Query 033229
Match_columns 124
No_of_seqs 136 out of 227
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqq_A Zinc finger HIT domain- 98.3 2.7E-07 9.4E-12 59.5 3.3 38 66-103 6-43 (56)
2 1x4s_A Protein FON, zinc finge 98.3 3.5E-07 1.2E-11 59.7 2.4 38 65-102 4-45 (59)
3 3j20_Y 30S ribosomal protein S 69.0 2 6.9E-05 26.2 1.4 38 57-95 5-49 (50)
4 2yqp_A Probable ATP-dependent 68.6 2.7 9.3E-05 27.1 2.0 32 70-101 17-48 (60)
5 2dj8_A Protein CBFA2T1; zinc f 62.7 6.2 0.00021 24.1 2.8 31 70-100 13-44 (60)
6 1lv3_A Hypothetical protein YA 62.0 4.7 0.00016 26.4 2.3 32 70-101 7-38 (68)
7 2kn9_A Rubredoxin; metalloprot 60.7 6.7 0.00023 26.4 2.9 13 80-92 57-69 (81)
8 2pzo_E CAP-Gly domain-containi 59.9 1.6 5.6E-05 26.4 -0.3 18 69-86 17-34 (42)
9 4rxn_A Rubredoxin; electron tr 58.0 5.2 0.00018 24.9 1.8 13 80-92 33-45 (54)
10 1yuz_A Nigerythrin; rubrythrin 56.3 4.1 0.00014 30.9 1.4 22 71-92 170-195 (202)
11 2hqh_E Restin; beta/BETA struc 55.8 2.1 7.1E-05 23.5 -0.3 16 71-86 2-17 (26)
12 2od1_A Protein CBFA2T1; zinc f 49.6 9 0.00031 23.4 1.9 30 71-100 12-42 (60)
13 2v3b_B Rubredoxin 2, rubredoxi 47.7 8.8 0.0003 23.8 1.7 13 80-92 33-45 (55)
14 2odd_A Protein CBFA2T1; MYND z 46.9 9.3 0.00032 23.4 1.7 31 70-100 15-46 (64)
15 1dx8_A Rubredoxin; electron tr 45.5 10 0.00036 24.6 1.8 20 80-102 37-56 (70)
16 2d8q_A BLU protein, zinc finge 42.3 25 0.00084 22.3 3.2 32 69-100 12-44 (70)
17 1znf_A 31ST zinc finger from X 41.6 21 0.00073 16.1 2.3 19 83-101 1-19 (27)
18 3e2u_E CAP-Gly domain-containi 41.6 5.1 0.00017 24.2 -0.2 17 70-86 18-34 (42)
19 1e8j_A Rubredoxin; iron-sulfur 39.8 16 0.00055 22.3 1.9 13 80-92 33-45 (52)
20 3pwf_A Rubrerythrin; non heme 39.1 11 0.00039 27.7 1.4 23 70-92 136-162 (170)
21 1s24_A Rubredoxin 2; electron 39.0 14 0.00047 25.1 1.7 13 80-92 65-77 (87)
22 1klr_A Zinc finger Y-chromosom 38.4 20 0.00069 16.4 1.9 19 83-101 2-20 (30)
23 1p7a_A BF3, BKLF, kruppel-like 38.0 27 0.00091 17.2 2.4 20 82-101 10-29 (37)
24 1ard_A Yeast transcription fac 36.6 29 0.00098 15.8 2.3 19 83-101 2-20 (29)
25 2kvh_A Zinc finger and BTB dom 36.0 19 0.00064 16.5 1.5 19 83-101 3-21 (27)
26 4ayb_B DNA-directed RNA polyme 34.8 12 0.00042 35.0 1.2 33 73-105 1062-1110(1131)
27 2jvx_A NF-kappa-B essential mo 34.7 21 0.00072 19.5 1.7 21 81-101 1-21 (28)
28 2m0e_A Zinc finger and BTB dom 33.7 21 0.00074 16.1 1.5 18 83-100 2-19 (29)
29 2e72_A POGO transposable eleme 32.9 32 0.0011 21.3 2.5 19 82-100 11-29 (49)
30 1paa_A Yeast transcription fac 32.4 28 0.00095 16.0 1.8 19 83-101 2-20 (30)
31 1rik_A E6APC1 peptide; E6-bind 32.2 18 0.0006 16.7 1.0 19 83-101 2-20 (29)
32 2kvf_A Zinc finger and BTB dom 30.8 26 0.00088 16.0 1.5 19 83-101 3-21 (28)
33 1rim_A E6APC2 peptide; E6-bind 30.3 42 0.0014 16.4 2.4 19 83-101 2-20 (33)
34 2jw6_A Deformed epidermal auto 29.4 31 0.001 19.9 2.0 29 72-100 9-38 (52)
35 2l92_A Histone family protein 29.2 19 0.00066 22.3 1.0 13 79-91 2-14 (50)
36 2elr_A Zinc finger protein 406 27.7 46 0.0016 16.1 2.3 20 82-101 8-27 (36)
37 2lvu_A Zinc finger and BTB dom 32.6 14 0.00047 16.9 0.0 17 83-99 2-18 (26)
38 2kvg_A Zinc finger and BTB dom 26.2 20 0.00069 16.6 0.6 18 83-100 3-20 (27)
39 2m0f_A Zinc finger and BTB dom 26.2 35 0.0012 15.3 1.5 19 83-101 2-20 (29)
40 2elx_A Zinc finger protein 406 26.0 35 0.0012 16.4 1.6 19 83-101 7-25 (35)
41 3qww_A SET and MYND domain-con 25.9 32 0.0011 28.3 2.1 30 71-100 48-80 (433)
42 1vd4_A Transcription initiatio 25.8 32 0.0011 19.8 1.6 14 82-95 38-51 (62)
43 3a43_A HYPD, hydrogenase nicke 25.7 29 0.00098 24.7 1.6 24 69-92 67-116 (139)
44 2m0d_A Zinc finger and BTB dom 25.4 37 0.0012 15.4 1.5 19 83-101 3-21 (30)
45 1srk_A Zinc finger protein ZFP 25.1 37 0.0013 16.4 1.6 20 82-101 6-25 (35)
46 1h7b_A Anaerobic ribonucleotid 25.0 16 0.00056 32.2 0.2 45 36-92 516-567 (605)
47 1l1o_C Replication protein A 7 24.3 31 0.0011 25.2 1.6 57 34-93 4-72 (181)
48 2elt_A Zinc finger protein 406 23.7 39 0.0013 16.4 1.5 18 83-100 9-26 (36)
