BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033229
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BHA0|IN80C_MOUSE INO80 complex subunit C OS=Mus musculus GN=Ino80c PE=2 SV=1
Length = 191
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 59/91 (64%)
Query: 33 RGRHWKHLKQILQAENYQNYPPDEPNYVNIESPPSMHPCKRICDITGFEAPYYDPRTNLR 92
+ R WK+LKQIL AE + ++PNY +I++PPS P K+ DI+G A Y DP++ LR
Sbjct: 100 KNRTWKNLKQILAAERALPWQLNDPNYFSIDAPPSFKPAKKYSDISGLLANYTDPQSKLR 159
Query: 93 YANAEVFKLVRSLPNEYVQRYLALRNAAVVL 123
++ E F +R LP++ V YLALR A ++
Sbjct: 160 FSTVEEFSYIRRLPSDVVTGYLALRKATSIV 190
>sp|Q5BJY3|IN80C_RAT INO80 complex subunit C OS=Rattus norvegicus GN=Ino80c PE=2 SV=1
Length = 191
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 58/91 (63%)
Query: 33 RGRHWKHLKQILQAENYQNYPPDEPNYVNIESPPSMHPCKRICDITGFEAPYYDPRTNLR 92
+ R WK+LKQIL AE + ++PNY +I++PPS P K+ D++G A Y DP++ LR
Sbjct: 100 KNRTWKNLKQILAAERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLR 159
Query: 93 YANAEVFKLVRSLPNEYVQRYLALRNAAVVL 123
++ E F +R LP++ V YL LR A ++
Sbjct: 160 FSTVEEFSYIRRLPSDVVTGYLTLRKATSIV 190
>sp|Q6PI98|IN80C_HUMAN INO80 complex subunit C OS=Homo sapiens GN=INO80C PE=1 SV=1
Length = 192
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 59/91 (64%)
Query: 33 RGRHWKHLKQILQAENYQNYPPDEPNYVNIESPPSMHPCKRICDITGFEAPYYDPRTNLR 92
+ R WK+LKQIL +E + ++PNY +I++PPS P K+ D++G A Y DP++ LR
Sbjct: 101 KNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLR 160
Query: 93 YANAEVFKLVRSLPNEYVQRYLALRNAAVVL 123
++ E F +R LP++ V YLALR A ++
Sbjct: 161 FSTIEEFSYIRRLPSDVVTGYLALRKATSIV 191
>sp|Q9UTE8|IES6_SCHPO Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ies6 PE=3 SV=1
Length = 117
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 28 PKGQSRGRHWKHLKQILQAENYQNYPPDEPNYVNIESPPSMHPCKRICDITGFEAPYYDP 87
P +++ R ++L+QI+Q + QN P + +Y +IE+PPS+ P + CD+TG A Y DP
Sbjct: 22 PNYKAQPRRNRNLRQIIQNDPVQNEP-SKFSYSSIEAPPSVLPQPKYCDVTGLLAIYTDP 80
Query: 88 RTNLRYANAEVFKLVRSLPNEYVQRYLALRNAAVVLK 124
+T LRY N E++ L+R LP+ Q YL LR++ VVLK
Sbjct: 81 KTRLRYHNKEIYGLIRELPSGADQEYLKLRSSDVVLK 117
>sp|P32617|IES6_YEAST Chromatin-remodeling complex subunit IES6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IES6 PE=1
SV=1
Length = 166
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 58 NYVNIESPPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKL-VRSLPNEYVQRYLAL 116
Y ++E+PPS+ P K+ CD+TG + Y P N+RY NAE+++L V+ + Q YL L
Sbjct: 99 TYFSVEAPPSIRPAKKYCDVTGLKGFYKSPTNNIRYHNAEIYQLIVKPMAPGVDQEYLKL 158
Query: 117 RNAAVVLK 124
R A VLK
Sbjct: 159 RGANFVLK 166
>sp|Q54NW0|ZNHI1_DICDI Zinc finger HIT domain-containing protein 1 homolog
OS=Dictyostelium discoideum GN=znhit1 PE=3 SV=1
Length = 177
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 10 LVLPTYMSFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYQNYPPDEPNYVNIESPPSMH 69
