Query 033230
Match_columns 124
No_of_seqs 107 out of 521
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 18:53:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 2.7E-29 9.2E-34 191.8 10.5 94 6-105 9-102 (179)
2 1n1j_A NF-YB; histone-like PAI 100.0 6.3E-29 2.2E-33 170.9 10.7 91 7-102 3-93 (93)
3 2byk_B Chrac-14; nucleosome sl 100.0 3.3E-28 1.1E-32 177.0 10.1 93 8-105 5-97 (128)
4 3b0c_W CENP-W, centromere prot 99.9 2.2E-22 7.7E-27 133.9 6.6 68 11-84 3-70 (76)
5 1f1e_A Histone fold protein; a 99.8 3.3E-21 1.1E-25 144.1 7.2 75 11-91 3-77 (154)
6 1b67_A Protein (histone HMFA); 99.8 1E-19 3.4E-24 118.1 7.8 66 12-84 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.8 1.3E-19 4.6E-24 128.7 7.6 93 8-107 3-97 (111)
8 1f1e_A Histone fold protein; a 99.7 1.3E-17 4.3E-22 124.7 8.4 75 2-83 72-146 (154)
9 2hue_C Histone H4; mini beta s 99.7 1.7E-16 5.7E-21 107.4 7.7 71 12-89 10-80 (84)
10 4g92_C HAPE; transcription fac 99.7 2.3E-16 7.7E-21 113.0 7.8 77 8-90 37-113 (119)
11 1ku5_A HPHA, archaeal histon; 99.6 4.1E-16 1.4E-20 101.8 7.5 64 12-82 6-69 (70)
12 1id3_B Histone H4; nucleosome 99.6 4E-16 1.4E-20 109.3 7.6 71 12-89 28-98 (102)
13 1n1j_B NF-YC; histone-like PAI 99.6 7.7E-16 2.6E-20 106.5 7.7 76 10-91 17-92 (97)
14 2byk_A Chrac-16; nucleosome sl 99.6 1.9E-16 6.5E-21 116.6 3.4 91 8-104 15-109 (140)
15 1tzy_D Histone H4-VI; histone- 99.6 5E-15 1.7E-19 103.5 7.9 71 12-89 29-99 (103)
16 2yfw_B Histone H4, H4; cell cy 99.6 6.3E-15 2.1E-19 103.1 6.7 71 12-89 29-99 (103)
17 2hue_B Histone H3; mini beta s 99.4 1.4E-12 4.6E-17 87.5 7.9 74 10-85 1-74 (77)
18 1jfi_A Transcription regulator 99.4 8.6E-13 2.9E-17 91.4 6.4 76 10-91 9-84 (98)
19 3nqj_A Histone H3-like centrom 99.3 3.4E-12 1.2E-16 86.5 6.0 75 11-85 2-76 (82)
20 2yfv_A Histone H3-like centrom 99.2 2.6E-11 9E-16 84.8 7.2 75 8-82 23-98 (100)
21 3r45_A Histone H3-like centrom 99.2 4.6E-11 1.6E-15 89.3 7.4 78 8-85 73-150 (156)
22 3nqu_A Histone H3-like centrom 99.1 4.2E-11 1.5E-15 88.1 5.4 79 8-86 57-135 (140)
23 1tzy_C Histone H3; histone-fol 99.1 1.2E-10 4E-15 85.4 6.1 76 8-85 58-133 (136)
24 1taf_B TFIID TBP associated fa 99.1 8.4E-10 2.9E-14 72.6 8.1 65 11-82 5-69 (70)
25 2ly8_A Budding yeast chaperone 99.0 1.1E-09 3.7E-14 78.9 7.2 76 12-87 1-115 (121)
26 4dra_A Centromere protein S; D 99.0 1.3E-09 4.3E-14 77.7 7.3 64 17-84 32-95 (113)
27 3v9r_A MHF1, uncharacterized p 98.9 5.3E-09 1.8E-13 71.8 7.2 64 17-84 17-80 (90)
28 3b0b_B CENP-S, centromere prot 98.9 7.2E-09 2.5E-13 73.1 7.2 77 17-99 24-100 (107)
29 3vh5_A CENP-S; histone fold, c 98.8 9.7E-09 3.3E-13 75.5 7.3 64 17-84 24-87 (140)
30 1taf_A TFIID TBP associated fa 98.8 2.5E-08 8.5E-13 65.2 7.5 61 16-83 5-65 (68)
31 2nqb_C Histone H2A; nucleosome 98.6 1.6E-07 5.4E-12 67.5 7.4 68 10-83 21-88 (123)
32 1tzy_A Histone H2A-IV; histone 98.6 2.1E-07 7E-12 67.4 7.4 68 10-83 23-90 (129)
33 2f8n_G Core histone macro-H2A. 98.5 2.1E-07 7.2E-12 66.6 7.2 68 10-83 20-87 (120)
34 1id3_C Histone H2A.1; nucleoso 98.5 1.8E-07 6.1E-12 67.9 6.9 69 9-83 22-90 (131)
35 2l5a_A Histone H3-like centrom 98.5 2.6E-07 8.8E-12 72.9 6.6 76 10-85 9-85 (235)
36 1f66_C Histone H2A.Z; nucleoso 98.5 4.3E-07 1.5E-11 65.7 7.1 69 10-83 25-93 (128)
37 2f8n_K Histone H2A type 1; nuc 98.5 4E-07 1.4E-11 67.5 7.1 68 10-83 42-109 (149)
38 2l5a_A Histone H3-like centrom 98.5 1.4E-07 4.8E-12 74.4 4.7 53 33-85 175-227 (235)
39 2nqb_D Histone H2B; nucleosome 98.4 8.8E-07 3E-11 63.8 6.5 66 16-87 37-102 (123)
40 1tzy_B Histone H2B; histone-fo 98.3 1.1E-06 3.9E-11 63.5 6.5 67 16-88 40-106 (126)
41 2jss_A Chimera of histone H2B. 98.3 2.1E-06 7.1E-11 65.4 6.9 70 9-83 102-171 (192)
42 4dra_E Centromere protein X; D 98.1 1.8E-05 6.3E-10 53.5 8.1 71 10-84 10-80 (84)
43 3b0b_C CENP-X, centromere prot 98.1 1.6E-05 5.4E-10 53.4 7.4 72 9-84 5-76 (81)
44 2jss_A Chimera of histone H2B. 98.1 1.1E-05 3.7E-10 61.4 7.4 63 16-84 7-69 (192)
45 1h3o_B Transcription initiatio 98.0 2.4E-05 8.2E-10 52.0 7.6 66 12-83 5-70 (76)
46 1bh9_B TAFII28; histone fold, 97.8 0.00011 3.7E-09 50.0 7.6 68 12-86 16-84 (89)
47 3v9r_B MHF2, uncharacterized p 96.9 0.0023 7.9E-08 43.5 5.8 51 12-66 1-51 (88)
48 3uk6_A RUVB-like 2; hexameric 93.0 0.25 8.7E-06 38.2 6.7 67 13-83 259-329 (368)
49 3ksy_A SOS-1, SON of sevenless 91.1 0.66 2.3E-05 42.5 7.9 67 10-83 102-168 (1049)
50 2c9o_A RUVB-like 1; hexameric 87.9 0.91 3.1E-05 37.1 5.8 50 35-84 384-437 (456)
51 2v1u_A Cell division control p 85.5 2 6.8E-05 32.8 6.2 69 15-85 203-277 (387)
52 1khy_A CLPB protein; alpha hel 85.4 1.4 4.7E-05 30.1 4.8 37 36-84 5-41 (148)
53 3fh2_A Probable ATP-dependent 83.5 1.5 5.2E-05 30.3 4.4 36 36-83 6-41 (146)
54 3fes_A ATP-dependent CLP endop 83.3 4.3 0.00015 27.9 6.7 60 14-85 58-118 (145)
55 3kw6_A 26S protease regulatory 83.0 1.2 4.2E-05 27.7 3.4 32 53-84 42-73 (78)
56 2y1q_A CLPC N-domain, negative 81.3 1.3 4.5E-05 30.4 3.3 36 36-83 5-40 (150)
57 3fes_A ATP-dependent CLP endop 81.2 1.7 5.7E-05 30.1 3.9 38 35-84 6-43 (145)
58 2qby_A CDC6 homolog 1, cell di 80.2 4.7 0.00016 30.5 6.5 75 13-89 197-277 (386)
59 3fh2_A Probable ATP-dependent 80.1 9.3 0.00032 26.1 7.5 60 13-84 56-117 (146)
60 1fnn_A CDC6P, cell division co 79.7 11 0.00039 28.6 8.6 80 13-94 193-284 (389)
61 1k6k_A ATP-dependent CLP prote 79.3 1.6 5.6E-05 29.6 3.3 33 37-81 2-34 (143)
62 2dzn_B 26S protease regulatory 78.3 2.7 9.1E-05 26.5 3.9 28 58-85 42-69 (82)
63 3vlf_B 26S protease regulatory 77.3 2.7 9.3E-05 27.0 3.7 35 53-87 40-74 (88)
64 1g8p_A Magnesium-chelatase 38 76.3 7.1 0.00024 29.5 6.4 52 34-85 265-323 (350)
65 1k6k_A ATP-dependent CLP prote 76.2 6.8 0.00023 26.4 5.8 38 34-83 77-114 (143)
66 3aji_B S6C, proteasome (prosom 75.6 2.5 8.4E-05 26.5 3.1 31 55-85 42-72 (83)
67 2y1q_A CLPC N-domain, negative 74.7 7.8 0.00027 26.3 5.8 57 15-83 57-114 (150)
68 3k1j_A LON protease, ATP-depen 73.9 14 0.00046 31.3 8.1 65 35-100 313-390 (604)
69 3zri_A CLPB protein, CLPV; cha 73.6 10 0.00034 27.4 6.4 40 34-85 96-136 (171)
70 2krk_A 26S protease regulatory 71.3 4.8 0.00016 25.9 3.8 29 56-84 53-81 (86)
71 1wwi_A Hypothetical protein TT 70.0 9.2 0.00031 27.9 5.4 75 13-104 3-77 (148)
72 3zri_A CLPB protein, CLPV; cha 69.3 4.3 0.00015 29.4 3.6 37 36-84 24-60 (171)
73 2kru_A Light-independent proto 66.6 3.8 0.00013 25.9 2.4 51 34-85 3-54 (63)
74 1khy_A CLPB protein; alpha hel 66.3 14 0.00048 24.9 5.5 36 35-82 81-116 (148)
75 2qby_B CDC6 homolog 3, cell di 65.7 13 0.00044 28.4 5.8 69 13-85 197-271 (384)
76 1in4_A RUVB, holliday junction 64.6 17 0.00056 28.1 6.3 53 35-87 198-253 (334)
77 1r4v_A Hypothetical protein AQ 63.9 8.2 0.00028 28.8 4.1 76 12-104 26-101 (171)
78 2r44_A Uncharacterized protein 63.0 39 0.0013 25.5 8.1 51 34-84 224-297 (331)
79 3h4m_A Proteasome-activating n 60.8 8.6 0.00029 28.4 3.9 33 52-84 226-258 (285)
80 2l09_A ASR4154 protein; proto- 60.8 4.4 0.00015 25.5 1.8 50 35-85 3-53 (62)
81 3pxg_A Negative regulator of g 59.7 9.8 0.00034 31.2 4.3 38 36-85 5-42 (468)
82 2chg_A Replication factor C sm 58.3 14 0.00048 25.1 4.4 64 13-82 161-224 (226)
83 2f3n_A SH3 and multiple ankyri 58.3 8.1 0.00028 24.1 2.9 23 72-94 5-27 (76)
84 3bos_A Putative DNA replicatio 57.6 20 0.00069 25.0 5.2 61 16-82 177-241 (242)
85 1njg_A DNA polymerase III subu 57.4 15 0.00051 25.2 4.4 65 13-82 185-249 (250)
86 1lv7_A FTSH; alpha/beta domain 55.0 14 0.00048 26.9 4.1 33 53-85 221-253 (257)
87 3pxi_A Negative regulator of g 53.4 14 0.00046 32.0 4.3 38 36-85 5-42 (758)
88 3bq7_A Diacylglycerol kinase d 53.2 11 0.00037 23.8 2.9 25 71-95 9-33 (81)
89 3b9p_A CG5977-PA, isoform A; A 51.9 27 0.00094 25.8 5.4 59 36-94 208-282 (297)
90 3pxg_A Negative regulator of g 49.5 41 0.0014 27.4 6.5 61 12-84 54-115 (468)
91 4b4t_M 26S protease regulatory 48.7 16 0.00054 30.4 3.9 32 53-84 391-422 (434)
92 3pxi_A Negative regulator of g 47.4 42 0.0014 28.9 6.5 61 12-84 54-115 (758)
93 4b4t_L 26S protease subunit RP 47.2 20 0.00067 29.8 4.2 32 53-84 391-422 (437)
94 1uxc_A FRUR (1-57), fructose r 47.1 23 0.0008 21.5 3.6 38 9-52 8-45 (65)
95 4b4t_I 26S protease regulatory 46.7 20 0.00068 30.1 4.2 31 53-83 392-422 (437)
96 1r6b_X CLPA protein; AAA+, N-t 45.4 36 0.0012 29.2 5.7 39 34-84 77-115 (758)
97 4b4t_J 26S protease regulatory 45.4 22 0.00074 29.5 4.2 31 53-83 358-388 (405)
98 4b4t_H 26S protease regulatory 43.3 21 0.00073 30.1 3.9 32 53-84 419-450 (467)
99 1w5s_A Origin recognition comp 42.4 93 0.0032 23.6 7.2 71 13-85 215-294 (412)
100 1qvr_A CLPB protein; coiled co 42.4 21 0.00071 31.5 3.8 35 36-82 5-39 (854)
101 1ixz_A ATP-dependent metallopr 42.1 27 0.00091 25.3 3.9 27 56-82 228-254 (254)
102 2ns0_A Hypothetical protein; r 41.4 74 0.0025 20.9 6.6 44 65-109 18-61 (85)
103 3f8t_A Predicted ATPase involv 40.1 74 0.0025 27.3 6.7 29 56-84 455-483 (506)
104 1iy2_A ATP-dependent metallopr 39.2 31 0.0011 25.5 3.9 27 56-82 252-278 (278)
105 1r6b_X CLPA protein; AAA+, N-t 39.2 24 0.0008 30.4 3.6 34 37-82 2-35 (758)
106 3pm8_A PFCDPK2, calcium-depend 39.1 92 0.0032 21.5 6.3 79 12-98 21-100 (197)
107 3pfi_A Holliday junction ATP-d 38.9 52 0.0018 24.7 5.2 70 14-87 185-257 (338)
108 1kw4_A Polyhomeotic; SAM domai 38.7 24 0.00084 22.8 2.9 25 71-95 16-41 (89)
109 1hqc_A RUVB; extended AAA-ATPa 38.6 42 0.0014 24.9 4.6 70 13-86 168-240 (324)
110 3vfd_A Spastin; ATPase, microt 38.3 1.4E+02 0.0047 23.2 8.1 69 15-87 284-368 (389)
111 1jr3_A DNA polymerase III subu 38.0 33 0.0011 25.9 3.9 69 12-85 177-245 (373)
112 4b4t_K 26S protease regulatory 37.8 34 0.0011 28.3 4.2 31 53-83 383-413 (428)
113 2gle_A Neurabin-1; SAM domain, 37.7 9 0.00031 23.5 0.6 22 72-93 7-28 (74)
114 1bh9_A TAFII18; histone fold, 37.5 57 0.002 18.8 4.1 27 36-62 18-44 (45)
115 2qz4_A Paraplegin; AAA+, SPG7, 37.0 10 0.00036 27.3 0.9 32 53-84 218-249 (262)
116 3pvs_A Replication-associated 35.8 1.1E+02 0.0038 24.9 7.1 73 12-85 164-245 (447)
117 1tiz_A Calmodulin-related prot 35.0 57 0.002 17.8 4.3 39 62-100 8-46 (67)
118 3iz5_t 60S acidic ribosomal pr 34.8 15 0.00053 25.2 1.4 46 66-116 16-64 (110)
119 2d8c_A Phosphatidylcholine:cer 33.3 15 0.00052 24.4 1.2 23 71-93 19-41 (97)
120 1jr3_D DNA polymerase III, del 32.7 31 0.0011 26.3 3.0 68 12-83 141-208 (343)
121 2chq_A Replication factor C sm 32.6 82 0.0028 22.9 5.3 68 12-85 160-227 (319)
122 1ofh_A ATP-dependent HSL prote 31.9 84 0.0029 22.8 5.2 52 35-86 233-301 (310)
123 1iqp_A RFCS; clamp loader, ext 31.3 97 0.0033 22.6 5.5 66 13-84 169-234 (327)
124 3nbx_X ATPase RAVA; AAA+ ATPas 31.3 1.5E+02 0.0051 24.7 7.2 46 34-79 223-281 (500)
125 5pal_A Parvalbumin; calcium-bi 31.2 69 0.0023 19.6 4.1 42 59-100 45-89 (109)
126 4a4j_A Pacszia, cation-transpo 30.1 28 0.00096 19.6 1.9 18 70-87 48-65 (69)
127 1sxj_D Activator 1 41 kDa subu 28.7 1.8E+02 0.0061 21.5 8.5 69 12-85 191-264 (353)
128 2r62_A Cell division protease 27.9 31 0.0011 25.1 2.2 31 56-86 225-255 (268)
129 3fwb_A Cell division control p 27.7 1.2E+02 0.0041 19.3 8.0 41 59-99 100-140 (161)
130 1lng_A SRP19, signal recogniti 27.4 39 0.0013 22.1 2.4 27 65-91 14-48 (87)
