPNY 59
PTY S F++ IQ++++ P GQS+ GR HL +QA Y D P Y
Sbjct: 540 PTYTSATLLFQKDPPANIQLFQEVPNGQSKEDTVGRPLPHLAAAMQASGEAVYCDDIPRY 599
Query: 60 VN 61
N
Sbjct: 600 EN 601
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor
Tei- 6720 Bound
Length = 1331
Score = 33.1 bits (74), Expect = 0.041, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
Query: 13 PTYMS----FKR-----IQMYEKYPKGQSR----GRHWKHLKQILQAENYQNYPPDEPNY 59
PTY S F++ IQ++++ P GQS+ GR HL +QA Y D P Y
Sbjct: 539 PTYTSATLLFQKHPPANIQLFQEVPNGQSKEDTVGRPLPHLAAAMQASGEAVYCDDIPRY 598
Query: 60 VN 61
N
Sbjct: 599 EN 600
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
With A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 33.1 bits (74), Expect = 0.041, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
Query: 13 PTYMS----FKR-----IQMYEKYPKGQSR----GRHWKHLKQILQAENYQNYPPDEPNY 59
PTY S F++ IQ++++ P GQS+ GR HL +QA Y D P Y
Sbjct: 540 PTYTSATLLFQKHPPANIQLFQEVPNGQSKEDTVGRPLPHLAAAMQASGEAVYCDDIPRY 599
Query: 60 VN 61
N
Sbjct: 600 EN 601
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 32.0 bits (71), Expect = 0.097, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 21 IQMYEKYPKGQSR----GRHWKHLKQILQAENYQNYPPDEPNYVN 61
+Q++++ PKGQS GR HL +QA Y D P Y N
Sbjct: 558 VQLFQEVPKGQSEEDMVGRPLPHLAADMQASGEAVYCDDIPRYEN 602
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 32.0 bits (71), Expect = 0.098, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 21 IQMYEKYPKGQSR----GRHWKHLKQILQAENYQNYPPDEPNYVN 61
+Q++++ PKGQS GR HL +QA Y D P Y N
Sbjct: 558 VQLFQEVPKGQSEEDMVGRPLPHLAADMQASGEAVYCDDIPRYEN 602
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 28.9 bits (63), Expect = 0.69, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 21 IQMYEKYPKGQSR----GRHWKHLKQILQAENYQNYPPDEPNYVN 61
+Q++++ PK QS GR HL +QA Y D P Y N
Sbjct: 557 VQLFQEVPKDQSEEDMVGRPLPHLAANMQASGEAVYCDDIPRYEN 601
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 28.9 bits (63), Expect = 0.69, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 21 IQMYEKYPKGQSR----GRHWKHLKQILQAENYQNYPPDEPNYVN 61
+Q++++ PK QS GR HL +QA Y D P Y N
Sbjct: 557 VQLFQEVPKDQSEEDMVGRPLPHLAANMQASGEAVYCDDIPRYEN 601
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 21 IQMYEKYPKGQSR----GRHWKHLKQILQAENYQNYPPDEPNYVN 61
+Q++++ PK QS GR HL +QA Y D P Y N
Sbjct: 557 VQLFQEVPKDQSEEDMVGRPLPHLAANMQASGEAVYCDDIPRYEN 601
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 78 TGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYVQR 112
TG APY+DP YA +F L R + ++ R
Sbjct: 349 TGLGAPYWDP-----YARGAIFGLTRGVNANHIIR 378
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 78 TGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYVQR 112
TG APY+DP YA +F L R + ++ R
Sbjct: 349 TGLGAPYWDP-----YARGAIFGLTRGVNANHIIR 378
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 78 TGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYVQR 112
TG APY+DP YA +F L R + ++ R
Sbjct: 349 TGLGAPYWDP-----YARGAIFGLTRGVNANHIIR 378
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 78 TGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYVQR 112
TG APY+DP YA +F L R + ++ R
Sbjct: 349 TGLGAPYWDP-----YARGAIFGLTRGVNANHIIR 378
>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 447
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 7 EAELVLPTYMSFKRIQMYEKYPKGQSRGRHW 37
E+ + P +KR Q+ E P+ RGR W
Sbjct: 42 ESSSITPLEELYKRFQLLEGPPETMGRGRDW 72
>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide
Dissociation Inhibitor (Gdi) In Complex With A
Geranylgeranyl (Gg) Peptide
Length = 449
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 7 EAELVLPTYMSFKRIQMYEKYPKGQSRGRHW 37
E+ + P +KR Q+ E P+ RGR W
Sbjct: 44 ESSSITPLEELYKRFQLLEGPPETMGRGRDW 74
>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 433
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 7 EAELVLPTYMSFKRIQMYEKYPKGQSRGRHW 37
E+ + P +KR Q+ E P+ RGR W
Sbjct: 44 ESSSITPLEELYKRFQLLEGPPETMGRGRDW 74
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 79 GFEAPYYDPRTNLRYANAEVFKL-VRSLPNEYVQRYLALRNAAVVLK 124
G EA ++P + +A + KL + +L E VQ L L+NA VVLK
