BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033230
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AWL|B Chain B, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K N P T + KDA E FI ++++ A++ C + KR+TI
Sbjct: 10 LPIANVARIMK----NAIPQTG-KIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 64
Query: 73 NAEDVLKAIEEIDFTEFVDPLR 94
N ED+L A+ + F +V+PL+
Sbjct: 65 NGEDILFAMSTLGFDSYVEPLK 86
>pdb|1N1J|A Chain A, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 93
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K N P T + KDA E FI ++++ A++ C + KR+TI
Sbjct: 9 LPIANVARIMK----NAIPQTG-KIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 63
Query: 73 NAEDVLKAIEEIDFTEFVDPLR 94
N ED+L A+ + F +V+PL+
Sbjct: 64 NGEDILFAMSTLGFDSYVEPLK 85
>pdb|1JFI|B Chain B, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 179
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
+P+ + +++K+ L N + V DA FIH +S+ AN+IC +S+++TI
Sbjct: 16 IPRAAINKMIKETLPN------VRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTI 69
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLD 98
+ E V++A+E + F ++ +++ L
Sbjct: 70 SPEHVIQALESLGFGSYISEVKEVLQ 95
>pdb|4G91|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 92
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP V R++K L P+ + + K+A E FI ++++ A++ C++ KR+T+
Sbjct: 8 LPIANVARIMKLAL----PE-NAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTV 62
Query: 73 NAEDVLKAIEEIDFTEFVDPLR 94
N ED+L A+ + F + + L+
Sbjct: 63 NGEDILFAMTSLGFENYAEALK 84
>pdb|2BYK|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYK|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
Length = 128
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTI 72
LP ++ R++K+ L + SV K+A A +A +F ++++++ + + +TI
Sbjct: 10 LPNAVIGRLIKEALPESA-----SVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTI 64
Query: 73 NAEDVLKAIEEIDFTEFVDPLRDSLD 98
A+D+L+ + E+DF FV L L+
Sbjct: 65 TAKDILQTLTELDFESFVPSLTQDLE 90
>pdb|1N1J|B Chain B, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 97
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 11 EELPKTIVRRVVKDKLHNCSPDTDIS-VHKDALLAFCESARIFIHYLSATANDICKESKR 69
+ELP +++++K D D+ + +A + F ++A+IFI L+ A +++KR
Sbjct: 18 QELPLARIKKIMK-------LDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKR 70
Query: 70 QTINAEDVLKAIEEIDFTEFV 90
+T+ D+ AI + D +F+
Sbjct: 71 RTLQRNDIAMAITKFDQFDFL 91
>pdb|4AWL|C Chain C, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 11 EELPKTIVRRVVKDKLHNCSPDTDIS-VHKDALLAFCESARIFIHYLSATANDICKESKR 69
+ELP +++++K D D+ + +A + F ++A+IFI L+ A +++KR
Sbjct: 15 QELPLARIKKIMK-------LDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKR 67
Query: 70 QTINAEDVLKAIEEIDFTEFV 90
+T+ D+ AI + D +F+
Sbjct: 68 RTLQRNDIAMAITKFDQFDFL 88
>pdb|4G91|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 119
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQ 70
+LP +++V+K P+ + + +A + F + +FI L+ A +++KR+
Sbjct: 40 HQLPLARIKKVMK-----ADPEVKM-ISAEAPILFAKGCDVFITELTMRAWIHAEDNKRR 93
Query: 71 TINAEDVLKAIEEIDFTEFV 90
T+ D+ A+ + D +F+
Sbjct: 94 TLQRSDIAAALSKSDMFDFL 113
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 19/90 (21%)
Query: 33 TDISVHKDALLAFCESARIFI---------HYLSATANDICKESKRQTINAEDVLKAIEE 83
TD+ DA+L FC + + H+++A D S R + V
Sbjct: 233 TDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTS----SVFFLRPN 288
Query: 84 IDFTEFVDPLRD-----SLDGQL-TFRNWI 107
DFT V R+ SLDG+ TF++WI
Sbjct: 289 ADFTFSVPLARECGFDVSLDGETATFQDWI 318
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 19/90 (21%)
Query: 33 TDISVHKDALLAFCESARIFI---------HYLSATANDICKESKRQTINAEDVLKAIEE 83
TD+ DA+L FC + + H+++A D S R + V
Sbjct: 213 TDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTS----SVFFLRPN 268
Query: 84 IDFTEFVDPLRD-----SLDGQL-TFRNWI 107
DFT V R+ SLDG+ TF++WI
Sbjct: 269 ADFTFSVPLARECGFDVSLDGETATFQDWI 298
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 19/90 (21%)
Query: 33 TDISVHKDALLAFCESARIFI---------HYLSATANDICKESKRQTINAEDVLKAIEE 83
TD+ DA+L FC + + H+++A D S R + V
Sbjct: 213 TDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTS----SVFFLRPN 268
Query: 84 IDFTEFVDPLRD-----SLDGQL-TFRNWI 107
DFT V R+ SLDG+ TF++WI
Sbjct: 269 ADFTFSVPLARECGFDVSLDGETATFQDWI 298
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 19/90 (21%)
Query: 33 TDISVHKDALLAFCESARIFI---------HYLSATANDICKESKRQTINAEDVLKAIEE 83
TD+ DA+L FC + + H+++A D S R + V
Sbjct: 213 TDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTS----SVFFLRPN 268
Query: 84 IDFTEFVDPLRD-----SLDGQL-TFRNWI 107
DFT V R+ SLDG+ TF++WI
Sbjct: 269 ADFTFSVPLARECGFDVSLDGETATFQDWI 298
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 19/90 (21%)
Query: 33 TDISVHKDALLAFCESARIFI---------HYLSATANDICKESKRQTINAEDVLKAIEE 83
TD+ DA+L FC + + H+++A D S + + V
Sbjct: 213 TDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSQTS----SVFFLRPN 268
Query: 84 IDFTEFVDPLRD-----SLDGQL-TFRNWI 107
DFT V R+ SLDG+ TF++WI
Sbjct: 269 ADFTFSVPLARECGFDVSLDGETATFQDWI 298
>pdb|3VH5|W Chain W, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
Crystal Form I
pdb|3VH6|W Chain W, Crystal Structure Of The Chicken Cenp-T Histone
FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
Crystal Form Ii
Length = 77
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 13 LPKTIVRRVVKD-KLH-NCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQ 70
+P+ +R+++K K H + +TD+ VH L+F +F+H L+ A E+K +
Sbjct: 6 VPRGTLRKIIKKHKPHLRLAANTDLLVH----LSFL----LFLHRLAEEARTNAFENKSK 57
Query: 71 TINAEDVLKAIEEI 84
I E + A + I
Sbjct: 58 IIKPEHTIAAAKVI 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,483,833
Number of Sequences: 62578
Number of extensions: 115906
Number of successful extensions: 540
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 17
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)