131 3omb_A Extracellular solute-bi 27.3 32 0.0011 27.8 2.4 64 37-102 471-535 (535)
132 2kz2_A Calmodulin, CAM; TR2C, 27.0 1.1E+02 0.0038 18.6 4.7 41 60-100 34-74 (94)
133 1sxj_B Activator 1 37 kDa subu 26.7 38 0.0013 24.8 2.5 68 12-85 165-232 (323)
134 3iwl_A Copper transport protei 26.3 35 0.0012 19.6 1.9 17 71-87 45-61 (68)
135 2ktg_A Calmodulin, putative; e 25.4 95 0.0033 17.9 3.8 41 60-100 19-59 (85)
136 3eus_A DNA-binding protein; st 25.3 98 0.0033 18.7 4.0 33 66-98 48-80 (86)
137 2lbf_B 60S acidic ribosomal pr 24.9 66 0.0022 20.2 3.0 28 60-87 7-34 (70)
138 1u5t_A Appears to BE functiona 24.8 84 0.0029 24.1 4.2 37 49-85 88-142 (233)
139 2yud_A YTH domain-containing p 24.7 58 0.002 24.0 3.2 44 71-114 33-76 (180)
140 2joj_A Centrin protein; N-term 24.7 81 0.0028 17.8 3.3 35 64-98 16-50 (77)
141 2e8o_A SAM domain and HD domai 24.0 30 0.001 22.7 1.4 22 72-93 30-53 (103)
142 3ezq_B Protein FADD; apoptosis 23.6 1.8E+02 0.0061 19.8 7.4 41 62-104 55-95 (122)
143 1s6j_A CDPK, calcium-dependent 23.5 99 0.0034 17.9 3.6 39 62-100 30-68 (87)
144 3dxs_X Copper-transporting ATP 23.3 33 0.0011 19.7 1.3 18 70-87 49-66 (74)
145 2opo_A Polcalcin CHE A 3; calc 23.3 1.2E+02 0.004 17.6 4.0 37 62-99 18-54 (86)
146 1v85_A Similar to ring finger 22.8 38 0.0013 21.7 1.7 23 71-93 19-43 (91)
147 3bs7_A Protein aveugle; sterIl 22.7 46 0.0016 20.4 2.0 23 72-94 6-30 (78)
148 2lv7_A Calcium-binding protein 22.7 69 0.0024 20.3 2.9 53 35-99 28-80 (100)
149 1ich_A TNF-1, tumor necrosis f 22.5 64 0.0022 22.1 2.8 38 62-99 63-100 (112)
150 1jhg_A Trp operon repressor; c 22.5 43 0.0015 22.5 1.9 30 9-47 66-95 (101)
151 2l8n_A Transcriptional repress 22.4 72 0.0025 19.3 2.8 33 11-52 19-51 (67)
152 1avs_A Troponin C; muscle cont 21.9 1.3E+02 0.0045 17.6 4.6 41 60-100 25-65 (90)
153 3bs5_B Connector enhancer of k 21.2 69 0.0024 19.6 2.6 24 72-95 7-32 (80)
154 3f9v_A Minichromosome maintena 21.0 73 0.0025 27.0 3.5 30 54-83 557-586 (595)
155 1u5t_B Defective in vacuolar p 20.9 1.2E+02 0.0041 21.8 4.2 15 71-85 59-73 (169)
156 3cuq_A Vacuolar-sorting protei 20.9 63 0.0022 24.9 2.8 36 50-85 70-128 (234)
157 1ixs_A Holliday junction DNA h 20.8 39 0.0013 20.6 1.3 14 75-88 18-31 (62)
158 1kvn_A SRP19; RNA binding prot 20.8 49 0.0017 22.4 1.9 20 72-91 32-51 (104)
159 3dlu_A SRP19, signal recogniti 20.7 52 0.0018 22.4 2.0 25 64-88 16-48 (106)
160 1whz_A Hypothetical protein; a 20.6 47 0.0016 20.0 1.7 17 71-87 4-20 (70)
161 2wbm_A MTHSBDS, ribosome matur 20.2 2.9E+02 0.01 21.3 6.5 84 17-107 92-178 (252)
162 3tdu_C Cullin-1, CUL-1; E2:E3, 20.2 1.3E+02 0.0045 18.9 3.8 17 68-84 41-57 (77)
163 1pva_A Parvalbumin; calcium bi 20.2 1.5E+02 0.0053 17.8 5.9 42 59-100 46-90 (110)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=2.7e-29 Score=191.80 Aligned_cols=94 Identities=26% Similarity=0.502 Sum_probs=88.0
Q ss_pred ccccccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 6 VVPEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 6 ~~~ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
...+|+.||+|+|.||||++|| +++||+||+++|++|+++||+|||++|+++|.++|||||+++||++||++||
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp------~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg 82 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP------NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG 82 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST------TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred CchhhhhcCHHHHHHHHHHhCC------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence 3568999999999999999997 5899999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhhhc
Q 033230 86 FTEFVDPLRDSLDGQLTFRN 105 (124)
Q Consensus 86 f~~~~~~l~~~l~~~~~~~~ 105 (124)
|++|+++|+.+|+.||+...
T Consensus 83 F~~fv~~lk~~L~~yre~~~ 102 (179)
T 1jfi_B 83 FGSYISEVKEVLQECKTVAL 102 (179)
T ss_dssp TGGGHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998653
No 2
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=6.3e-29 Score=170.93 Aligned_cols=91 Identities=30% Similarity=0.468 Sum_probs=84.9
Q ss_pred cccccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCC
Q 033230 7 VPEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDF 86 (124)
Q Consensus 7 ~~ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf 86 (124)
..+|+.||+|+|.||||+++|+ +.+||+||+.++++|+++||.+|+++|++.|.++|||||+++||..|++.+||
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~~-----~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F 77 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIPQ-----TGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGF 77 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSCT-----TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTC
T ss_pred CcccccCChhHHHHHHHHhCCc-----cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 4678999999999999999984 68999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHh
Q 033230 87 TEFVDPLRDSLDGQLT 102 (124)
Q Consensus 87 ~~~~~~l~~~l~~~~~ 102 (124)
.+|+++++.+|++||+
T Consensus 78 ~~~i~~~~~~l~~~r~ 93 (93)
T 1n1j_A 78 DSYVEPLKLYLQKFRE 93 (93)
T ss_dssp GGGHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHhC
Confidence 9999999999999985
No 3
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.95 E-value=3.3e-28 Score=176.97 Aligned_cols=93 Identities=27% Similarity=0.504 Sum_probs=84.1
Q ss_pred ccccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCc
Q 033230 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (124)
Q Consensus 8 ~ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (124)
++++.||+|+|.||||+++|+ +.+||+||+.+|++|+++||+|||++|+++|.++|||||+++||+.||+.+||.
T Consensus 5 ~~d~~LP~A~I~rImK~~~pd-----~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 5 IEDLNLPNAVIGRLIKEALPE-----SASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp ------CCSHHHHHHHHHSCT-----TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred cccccCCHHHHHHHHHHhCcc-----cceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 478999999999999999984 689999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhhc
Q 033230 88 EFVDPLRDSLDGQLTFRN 105 (124)
Q Consensus 88 ~~~~~l~~~l~~~~~~~~ 105 (124)
+|+++|+.+|+.||+...
T Consensus 80 ~fl~~lk~~l~~yr~~~~ 97 (128)
T 2byk_B 80 SFVPSLTQDLEVYRKVVK 97 (128)
T ss_dssp TTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998654
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.86 E-value=2.2e-22 Score=133.95 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=64.2
Q ss_pred cccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 11 ~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
..||+|+|.||||+++| +++||+||.+++++|+++||++|+++|++.|.++|||||+++||+.|++.+
T Consensus 3 ~~LP~A~V~rI~K~~~p------~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP------HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp -CCCHHHHHHHHHHHCT------TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCC------CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 47999999999999997 589999999999999999999999999999999999999999999998764
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.84 E-value=3.3e-21 Score=144.06 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=71.1
Q ss_pred cccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCcccH
Q 033230 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFV 90 (124)
Q Consensus 11 ~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~~ 90 (124)
.+||+++|.||||++|| ..+||+||+++|++|+++|+.+|+++|++.|.++|||||+++||++||..|||++|.
T Consensus 3 ~~LP~a~V~Riik~~lg------~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~ 76 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIG------ERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVE 76 (154)
T ss_dssp -CCCHHHHHHHHHTTST------TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTST
T ss_pred ccCCccHHHHHHHhcCC------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCC
Confidence 37999999999999997 589999999999999999999999999999999999999999999999999999874
Q ss_pred H
Q 033230 91 D 91 (124)
Q Consensus 91 ~ 91 (124)
+
T Consensus 77 d 77 (154)
T 1f1e_A 77 D 77 (154)
T ss_dssp T
T ss_pred c
Confidence 3
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.80 E-value=1e-19 Score=118.12 Aligned_cols=66 Identities=27% Similarity=0.342 Sum_probs=63.5
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
.||+++|.||||+. + +.+||+||..++++|+++|+.+|+.+|+..|.++|||||+++||..|++.|
T Consensus 2 ~lP~a~v~Ri~k~~-~------~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-G------AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT-T------CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC-C------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 69999999999999 3 689999999999999999999999999999999999999999999999876
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.79 E-value=1.3e-19 Score=128.70 Aligned_cols=93 Identities=14% Similarity=0.275 Sum_probs=82.7
Q ss_pred ccccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCc
Q 033230 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (124)
Q Consensus 8 ~ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (124)
.+|..||+++|.||+|.. |..+||+|+.+++.+++.+|+..++.+|...|+++|||||+++||..||+..|+.
T Consensus 3 ~~d~~lP~a~I~Ri~r~~-------g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHY-------VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp -------CHHHHHHHHHH-------HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCCCHHHHHHHHHHC-------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 478899999999999999 3689999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHH--Hhhhchh
Q 033230 88 EFVDPLRDSLDGQ--LTFRNWI 107 (124)
Q Consensus 88 ~~~~~l~~~l~~~--~~~~~~~ 107 (124)
.|..++..++++| +|.++..
T Consensus 76 ~~~~~l~~l~~~~lp~E~~~~l 97 (111)
T 3b0c_T 76 TDKMPLHVLVERHLPLEYRKLL 97 (111)
T ss_dssp BTTBCHHHHHHHHSCHHHHHHH
T ss_pred cccccHHHHHHHhCcHHHHHHh
Confidence 9999999999999 8887765
No 8
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.72 E-value=1.3e-17 Score=124.65 Aligned_cols=75 Identities=24% Similarity=0.197 Sum_probs=69.6
Q ss_pred CcccccccccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhh
Q 033230 2 ETEKVVPEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAI 81 (124)
Q Consensus 2 ~~ek~~~ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL 81 (124)
+++-+..+++.||+++|.||||+. |..+||+||++.+++++++|+.+|+++|.+.|.++|||||+++||..||
T Consensus 72 ~~~v~d~~~l~lP~a~V~Ri~k~~-------g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al 144 (154)
T 1f1e_A 72 VEGVEDYDGELFGRATVRRILKRA-------GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAI 144 (154)
T ss_dssp CTTSTTCCSCCCCHHHHHHHHHHT-------TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred cccCCccccccCCccHHHHHHHHc-------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 345566788999999999999999 3689999999999999999999999999999999999999999999999
Q ss_pred hh
Q 033230 82 EE 83 (124)
Q Consensus 82 ~~ 83 (124)
+.