49 2yte_A Zinc finger protein 473 23.5 60 0.002 16.3 2.3 20 82-101 9-28 (42)
50 2els_A Zinc finger protein 406 23.4 41 0.0014 16.4 1.5 19 83-101 9-27 (36)
51 2eos_A B-cell lymphoma 6 prote 23.4 65 0.0022 16.3 2.5 20 82-101 10-29 (42)
52 1vq8_1 50S ribosomal protein L 23.3 18 0.00062 23.0 0.1 18 66-83 26-44 (57)
53 2yti_A Zinc finger protein 347 23.2 62 0.0021 16.7 2.4 20 82-101 11-30 (46)
54 2eon_A ZFP-95, zinc finger pro 22.8 61 0.0021 16.9 2.3 20 82-101 11-30 (46)
55 2ytb_A Zinc finger protein 32; 22.6 63 0.0021 16.2 2.3 20 82-101 10-29 (42)
56 2elq_A Zinc finger protein 406 22.4 42 0.0014 16.4 1.5 19 83-101 9-27 (36)
57 2enf_A Zinc finger protein 347 22.4 64 0.0022 16.7 2.3 20 82-101 11-30 (46)
58 2elo_A Zinc finger protein 406 22.2 31 0.0011 17.0 0.9 20 82-101 8-27 (37)
59 3j21_e 50S ribosomal protein L 22.1 25 0.00086 22.7 0.6 19 65-83 25-44 (62)
60 3qwp_A SET and MYND domain-con 22.0 43 0.0015 27.3 2.1 30 71-100 46-78 (429)
61 2elv_A Zinc finger protein 406 22.0 46 0.0016 16.2 1.6 19 83-101 9-27 (36)
62 2en7_A Zinc finger protein 268 21.9 70 0.0024 16.2 2.4 20 82-101 11-30 (44)
63 2elm_A Zinc finger protein 406 21.8 40 0.0014 16.9 1.3 20 82-101 8-27 (37)
64 2yth_A Zinc finger protein 224 21.6 73 0.0025 16.5 2.5 20 82-101 11-30 (46)
65 2emg_A Zinc finger protein 484 21.0 70 0.0024 16.5 2.3 20 82-101 11-30 (46)
66 1sp2_A SP1F2; zinc finger, tra 20.9 78 0.0027 14.7 2.3 19 83-101 2-22 (31)
67 2k4x_A 30S ribosomal protein S 20.6 71 0.0024 19.5 2.5 35 58-93 5-46 (55)
68 1lko_A Rubrerythrin all-iron(I 20.5 37 0.0013 25.1 1.3 21 72-92 155-180 (191)
No 1
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=2.7e-07 Score=59.54 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=33.3
Q ss_pred CCCCCCcccccccCCCcccCCCCCCCCccCHHHHHHhh
Q 033229 66 PSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLVR 103 (124)
Q Consensus 66 pS~~P~kkyCdITGl~A~Y~dP~tglrY~~~~~y~~ir 103 (124)
.++.-...+|.|||.+++|+||+|++|||+.++|+.-+
T Consensus 6 ~~~~~~~~~C~vC~~~~kY~CPrC~~~yCSl~C~k~Hk 43 (56)
T 2yqq_A 6 SGLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHK 43 (56)
T ss_dssp CCCCCCCCCCTTTCSCCSEECTTTCCEESSHHHHHHHH
T ss_pred cccCCCCCccCcCcCCCeeeCCCCCCCeeCHHHHHHHH
Confidence 35666677999999999999999999999999998754
No 2
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=98.26 E-value=3.5e-07 Score=59.71 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=32.9
Q ss_pred CCCCCCCcccccccC----CCcccCCCCCCCCccCHHHHHHh
Q 033229 65 PPSMHPCKRICDITG----FEAPYYDPRTNLRYANAEVFKLV 102 (124)
Q Consensus 65 ppS~~P~kkyCdITG----l~A~Y~dP~tglrY~~~~~y~~i 102 (124)
.+|-.++...|.||+ .+|+|+||+|++|||+..+|+.=
T Consensus 4 ~~s~m~~~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~H 45 (59)
T 1x4s_A 4 GSSGMEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45 (59)
T ss_dssp CCSSCCCCEEECSSCTTCCEEECEECTTTCCEESSHHHHHHH
T ss_pred CCCCCCCCCcCcCCCCCcCCCccccCcCCCCCccChHHHHHH
Confidence 455566678999999 59999999999999999999853
No 3
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=68.96 E-value=2 Score=26.22 Aligned_cols=38 Identities=8% Similarity=0.005 Sum_probs=27.9
Q ss_pred CCceeeeCCCCCCCCcccccccCC---C----cccCCCCCCCCccC
Q 033229 57 PNYVNIESPPSMHPCKRICDITGF---E----APYYDPRTNLRYAN 95 (124)
Q Consensus 57 ptY~si~appS~~P~kkyCdITGl---~----A~Y~dP~tglrY~~ 95 (124)
..|..++ --.+...+++|+-||- - .++.|+.||.-|.+
T Consensus 5 l~~y~v~-~~kv~~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 5 WKLYEIK-DGKVIRKNKFCPRCGPGVFMADHGDRWACGKCGYTEWK 49 (50)
T ss_dssp CCCCEEC-SSCEECSSEECSSSCSSCEEEECSSEEECSSSCCEEEC
T ss_pred eeEEEEE-CCEEEEecccCCCCCCceEEecCCCeEECCCCCCEEEC
Confidence 4566776 3356678899999985 2 38899999987754
No 4
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.55 E-value=2.7 Score=27.14 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=28.2
Q ss_pred CCcccccccCCCcccCCCCCCCCccCHHHHHH
Q 033229 70 PCKRICDITGFEAPYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 70 P~kkyCdITGl~A~Y~dP~tglrY~~~~~y~~ 101 (124)
|.-..|.|||-.+-|.|-.|.-+-|+.||=..