+V T ++ KR+ + + K + + + + +L+ + +P P Y++++S PS+
Sbjct: 75 IVYTTPVNKKRLFIAREKKKNEKKSMNL-NFNDVLEKSYLETFPDHVPTYISVQSKPSIF 133
Query: 70 PCKRICDITGFEAPYYDPRTNLRYANAEVF 99
P + C I G+ Y + + RY + + F
Sbjct: 134 PPRHFCSICGYIGAYTCKQCSSRYCSIKCF 163
>sp|Q62481|VPS72_MOUSE Vacuolar protein sorting-associated protein 72 homolog OS=Mus
musculus GN=Vps72 PE=2 SV=2
Length = 368
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 65 PPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYV 110
PP + P + +C +T A Y DP T++ YA A FK++R +Y+
Sbjct: 287 PPKV-PVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYI 331
>sp|Q15906|VPS72_HUMAN Vacuolar protein sorting-associated protein 72 homolog OS=Homo
sapiens GN=VPS72 PE=1 SV=1
Length = 364
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 65 PPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYV 110
PP + P + +C +T A Y DP T++ YA A FK++R +Y+
Sbjct: 283 PPKV-PVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYI 327
>sp|Q5R5V9|VPS72_PONAB Vacuolar protein sorting-associated protein 72 homolog OS=Pongo
abelii GN=VPS72 PE=2 SV=1
Length = 364
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 65 PPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYV 110
PP + P + +C +T A Y DP T++ YA A FK++R +Y+
Sbjct: 283 PPKV-PVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYI 327
>sp|Q5E9F6|VPS72_BOVIN Vacuolar protein sorting-associated protein 72 homolog OS=Bos
taurus GN=VPS72 PE=2 SV=1
Length = 364
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 70 PCKRICDITGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYV 110
P + +C +T A Y DP T++ YA A FK++R +Y+
Sbjct: 287 PVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYI 327
>sp|Q9P790|VPS72_SCHPO SWR complex protein 2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=swc2 PE=1 SV=1
Length = 316
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 45 QAENYQNYPPDEPNYVNIESPPSMHPCKRI--CDITGFEAPYYDPRTNLRYANAEVFKLV 102
+A NY P + P + +PP P R C ITG A Y DP T L +N + F+ V
Sbjct: 241 EASNYYVAPLEHP--LCHSAPPLQMPQHRAVECVITGKPAIYLDPVTQLPISNVQAFQQV 298
Query: 103 RSLPNEYVQRY 113
R + Y QRY
Sbjct: 299 REV---YNQRY 306
>sp|P80457|XDH_BOVIN Xanthine dehydrogenase/oxidase OS=Bos taurus GN=XDH PE=1 SV=4
Length = 1332
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
Query: 13 PTYMS----FKR-----IQMYEKYPKGQSR----GRHWKHLKQILQAENYQNYPPDEPNY 59
PTY S F++ IQ++++ P GQS+ GR HL +QA Y D P Y
Sbjct: 540 PTYTSATLLFQKDPPANIQLFQEVPNGQSKEDTVGRPLPHLAAAMQASGEAVYCDDIPRY 599
Query: 60 VN 61
N
Sbjct: 600 EN 601
>sp|Q03388|VPS72_YEAST Vacuolar protein sorting-associated protein 72 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS72 PE=1
SV=2
Length = 795
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 72 KRICDITGFEAPYYDPRTNLRYANAEVFKLVRSL 105
++ C IT E Y+DPRT + Y++ E +K+++ +
Sbjct: 707 RKKCLITNKECQYFDPRTGVPYSDVEAYKIIQRI 740