T Consensus 145 ~~ 146 (154)
T 1f1e_A 145 TY 146 (154)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 9
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.67 E-value=1.7e-16 Score=107.42 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=67.5
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCccc
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~ 89 (124)
.||+++|.||++.. |..+||+|+.+.+.++.++|+..|+.+|...|+++|||||+++||..||+.+|+.-|
T Consensus 10 ~ip~~~I~Riar~~-------Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 10 GITKPAIRRLARRG-------GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp SSCHHHHHHHHHHT-------TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred CCCHHHHHHHHHHc-------CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 79999999999988 357999999999999999999999999999999999999999999999999998755
No 10
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.66 E-value=2.3e-16 Score=113.02 Aligned_cols=77 Identities=22% Similarity=0.387 Sum_probs=68.7
Q ss_pred ccccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCc
Q 033230 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (124)
Q Consensus 8 ~ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (124)
..+..||.|.|.||||.. |+ ..+||+||..++++|++.||.+|+..|+..|..++||||+++||..|++..+--
T Consensus 37 ~k~~~lPvaRIkrImK~d-~~-----~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~ 110 (119)
T 4g92_C 37 YKIHQLPLARIKKVMKAD-PE-----VKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMF 110 (119)
T ss_dssp SSCCSSCHHHHHHHHHTS-TT-----CCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGG
T ss_pred cccCCCCHHHHHHHHhhC-Cc-----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchh
Confidence 345579999999999976 43 579999999999999999999999999999999999999999999999887754
Q ss_pred ccH
Q 033230 88 EFV 90 (124)
Q Consensus 88 ~~~ 90 (124)
+|+
T Consensus 111 dFL 113 (119)
T 4g92_C 111 DFL 113 (119)
T ss_dssp GGG
T ss_pred hHH
Confidence 554
No 11
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.65 E-value=4.1e-16 Score=101.78 Aligned_cols=64 Identities=23% Similarity=0.343 Sum_probs=61.4
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhh
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~ 82 (124)
.||+++|.||+|+. |..++|+++..+++++++.|+..|+.+|+..|.++|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~-------g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-------GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-------TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-------CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 79999999999987 46899999999999999999999999999999999999999999999986
No 12
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.64 E-value=4e-16 Score=109.27 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=67.5
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCccc
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~ 89 (124)
.||+++|.||++.. |..+||+|+.+++++++++|+..|+.+|...|++++||||+++||..||+.+|+.-|
T Consensus 28 ~ip~~~I~Rlar~~-------Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 28 GITKPAIRRLARRG-------GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp GSCHHHHHHHHHHT-------TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred CCCHHHHHHHHHHc-------CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 69999999999997 357999999999999999999999999999999999999999999999999998765
No 13
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.63 E-value=7.7e-16 Score=106.51 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=67.8
Q ss_pred ccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCccc
Q 033230 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (124)
Q Consensus 10 d~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~ 89 (124)
+..||.|.|.||||.. |+ ..+||+||..++++|++.|+.+|+..|...|.++|||||+++||..|++..+..+|
T Consensus 17 ~~~lP~arIkrImK~~-~~-----~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~F 90 (97)
T 1n1j_B 17 VQELPLARIKKIMKLD-ED-----VKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDF 90 (97)
T ss_dssp ---CCHHHHHHHHTTS-TT-----CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred CCcCCHHHHHHHHccC-cc-----ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHH
Confidence 4589999999999998 42 46999999999999999999999999999999999999999999999999987777
Q ss_pred HH
Q 033230 90 VD 91 (124)
Q Consensus 90 ~~ 91 (124)
+.
T Consensus 91 L~ 92 (97)
T 1n1j_B 91 LI 92 (97)
T ss_dssp GT
T ss_pred HH
Confidence 53
No 14
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.61 E-value=1.9e-16 Score=116.55 Aligned_cols=91 Identities=14% Similarity=0.216 Sum_probs=60.3
Q ss_pred ccccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccChhHHHHhhhhCCC
Q 033230 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDIC-KESKRQTINAEDVLKAIEEIDF 86 (124)
Q Consensus 8 ~ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a-~~~kRKTI~~eDVl~AL~~lgf 86 (124)
..+..||.|.|.||||.. |+ ..+||++|..++++|++.||.+|+..|+..| ...+||||+++||..|+...+.
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pd-----v~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~ 88 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MD-----TGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKN 88 (140)
T ss_dssp --------------CCSS-SS-----CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCST
T ss_pred ccCCCCCHHHHHHHHhcC-cc-----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCch
Confidence 356689999999999998 53 4699999999999999999999999999999 9999999999999999987665
Q ss_pred cccHH---HHHHHHHHHHhhh
Q 033230 87 TEFVD---PLRDSLDGQLTFR 104 (124)
Q Consensus 87 ~~~~~---~l~~~l~~~~~~~ 104 (124)
-+|+. |.+..+.+|++.+
T Consensus 89 ~dFL~divP~ki~l~~~~~~~ 109 (140)
T 2byk_A 89 LEFLLQIVPQKIRVHQFQEML 109 (140)
T ss_dssp TGGGTTTSCSCC---------
T ss_pred hhhHhccccchhhHHHHHHHH
Confidence 55544 6777888877644
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.58 E-value=5e-15 Score=103.48 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=67.1
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCccc
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~ 89 (124)
.||+++|.||++... ..+||.|+.+.+.++.+.|+..|+.+|...|++++||||+++||..||+.+|++.|
T Consensus 29 gip~~~I~Rlar~~G-------~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 29 GITKPAIRRLARRGG-------VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp GSCHHHHHHHHHHTT-------CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred cCCHHHHHHHHHHcC-------ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 699999999999983 46999999999999999999999999999999999999999999999999998655
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.56 E-value=6.3e-15 Score=103.07 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=63.8
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCccc
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~ 89 (124)
.||+++|.||++.. |..+||.|+.+.+.++.+.|+..|+.+|...|++++||||+++||..||+.+|+..|
T Consensus 29 gip~~~I~Rlar~~-------G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 29 GITKPAIRRLARRG-------GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp -CCHHHHHHHHHHT-------TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHc-------CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 59999999999998 346999999999999999999999999999999999999999999999999997654
No 17
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.39 E-value=1.4e-12 Score=87.49 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=67.4
Q ss_pred ccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 10 d~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
++.+|++++.|++|+...+.. ++.+++.+|..+||++++.|+..|...|+..|.+.||+||.+.||..|..--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~--~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTC--SSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcC--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 468999999999999987654 46899999999999999999999999999999999999999999999987655
No 18
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.37 E-value=8.6e-13 Score=91.44 Aligned_cols=76 Identities=11% Similarity=0.187 Sum_probs=58.8
Q ss_pred ccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCccc
Q 033230 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEF 89 (124)
Q Consensus 10 d~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~ 89 (124)
...||.+.|.||||.. | + ..+||.+|..++.++++.|+.+|+..|...|.+.|||||+++||..|++.-+.-+|
T Consensus 9 ~~~fPvaRIkrimK~~-~----~-~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 9 NARFPPARIKKIMQTD-E----E-IGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp -CCCCHHHHHHHHTTS-T----T-CCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred CCCCChHHHHHHHHcC-c----c-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 4689999999999986 2 1 36999999999999999999999999999999999999999999999988765555
Q ss_pred HH
Q 033230 90 VD 91 (124)
Q Consensus 90 ~~ 91 (124)
+.
T Consensus 83 L~ 84 (98)
T 1jfi_A 83 NK 84 (98)
T ss_dssp --
T ss_pred HH
Confidence 43
No 19
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.30 E-value=3.4e-12 Score=86.45 Aligned_cols=75 Identities=23% Similarity=0.173 Sum_probs=66.4
Q ss_pred cccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 11 ~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
+.+|++++.|++|+...+..++.+.+++.+|..+||++++.|+..|...|+..|.+.||+||.++||..|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 478999999999999754332236899999999999999999999999999999999999999999999976554
No 20
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.22 E-value=2.6e-11 Score=84.76 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=62.5
Q ss_pred ccccccchhHHHHHHhccccCCCCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhh
Q 033230 8 PEAEELPKTIVRRVVKDKLHNCSPD-TDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (124)
Q Consensus 8 ~ed~~LP~A~I~RI~K~~Lp~~~~d-~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~ 82 (124)
+.++.+|++++.|++++...+..++ .+.+++.+|..+||++++.|+..|...|+..|.+.||+||.+.||..|..
T Consensus 23 st~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 23 STDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 3578899999999999998765432 26899999999999999999999999999999999999999999998863
No 21
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=99.18 E-value=4.6e-11 Score=89.25 Aligned_cols=78 Identities=22% Similarity=0.164 Sum_probs=68.7
Q ss_pred ccccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 8 ~ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
..++.||++.+.||+++...+..++.+.+++.+|..+||++++.|+..|...|+..|.+.||+||.+.||..|..--|
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg 150 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 150 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcc
Confidence 457899999999999999876554346899999999999999999999999999999999999999999999975433
No 22
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=99.14 E-value=4.2e-11 Score=88.14 Aligned_cols=79 Identities=22% Similarity=0.171 Sum_probs=68.1
Q ss_pred ccccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCC
Q 033230 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDF 86 (124)
Q Consensus 8 ~ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf 86 (124)
..++.||++++.||+++...+..++.+.+++.+|..+||++++.|+..|...|+..|.+.||+||.+.||..|..--|.
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred ccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 4578999999999999997543222368999999999999999999999999999999999999999999999876554
No 23
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=99.10 E-value=1.2e-10 Score=85.45 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=68.2
Q ss_pred ccccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 8 PEAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 8 ~ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
..++.||++++.||+++...+.. ++.+++.+|..+||++++.|+..|...|+..|.+.||+||.+.||..|..--|
T Consensus 58 st~lLIpk~PF~RLVREI~~~~~--~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 58 STELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp CCSCCSCHHHHHHHHHHHHHHHC--TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred chhhhhccchHHHHHHHHHHHhh--hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 35789999999999999976443 36899999999999999999999999999999999999999999999976544
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.05 E-value=8.4e-10 Score=72.63 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=61.6
Q ss_pred cccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhh
Q 033230 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (124)
Q Consensus 11 ~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~ 82 (124)
..||.++|.+|+++. |-.++|.|+...|.+-++.-+..|+.+|.+.+.+.||||++++||-.||+
T Consensus 5 s~lp~~~v~~iaes~-------Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESI-------GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHT-------TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 479999999999998 45699999999999999999999999999999999999999999999985
No 25
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.99 E-value=1.1e-09 Score=78.91 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=55.3
Q ss_pred ccchhHHHHHHhccccCCCC-CCcchhhHHHHHHHHHHHHHHHH------------------------------------
Q 033230 12 ELPKTIVRRVVKDKLHNCSP-DTDISVHKDALLAFCESARIFIH------------------------------------ 54 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~-d~~~~ISkdA~~al~~~a~~FI~------------------------------------ 54 (124)
.+|+.+..|++++...+..+ +++.+++.+|..+||++++.|+.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 36888888888876654332 12456666666666666655554
Q ss_pred --HHHHHHHHHHHhcCCCccChhHHHHhhhhCCCc
Q 033230 55 --YLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (124)
Q Consensus 55 --~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (124)
.|...|...+++.|||||+++||.-||+..|-.
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ 115 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRT 115 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCc
Confidence 444788899999999999999999999999854
No 26
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.98 E-value=1.3e-09 Score=77.74 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=58.8
Q ss_pred HHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 17 IVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 17 ~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
+|.||+++...+ .++.+|+++..+|.+.+..|+..|+..+...|++.|||||+++||..+++..
T Consensus 32 ~V~rIvke~gae----r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~ 95 (113)
T 4dra_A 32 TVGCLCEEVALD----KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS 95 (113)
T ss_dssp HHHHHHHHHHHH----HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHH----cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC
Confidence 689999999642 2567999999999999999999999999999999999999999999999875
No 27
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.88 E-value=5.3e-09 Score=71.79 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=58.9
Q ss_pred HHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 17 IVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 17 ~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
+|.+|+.+.++. +++.+|+++..+|.+.+..++..++..+...|+|+|||||+++||..+++..
T Consensus 17 ~V~ki~~e~~~~----~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 17 RVEERLQQVLSS----EDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHSCS----SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHh----cCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 578999999763 3589999999999999999999999999999999999999999999998774
No 28
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.85 E-value=7.2e-09 Score=73.12 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=64.2
Q ss_pred HHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCcccHHHHHHH
Q 033230 17 IVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDS 96 (124)
Q Consensus 17 ~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~ 96 (124)
+|.||+++.... .+.++|+++..+|.+.+..|+..|+..|...|+|.|||||+++||..|++... .....|+++
T Consensus 24 ~V~rI~~~~g~~----~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~--~l~~~l~~~ 97 (107)
T 3b0b_B 24 TTGCLCQDVAED----KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSN--SLLKYITQK 97 (107)
T ss_dssp HHHHHHHHHHHH----HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCH--HHHHHHHHH
T ss_pred HHHHHHHHHhhh----cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCH--HHHHHHHHH
Confidence 589999988532 24799999999999999999999999999999999999999999999998853 334444444
Q ss_pred HHH
Q 033230 97 LDG 99 (124)
Q Consensus 97 l~~ 99 (124)
.++
T Consensus 98 ~~e 100 (107)
T 3b0b_B 98 SDE 100 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 29
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.82 E-value=9.7e-09 Score=75.53 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=58.8
Q ss_pred HHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 17 IVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 17 ~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
+|.||+++.... .++.+|.++..+|.+.+..|+..|+..+...|+|.|||||+++||..+++..