T Consensus 17 pgePvCvvCGryGeYICd~Td~DVCSlECK~~ 48 (60)
T 2yqp_A 17 PGEPICVVCGRYGEYICDKTDEDVCSLECKAK 48 (60)
T ss_dssp TTSCCCSSSSSCCSEECSSSCCEESSHHHHHH
T ss_pred CCCceEEEecCccceeecCCCcchhhHHHHHH
Confidence 44456999999999999999999999999765
No 5
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=62.70 E-value=6.2 Score=24.12 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=25.5
Q ss_pred CCcccccccCCCcccCCCCCCC-CccCHHHHH
Q 033229 70 PCKRICDITGFEAPYYDPRTNL-RYANAEVFK 100 (124)
Q Consensus 70 P~kkyCdITGl~A~Y~dP~tgl-rY~~~~~y~ 100 (124)
+....|..||.++..+|..++. +||+.++-.
T Consensus 13 ~~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~ 44 (60)
T 2dj8_A 13 DSSESCWNCGRKASETCSGCNTARYCGSFCQH 44 (60)
T ss_dssp CCSCCCSSSCSCCCEECTTTSCCEESSHHHHH
T ss_pred CCCcccccCCCCCcccCCCCCCEeeeCHHHHH
Confidence 4567899999999999999987 588877654
No 6
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=62.04 E-value=4.7 Score=26.44 Aligned_cols=32 Identities=6% Similarity=0.044 Sum_probs=25.9
Q ss_pred CCcccccccCCCcccCCCCCCCCccCHHHHHH
Q 033229 70 PCKRICDITGFEAPYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 70 P~kkyCdITGl~A~Y~dP~tglrY~~~~~y~~ 101 (124)
++.+.|.|||-+..|..-.---+||+.+|=.+
T Consensus 7 ~~~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~i 38 (68)
T 1lv3_A 7 TITVNCPTCGKTVVWGEISPFRPFCSKRCQLI 38 (68)
T ss_dssp CCEEECTTTCCEEECSSSSSCCSSSSHHHHHH
T ss_pred CCcCcCCCCCCcccccccCCCCcccCHHHHhh
Confidence 34568999999999886666779999998654
No 7
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=60.68 E-value=6.7 Score=26.41 Aligned_cols=13 Identities=8% Similarity=0.102 Sum_probs=9.1
Q ss_pred CCcccCCCCCCCC
Q 033229 80 FEAPYYDPRTNLR 92 (124)
Q Consensus 80 l~A~Y~dP~tglr 92 (124)
+|..|+||.||..
T Consensus 57 lPddW~CPvCga~ 69 (81)
T 2kn9_A 57 IPDDWSCPDCGAA 69 (81)
T ss_dssp SCTTCCCTTTCCC
T ss_pred CCCCCcCCCCCCC
Confidence 4556788888864
No 8
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=59.91 E-value=1.6 Score=26.40 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=12.0
Q ss_pred CCCcccccccCCCcccCC
Q 033229 69 HPCKRICDITGFEAPYYD 86 (124)
Q Consensus 69 ~P~kkyCdITGl~A~Y~d 86 (124)
...|.||+||...+..+.
T Consensus 17 ~~eRpYCd~CEvFGH~t~ 34 (42)
T 2pzo_E 17 GEERPYCEICEMFGHWAT 34 (42)
T ss_dssp ----CEETTTTEESSCGG
T ss_pred ccCCcccccccccCcccc
Confidence 467899999999887763
No 9
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=57.97 E-value=5.2 Score=24.91 Aligned_cols=13 Identities=8% Similarity=0.140 Sum_probs=10.1
Q ss_pred CCcccCCCCCCCC
Q 033229 80 FEAPYYDPRTNLR 92 (124)
Q Consensus 80 l~A~Y~dP~tglr 92 (124)
||..|+||.||..
T Consensus 33 lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 33 IPDDWVCPLCGVG 45 (54)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 4677888888875
No 10
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=56.27 E-value=4.1 Score=30.87 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=17.4
Q ss_pred CcccccccCCC----cccCCCCCCCC
Q 033229 71 CKRICDITGFE----APYYDPRTNLR 92 (124)
Q Consensus 71 ~kkyCdITGl~----A~Y~dP~tglr 92 (124)
.+-.|.+||+. +++.||.||.+
T Consensus 170 ~~~~C~~CG~i~~g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHKGEDFEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCB
T ss_pred cEEEECCCCCEEcCcCCCCCCCCCCC
Confidence 45579999986 56899999875
No 11
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=55.82 E-value=2.1 Score=23.52 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=11.7
Q ss_pred CcccccccCCCcccCC
Q 033229 71 CKRICDITGFEAPYYD 86 (124)
Q Consensus 71 ~kkyCdITGl~A~Y~d 86 (124)
.|.||++|...+..++
T Consensus 2 ~RpYCe~CE~FGH~t~ 17 (26)
T 2hqh_E 2 SRPYCEICEMFGHWAT 17 (26)
T ss_dssp --CEETTTTEESSCGG
T ss_pred CCccchHHHHhCcccc
Confidence 4789999998887663
No 12
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=49.55 E-value=9 Score=23.40 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=24.5
Q ss_pred CcccccccCCCcccCCCCCCC-CccCHHHHH
Q 033229 71 CKRICDITGFEAPYYDPRTNL-RYANAEVFK 100 (124)
Q Consensus 71 ~kkyCdITGl~A~Y~dP~tgl-rY~~~~~y~ 100 (124)
....|..||.++..+|..++. +||+.++-.
T Consensus 12 ~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~ 42 (60)
T 2od1_A 12 SSESCWNCGRKASETCSGCNTARYCGSFCQH 42 (60)
T ss_dssp CSSCCTTTSSCCCEECTTTSCCEESSHHHHH
T ss_pred CCCccccCCCcccccCCCCCCeeecCHHHHH
Confidence 346899999999999999985 588877744
No 13
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=47.66 E-value=8.8 Score=23.76 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=9.3
Q ss_pred CCcccCCCCCCCC
Q 033229 80 FEAPYYDPRTNLR 92 (124)
Q Consensus 80 l~A~Y~dP~tglr 92 (124)
+|..|+||.||..