Sbjct: 781 GVEA--HNPNAYVXHAGRGIHKLEIEALVAEDVQPQLQLKNAEVVLK 825
>pdb|2WSP|A Chain A, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
pdb|2WSP|B Chain B, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
Length = 449
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 24 YEKYPKGQSRGR----HWKHLKQILQAENYQNYPPDEPNY 59
Y K+P+G R HW AE + NYP D P Y
Sbjct: 243 YNKHPEGSVNDRWGVPHW----DFKTAEYHVNYPGDLPGY 278
>pdb|1HL8|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
pdb|1HL8|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
pdb|1HL9|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With A Mechanism Based Inhibitor
pdb|1HL9|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With A Mechanism Based Inhibitor
Length = 449
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 24 YEKYPKGQSRGR----HWKHLKQILQAENYQNYPPDEPNY 59
Y K+P+G R HW AE + NYP D P Y
Sbjct: 243 YNKHPEGSVNDRWGVPHW----DFKTAEYHVNYPGDLPGY 278
>pdb|3HDX|A Chain A, Crystal Structure Of Susd Superfamily Protein
(Np_809182.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.50 A Resolution
Length = 478
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 83 PYYDPRTNLRYANAEVFKLVRSLPNEY 109
P D +T L YA AE+ + LP +Y
Sbjct: 148 PRTDAQTVLSYAKAELLTAIEDLPYQY 174
>pdb|2ZWY|A Chain A, Alpha-L-Fucosidase
pdb|2ZWY|B Chain B, Alpha-L-Fucosidase
pdb|2ZWZ|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
pdb|2ZWZ|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
pdb|2ZX5|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10
pdb|2ZX5|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10
pdb|2ZX6|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
pdb|2ZX6|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
pdb|2ZX7|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
pdb|2ZX7|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
pdb|2ZX8|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
pdb|2ZX8|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
pdb|2ZX9|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, B4
pdb|2ZX9|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, B4
pdb|2ZXA|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
pdb|2ZXA|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
pdb|2ZXB|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
pdb|2ZXB|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
pdb|2ZXD|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
pdb|2ZXD|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
Length = 455
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 24 YEKYPKGQSRGR----HWKHLKQILQAENYQNYPPDEPNY 59
Y K+P+G R HW AE + NYP D P Y
Sbjct: 243 YNKHPEGSVNDRWGVPHW----DFKTAEYHVNYPGDLPGY 278
>pdb|1ODU|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With Fucose
pdb|1ODU|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With Fucose
Length = 449
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 24 YEKYPKGQSRGR----HWKHLKQILQAENYQNYPPDEPNY 59
Y K+P+G R HW AE + NYP D P Y
Sbjct: 243 YNKHPEGSVNDRWGVPHW----DFKTAEYHVNYPGDLPGY 278
>pdb|3VQ1|C Chain C, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|D Chain D, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|C Chain C, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|D Chain D, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 144
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 67 SMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLVRSL 105
S PC R+ GF + PR NL+Y +F V S+
Sbjct: 31 SSEPCIRLRGTNGFVHVEFIPRGNLKYLYFNLFISVNSI 69
>pdb|2Z64|C Chain C, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 135
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 67 SMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLVRSL 105
S PC R+ GF + PR NL+Y +F V S+
Sbjct: 27 SSEPCIRLRGTNGFVHVEFIPRGNLKYLYFNLFISVNSI 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,836,459
Number of Sequences: 62578
Number of extensions: 146744
Number of successful extensions: 359
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 26
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)