T Consensus 24 ~VgkIvee~~~~----~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn 87 (140)
T 3vh5_A 24 TTGALAQDVAED----KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (140)
T ss_dssp HHHHHHHHHHHH----HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 578999988653 3689999999999999999999999999999999999999999999999885
No 30
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.78 E-value=2.5e-08 Score=65.20 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=56.7
Q ss_pred hHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 16 A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
..|.||+|+. |-.++|.++...|.+.+..++.-|..+|...|.+.|||||+.+||..|++.
T Consensus 5 ~~i~~iLk~~-------G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKEL-------NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHT-------TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHC-------CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 4688999998 456999999999999999999999999999999999999999999999864
No 31
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.58 E-value=1.6e-07 Score=67.52 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=62.8
Q ss_pred ccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 10 d~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
.+.||.+.|.|+||+.-. ..+||.+|...|..+.+-+...|...|...|.+.+|++|+++||..|++.
T Consensus 21 gL~fPV~ri~R~Lk~~~~------a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNY------AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp TCSSCHHHHHHHHHHTTS------CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CeeccHHHHHHHHHcccc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 578999999999999732 46999999999999999999999999999999999999999999999874
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.55 E-value=2.1e-07 Score=67.43 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=62.9
Q ss_pred ccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 10 d~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
.+.||.+.|.|+||+.-. ..+||.+|...|..+.+-+...|...|...|.+.+|++|+|+||..|+..
T Consensus 23 gLqfPV~rI~R~Lk~~~~------a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNY------AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp TCSSCHHHHHHHHHHTTS------SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ceeccHHHHHHHHHcccc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 578999999999999732 46999999999999999999999999999999999999999999999874
No 33
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.54 E-value=2.1e-07 Score=66.58 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=62.7
Q ss_pred ccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 10 d~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
.+.||.+.|.|+||+.-. ..+||.+|...|..+.+-+...|...|...|.+.||++|+++||..|++.
T Consensus 20 gLqfPV~ri~R~Lk~~~~------a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHP------KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp TCSSCHHHHHHHHHHHSS------SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CccCChHHHHHHHHcCcc------ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 568999999999999832 46999999999999999999999999999999999999999999999874
No 34
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.54 E-value=1.8e-07 Score=67.91 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=63.4
Q ss_pred cccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 9 EAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 9 ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
-.+.||.+.|.|+||+.-. ..+||.+|...|..+.+-+...|...|...|.+.+|++|+++||..|++.
T Consensus 22 agLqfPV~rI~R~Lk~~~~------a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 22 AGLTFPVGRVHRLLRRGNY------AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GTCSSCHHHHHHHHHTTCS------CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeecCHHHHHHHHHcccc------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 4578999999999999732 46999999999999999999999999999999999999999999999874
No 35
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.47 E-value=2.6e-07 Score=72.90 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=67.3
Q ss_pred ccccchhHHHHHHhccccCCCCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 10 AEELPKTIVRRVVKDKLHNCSPD-TDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 10 d~~LP~A~I~RI~K~~Lp~~~~d-~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
-+.+|+.+..|++++..++..+. .+.+++.+|..|||++++.|+..|...++..|.+.||.||.+.|+..|..--|
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 46899999999999998865431 26899999999999999999999999999999999999999999999987665
No 36
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.46 E-value=4.3e-07 Score=65.67 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=62.6
Q ss_pred ccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 10 d~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
.+.||.+.|.|+||+.-. ...+||.+|...|..+.+-+...|...|...|.+.||++|+|+||..|+..
T Consensus 25 gLqfPV~ri~R~Lk~~~~-----a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTT-----SHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp TCSSCHHHHHHHHHHTSC-----SSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHccc-----chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 568999999999999842 125999999999999999999999999999999999999999999999864
No 37
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.46 E-value=4e-07 Score=67.46 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=62.8
Q ss_pred ccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 10 d~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
.+.||.+.|.|+||+.-. ..+|+.+|...|..+.+-+...|...|...|.+.+|++|+|+||..|++.
T Consensus 42 gLqFPVgrI~R~LK~~~~------a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNY------SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp TCSSCHHHHHHHHHHTTS------CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcccc------ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 468999999999999732 46999999999999999999999999999999999999999999999874
No 38
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.4e-07 Score=74.41 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=50.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 33 TDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 33 ~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
|..+||.++.+.+....++|+.-|...|...|++.|||||+++||..||+..|
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 56799999999999999999999999999999999999999999999999876
No 39
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.36 E-value=8.8e-07 Score=63.83 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=59.8
Q ss_pred hHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCc
Q 033230 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (124)
Q Consensus 16 A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (124)
..|+|++|++-| +..||.+|...++.....+..-|+.+|..++..++|+||++.||..|.+-+==+
T Consensus 37 ~YIyKVLKQVhp------d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpG 102 (123)
T 2nqb_D 37 IYIYTVLKQVHP------DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPG 102 (123)
T ss_dssp HHHHHHHHHHCT------TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhCC------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcH
Confidence 568999999977 578999999999999999999999999999999999999999999998655433
No 40
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.32 E-value=1.1e-06 Score=63.48 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=60.2
Q ss_pred hHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCcc
Q 033230 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTE 88 (124)
Q Consensus 16 A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~ 88 (124)
..|+|++|++-| +..||.+|...++.....+..-|+.+|..++..++|+||++.||..|.+-+==++
T Consensus 40 ~YIyKVLKQVhp------d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 106 (126)
T 1tzy_B 40 IYVYKVLKQVHP------DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGE 106 (126)
T ss_dssp HHHHHHHHHHCT------TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCC------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHH
Confidence 469999999977 5789999999999999999999999999999999999999999999986554333
No 41
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.25 E-value=2.1e-06 Score=65.42 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=63.1
Q ss_pred cccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 9 EAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 9 ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
-.+.||.+.|.|+||+.-. ...+|+.+|...|..+.+-+...|...|...|.+.||++|+|+||..|+..
T Consensus 102 agl~fPv~ri~R~lk~~~~-----a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 102 AGLQFPVGRIKRYLKRHAT-----GRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SSCCSCHHHHHHHHHHTTC-----SSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhcCc-----cccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 3578999999999999731 135999999999999999999999999999999999999999999999864
No 42
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=98.09 E-value=1.8e-05 Score=53.49 Aligned_cols=71 Identities=14% Similarity=0.275 Sum_probs=62.8
Q ss_pred ccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 10 d~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
+..+|..+|.||++....+ .+++||+||..++++....|+..-...|...++.++-.+|..+|+-+.+-.|
T Consensus 10 ~~~i~~~li~ril~~~F~~----~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKD----DKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcC----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 4589999999999988753 3799999999999999999999999999999999999999999998876543
No 43
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=98.06 E-value=1.6e-05 Score=53.41 Aligned_cols=72 Identities=21% Similarity=0.342 Sum_probs=63.3
Q ss_pred cccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 9 EAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 9 ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
++-.+|..+|.||++....+ ...||++||..++++....|+..-...|...++.+|-..|..+|+-+.+-.|
T Consensus 5 ~~~~~~~~lI~ril~~~f~~----~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 5 REGGFRKETVERLLRLHFRD----GRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp --CCCCHHHHHHHHHHHCCS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhcc----CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 45689999999999998764 3789999999999999999999999999999999999999999998876544
No 44
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.06 E-value=1.1e-05 Score=61.45 Aligned_cols=63 Identities=16% Similarity=0.284 Sum_probs=58.1
Q ss_pred hHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 16 A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
.-|+|++|++-| +..||.+|...+......+..-|+.+|...+...+|+||+++||..|.+-+
T Consensus 7 ~yi~kvLkqv~p------~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 7 SYIYKVLKQTHP------DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHCS------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHcccCC------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 468999999976 577999999999999999999999999999999999999999999998643
No 45
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=98.02 E-value=2.4e-05 Score=51.99 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=61.6
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
-|++..+..++++.=| +..+..|+.++|.+.|.+||.-+++.|...|++.|-.|+...||...|++
T Consensus 5 vl~k~~L~~Lv~~idp------~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP------NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4789999999999954 68999999999999999999999999999999999999999999988874
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.77 E-value=0.00011 Score=49.99 Aligned_cols=68 Identities=16% Similarity=0.413 Sum_probs=60.8
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccChhHHHHhhhhCCC
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQ-TINAEDVLKAIEEIDF 86 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRK-TI~~eDVl~AL~~lgf 86 (124)
.||++.|.|+|...+ +..+|.+...++.-.+.+|+..|..+|.++..+.+.. .|.|.||-.|.+.|.-
T Consensus 16 ~f~k~~vKrl~~~~~-------~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~~ 84 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT-------GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKS 84 (89)
T ss_dssp CCCHHHHHHHHHHHH-------SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc-------CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Confidence 799999999999997 3578999999999999999999999999999977644 7999999999887653
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0023 Score=43.49 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=42.3
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKE 66 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~ 66 (124)
.+|+.+|.||++....+ .++|||+||..++++....|+..-...|.+..+.
T Consensus 1 ~ip~~llaRIL~~~F~~----~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 1 MLSKEALIKILSQNEGG----NDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCCSHHHHHHHTTTSCS----SCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCC----CCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37999999999977653 4799999999999999999998777777655443
No 48
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.01 E-value=0.25 Score=38.23 Aligned_cols=67 Identities=12% Similarity=0.281 Sum_probs=50.3
Q ss_pred cchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR----IFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 13 LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~----~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
++...+..+++..+.. .+..++.++...+.+.+. -.+..+...|...|...++.+|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~----~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEE----EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4456666666655542 246789999998888775 355556667777888889999999999999986
No 49
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=91.05 E-value=0.66 Score=42.49 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=53.6
Q ss_pred ccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 10 AEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 10 d~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
.+.+|.+.|.|++|... ..||+..|...+....+=....|...|-..|...+++.|++.|+..|+..
T Consensus 102 ~l~~pv~~~~~~l~~~~-------~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEVL-------GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCSSCHHHHHHHHHHHH-------CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CccccHHHHHHHhhccc-------ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 46799999999996665 35999999888876666555666666777788889999999999988854
No 50
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=87.88 E-value=0.91 Score=37.12 Aligned_cols=50 Identities=24% Similarity=0.265 Sum_probs=39.7
Q ss_pred chhhHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 35 ISVHKDALLAFCESA-R---IFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 35 ~~ISkdA~~al~~~a-~---~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
..++.++...+.+.+ . --...+...|...|..+|+.+|+.+||..|+.-+
T Consensus 384 ~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 384 INISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp CCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 467888888887766 1 3456666788889999999999999999998653
No 51
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.46 E-value=2 Score=32.75 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=49.6
Q ss_pred hhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 15 KTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR------IFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 15 ~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~------~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
..-+..+++..+... ..+..++.++...+.+.+. -.+..+...|...|..+++.+|+.+||..|++.+.
T Consensus 203 ~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 203 APQLRDILETRAEEA--FNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHHHHHHHH--BCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 556666666554310 0135678888888887776 45566667788888888999999999999998874
No 52
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=85.37 E-value=1.4 Score=30.11 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 36 ~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
++|..+..+|. .|...|.+.|...|.++|++.||=+-
T Consensus 5 ~~t~~~~~~l~------------~A~~~A~~~~~~~i~~eHlLlaLl~~ 41 (148)
T 1khy_A 5 RLTNKFQLALA------------DAQSLALGHDNQFIEPLHLMSALLNQ 41 (148)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHTTCSSBCHHHHHHHHHTC
T ss_pred hhhHHHHHHHH------------HHHHHHHHcCCCccCHHHHHHHHHcC
Confidence 57888888888 58889999999999999999998443
No 53
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=83.45 E-value=1.5 Score=30.29 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 36 ~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
++|..+..+|. .|.+.|...|...|+++|++.||=+
T Consensus 6 ~~t~~~~~~l~------------~A~~~A~~~~~~~i~~eHLLlaLl~ 41 (146)
T 3fh2_A 6 RFTDRARRVIV------------LAQEEARMLNHNYIGTEHILLGLIH 41 (146)
T ss_dssp GBCHHHHHHHH------------HHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hcCHHHHHHHH------------HHHHHHHHcCCCCchHHHHHHHHHh
Confidence 67888998888 5888899999999999999999854
No 54
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=83.29 E-value=4.3 Score=27.92 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=41.1
Q ss_pred chhHHHHHHhccccCCC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 14 PKTIVRRVVKDKLHNCS-PDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 14 P~A~I~RI~K~~Lp~~~-~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
....+.+-+.+.+...+ +++...+|.++..+|. .|...|...|...|+.+|++.||=+-+
T Consensus 58 d~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~------------~A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 58 TEAYLEGKIVDMEGKGEEISEDIVLSPRSKQILE------------LSGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CHHHHHHHHHHHHCCCSCCCSCCEECHHHHHHHH------------HHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH------------HHHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 33444444444443221 1234678999998888 477889999999999999999986544
No 55
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=82.96 E-value=1.2 Score=27.71 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 53 IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
|..|..+|...|...++..|+.+|+..|++..
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 55566788888888999999999999999753
No 56
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=81.33 E-value=1.3 Score=30.37 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 36 ~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
+++..+..+|+ .|...|.+.|...|.++|++.||=+
T Consensus 5 ~~t~~~~~al~------------~A~~~A~~~~h~~i~~eHlLlaLl~ 40 (150)
T 2y1q_A 5 RFTERAQKVLA------------LAQEEALRLGHNNIGTEHILLGLVR 40 (150)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hhCHHHHHHHH------------HHHHHHHHcCCCCccHHHHHHHHHh
Confidence 67888888888 5888999999999999999999843
No 57
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=81.16 E-value=1.7 Score=30.12 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=33.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 35 ISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 35 ~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
-++|..++.+|. .|...|.+.|...|.++|++.||=+-
T Consensus 6 ~~~T~~a~~~l~------------~A~~~A~~~~~~~i~~eHLLlaLl~~ 43 (145)
T 3fes_A 6 NRFTQRAKKAID------------LAFESAKSLGHNIVGSEHILLGLLRE 43 (145)
T ss_dssp CCBCHHHHHHHH------------HHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cccCHHHHHHHH------------HHHHHHHHcCCCCccHHHHHHHHHhC
Confidence 478999999998 58888999999999999999998543
No 58
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.24 E-value=4.7 Score=30.52 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=50.7
Q ss_pred cchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCC
Q 033230 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR------IFIHYLSATANDICKESKRQTINAEDVLKAIEEIDF 86 (124)
Q Consensus 13 LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~------~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf 86 (124)
++..-+..+++..+... .....++.++...+.+.+. -.+..+...|...+..+++.+|+.+||..|++++..