T Consensus 33 lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 33 IPADWVCPDCGVG 45 (55)
T ss_dssp SCTTCCCTTTCCC
T ss_pred CCCCCcCCCCCCC
Confidence 5677778877764
No 14
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=46.91 E-value=9.3 Score=23.40 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=24.8
Q ss_pred CCcccccccCCCcccCCCCCCC-CccCHHHHH
Q 033229 70 PCKRICDITGFEAPYYDPRTNL-RYANAEVFK 100 (124)
Q Consensus 70 P~kkyCdITGl~A~Y~dP~tgl-rY~~~~~y~ 100 (124)
|....|..||.++..+|..++. +||+.++-.
T Consensus 15 ~~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~ 46 (64)
T 2odd_A 15 DSSESCWNCGRKASETCSGCNTARYCGSFCQH 46 (64)
T ss_dssp CCSSSCTTTSSCCCEEETTTSCCEESSHHHHH
T ss_pred CCCCcCccccCCCcccCCCCCChhhCCHHHHH
Confidence 3567899999999999999976 488777654
No 15
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=45.50 E-value=10 Score=24.56 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=11.9
Q ss_pred CCcccCCCCCCCCccCHHHHHHh
Q 033229 80 FEAPYYDPRTNLRYANAEVFKLV 102 (124)
Q Consensus 80 l~A~Y~dP~tglrY~~~~~y~~i 102 (124)
+|..|+||.||.. .+.|..|
T Consensus 37 lPddw~CP~Cga~---K~~F~~~ 56 (70)
T 1dx8_A 37 LSDSFMCPACRSP---KNQFKSI 56 (70)
T ss_dssp SCTTCBCTTTCCB---GGGEEEC
T ss_pred CCCCCcCCCCCCC---HHHceEc
Confidence 4666777877764 4444443
No 16
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=42.33 E-value=25 Score=22.31 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=25.8
Q ss_pred CCCcccccccCCCcccCCCCCCC-CccCHHHHH
Q 033229 69 HPCKRICDITGFEAPYYDPRTNL-RYANAEVFK 100 (124)
Q Consensus 69 ~P~kkyCdITGl~A~Y~dP~tgl-rY~~~~~y~ 100 (124)
.+....|..||-++.-+|-.|+. +||+.++-.
T Consensus 12 ~~~~~~C~~C~~~~~~~Cs~Ck~v~YCs~eCQ~ 44 (70)
T 2d8q_A 12 APERPRCAYCSAEASKRCSRCQNEWYCCRECQV 44 (70)
T ss_dssp CCCCCBCSSSCCBCCCBCTTTSCCBCSCHHHHH
T ss_pred cCCCCcCCCCCCcccccCCCCCCEeeCCHHHhH
Confidence 45567999999999999999985 488877654
No 17
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=41.63 E-value=21 Score=16.11 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=14.5
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
+|.|+.||-.|.+...+..
T Consensus 1 ~~~C~~C~k~f~~~~~l~~ 19 (27)
T 1znf_A 1 XYKCGLCERSFVEKSALSR 19 (27)
T ss_dssp -CBCSSSCCBCSSHHHHHH
T ss_pred CccCCCCCCcCCCHHHHHH
Confidence 4788899999988776654
No 18
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=41.60 E-value=5.1 Score=24.21 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=12.9
Q ss_pred CCcccccccCCCcccCC
Q 033229 70 PCKRICDITGFEAPYYD 86 (124)
Q Consensus 70 P~kkyCdITGl~A~Y~d 86 (124)
..|+||++|-..+..++
T Consensus 18 ~eRpYCe~CEVFGH~t~ 34 (42)
T 3e2u_E 18 EERPYCEICEMFGHWAT 34 (42)
T ss_dssp --CCEETTTTEESSCGG
T ss_pred ccCcccccceecccccc
Confidence 45899999998887764
No 19
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=39.80 E-value=16 Score=22.30 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=8.0
Q ss_pred CCcccCCCCCCCC
Q 033229 80 FEAPYYDPRTNLR 92 (124)
Q Consensus 80 l~A~Y~dP~tglr 92 (124)
||..|+||.||..
T Consensus 33 lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 33 LPDDWACPVCGAS 45 (52)
T ss_dssp SCTTCCCSSSCCC
T ss_pred CCCCCcCCCCCCc
Confidence 4566667776653
No 20
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=39.11 E-value=11 Score=27.74 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=16.0
Q ss_pred CCcccccccCCC----cccCCCCCCCC
Q 033229 70 PCKRICDITGFE----APYYDPRTNLR 92 (124)
Q Consensus 70 P~kkyCdITGl~----A~Y~dP~tglr 92 (124)
+..-.|.+||+. ++-.||.||.+
T Consensus 136 ~~~~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCB
T ss_pred CCeeEeCCCCCeeCCCCCCCCCCCCCC
Confidence 344459999984 45688888854
No 21
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=38.96 E-value=14 Score=25.14 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=9.2
Q ss_pred CCcccCCCCCCCC
Q 033229 80 FEAPYYDPRTNLR 92 (124)
Q Consensus 80 l~A~Y~dP~tglr 92 (124)
+|..|+||.||..
T Consensus 65 lPddW~CPvCga~ 77 (87)
T 1s24_A 65 IPDDWCCPDCGAT 77 (87)
T ss_dssp CCTTCCCSSSCCC
T ss_pred CCCCCCCCCCCCC
Confidence 4566788888863
No 22
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=38.36 E-value=20 Score=16.37 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=14.6
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
.|.|+.||-.|.+...+..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~ 20 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLKT 20 (30)
T ss_dssp CCCCSSSSCCCSCSHHHHH
T ss_pred CccCCCCCCccCCHHHHHH
Confidence 4888999999988766543
No 23
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=38.03 E-value=27 Score=17.24 Aligned_cols=20 Identities=15% Similarity=0.466 Sum_probs=15.9
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-+|.|+.|+-.|.....+..
T Consensus 10 k~~~C~~C~k~f~~~~~l~~ 29 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDHLAL 29 (37)
T ss_dssp SSBCCTTTCCCBSSHHHHHH
T ss_pred CCccCCCCCcccCcHHHHHH
Confidence 36899999999998776654
No 24
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=36.63 E-value=29 Score=15.76 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=14.7
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
+|.|+.||-.|.....+..