>sp|Q6GNJ8|VPS72_XENLA Vacuolar protein sorting-associated protein 72 homolog OS=Xenopus
laevis GN=vps72 PE=2 SV=1
Length = 353
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 74 ICDITGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYVQRYLALRNAAVV 122
+C +T A Y DP T++ Y N++ FK++R +Y+ + L NAA+
Sbjct: 279 VCPVTHKPALYRDPITDIPYYNSKAFKIIRDAYKKYITTH-GLPNAAMA 326
>sp|Q00519|XDH_MOUSE Xanthine dehydrogenase/oxidase OS=Mus musculus GN=Xdh PE=1 SV=5
Length = 1335
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 21 IQMYEKYPKGQSR----GRHWKHLKQILQAENYQNYPPDEPNYVN 61
+Q++++ PKGQS GR HL +QA Y D P Y N
Sbjct: 560 VQLFQEVPKGQSEEDMVGRPMPHLAADMQASGEAVYCDDIPRYEN 604
>sp|O35206|COFA1_MOUSE Collagen alpha-1(XV) chain OS=Mus musculus GN=Col15a1 PE=1 SV=2
Length = 1367
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 25 EKYPKGQSRG-RHWKHLKQILQAENYQNYPPDEPNYVNIESPPSMHPCKRICDITGFEAP 83
E G++ G + + +I++A Y PP E + I PP+ +++G P
Sbjct: 239 ESSASGEASGFQEMDEVAEIMEAVTYTQAPPKESHVDPISVPPTSSSPAEDSELSGEPVP 298
Query: 84 YYDPRTNL 91
P TNL
Sbjct: 299 EGTPETNL 306
>sp|Q4WXV2|CLU_ASPFU Clustered mitochondria protein homolog OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=clu1 PE=3 SV=1
Length = 1310
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 41 KQILQAENYQNYPPDEPNYVNIESPPSMHPCKRICDITGFEAPYY----DPRTNLRYANA 96
K +L +QN P+ P + +PPS +P DIT + Y D LR N
Sbjct: 343 KDLLTTFPFQNAIPNSPW---LVTPPSSNPNSHQADITRSQESYLVSGVDNAETLRDWNE 399
Query: 97 EVFKLVRSLPNEYVQ 111
E F+ R LP E VQ
Sbjct: 400 E-FQTTRELPRETVQ 413
>sp|B0XXS1|CLU_ASPFC Clustered mitochondria protein homolog OS=Neosartorya fumigata
(strain CEA10 / CBS 144.89 / FGSC A1163) GN=clu1 PE=3
SV=1
Length = 1310
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 41 KQILQAENYQNYPPDEPNYVNIESPPSMHPCKRICDITGFEAPYY----DPRTNLRYANA 96
K +L +QN P+ P + +PPS +P DIT + Y D LR N
Sbjct: 343 KDLLTTFPFQNAIPNSPW---LVTPPSSNPNSHQADITRSQESYLVSGVDNAETLRDWNE 399
Query: 97 EVFKLVRSLPNEYVQ 111
E F+ R LP E VQ
Sbjct: 400 E-FQTTRELPRETVQ 413
>sp|A1D6Y7|CLU_NEOFI Clustered mitochondria protein homolog OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=clu1 PE=3 SV=1
Length = 1317
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 41 KQILQAENYQNYPPDEPNYVNIESPPSMHPCKRICDITGFEAPYY----DPRTNLRYANA 96
K +L +QN P+ P + +PPS +P DIT + Y D LR N
Sbjct: 350 KDLLTTFPFQNAIPNSPW---LVTPPSSNPNSHQADITRSQESYLVSGVDNAETLRDWNE 406
Query: 97 EVFKLVRSLPNEYVQ 111
E F+ R LP E VQ
Sbjct: 407 E-FQTTRELPRETVQ 420
>sp|P47989|XDH_HUMAN Xanthine dehydrogenase/oxidase OS=Homo sapiens GN=XDH PE=1 SV=4
Length = 1333
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 21 IQMYEKYPKGQSR----GRHWKHLKQILQAENYQNYPPDEPNYVN 61
+Q++++ PKGQS GR HL +QA Y D P Y N
Sbjct: 558 VQLFQEVPKGQSEEDMVGRPLPHLAADMQASGEAVYCDDIPRYEN 602
>sp|Q0ATA0|TYPH_MARMM Putative thymidine phosphorylase OS=Maricaulis maris (strain MCS10)
GN=Mmar10_0191 PE=3 SV=1