T Consensus 197 l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 197 YNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp CCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 34455666666543210 0134678888888877665 234456677888888889999999999999988754
Q ss_pred ccc
Q 033230 87 TEF 89 (124)
Q Consensus 87 ~~~ 89 (124)
+.+
T Consensus 275 ~~~ 277 (386)
T 2qby_A 275 DRV 277 (386)
T ss_dssp HHH
T ss_pred chH
Confidence 433
No 59
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=80.15 E-value=9.3 Score=26.15 Aligned_cols=60 Identities=15% Similarity=0.054 Sum_probs=41.5
Q ss_pred cchhHHHHHHhccccCCC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 13 LPKTIVRRVVKDKLHNCS--PDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 13 LP~A~I~RI~K~~Lp~~~--~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
+....+.+.+.+.++..+ +++...+|..+..+|.+ |...|...|...|+.+|++.||=+-
T Consensus 56 v~~~~l~~~l~~~l~~~~~~~~~~~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 56 ISLDAVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp CCHHHHHHHHHHHHCCCSCCCCSCCCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCCcCCCcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 334444454544443322 12346789999999884 7778889999999999999998543
No 60
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=79.73 E-value=11 Score=28.57 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=54.2
Q ss_pred cchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCccChhHHHHh
Q 033230 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESA------------RIFIHYLSATANDICKESKRQTINAEDVLKA 80 (124)
Q Consensus 13 LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a------------~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~A 80 (124)
++...+..+++..+.... ....++.++...+.+.+ --++..+...|...|..+++.+|+.+||..|
T Consensus 193 l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~ 270 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGL--AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKS 270 (389)
T ss_dssp CBHHHHHHHHHHHHHHHB--CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 344566666666553100 02368889988888777 2345666677888888889999999999999
Q ss_pred hhhCCCcccHHHHH
Q 033230 81 IEEIDFTEFVDPLR 94 (124)
Q Consensus 81 L~~lgf~~~~~~l~ 94 (124)
++....+.+...++
T Consensus 271 ~~~~~~~~~~~~l~ 284 (389)
T 1fnn_A 271 SKEVLFGISEEVLI 284 (389)
T ss_dssp HHHHSCCCCHHHHH
T ss_pred HHHHhhhhHHHHHH
Confidence 98876554444433
No 61
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=79.31 E-value=1.6 Score=29.62 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhh
Q 033230 37 VHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAI 81 (124)
Q Consensus 37 ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL 81 (124)
+|..+..+|+ .|...|.+.|...|.++|++.||
T Consensus 2 ~t~~~~~~l~------------~A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLN------------MAFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHH------------HHHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHH------------HHHHHHHHcCCCCcCHHHHHHHH
Confidence 5667777776 58888999999999999999998
No 62
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=78.28 E-value=2.7 Score=26.54 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 58 ATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 58 ~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
.+|...|.+.++..|+.+|+..|++..-
T Consensus 42 ~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 42 QEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 4666778888899999999999998874
No 63
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=77.30 E-value=2.7 Score=27.00 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCc
Q 033230 53 IHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (124)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (124)
|.-|..+|...|.+.++..|+.+|+..|++.+-.+
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 34444567777888889999999999999986544
No 64
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=76.26 E-value=7.1 Score=29.52 Aligned_cols=52 Identities=8% Similarity=-0.010 Sum_probs=40.5
Q ss_pred cchhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 34 DISVHKDALLAFCESARI-------FIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 34 ~~~ISkdA~~al~~~a~~-------FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
+..+|.++...|.+.+.- -+..+...|...|...++.+|+.+||..|+...-
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMAL 323 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHH
Confidence 457899999988876543 3455666777888889999999999999987543
No 65
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=76.19 E-value=6.8 Score=26.37 Aligned_cols=38 Identities=21% Similarity=0.093 Sum_probs=32.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 34 DISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 34 ~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
...+|..+..+|. .|...|...|...|+.+|++.||=.
T Consensus 77 ~~~~s~~~~~~l~------------~A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 77 DTQPTLSFQRVLQ------------RAVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp SCEECHHHHHHHH------------HHHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred CCCCCHHHHHHHH------------HHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4578888888887 5788888889999999999999955
No 66
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=75.62 E-value=2.5 Score=26.52 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 55 YLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 55 ~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
.|..+|...|.+.++.+|+.+|+..|++..-
T Consensus 42 ~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 42 SICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 3445777888888999999999999998764
No 67
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=74.71 E-value=7.8 Score=26.30 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=36.8
Q ss_pred hhHHHHHHhccccCCCC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 15 KTIVRRVVKDKLHNCSP-DTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 15 ~A~I~RI~K~~Lp~~~~-d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
...+.+-+.+.+...+. .+...+|..+..+|. .|...|...|...|+.+|++.||=.
T Consensus 57 ~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vL~------------~A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 57 SEKIQKEVESLIGRAQEMSQTIHYTPRAKKVIE------------LSMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp HHHHHHHHHHHHCCC-----CCEECHHHHHHHH------------HHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcccccCCCCHHHHHHHH------------HHHHHHHHcCCCeecHHHHHHHHHh
Confidence 34444444444432211 123567777777776 5778888889999999999999853
No 68
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=73.87 E-value=14 Score=31.33 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCcccHHHHHHHHHHH
Q 033230 35 ISVHKDALLAFCESAR-------------IFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDGQ 100 (124)
Q Consensus 35 ~~ISkdA~~al~~~a~-------------~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~~~ 100 (124)
..++.+|...|.+.+. --+.-+...|..+|..+++.+|+.+||..|++.-.. -....++.++...
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~~~-i~~~~~e~~l~~~ 390 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMAKP-LEKQLADWYIERK 390 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhhhh-hHHHHHHHHhccc
Confidence 4689999998888653 344556667889999999999999999999965321 1223444555543
No 69
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=73.61 E-value=10 Score=27.42 Aligned_cols=40 Identities=8% Similarity=-0.073 Sum_probs=34.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccChhHHHHhhhhCC
Q 033230 34 DISVHKDALLAFCESARIFIHYLSATANDICK-ESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 34 ~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~-~~kRKTI~~eDVl~AL~~lg 85 (124)
...+|.++..+|+ .|...|. +-|...|+.+|++.||=+-+
T Consensus 96 ~~~~S~~l~~vL~------------~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 96 YPAFSPLLVELLQ------------EAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp CCEECHHHHHHHH------------HHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred CCCcCHHHHHHHH------------HHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 4679999999998 5888999 99999999999999985433
No 70
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=71.32 E-value=4.8 Score=25.87 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 56 LSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 56 lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
|..+|...|.+.++..|+.+|+..|++..
T Consensus 53 l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 53 VCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44577777888889999999999999763
No 71
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=70.02 E-value=9.2 Score=27.92 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=59.2
Q ss_pred cchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCcccHHH
Q 033230 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDP 92 (124)
Q Consensus 13 LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~~ 92 (124)
+|-+-+.|+.+.+. +.-|-|+-..-+....+.=+.-|.-.|...|+.+||-+|.+.|+= .-..
T Consensus 3 m~~~~~e~lFR~aa-------~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLP----------ITkG 65 (148)
T 1wwi_A 3 MKVAEFERLFRQAA-------GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLP----------IAKG 65 (148)
T ss_dssp SCHHHHHHHHHHHH-------CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSC----------CCHH
T ss_pred CCHHHHHHHHHHHh-------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC----------ccHH
Confidence 57788999999996 466778888888889999999999999999999999999997752 2245
Q ss_pred HHHHHHHHHhhh
Q 033230 93 LRDSLDGQLTFR 104 (124)
Q Consensus 93 l~~~l~~~~~~~ 104 (124)
+++.+..|++..
T Consensus 66 lqesi~~F~~ld 77 (148)
T 1wwi_A 66 LQETLQEFRRMD 77 (148)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHcc
Confidence 566666666553
No 72
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=69.30 E-value=4.3 Score=29.40 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 36 ~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
++|..++.+|+ .|.+.|...|...|.++|++.||=+-
T Consensus 24 kfT~~a~~aL~------------~A~~~A~~~~h~~I~~EHLLlaLL~~ 60 (171)
T 3zri_A 24 KLNAQSKLALE------------QAASLCIERQHPEVTLEHYLDVLLDN 60 (171)
T ss_dssp HBCHHHHHHHH------------HHHHHHHHHTCSEECHHHHHHHHTTC
T ss_pred HcCHHHHHHHH------------HHHHHHHHcCCCcccHHHHHHHHHHc
Confidence 56777888877 57888999999999999999998544
No 73
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=66.56 E-value=3.8 Score=25.86 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=37.9
Q ss_pred cchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 34 DISVHKDALLAFCESARIFIH-YLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 34 ~~~ISkdA~~al~~~a~~FI~-~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
++.++.||...|.+.= -|+- -+-...-..|.+.|...||.+.+..|-+.+|
T Consensus 3 ~l~Wt~EAe~~LkkIP-~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGKVP-FFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 4678889988888743 3433 3334556778899999999999999977665
No 74
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=66.34 E-value=14 Score=24.85 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=28.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhh
Q 033230 35 ISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (124)
Q Consensus 35 ~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~ 82 (124)
..+|..+..+|. .|...|...|...|+.+|++.||=
T Consensus 81 ~~~s~~~~~vl~------------~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 81 VQPSQDLVRVLN------------LCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp -CBCHHHHHHHH------------HHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cCcCHHHHHHHH------------HHHHHHHHcCCCeecHHHHHHHHH
Confidence 457777777776 577788888999999999999986
No 75
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=65.68 E-value=13 Score=28.40 Aligned_cols=69 Identities=13% Similarity=0.030 Sum_probs=44.8
Q ss_pred cchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR------IFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 13 LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~------~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
+...-+..+++..+...- .+..++.++...+.+.+. -.+..+...|...|. +..+|+.+||..|++++.
T Consensus 197 l~~~~~~~il~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGL--IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTS--CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc--ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 445666677766442100 135678888888777665 123344555666665 678999999999998874
No 76
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=64.59 E-value=17 Score=28.14 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=37.2
Q ss_pred chhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCc
Q 033230 35 ISVHKDALLAFCESAR---IFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (124)
Q Consensus 35 ~~ISkdA~~al~~~a~---~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (124)
..++.++...|.+.+. -.+.-+...+.+.|...++..|+.++|..|++.++.+
T Consensus 198 ~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 198 VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 4577777776665421 2334445566677777788899999999999988764
No 77
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=63.87 E-value=8.2 Score=28.81 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=61.7
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCcccHH
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVD 91 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~ 91 (124)
-+|-+-+.|+.+.+. +.-|-|+-..-+....+.=+.-|.-.|...|+.+||-+|.+.|+= .-.
T Consensus 26 vmg~~kferlFR~aa-------gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLP----------ITK 88 (171)
T 1r4v_A 26 PKGFDKLDHYFRTEL-------DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLN----------ITK 88 (171)
T ss_dssp CTTHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSC----------CCH
T ss_pred cCChHHHHHHHHHHh-------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC----------ccH
Confidence 678899999999997 466778888889999999999999999999999999999997752 225
Q ss_pred HHHHHHHHHHhhh
Q 033230 92 PLRDSLDGQLTFR 104 (124)
Q Consensus 92 ~l~~~l~~~~~~~ 104 (124)
.+++.+..|++..
T Consensus 89 GlqEsi~~Fr~ld 101 (171)
T 1r4v_A 89 ALEEHIKNFQKIE 101 (171)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcc
Confidence 5666666666553
No 78
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=62.96 E-value=39 Score=25.47 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=35.8
Q ss_pred cchhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 34 DISVHKDALLAFCESARIF-----------------------IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 34 ~~~ISkdA~~al~~~a~~F-----------------------I~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
++.++.++...+.+.+... ...+...|...|.-.||..|+++||..|+...
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4567777777776644321 22345566677888899999999999988754
No 79
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=60.83 E-value=8.6 Score=28.36 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 52 FIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 52 FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
-|..+...|...|...++.+|+.+|+..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 355567788888889999999999999999765
No 80
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=60.79 E-value=4.4 Score=25.50 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 35 ISVHKDALLAFCESARIFIH-YLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 35 ~~ISkdA~~al~~~a~~FI~-~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
+.++.||...|.+.= -|+- -+-...-..|.+.|...||.+.+..|-+.+|
T Consensus 3 l~Wt~EAe~~LkkIP-~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 53 (62)
T 2l09_A 3 LRWTSEAKTKLKNIP-FFARSQAKARIEQLARQAEQDIVTPELVEQARLEFG 53 (62)
T ss_dssp CEECHHHHHHHHTSC-GGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHHh
Confidence 567777777777632 2332 2334455778899999999999998876554
No 81
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=59.71 E-value=9.8 Score=31.18 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 36 ~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
++|..+..+|. .|...|.+.|...|+++|++.||=.-+
T Consensus 5 ~ft~~a~~al~------------~A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 5 RFTERAQKVLA------------LAQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHH------------HHHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 67888988888 578889999999999999999986654
No 82
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=58.33 E-value=14 Score=25.13 Aligned_cols=64 Identities=9% Similarity=0.153 Sum_probs=38.3
Q ss_pred cchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhh
Q 033230 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (124)
Q Consensus 13 LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~ 82 (124)
++..-+..+++..+.. .+..++.++...+.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4455566666655431 13457888877777655433333444444444333 6899999998875
No 83
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=58.30 E-value=8.1 Score=24.14 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=19.8
Q ss_pred cChhHHHHhhhhCCCcccHHHHH
Q 033230 72 INAEDVLKAIEEIDFTEFVDPLR 94 (124)
Q Consensus 72 I~~eDVl~AL~~lgf~~~~~~l~ 94 (124)
=+++||..-|+.+|+++|.+...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 37899999999999999987654
No 84
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=57.57 E-value=20 Score=24.97 Aligned_cols=61 Identities=5% Similarity=0.019 Sum_probs=35.1
Q ss_pred hHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccChhHHHHhhh
Q 033230 16 TIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR----IFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (124)
Q Consensus 16 A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~----~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~ 82 (124)
..+.++++..+.. .+..++.++...+.+.+. .....| ..|...|..++ ++|+.+||..+|+
T Consensus 177 ~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~r~l~~~l-~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 177 DEKLAALQRRAAM----RGLQLPEDVGRFLLNRMARDLRTLFDVL-DRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGHHHHHHHHHHH----TTCCCCHHHHHHHHHHTTTCHHHHHHHH-HHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccCCHHHHHHHH-HHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 4444455444431 135678888877776543 223332 33444454444 5699999998875
No 85
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=57.43 E-value=15 Score=25.17 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=40.0
Q ss_pred cchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhh
Q 033230 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (124)
Q Consensus 13 LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~ 82 (124)
++..-+..+++..+.. .+..++.++...|.+.+.=-...+-......+ ..++++|+.+||..++.