T Consensus 2 ~~~C~~C~~~f~~~~~l~~ 20 (29)
T 1ard_A 2 SFVCEVCTRAFARQEHLKR 20 (29)
T ss_dssp CCBCTTTCCBCSSHHHHHH
T ss_pred CeECCCCCcccCCHHHHHH
Confidence 4888899999988776554
No 25
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=36.00 E-value=19 Score=16.55 Aligned_cols=19 Identities=11% Similarity=0.086 Sum_probs=14.7
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
+|.|+.||-.|.+...+..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~ 21 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTK 21 (27)
T ss_dssp CEECSSSSCEESSHHHHHH
T ss_pred CccCCCcChhhCCHHHHHH
Confidence 5888899999888766543
No 26
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=34.84 E-value=12 Score=34.98 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=22.9
Q ss_pred ccccccCCCcccC-------CCCCC---------CCccCHHHHHHhhcC
Q 033229 73 RICDITGFEAPYY-------DPRTN---------LRYANAEVFKLVRSL 105 (124)
Q Consensus 73 kyCdITGl~A~Y~-------dP~tg---------lrY~~~~~y~~ir~l 105 (124)
+.||+||..+-|. |+.|| ++|+-.=-++.++.|
T Consensus 1062 ~vc~~cG~~~~~~~~~~~~~c~~~~~~~~i~~~~iP~sfk~L~~EL~sm 1110 (1131)
T 4ayb_B 1062 YVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSM 1110 (1131)
T ss_dssp EECSSSCCBCEEETTTTEEECSSCSSSSCCEEEEEEHHHHHHHHHHHTT
T ss_pred eeccCCCceEEEeccCCceeCCccCCCCCccccCCCHHHHHHHHHHHHC
Confidence 5799999998775 88887 566555445555544
No 27
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=34.65 E-value=21 Score=19.46 Aligned_cols=21 Identities=5% Similarity=0.360 Sum_probs=15.7
Q ss_pred CcccCCCCCCCCccCHHHHHH
Q 033229 81 EAPYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 81 ~A~Y~dP~tglrY~~~~~y~~ 101 (124)
+++|+||.|+..--|.+-++.
T Consensus 1 ~~k~~CpvCk~q~Pd~kt~~~ 21 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMDTLQI 21 (28)
T ss_dssp CCCEECTTSSCEESSHHHHHH
T ss_pred CCcccCccccccCcChHHHHH
Confidence 467888888887777776654
No 28
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.73 E-value=21 Score=16.10 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=13.1
Q ss_pred ccCCCCCCCCccCHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFK 100 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~ 100 (124)
+|.|+.||-.|.....+.
T Consensus 2 ~~~C~~C~~~f~~~~~l~ 19 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGNLK 19 (29)
T ss_dssp CCCCSSCCCCCCTTTHHH
T ss_pred CCcCCCCCcccCCHHHHH
Confidence 478888888887765544
No 29
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.89 E-value=32 Score=21.30 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.9
Q ss_pred cccCCCCCCCCccCHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFK 100 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~ 100 (124)
.+|.||+|+..|.-.+..+
T Consensus 11 ~~~~CPrCn~~f~~~~sLr 29 (49)
T 2e72_A 11 GRKICPRCNAQFRVTEALR 29 (49)
T ss_dssp SCCCCTTTCCCCSSHHHHH
T ss_pred CceeCCcccccccchHHHH
Confidence 7899999999998766554
No 30
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=32.43 E-value=28 Score=16.04 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=14.5
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
+|.|+.||-.|.+...+..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~ 20 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLLIR 20 (30)
T ss_dssp CSBCTTTCCBCSSSHHHHH
T ss_pred CcCCcccCcccCChHHHHH
Confidence 4788889988888776653
No 31
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=32.21 E-value=18 Score=16.68 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=14.4
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
+|.|+.||-.|.+...+..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~ 20 (29)
T 1rik_A 2 KFACPECPKRFMRSDHLTL 20 (29)
T ss_dssp CEECSSSSCEESCSHHHHH
T ss_pred CccCCCCCchhCCHHHHHH
Confidence 4788888888887776553
No 32
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.80 E-value=26 Score=16.01 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=14.5
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
+|.|+.||-.|.+...+..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~ 21 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQMET 21 (28)
T ss_dssp SEECSSSCCEESCHHHHHH
T ss_pred CccCCCCCcccCCHHHHHH
Confidence 5888888888888766553
No 33
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=30.26 E-value=42 Score=16.43 Aligned_cols=19 Identities=11% Similarity=0.261 Sum_probs=14.9
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
+|.|+.||-.|.....+..
T Consensus 2 p~~C~~C~k~F~~~~~L~~ 20 (33)
T 1rim_A 2 KFACPECPKRFMRSDHLSK 20 (33)
T ss_dssp CCCCSSSCCCCSSHHHHHH
T ss_pred cccCCCCCchhCCHHHHHH
Confidence 4889999999988776653
No 34
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=29.41 E-value=31 Score=19.92 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=22.8
Q ss_pred cccccccCCCcccCCCCCCC-CccCHHHHH
Q 033229 72 KRICDITGFEAPYYDPRTNL-RYANAEVFK 100 (124)
Q Consensus 72 kkyCdITGl~A~Y~dP~tgl-rY~~~~~y~ 100 (124)
...|..+|.++..+|..++. .|++.++-.
T Consensus 9 ~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~ 38 (52)
T 2jw6_A 9 EQSCVNCGREAMSECTGCHKVNYCSTFCQR 38 (52)
T ss_dssp --CCSSSSSSCSEECTTTCSSEESSHHHHH
T ss_pred CCcCCCCCCCCcCcCCCCCCEeecCHHHHH
Confidence 45899999999999999986 588877654
No 35
>2l92_A Histone family protein nucleoid-structuring prote; H-NS, at HOOK, DNA binding protein; NMR {Burkholderia vietnamiensis}
Probab=29.21 E-value=19 Score=22.28 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=10.5
Q ss_pred CCCcccCCCCCCC
Q 033229 79 GFEAPYYDPRTNL 91 (124)
Q Consensus 79 Gl~A~Y~dP~tgl 91 (124)
..+++|+||.||.