Length = 519
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 11 VLPTYMSFKRIQMYEKYPKGQS---------RGRHWKHLKQILQAENYQNYPPDEPNYVN 61
V T ++ + ++M + P G+ GR W+ + I +A+ PP P+Y
Sbjct: 376 VQATLLAGELLEMGQAAPAGRGAELATELLVNGRAWRAFEAICEAQGGFREPPTAPHYQV 435
Query: 62 IESP 65
I+SP
Sbjct: 436 IQSP 439
>sp|Q9MYW6|XDH_FELCA Xanthine dehydrogenase/oxidase OS=Felis catus GN=XDH PE=2 SV=3
Length = 1331
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 21 IQMYEKYPKGQSR----GRHWKHLKQILQAENYQNYPPDEPNYVN 61
+Q++++ PKGQ GR HL +QA Y D P Y N
Sbjct: 556 VQLFQEVPKGQCEEDMVGRPLPHLAAAMQASGEAVYCDDIPRYEN 600
>sp|Q8R331|ZNHI1_MOUSE Zinc finger HIT domain-containing protein 1 OS=Mus musculus
GN=Znhit1 PE=2 SV=1
Length = 154
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 35 RHWKHLKQILQAENYQNYPPDEPNYVNIESPPSMHPCKRICDITGFEAPYYDPRTNLRYA 94
R K+ + +L+ +N + PNY+ + P P + C + GF +PY RY
Sbjct: 79 RFRKNFQALLEEQNLSAS--EGPNYLTACAGPPSRPQRPFCAVCGFPSPYTCVSCGARYC 136
Query: 95 NAEVF 99
Sbjct: 137 TVRCL 141
>sp|C0LGL4|Y2289_ARATH Probable LRR receptor-like serine/threonine-protein kinase
At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1
Length = 880
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Query: 50 QNYPPDEPNYVNIESPPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKL 101
Q PPD+ +++++ C + E+PY DPRT L +++ F L
Sbjct: 23 QAQPPDQRGFISLD-----------CGLPVNESPYTDPRTGLTFSSDADFIL 63
>sp|Q7NC65|GLPK_MYCGA Glycerol kinase OS=Mycoplasma gallisepticum (strain R(low / passage
15 / clone 2)) GN=glpK PE=3 SV=2
Length = 508
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 59 YVNIESPPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYV 110
Y N+ S H + TG APY+D Y+ +F L R E++
Sbjct: 335 YANLASKQDTHQVYLVPSFTGLGAPYWD-----SYSRGAIFGLERGTKKEHI 381
>sp|O43257|ZNHI1_HUMAN Zinc finger HIT domain-containing protein 1 OS=Homo sapiens
GN=ZNHIT1 PE=1 SV=1
Length = 154
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 35 RHWKHLKQILQAENYQNYPPDEPNYVNIESPPSMHPCKRICDITGFEAPYYDPRTNLRYA 94
R K+ + +L+ +N + PNY+ + P P + C + GF +PY RY
Sbjct: 79 RFRKNFQALLEEQNLSVA--EGPNYLTACAGPPSRPQRPFCAVCGFPSPYTCVSCGARYC 136
Query: 95 NAEVF 99
Sbjct: 137 TVRCL 141
>sp|Q24JY4|ZNHI1_BOVIN Zinc finger HIT domain-containing protein 1 OS=Bos taurus GN=ZNHIT1
PE=2 SV=1
Length = 154
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 35 RHWKHLKQILQAENYQNYPPDEPNYVNIESPPSMHPCKRICDITGFEAPYYDPRTNLRYA 94
R K+ + +L+ +N + PNY+ + P P + C + GF +PY RY
Sbjct: 79 RFRKNFQALLEEQNLSVA--EGPNYLTACAGPPSRPQRPFCAVCGFPSPYTCVSCGARYC 136
Query: 95 NAEVF 99
Sbjct: 137 TVRCL 141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,088,171
Number of Sequences: 539616
Number of extensions: 1800992
Number of successful extensions: 3782
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3763
Number of HSP's gapped (non-prelim): 30
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)