T Consensus 185 l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~-~~~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 185 LDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAMLG 249 (250)
T ss_dssp CCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-TTTTSSBCHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hccCceecHHHHHHHhC
Confidence 4455666666655532 13567888887777766544444444443333 34456999999988863
No 86
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=55.02 E-value=14 Score=26.92 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 53 IHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
+..+...|...|...++.+|+.+|+..|+++.-
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 334556677778888999999999999998754
No 87
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=53.40 E-value=14 Score=32.04 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 36 ~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
++|..++.+|. .|.+.|.+.|...|+++|++.||=.-+
T Consensus 5 ~~t~~a~~~l~------------~A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (758)
T 3pxi_A 5 RFTERAQKVLA------------LAQEEALRLGHNNIGTEHILLGLVREG 42 (758)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHH------------HHHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 57888998888 578889999999999999999986543
No 88
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=53.23 E-value=11 Score=23.81 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=20.9
Q ss_pred ccChhHHHHhhhhCCCcccHHHHHH
Q 033230 71 TINAEDVLKAIEEIDFTEFVDPLRD 95 (124)
Q Consensus 71 TI~~eDVl~AL~~lgf~~~~~~l~~ 95 (124)
.=+++||..-|+.+|+++|.+...+
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~~ 33 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFTR 33 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 4578999999999999999876543
No 89
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=51.94 E-value=27 Score=25.78 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC------------CCccChhHHHHhhhhCCCcccHHHHH
Q 033230 36 SVHKDALLAFCESARI----FIHYLSATANDICKESK------------RQTINAEDVLKAIEEIDFTEFVDPLR 94 (124)
Q Consensus 36 ~ISkdA~~al~~~a~~----FI~~lt~~A~~~a~~~k------------RKTI~~eDVl~AL~~lgf~~~~~~l~ 94 (124)
.++.++...+.+.+.- =+..|...|...+.++. ..+|+.+|+..|++...-.-..+.++
T Consensus 208 ~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~ 282 (297)
T 3b9p_A 208 PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLN 282 (297)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHH
Confidence 4566666666654433 23344455555555443 36899999999999877554433333
No 90
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=49.46 E-value=41 Score=27.41 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=42.9
Q ss_pred ccchhHHHHHHhccccCCCC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 12 ELPKTIVRRVVKDKLHNCSP-DTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~-d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
.+....+.+-+...++..++ .+...+|..+..+|. .|...|..-|...|+.+|++.||=.-
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~~~~~~S~~~~~vL~------------~A~~~A~~~g~~~I~teHLLlaLl~~ 115 (468)
T 3pxg_A 54 GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIE------------LSMDEARKLGHSYVGTEHILLGLIRE 115 (468)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHH------------HHHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHH------------HHHHHHHHcCCCeecHHHHHHHHHhc
Confidence 34445555666666543221 123568999998888 47788888999999999999998544
No 91
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.70 E-value=16 Score=30.38 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 53 IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
|..|..+|...|.++++..|+.+|+..|+++.
T Consensus 391 i~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 391 LKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 55566778888888999999999999999865
No 92
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=47.38 E-value=42 Score=28.93 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=43.5
Q ss_pred ccchhHHHHHHhccccCCCC-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 12 ELPKTIVRRVVKDKLHNCSP-DTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~-d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
.+....+.+-+.+.++..++ .+...+|..+..+|. .|...|..-|...|+.+|++.||=.-
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~------------~A~~~A~~~~~~~I~~ehlLlall~~ 115 (758)
T 3pxi_A 54 GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIE------------LSMDEARKLGHSYVGTEHILLGLIRE 115 (758)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHH------------HHHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHH------------HHHHHHHHcCCCcccHHHHHHHHHhc
Confidence 34445566666666554321 134678999998887 47788889999999999999998544
No 93
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.22 E-value=20 Score=29.85 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 53 IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
|..|..+|...|.++++..|+.+|+..|++..
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45566778888889999999999999999753
No 94
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=47.07 E-value=23 Score=21.50 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=28.3
Q ss_pred cccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHH
Q 033230 9 EAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIF 52 (124)
Q Consensus 9 ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~F 52 (124)
+...++.++|.|++...- +...||.+.+.-|.+++.++
T Consensus 8 ~~aGVS~sTVSrvLng~~------~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKA------KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HHHTSCHHHHHHHHHTCT------TTTTCTTHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHcCCC------CCCCCCHHHHHHHHHHHHHh
Confidence 345788999999998651 12378999999998877654
No 95
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.71 E-value=20 Score=30.09 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 53 IHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
|..|..+|...|.+++|..|+.+|+..|++.
T Consensus 392 I~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 392 IQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 5566678888888999999999999999875
No 96
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=45.44 E-value=36 Score=29.20 Aligned_cols=39 Identities=21% Similarity=0.072 Sum_probs=30.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 34 DISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 34 ~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
...+|..++.+|++ |...|...|...|+.+|++.||=.-
T Consensus 77 ~~~~s~~~~~vl~~------------A~~~a~~~~~~~I~~ehlLlall~~ 115 (758)
T 1r6b_X 77 DTQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (758)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHTTC
T ss_pred CCCcCHHHHHHHHH------------HHHHHHHcCCCEeeHHHHHHHHhcc
Confidence 45678888888874 6677777789999999999987543
No 97
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.43 E-value=22 Score=29.46 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 53 IHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
|..|..+|...|.+++|..|+.+|+..|+++
T Consensus 358 i~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 358 VKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 4556677888888999999999999999975
No 98
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.28 E-value=21 Score=30.14 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 53 IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
|.-|..+|...|.+++|+.|+.+|+..|+++.
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 45566778888889999999999999999764
No 99
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=42.41 E-value=93 Score=23.64 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=47.2
Q ss_pred cchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR---------IFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 13 LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~---------~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
|+..-+..+++..+.... ....++.++...+.+.+. -++..+...|...+...++.+|+.+||..++.+
T Consensus 215 l~~~e~~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGL--RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp CCHHHHHHHHHHHHHHHB--CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC--CCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 444556666654332000 013467888877777666 367777777888888888999999999988876
Q ss_pred CC
Q 033230 84 ID 85 (124)
Q Consensus 84 lg 85 (124)
+.
T Consensus 293 ~~ 294 (412)
T 1w5s_A 293 NE 294 (412)
T ss_dssp C-
T ss_pred Hh
Confidence 53
No 100
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=42.37 E-value=21 Score=31.50 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhh
Q 033230 36 SVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (124)
Q Consensus 36 ~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~ 82 (124)
++|..+..+|. .|...|.+.|...|+++|++.||=
T Consensus 5 ~~t~~a~~al~------------~A~~~A~~~~h~~i~~eHLLlaLl 39 (854)
T 1qvr_A 5 RWTQAAREALA------------QAQVLAQRMKHQAIDLPHLWAVLL 39 (854)
T ss_dssp CSCHHHHHHHH------------HHHHHHHHTTCSEECHHHHHHHHC
T ss_pred hhCHHHHHHHH------------HHHHHHHHcCCCCccHHHHHHHHH
Confidence 57888988888 588899999999999999999984
No 101
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=42.14 E-value=27 Score=25.34 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCccChhHHHHhhh
Q 033230 56 LSATANDICKESKRQTINAEDVLKAIE 82 (124)
Q Consensus 56 lt~~A~~~a~~~kRKTI~~eDVl~AL~ 82 (124)
+..+|...|...++.+|+.+|+..|++
T Consensus 228 ~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 228 LLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 334566667778889999999998873
No 102
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=41.41 E-value=74 Score=20.94 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=32.4
Q ss_pred HhcCCCccChhHHHHhhhhCCCcccHHHHHHHHHHHHhhhchhee
Q 033230 65 KESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDGQLTFRNWIFI 109 (124)
Q Consensus 65 ~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~~~~~~~~~~~~ 109 (124)
.+.--|||.|.||-.||..-++-.+.+++...--. ....+.|.|
T Consensus 18 ~R~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~-La~~G~v~I 61 (85)
T 2ns0_A 18 ARADSASICPSDVARAVAPDDWRPLMEPVREAAGR-LADAGEVEV 61 (85)
T ss_dssp HSCTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHH-HHHTTSEEE
T ss_pred HhCCCCCcCHHHHHHHhCchhHHHHhHHHHHHHHH-HHHCCcEEE
Confidence 34455999999999999888899999998887655 333333443
No 103
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=40.05 E-value=74 Score=27.28 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 56 LSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 56 lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
|-..|...|.-.+|..|+++||..|++-+
T Consensus 455 LiRlA~A~A~L~gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 455 VERLAKAHARMRLSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 44667778889999999999999998543
No 104
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=39.23 E-value=31 Score=25.50 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCccChhHHHHhhh
Q 033230 56 LSATANDICKESKRQTINAEDVLKAIE 82 (124)
Q Consensus 56 lt~~A~~~a~~~kRKTI~~eDVl~AL~ 82 (124)
+...|...|...++.+|+.+|+..|++
T Consensus 252 l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 252 LLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 344566667778889999999998873
No 105
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=39.17 E-value=24 Score=30.36 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhh
Q 033230 37 VHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIE 82 (124)
Q Consensus 37 ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~ 82 (124)
+|..+..+|. .|...|.+.|...|+++|++.||=
T Consensus 2 ~t~~a~~~l~------------~A~~~A~~~~h~~i~~eHLLlaLl 35 (758)
T 1r6b_X 2 LNQELELSLN------------MAFARAREHRHEFMTVEHLLLALL 35 (758)
T ss_dssp BCHHHHHHHH------------HHHHHHHHTTBSEECHHHHHHHHT
T ss_pred CCHHHHHHHH------------HHHHHHHHcCCCCccHHHHHHHHH
Confidence 4666777776 588899999999999999999973
No 106
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=39.07 E-value=92 Score=21.48 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=41.0
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCcccH
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIF-IHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFV 90 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~F-I~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~~ 90 (124)
.|....+.|+-+-.- ..++.+.+...+....+.- +..| ..+....-.++--+|+.+++..+|..+|+.--.
T Consensus 21 ~l~~~~~~~l~~f~~-------~~~lk~~~l~~i~~~l~~~e~~~l-~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~ 92 (197)
T 3pm8_A 21 ELSSTLLKNLKNFKK-------ENELKKIALTIIAKHLCDVEINNL-RNIFIALDVDNSGTLSSQEILDGLKKIGYQKIP 92 (197)
T ss_dssp CCCTTHHHHHHHTTT-------SCHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCTTCSSEECHHHHHHHHHHHC----C
T ss_pred CCCHHHHHHHHHHHH-------ccHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCH
Confidence 345556666544331 2355555554444322111 1111 233444446777899999999999999875333
Q ss_pred HHHHHHHH
Q 033230 91 DPLRDSLD 98 (124)
Q Consensus 91 ~~l~~~l~ 98 (124)
+.+...++
T Consensus 93 ~~~~~l~~ 100 (197)
T 3pm8_A 93 PDIHQVLR 100 (197)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 107
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=38.93 E-value=52 Score=24.73 Aligned_cols=70 Identities=10% Similarity=0.168 Sum_probs=45.3
Q ss_pred chhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCc
Q 033230 14 PKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR---IFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT 87 (124)
Q Consensus 14 P~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~---~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (124)
+..-+..+++..+.. .+..++.++...+.+.+. -.+..+...+...|...++.+|+.+|+..++..++.+
T Consensus 185 ~~~e~~~il~~~~~~----~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 185 KDSELALILQKAALK----LNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp CHHHHHHHHHHHHHH----TTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 345555555555432 135678888887776432 2333444556667777888899999999999887754
No 108
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=38.66 E-value=24 Score=22.84 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=20.6
Q ss_pred ccChhHHHHhhhhC-CCcccHHHHHH
Q 033230 71 TINAEDVLKAIEEI-DFTEFVDPLRD 95 (124)
Q Consensus 71 TI~~eDVl~AL~~l-gf~~~~~~l~~ 95 (124)
.=+++||..-|+.+ ||++|.+..++
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~~ 41 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFIQ 41 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHHH
Confidence 35889999999999 99999876553
No 109
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=38.56 E-value=42 Score=24.87 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=44.4
Q ss_pred cchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCC
Q 033230 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR---IFIHYLSATANDICKESKRQTINAEDVLKAIEEIDF 86 (124)
Q Consensus 13 LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~---~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf 86 (124)
+|..-+..+++..+.. .+..++.++...|.+.+. -.+..+...+...|...+..+|+.+|+..+++.++.
T Consensus 168 ~~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 240 (324)
T 1hqc_A 168 YTPEELAQGVMRDARL----LGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL 240 (324)
T ss_dssp CCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 4555666666666543 145688888888877642 223333344444455566788999999988877654
No 110
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=38.32 E-value=1.4e+02 Score=23.20 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=42.9
Q ss_pred hhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCccChhHHH
Q 033230 15 KTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARI----FIHYLSATANDICKES------------KRQTINAEDVL 78 (124)
Q Consensus 15 ~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~----FI~~lt~~A~~~a~~~------------kRKTI~~eDVl 78 (124)
......|++..+.. .+..++.+....|.+.+.- -|..|...|...+.++ +...|+.+|+.
T Consensus 284 ~~~r~~il~~~~~~----~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~ 359 (389)
T 3vfd_A 284 EETRLLLLKNLLCK----QGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFT 359 (389)
T ss_dssp HHHHHHHHHHHHTT----SCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHH
Confidence 34455555555532 1345777777766665433 4445556666555554 45689999999
Q ss_pred HhhhhCCCc
Q 033230 79 KAIEEIDFT 87 (124)
Q Consensus 79 ~AL~~lgf~ 87 (124)
.|++...-.