T Consensus 2 ~~~aKYR~p~~G~ 14 (50)
T 2l92_A 2 STVPKYRDPATGK 14 (50)
T ss_dssp CCCCCEECTTTCC
T ss_pred CCCCeeccCCCCC
Confidence 3578999999884
No 36
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.74 E-value=46 Score=16.06 Aligned_cols=20 Identities=5% Similarity=0.001 Sum_probs=14.8
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-.|.|+.|+-.|.....+..
T Consensus 8 ~~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGTLKS 27 (36)
T ss_dssp SSCBCTTTCCBCSSHHHHHH
T ss_pred CCeecCcCCCCcCchHHHHH
Confidence 35888888888888766543
No 37
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.64 E-value=14 Score=16.90 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=11.5
Q ss_pred ccCCCCCCCCccCHHHH
Q 033229 83 PYYDPRTNLRYANAEVF 99 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y 99 (124)
+|.|+.||-.|.....+
T Consensus 2 p~~C~~C~k~f~~~~~l 18 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQL 18 (26)
Confidence 47777777777765544
No 38
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.16 E-value=20 Score=16.63 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=13.7
Q ss_pred ccCCCCCCCCccCHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFK 100 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~ 100 (124)
+|.|+.||-.|.....+.
T Consensus 3 ~~~C~~C~k~f~~~~~l~ 20 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLASMQ 20 (27)
T ss_dssp TEEETTTTEEESCHHHHH
T ss_pred CcCCCCCCcccCCHHHHH
Confidence 578888888888776554
No 39
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.15 E-value=35 Score=15.35 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=14.3
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
+|.|+.||-.|.+...+..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~ 20 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNLKR 20 (29)
T ss_dssp CEECTTTSCEESCHHHHHH
T ss_pred CccCCCCCCccCChhHHHH
Confidence 5788888888887766543
No 40
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.97 E-value=35 Score=16.39 Aligned_cols=19 Identities=5% Similarity=0.041 Sum_probs=14.9
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
+|.|+.||-.|.....+..
T Consensus 7 ~~~C~~C~k~f~~~~~L~~ 25 (35)
T 2elx_A 7 GYVCALCLKKFVSSIRLRS 25 (35)
T ss_dssp SEECSSSCCEESSHHHHHH
T ss_pred CeECCCCcchhCCHHHHHH
Confidence 5888899999988776653
No 41
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=25.88 E-value=32 Score=28.27 Aligned_cols=30 Identities=20% Similarity=0.093 Sum_probs=25.0
Q ss_pred CcccccccCC--CcccCCCCCCC-CccCHHHHH
Q 033229 71 CKRICDITGF--EAPYYDPRTNL-RYANAEVFK 100 (124)
Q Consensus 71 ~kkyCdITGl--~A~Y~dP~tgl-rY~~~~~y~ 100 (124)
....|+.||- .+...|+.|+. +||+.+|..
T Consensus 48 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~ 80 (433)
T 3qww_A 48 RGHHCECCFARKEGLSKCGRCKQAFYCDVECQK 80 (433)
T ss_dssp TTTBCTTTCCBCSSCEECTTTSCCEESSHHHHH
T ss_pred cCCcCCcccccCCCCCCCCCCcceeecChhhhh
Confidence 4568999995 57899999998 999988863
No 42
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=25.75 E-value=32 Score=19.75 Aligned_cols=14 Identities=0% Similarity=-0.064 Sum_probs=8.5
Q ss_pred cccCCCCCCCCccC
Q 033229 82 APYYDPRTNLRYAN 95 (124)
Q Consensus 82 A~Y~dP~tglrY~~ 95 (124)
-+|.|+.||-.|..
T Consensus 38 k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 38 GTFRCTFCHTEVEE 51 (62)
T ss_dssp TEEBCSSSCCBCEE
T ss_pred CCEECCCCCCcccc
Confidence 45666666666543
No 43
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=25.70 E-value=29 Score=24.69 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=18.7
Q ss_pred CCCcccccccCCC----------------c----------ccCCCCCCCC
Q 033229 69 HPCKRICDITGFE----------------A----------PYYDPRTNLR 92 (124)
Q Consensus 69 ~P~kkyCdITGl~----------------A----------~Y~dP~tglr 92 (124)
.|.+-.|--||.. . .+.||.||-+
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 3667789888876 4 6889999875
No 44
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.40 E-value=37 Score=15.35 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=14.6
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
+|.|+.||-.|.+...+..
T Consensus 3 ~~~C~~C~~~f~~~~~l~~ 21 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSKMR 21 (30)
T ss_dssp CEECTTTCCEESCHHHHHH
T ss_pred CccCCCCCcccCCHHHHHH
Confidence 5788888888888776654
No 45
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=25.08 E-value=37 Score=16.43 Aligned_cols=20 Identities=5% Similarity=-0.023 Sum_probs=15.6
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-+|.|+.||-.|.....+..
T Consensus 6 k~~~C~~C~k~f~~~~~l~~ 25 (35)
T 1srk_A 6 RPFVCRICLSAFTTKANCAR 25 (35)
T ss_dssp SCEECSSSCCEESSHHHHHH
T ss_pred cCeeCCCCCcccCCHHHHHH
Confidence 35888899999988776654
No 46
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=24.98 E-value=16 Score=32.18 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=15.9
Q ss_pred ccccHHHHHHHhhhCCCCCCCCCceeeeCCCCCCCCcccccccCCCcc-------cCCCCCCCC
Q 033229 36 HWKHLKQILQAENYQNYPPDEPNYVNIESPPSMHPCKRICDITGFEAP-------YYDPRTNLR 92 (124)
Q Consensus 36 ~~K~lkQll~~e~~~~~~~~~ptY~si~appS~~P~kkyCdITGl~A~-------Y~dP~tglr 92 (124)
-.+.+++|+.-... ...|+++.. +-.+|..||+.+. +.||.||-.