T Consensus 360 ~al~~~~~s 368 (389)
T 3vfd_A 360 ESLKKIKRS 368 (389)
T ss_dssp HHHHHCCCS
T ss_pred HHHHHcCCC
Confidence 999887543
No 111
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=37.99 E-value=33 Score=25.90 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=38.9
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
.++..-+..+++..+.. .+..++.++...+.+.+.--...+.....+... .+..+|+.+||..++...+
T Consensus 177 ~l~~~~~~~~l~~~~~~----~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~-~~~~~i~~~~v~~~~~~~~ 245 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTLD 245 (373)
T ss_dssp CCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH-HTTTCBCHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcCCcccHHHHHHHhCCCC
Confidence 34556666666655532 135678888877776543333333332222222 2346799999888776554
No 112
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.80 E-value=34 Score=28.29 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 53 IHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
|..|..+|...|.+.+|..|+.+|+..|+..
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 5666778888899999999999999999864
No 113
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=37.75 E-value=9 Score=23.52 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=18.3
Q ss_pred cChhHHHHhhhhCCCcccHHHH
Q 033230 72 INAEDVLKAIEEIDFTEFVDPL 93 (124)
Q Consensus 72 I~~eDVl~AL~~lgf~~~~~~l 93 (124)
=+++||..-|+.+|+++|.+..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999998887654
No 114
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=37.54 E-value=57 Score=18.75 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 033230 36 SVHKDALLAFCESARIFIHYLSATAND 62 (124)
Q Consensus 36 ~ISkdA~~al~~~a~~FI~~lt~~A~~ 62 (124)
.-..|...++.+...+||..+..+|.+
T Consensus 18 ~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 18 NPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 447899999999999999999998875
No 115
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=37.00 E-value=10 Score=27.30 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 53 IHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 53 I~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
|..+...|...|...++.+|+.+|+..|+++.
T Consensus 218 l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 218 IANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 44555667777777888999999999998765
No 116
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=35.77 E-value=1.1e+02 Score=24.86 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=45.9
Q ss_pred ccchhHHHHHHhccccCCCCC---CcchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc--CCCccChhHHHHhhh
Q 033230 12 ELPKTIVRRVVKDKLHNCSPD---TDISVHKDALLAFCESAR----IFIHYLSATANDICKES--KRQTINAEDVLKAIE 82 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d---~~~~ISkdA~~al~~~a~----~FI~~lt~~A~~~a~~~--kRKTI~~eDVl~AL~ 82 (124)
.+|..-+..+++..+...... .+..++.++...|.+.+. .-++.|- .|...+... ++.+|+.+||..++.
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le-~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE-MMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH-HHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH-HHHHhcccccCCCCccCHHHHHHHHh
Confidence 356666777777666531111 246799999998887642 2333332 333444323 667999999999998
Q ss_pred hCC
Q 033230 83 EID 85 (124)
Q Consensus 83 ~lg 85 (124)
...
T Consensus 243 ~~~ 245 (447)
T 3pvs_A 243 ERS 245 (447)
T ss_dssp CCC
T ss_pred hhh
Confidence 764
No 117
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=34.99 E-value=57 Score=17.77 Aligned_cols=39 Identities=3% Similarity=-0.009 Sum_probs=23.7
Q ss_pred HHHHhcCCCccChhHHHHhhhhCCCcccHHHHHHHHHHH
Q 033230 62 DICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDGQ 100 (124)
Q Consensus 62 ~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~~~ 100 (124)
...-.++.-+|+.+++..+|..+|..-=...+...+..+
T Consensus 8 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 46 (67)
T 1tiz_A 8 EKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEI 46 (67)
T ss_dssp HHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 334455666788888888888877654344444444443
No 118
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=34.83 E-value=15 Score=25.21 Aligned_cols=46 Identities=9% Similarity=0.172 Sum_probs=31.3
Q ss_pred hcCCCccChhHHHHhhhhCCC--cccHH-HHHHHHHHHHhhhchheeeeccCCc
Q 033230 66 ESKRQTINAEDVLKAIEEIDF--TEFVD-PLRDSLDGQLTFRNWIFIFCCNFPA 116 (124)
Q Consensus 66 ~~kRKTI~~eDVl~AL~~lgf--~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~ 116 (124)
++..++||.+||..-|+..|. +.|.+ .+-..|+. +.+..+| ||+|+
T Consensus 16 ~d~~~~itad~I~~ilkAaGveVe~~~~~lfakaL~g-knI~eLI----~sv~~ 64 (110)
T 3iz5_t 16 HDDGIPITSEKIATVVKAAGIKVEAYWPALFAKLLEK-RSVDDLI----LSVGS 64 (110)
T ss_dssp HHHTCCCSHHHHHHHHHHHTCCCCSHHHHHHHHHHTT-CCHHHHH----TCCC-
T ss_pred cCCCCCcChHHHHHHHHHhCCcccHHHHHHHHHHcCC-CCHHHHH----hcCCC
Confidence 444678999999999998886 44443 34445544 6677777 77664
No 119
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=33.31 E-value=15 Score=24.39 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.8
Q ss_pred ccChhHHHHhhhhCCCcccHHHH
Q 033230 71 TINAEDVLKAIEEIDFTEFVDPL 93 (124)
Q Consensus 71 TI~~eDVl~AL~~lgf~~~~~~l 93 (124)
.=+++||..=|+.+||++|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 35899999999999999998654
No 120
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=32.69 E-value=31 Score=26.28 Aligned_cols=68 Identities=10% Similarity=0.103 Sum_probs=38.6
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
.++...+.+.+++.+.. .+..|+.+|...|.+.+.-=...+.++-.+.+.-.+.++|+.+||...+..
T Consensus 141 ~l~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQ----LNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp CCCTTHHHHHHHHHHHH----TTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 45556666666655542 257899999888887654322223333333333223457888887665443
No 121
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=32.57 E-value=82 Score=22.91 Aligned_cols=68 Identities=9% Similarity=0.129 Sum_probs=39.2
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
.+|..-+..+++..+.. .+..++.++...|.+.+.--+..+-......+.. ..+|+.+||..++....
T Consensus 160 ~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~~~ 227 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATAR 227 (319)
T ss_dssp CCCHHHHHHHHHHHHHT----TCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCC
Confidence 34556666666665542 2467888888887765443222222222222322 34799999988776543
No 122
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=31.95 E-value=84 Score=22.83 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=31.0
Q ss_pred chhhHHHHHHHHHHHHH------------HHHHHHHH----HHHHHHhcCCC-ccChhHHHHhhhhCCC
Q 033230 35 ISVHKDALLAFCESARI------------FIHYLSAT----ANDICKESKRQ-TINAEDVLKAIEEIDF 86 (124)
Q Consensus 35 ~~ISkdA~~al~~~a~~------------FI~~lt~~----A~~~a~~~kRK-TI~~eDVl~AL~~lgf 86 (124)
..++.++...|.+.+.. ....+-.. +.+.+..++++ +|+.+||..|++.+.-
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 46888888888876632 22222211 12223233333 5999999999987653
No 123
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=31.31 E-value=97 Score=22.62 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=37.2
Q ss_pred cchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhC
Q 033230 13 LPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEI 84 (124)
Q Consensus 13 LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~l 84 (124)
++..-+..+++..+.. .+..++.++...|.+.+.--+..+-......+. ...+|+.+||..++...
T Consensus 169 l~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~--~~~~i~~~~v~~~~~~~ 234 (327)
T 1iqp_A 169 LRDEDIAKRLRYIAEN----EGLELTEEGLQAILYIAEGDMRRAINILQAAAA--LDKKITDENVFMVASRA 234 (327)
T ss_dssp CCHHHHHHHHHHHHHT----TTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSEECHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHCCC
Confidence 4556666666665542 246788888888877653322222222222221 23478888888776554
No 124
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=31.28 E-value=1.5e+02 Score=24.71 Aligned_cols=46 Identities=9% Similarity=-0.017 Sum_probs=32.4
Q ss_pred cchhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhcCCCccChhHHHH
Q 033230 34 DISVHKDALLAFCESARI-------------FIHYLSATANDICKESKRQTINAEDVLK 79 (124)
Q Consensus 34 ~~~ISkdA~~al~~~a~~-------------FI~~lt~~A~~~a~~~kRKTI~~eDVl~ 79 (124)
++.++.+..+.+.+.... -...+...|...|.-.||..|+++||..
T Consensus 223 ~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~ 281 (500)
T 3nbx_X 223 EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLIL 281 (500)
T ss_dssp TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGG
T ss_pred cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHHH
Confidence 456777777777665532 1223455677788899999999999993
No 125
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=31.22 E-value=69 Score=19.55 Aligned_cols=42 Identities=10% Similarity=0.052 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCccChhHHHHhhhhC---CCcccHHHHHHHHHHH
Q 033230 59 TANDICKESKRQTINAEDVLKAIEEI---DFTEFVDPLRDSLDGQ 100 (124)
Q Consensus 59 ~A~~~a~~~kRKTI~~eDVl~AL~~l---gf~~~~~~l~~~l~~~ 100 (124)
.+....-.+|.-+|+.+++..+|..+ |..--.+.++..+..+
T Consensus 45 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 45 EVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAG 89 (109)
T ss_dssp HHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 45556667788899999999999998 6654455566665554
No 126
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=30.07 E-value=28 Score=19.63 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=15.5
Q ss_pred CccChhHHHHhhhhCCCc
Q 033230 70 QTINAEDVLKAIEEIDFT 87 (124)
Q Consensus 70 KTI~~eDVl~AL~~lgf~ 87 (124)
.++++++|..+++++||.
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 467889999999999985
No 127
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.67 E-value=1.8e+02 Score=21.52 Aligned_cols=69 Identities=9% Similarity=0.024 Sum_probs=40.4
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC-CccChhHHHHhhhhCC
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESAR----IFIHYLSATANDICKESKR-QTINAEDVLKAIEEID 85 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~----~FI~~lt~~A~~~a~~~kR-KTI~~eDVl~AL~~lg 85 (124)
.++...+..+++..+.. .+..++.++...|.+.+. .-++.+-.. ...+.+.++ ++|+.+||..++....
T Consensus 191 ~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~-~~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQ----ENVKCDDGVLERILDISAGDLRRGITLLQSA-SKGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHTSSCHHHHHHHHHHT-HHHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH-HHhcCCCccCccccHHHHHHHhCCCC
Confidence 34555566666655432 146788888888777542 333433332 223333333 3899999999887554
No 128
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=27.86 E-value=31 Score=25.06 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCCccChhHHHHhhhhCCC
Q 033230 56 LSATANDICKESKRQTINAEDVLKAIEEIDF 86 (124)
Q Consensus 56 lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf 86 (124)
+...|...|...+++.|+.+|+..|++...-
T Consensus 225 l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 255 (268)
T 2r62_A 225 IINEAALLAGRNNQKEVRQQHLKEAVERGIA 255 (268)
T ss_dssp HHHHHHHTTSSSCCCSCCHHHHHTSCTTCCC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHhh
Confidence 3345666677778899999999999987643
No 129
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=27.71 E-value=1.2e+02 Score=19.26 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCccChhHHHHhhhhCCCcccHHHHHHHHHH
Q 033230 59 TANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDG 99 (124)
Q Consensus 59 ~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~~ 99 (124)
.+....-.++.-.|+.+++..+|..+|..-=.+.+...++.
T Consensus 100 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 140 (161)
T 3fwb_A 100 RAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEE 140 (161)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34455556777789999999999999865444445544443
No 130
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=27.36 E-value=39 Score=22.14 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=21.3
Q ss_pred HhcCCCc--------cChhHHHHhhhhCCCcccHH
Q 033230 65 KESKRQT--------INAEDVLKAIEEIDFTEFVD 91 (124)
Q Consensus 65 ~~~kRKT--------I~~eDVl~AL~~lgf~~~~~ 91 (124)
..+||+. .+.++|..|++.|||...++
T Consensus 14 r~eGRrv~k~~aV~~P~~~EI~~a~~~lgl~~~~E 48 (87)
T 1lng_A 14 RREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIY 48 (87)
T ss_dssp TTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCCEEE
T ss_pred hhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEEc
Confidence 4566664 68899999999999986554
No 131
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=27.29 E-value=32 Score=27.77 Aligned_cols=64 Identities=6% Similarity=-0.009 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-ChhHHHHhhhhCCCcccHHHHHHHHHHHHh
Q 033230 37 VHKDALLAFCESARIFIHYLSATANDICKESKRQTI-NAEDVLKAIEEIDFTEFVDPLRDSLDGQLT 102 (124)
Q Consensus 37 ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI-~~eDVl~AL~~lgf~~~~~~l~~~l~~~~~ 102 (124)
++.|-.+.+....+.--.|+.....+.-.... .. .=+..++-|+.+|++++++..+.++++|++
T Consensus 471 ~t~~e~~~~~~~~~~i~~~~~~~~~~~i~g~~--~~~~wd~y~~~l~~~g~~~~~~~~q~~yd~~~k 535 (535)
T 3omb_A 471 MDPSDATKLNTNNAEIFNTTMQKTATWMSKGG--IDEEWDAYCKQLDSIGLQESTKIWQKWYDTYTK 535 (535)
T ss_dssp SCHHHHHHHHHHHHHHTTTHHHHHHHHHHHCC--HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhhC
Confidence 67777777766666666666665555555442 22 246788999999999999999999999863
No 132
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=27.00 E-value=1.1e+02 Score=18.60 Aligned_cols=41 Identities=7% Similarity=0.075 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCccChhHHHHhhhhCCCcccHHHHHHHHHHH
Q 033230 60 ANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDGQ 100 (124)
Q Consensus 60 A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~~~ 100 (124)
+......++.-+|+.+++..+|..+|..-=...++..++.+
T Consensus 34 ~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 74 (94)
T 2kz2_A 34 AFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 74 (94)
T ss_dssp HHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 33444567777899999999999998754344555555443
No 133
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.69 E-value=38 Score=24.83 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=36.9
Q ss_pred ccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCC
Q 033230 12 ELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEID 85 (124)
Q Consensus 12 ~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lg 85 (124)
.++...+..+++..+.. .+..++.++...+.+.+.--+..+-......+.. .+.|+.+||..++....