T Consensus 516 n~~a~~~lv~~~~~------~i~Y~~~n~------~~~~C~~CGy~~~~~~~~~~~~CP~Cg~~ 567 (605)
T 1h7b_A 516 NLKGLEAVWDYAAQ------HLDYFGVNM------PVDKCFTCGSTHEMTPTENGFVCSICGET 567 (605)
T ss_dssp CHHHHHHHHHHHHH------HCSEEEEEC------CEEET------------------------
T ss_pred CHHHHHHHHHHHHh------CCCeEEeCC------CCccCcccCCcCccCccccCCcCCCCCCC
Confidence 35556666654321 144888774 4568999998872 789999953
No 47
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=24.27 E-value=31 Score=25.20 Aligned_cols=57 Identities=14% Similarity=0.292 Sum_probs=35.6
Q ss_pred CcccccHHHHHHHhhhCCCCCCCCCceeeeCCCCC-CCCc---ccccc--cCC------CcccCCCCCCCCc
Q 033229 34 GRHWKHLKQILQAENYQNYPPDEPNYVNIESPPSM-HPCK---RICDI--TGF------EAPYYDPRTNLRY 93 (124)
Q Consensus 34 ~r~~K~lkQll~~e~~~~~~~~~ptY~si~appS~-~P~k---kyCdI--TGl------~A~Y~dP~tglrY 93 (124)
...||++.||.++.-. ..+.|.|+++.|-.+. ++.. .-|.. |+- .+.|.|+.|+--+
T Consensus 4 ~~~~kti~qi~~~~lg---~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~ 72 (181)
T 1l1o_C 4 NTNWKTLYEVKSENLG---QGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEF 72 (181)
T ss_dssp CCCBCCHHHHHHHTTT---SSSSCEEEEEEEEEEEECCSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEE
T ss_pred ccceEEHHHHhhhccC---CCCCCcEEEEEEEEEEEeCCCEEECCCCchhcCCccccCCCCeEECCCCCCcC
Confidence 3468999998876432 3366778887776552 2221 12555 442 3579999988655
No 48
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.66 E-value=39 Score=16.36 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=14.1
Q ss_pred ccCCCCCCCCccCHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFK 100 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~ 100 (124)
+|.|+.|+-.|.....+.
T Consensus 9 ~~~C~~C~k~f~~~~~l~ 26 (36)
T 2elt_A 9 PYKCPQCSYASAIKANLN 26 (36)
T ss_dssp SEECSSSSCEESSHHHHH
T ss_pred CCCCCCCCcccCCHHHHH
Confidence 588888888888876654
No 49
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.48 E-value=60 Score=16.30 Aligned_cols=20 Identities=10% Similarity=0.228 Sum_probs=15.6
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-+|.|+.||-.|.+...+..
T Consensus 9 k~~~C~~C~k~f~~~~~L~~ 28 (42)
T 2yte_A 9 KPYSCAECKETFSDNNRLVQ 28 (42)
T ss_dssp CSCBCTTTCCBCSSHHHHHH
T ss_pred CCeECCCCCCccCCHHHHHH
Confidence 35888999999988876654
No 50
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.40 E-value=41 Score=16.43 Aligned_cols=19 Identities=5% Similarity=-0.046 Sum_probs=14.5
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
+|.|+.|+-.|.....+..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2els_A 9 IFTCEYCNKVFKFKHSLQA 27 (36)
T ss_dssp CEECTTTCCEESSHHHHHH
T ss_pred CEECCCCCceeCCHHHHHH
Confidence 5888888888888766543
No 51
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.36 E-value=65 Score=16.27 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=16.0
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-+|.|+.||-.|.....+..
T Consensus 10 k~~~C~~C~k~f~~~~~L~~ 29 (42)
T 2eos_A 10 KPYPCEICGTRFRHLQTLKS 29 (42)
T ss_dssp CCBCCSSSCCCBSSHHHHHH
T ss_pred CCEECCCCCCccCCHHHHHH
Confidence 46889999999998877654
No 52
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=23.25 E-value=18 Score=23.00 Aligned_cols=18 Identities=33% Similarity=0.733 Sum_probs=14.3
Q ss_pred CCCCCCcccccccCC-Ccc
Q 033229 66 PSMHPCKRICDITGF-EAP 83 (124)
Q Consensus 66 pS~~P~kkyCdITGl-~A~ 83 (124)
.|.-.+++.|.-||+ ||.
T Consensus 26 ~syH~qK~~Ca~CGygpa~ 44 (57)
T 1vq8_1 26 KSYHTKKKVCSSCGFGKSA 44 (57)
T ss_dssp EEEETTTTEETTTCTTTCS
T ss_pred hhhhccccccccccCCchh
Confidence 345578999999999 874
No 53
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.24 E-value=62 Score=16.72 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=16.3
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-+|.|+.|+-.|.....+..
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2yti_A 11 KPYKCNECGKVFTQNSHLAR 30 (46)
T ss_dssp CTTCCSSSCCCCSSHHHHHH
T ss_pred cCeECCCCCcccCChhHHHH
Confidence 45899999999998877764
No 54
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.83 E-value=61 Score=16.89 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=15.8
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-+|.|+.|+-.|.....+..
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2eon_A 11 KPYKCQVCGKAFRVSSHLVQ 30 (46)
T ss_dssp CSCBCSSSCCBCSSHHHHHH
T ss_pred cccCCCCCCcccCcHHHHHH
Confidence 35888999999998877654
No 55
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.57 E-value=63 Score=16.22 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=15.7
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-+|.|+.||-.|.+...+..
T Consensus 10 k~~~C~~C~k~f~~~~~L~~ 29 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQKGSLIV 29 (42)
T ss_dssp CSBCCTTTTCCBSSHHHHHT
T ss_pred CCeeCCCccchhCCHHHHHH
Confidence 46889999999988776653
No 56
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.44 E-value=42 Score=16.37 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=14.9
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
+|.|+.|+-.|.....+..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elq_A 9 PFKCSLCEYATRSKSNLKA 27 (36)
T ss_dssp SEECSSSSCEESCHHHHHH
T ss_pred CccCCCCCchhCCHHHHHH
Confidence 5888889999988776653
No 57
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.43 E-value=64 Score=16.70 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=16.3
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-+|.|+.|+-.|.....+..
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2enf_A 11 KPYKCNECGKVFTQNSHLVR 30 (46)
T ss_dssp CSCBCSSSCCBCSSHHHHHH
T ss_pred cCeECCCCCcccCCHHHHHH
Confidence 45899999999998877764
No 58
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.20 E-value=31 Score=16.96 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=15.0
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-+|.|+.||-.|.....+..
T Consensus 8 k~~~C~~C~k~f~~~~~l~~ 27 (37)
T 2elo_A 8 RSYSCPVCEKSFSEDRLIKS 27 (37)
T ss_dssp CCCEETTTTEECSSHHHHHH
T ss_pred CCcCCCCCCCccCCHHHHHH
Confidence 35888888888888776653
No 59
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.08 E-value=25 Score=22.68 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=14.6
Q ss_pred CCCCCCCcccccccCC-Ccc
Q 033229 65 PPSMHPCKRICDITGF-EAP 83 (124)
Q Consensus 65 ppS~~P~kkyCdITGl-~A~ 83 (124)
.-|.-.+++.|.-||+ ||.
T Consensus 25 ~~syH~qK~~Ca~CGygps~ 44 (62)
T 3j21_e 25 RVSYNVKKGYCAACGFGRSR 44 (62)
T ss_dssp SBCEETTTTEETTTCTTTCS
T ss_pred cchhccccccccccCCchhh
Confidence 3455678999999999 653
No 60
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=21.99 E-value=43 Score=27.27 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=24.7
Q ss_pred CcccccccCC--CcccCCCCCCC-CccCHHHHH
Q 033229 71 CKRICDITGF--EAPYYDPRTNL-RYANAEVFK 100 (124)
Q Consensus 71 ~kkyCdITGl--~A~Y~dP~tgl-rY~~~~~y~ 100 (124)
....|+.||- ++...|+.|+. +||+.+|-.
T Consensus 46 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~ 78 (429)
T 3qwp_A 46 RGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQK 78 (429)
T ss_dssp BTTBCTTTCCBCSSCEECTTTSCCEESSHHHHH
T ss_pred CCCcCcCCCCcCCCCCcCCCCCCcccCChhhhh
Confidence 3457999994 67899999998 999988864
No 61
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.96 E-value=46 Score=16.23 Aligned_cols=19 Identities=11% Similarity=-0.088 Sum_probs=14.4
Q ss_pred ccCCCCCCCCccCHHHHHH
Q 033229 83 PYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP~tglrY~~~~~y~~ 101 (124)
+|.|+.|+-.|.....+..
T Consensus 9 ~~~C~~C~k~f~~~~~l~~ 27 (36)
T 2elv_A 9 LYDCHICERKFKNELDRDR 27 (36)
T ss_dssp CEECSSSCCEESSHHHHHH
T ss_pred CeECCCCCCccCCHHHHHH
Confidence 5888888888888776653
No 62
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.93 E-value=70 Score=16.21 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=15.9
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-+|.|+.||-.|.....+..
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (44)
T 2en7_A 11 KPYVCNECGKAFRSKSYLII 30 (44)
T ss_dssp SSSCCTTTCCCCSSHHHHHH
T ss_pred cCeECCCCCCccCCHHHHHH
Confidence 35889999999998877654
No 63
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.79 E-value=40 Score=16.87 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=15.3
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-+|.|+.||-.|.....+..
T Consensus 8 k~~~C~~C~k~f~~~~~L~~ 27 (37)
T 2elm_A 8 HLYYCSQCHYSSITKNCLKR 27 (37)
T ss_dssp CEEECSSSSCEEECHHHHHH
T ss_pred cCeECCCCCcccCCHHHHHH
Confidence 35888999999988776653
No 64
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.57 E-value=73 Score=16.51 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=16.3
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-+|.|+.|+-.|.....+..
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2yth_A 11 KPFQCEECGKRFTQNSHLHS 30 (46)
T ss_dssp SSBCCSSSCCCBSSHHHHHH
T ss_pred cCCCCCCCCcccCCHHHHHH
Confidence 46899999999998877664
No 65
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.00 E-value=70 Score=16.51 Aligned_cols=20 Identities=5% Similarity=0.202 Sum_probs=15.9
Q ss_pred cccCCCCCCCCccCHHHHHH
Q 033229 82 APYYDPRTNLRYANAEVFKL 101 (124)
Q Consensus 82 A~Y~dP~tglrY~~~~~y~~ 101 (124)
-+|.|+.||-.|.....+..
T Consensus 11 k~~~C~~C~k~f~~~~~L~~ 30 (46)
T 2emg_A 11 NPFICSECGKVFTHKTNLII 30 (46)
T ss_dssp CSCBCTTTCCBCSSHHHHHH
T ss_pred CCEECCccCcccCCHHHHHH
Confidence 35889999999988877664
No 66
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=20.93 E-value=78 Score=14.68 Aligned_cols=19 Identities=11% Similarity=0.340 Sum_probs=14.8
Q ss_pred ccCCC--CCCCCccCHHHHHH
Q 033229 83 PYYDP--RTNLRYANAEVFKL 101 (124)
Q Consensus 83 ~Y~dP--~tglrY~~~~~y~~ 101 (124)
+|.|+ .||-.|.....+..
T Consensus 2 p~~C~~~~C~k~f~~~~~L~~ 22 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTRSDELQR 22 (31)
T ss_dssp CCBCCSTTCCCBCSSHHHHHH
T ss_pred CcCCcCCCCCcccCCHhHHHH
Confidence 57887 89999988776654
No 67
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=20.62 E-value=71 Score=19.45 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=22.8
Q ss_pred CceeeeCCCCCCCCcccccccCC-------CcccCCCCCCCCc
Q 033229 58 NYVNIESPPSMHPCKRICDITGF-------EAPYYDPRTNLRY 93 (124)
Q Consensus 58 tY~si~appS~~P~kkyCdITGl-------~A~Y~dP~tglrY 93 (124)
.|..|+. -.+.-.+++|+-||- ..+|.|.+||.-+
T Consensus 5 ~~y~v~~-gki~~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 5 ELYEIAD-GKLVRKHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CCCCCCC-CCCCCSSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred EEEEEcC-CEEEEccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 4556654 344445788988883 3477888887654
No 68
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.46 E-value=37 Score=25.07 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=14.1
Q ss_pred cccccccCCCc-----ccCCCCCCCC
Q 033229 72 KRICDITGFEA-----PYYDPRTNLR 92 (124)
Q Consensus 72 kkyCdITGl~A-----~Y~dP~tglr 92 (124)
+-.|.+||+.- +=.||.||.+
T Consensus 155 ~~~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred eEEECCCCCEeeCCCCCCCCCCCcCC
Confidence 45688888762 2278888865
Done!