T Consensus 165 ~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~--~~~i~~~~v~~~~~~~~ 232 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKL----EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG--HGLVNADNVFKIVDSPH 232 (323)
T ss_dssp CCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HSSBCHHHHHHHHTSCC
T ss_pred CCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCcCHHHHHHHHCCCC
Confidence 34455666666655431 1356788887777766542222222222222222 24699999988876554
No 134
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=26.30 E-value=35 Score=19.56 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=14.9
Q ss_pred ccChhHHHHhhhhCCCc
Q 033230 71 TINAEDVLKAIEEIDFT 87 (124)
Q Consensus 71 TI~~eDVl~AL~~lgf~ 87 (124)
++++++|..+++++||.
T Consensus 45 ~~~~~~i~~~i~~~Gy~ 61 (68)
T 3iwl_A 45 EHSMDTLLATLKKTGKT 61 (68)
T ss_dssp SSCHHHHHHHHHTTCSC
T ss_pred cCCHHHHHHHHHHcCCc
Confidence 47899999999999986
No 135
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=25.41 E-value=95 Score=17.89 Aligned_cols=41 Identities=7% Similarity=0.160 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCccChhHHHHhhhhCCCcccHHHHHHHHHHH
Q 033230 60 ANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDGQ 100 (124)
Q Consensus 60 A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~~~ 100 (124)
+....-.+|.-+|+.+++..+|..+|..-=...+...+..+
T Consensus 19 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (85)
T 2ktg_A 19 AFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDY 59 (85)
T ss_dssp HHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 33444566777899999999999988754444555555443
No 136
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=25.32 E-value=98 Score=18.74 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=26.6
Q ss_pred hcCCCccChhHHHHhhhhCCCcccHHHHHHHHH
Q 033230 66 ESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLD 98 (124)
Q Consensus 66 ~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~ 98 (124)
+.|+..++.+.+..-.+.+|.++....+-..+.
T Consensus 48 E~G~~~p~~~~l~~ia~~l~v~~~~~~l~~~~~ 80 (86)
T 3eus_A 48 ETRERRLDVIEFAKWMAACEGLDVVSEIVATIA 80 (86)
T ss_dssp HTTSSCCBHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 677889999999999999999877666655543
No 137
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=24.92 E-value=66 Score=20.24 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCccChhHHHHhhhhCCCc
Q 033230 60 ANDICKESKRQTINAEDVLKAIEEIDFT 87 (124)
Q Consensus 60 A~~~a~~~kRKTI~~eDVl~AL~~lgf~ 87 (124)
|.-++...|..+++++||...|+..|.+
T Consensus 7 A~Lll~~~g~~~~ta~~I~~il~aaGve 34 (70)
T 2lbf_B 7 SYLLAALGGNSSPSAKDIKKILDSVGIE 34 (70)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHTTTCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHcCCC
Confidence 4455666777799999999999999974
No 138
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=24.76 E-value=84 Score=24.10 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCC------------------CccChhHHHHhhhhCC
Q 033230 49 ARIFIHYLSATANDICKESKR------------------QTINAEDVLKAIEEID 85 (124)
Q Consensus 49 a~~FI~~lt~~A~~~a~~~kR------------------KTI~~eDVl~AL~~lg 85 (124)
...|-..|+-+-.++|..... -.||++||+.|++.|.
T Consensus 88 ~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~ 142 (233)
T 1u5t_A 88 VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLK 142 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhh
Confidence 478999999999999976532 2799999999988765
No 139
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.69 E-value=58 Score=23.99 Aligned_cols=44 Identities=18% Similarity=0.039 Sum_probs=34.2
Q ss_pred ccChhHHHHhhhhCCCcccHHHHHHHHHHHHhhhchheeeeccC
Q 033230 71 TINAEDVLKAIEEIDFTEFVDPLRDSLDGQLTFRNWIFIFCCNF 114 (124)
Q Consensus 71 TI~~eDVl~AL~~lgf~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 114 (124)
.-+.+||-.|++.==+..--.--+.--+.|++.++++++|..|-
T Consensus 33 S~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~~V~L~FSVn~ 76 (180)
T 2yud_A 33 SNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRE 76 (180)
T ss_dssp ESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSSCEEEEEEETT
T ss_pred eCCHHHHHHHHHcCEeecccccHHHHHHHHhhCCeEEEEEEeCC
Confidence 45788999998665566666666677788999999999998873
No 140
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=24.69 E-value=81 Score=17.77 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=20.1
Q ss_pred HHhcCCCccChhHHHHhhhhCCCcccHHHHHHHHH
Q 033230 64 CKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLD 98 (124)
Q Consensus 64 a~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~ 98 (124)
.-.++.-+|+.+++..+|..+|..-=...++..+.
T Consensus 16 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 16 FDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp HCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred hCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34455566777777777777776433333444333
No 141
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.04 E-value=30 Score=22.73 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=16.9
Q ss_pred cChhHHHHhhhhCCCcc--cHHHH
Q 033230 72 INAEDVLKAIEEIDFTE--FVDPL 93 (124)
Q Consensus 72 I~~eDVl~AL~~lgf~~--~~~~l 93 (124)
=+++||..-|+.+||++ |.+..
T Consensus 30 Ws~~~V~~WL~~lgl~~~~y~~~F 53 (103)
T 2e8o_A 30 WGPEQVCSFLRRGGFEEPVLLKNI 53 (103)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCChHHHHHHH
Confidence 46788888888899887 66544
No 142
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=23.56 E-value=1.8e+02 Score=19.78 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=31.9
Q ss_pred HHHHhcCCCccChhHHHHhhhhCCCcccHHHHHHHHHHHHhhh
Q 033230 62 DICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDGQLTFR 104 (124)
Q Consensus 62 ~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~~~~~~~ 104 (124)
....++|+. -+.+.++.||..+|..+..+.|+..++. +..+
T Consensus 55 ~W~~r~G~~-ATv~~L~~AL~~i~~~diAe~Ie~~l~~-~~~~ 95 (122)
T 3ezq_B 55 IWKNTEKEN-ATVAHLVGALRSCQMNLVADLVQEVQQA-RDLQ 95 (122)
T ss_dssp HHHHHCTTT-CCHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHH
T ss_pred HHHHhhCCC-chHHHHHHHHHHCCCHHHHHHHHHHHHH-hhcc
Confidence 344556643 4889999999999999999999998886 3443
No 143
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=23.53 E-value=99 Score=17.89 Aligned_cols=39 Identities=10% Similarity=0.264 Sum_probs=27.8
Q ss_pred HHHHhcCCCccChhHHHHhhhhCCCcccHHHHHHHHHHH
Q 033230 62 DICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDGQ 100 (124)
Q Consensus 62 ~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~~~ 100 (124)
...-.++.-.|+.+++..+|..+|..-=...+...+..+
T Consensus 30 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 68 (87)
T 1s6j_A 30 KMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAA 68 (87)
T ss_dssp HHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 344467777899999999999999764445555555554
No 144
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=23.29 E-value=33 Score=19.68 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.3
Q ss_pred CccChhHHHHhhhhCCCc
Q 033230 70 QTINAEDVLKAIEEIDFT 87 (124)
Q Consensus 70 KTI~~eDVl~AL~~lgf~ 87 (124)
.+++.++|..+++.+||.
T Consensus 49 ~~~~~~~i~~~i~~~Gy~ 66 (74)
T 3dxs_X 49 NLVKEEDIKEEIEDAGFE 66 (74)
T ss_dssp TTCCHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHCCCc
Confidence 347889999999999986
No 145
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=23.26 E-value=1.2e+02 Score=17.57 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=20.0
Q ss_pred HHHHhcCCCccChhHHHHhhhhCCCcccHHHHHHHHHH
Q 033230 62 DICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDG 99 (124)
Q Consensus 62 ~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~~ 99 (124)
...-.+|.-+|+.+++..+|..+| .-=...++..+..
T Consensus 18 ~~~D~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~ 54 (86)
T 2opo_A 18 KRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAE 54 (86)
T ss_dssp HHHCTTCSSEEEHHHHHHHHHTTT-TCCHHHHHHHHHH
T ss_pred HHHCCCCCCCcCHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 333455556677777777777776 3223334443333
No 146
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=22.81 E-value=38 Score=21.71 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=18.9
Q ss_pred ccChhHHHHhhhhCCC--cccHHHH
Q 033230 71 TINAEDVLKAIEEIDF--TEFVDPL 93 (124)
Q Consensus 71 TI~~eDVl~AL~~lgf--~~~~~~l 93 (124)
.=+++||..=|+.+|| ++|.+..
T Consensus 19 ~Wt~~dV~~WL~~~gl~~~~Y~~~F 43 (91)
T 1v85_A 19 KWTTEEVVLWLEQLGPWASLYRDRF 43 (91)
T ss_dssp GCCHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4588999999999999 7776554
No 147
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=22.73 E-value=46 Score=20.35 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=18.2
Q ss_pred cChhHHHHhhhhC--CCcccHHHHH
Q 033230 72 INAEDVLKAIEEI--DFTEFVDPLR 94 (124)
Q Consensus 72 I~~eDVl~AL~~l--gf~~~~~~l~ 94 (124)
=|++||..=|+.+ |+++|.+...
T Consensus 6 Wt~~~V~~WL~~~~~gl~~y~~~F~ 30 (78)
T 3bs7_A 6 WTVSDVLKWYRRHCGEYTQYEQLFA 30 (78)
T ss_dssp CCHHHHHHHHHHHSGGGGGGHHHHH
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3788999999986 8888877654
No 148
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=22.66 E-value=69 Score=20.34 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=37.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCcccHHHHHHHHHH
Q 033230 35 ISVHKDALLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDG 99 (124)
Q Consensus 35 ~~ISkdA~~al~~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~~ 99 (124)
..++.+-...|. +|....-.+|.-+|+.+++..+|+.+|+.-=-..+++.++.
T Consensus 28 ~~l~~~~~~el~------------~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 28 VDIPEDELEEIR------------EAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp CCCCGGGHHHHH------------HHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred ccCCHHHHHHHH------------HHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 456776666665 35666678888899999999999999975333344444444
No 149
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=22.51 E-value=64 Score=22.14 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=31.5
Q ss_pred HHHHhcCCCccChhHHHHhhhhCCCcccHHHHHHHHHH
Q 033230 62 DICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDG 99 (124)
Q Consensus 62 ~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~~ 99 (124)
..-...|++--+.++++.||+++++..-.+.+++.+.+
T Consensus 63 ~W~~~~G~~~Atv~~L~~aLr~~~l~~~ae~Ie~~l~~ 100 (112)
T 1ich_A 63 TWRRRTPRREATLELLGRVLRDMDLLGCLEDIEEALCG 100 (112)
T ss_dssp HHHHHSCCSSCHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHhcCCCCCcHHHHHHHHHHhccHHHHHHHHHHHhc
Confidence 55667888888999999999999999888888877654
No 150
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=22.48 E-value=43 Score=22.54 Aligned_cols=30 Identities=10% Similarity=-0.041 Sum_probs=22.4
Q ss_pred cccccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHH
Q 033230 9 EAEELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCE 47 (124)
Q Consensus 9 ed~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~ 47 (124)
+.+....|+|+|+ |..| .+++++.+..|.+
T Consensus 66 ~~lGiS~stISRi-~r~L--------~~l~~~~k~~l~~ 95 (101)
T 1jhg_A 66 NELGAGIATITRG-SNSL--------KAAPVELRQWLEE 95 (101)
T ss_dssp HHHCCCHHHHHHH-HHHH--------HHSCHHHHHHHHH
T ss_pred HHHCCChhhhhHH-HHHH--------HHccHHHHHHHHH
Confidence 4567888999999 7777 3567777777754
No 151
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=22.39 E-value=72 Score=19.31 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=25.2
Q ss_pred cccchhHHHHHHhccccCCCCCCcchhhHHHHHHHHHHHHHH
Q 033230 11 EELPKTIVRRVVKDKLHNCSPDTDISVHKDALLAFCESARIF 52 (124)
Q Consensus 11 ~~LP~A~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~~~a~~F 52 (124)
..+..++|.|++... -.||.+.+.-+.+++.++
T Consensus 19 aGVS~sTVSr~ln~~---------~~vs~~t~~rV~~~a~~l 51 (67)
T 2l8n_A 19 AKVSTATVSRALMNP---------DKVSQATRNRVEKAAREV 51 (67)
T ss_dssp TTCCHHHHHHTTTCC---------CCSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcCC---------CCCCHHHHHHHHHHHHHh
Confidence 378889999987653 247999998888877764
No 152
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=21.87 E-value=1.3e+02 Score=17.63 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCccChhHHHHhhhhCCCcccHHHHHHHHHHH
Q 033230 60 ANDICKESKRQTINAEDVLKAIEEIDFTEFVDPLRDSLDGQ 100 (124)
Q Consensus 60 A~~~a~~~kRKTI~~eDVl~AL~~lgf~~~~~~l~~~l~~~ 100 (124)
+....-.+|.-.|+.+++..+|..+|..-=...+...+..+
T Consensus 25 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~ 65 (90)
T 1avs_A 25 AFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEV 65 (90)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 33444466777899999999999998754444555555443
No 153
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=21.20 E-value=69 Score=19.59 Aligned_cols=24 Identities=4% Similarity=0.261 Sum_probs=18.4
Q ss_pred cChhHHHHhhhhC--CCcccHHHHHH
Q 033230 72 INAEDVLKAIEEI--DFTEFVDPLRD 95 (124)
Q Consensus 72 I~~eDVl~AL~~l--gf~~~~~~l~~ 95 (124)
=+++||..-|+.+ |+++|.+...+
T Consensus 7 Ws~~~V~~WL~~l~~gl~~Y~~~F~~ 32 (80)
T 3bs5_B 7 WSPSQVVDWMKGLDDCLQQYIKNFER 32 (80)
T ss_dssp CCHHHHHHHHHTSCGGGGGGHHHHHH
T ss_pred CCHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3688999999988 48888876543
No 154
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=21.02 E-value=73 Score=27.03 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCCCccChhHHHHhhhh
Q 033230 54 HYLSATANDICKESKRQTINAEDVLKAIEE 83 (124)
Q Consensus 54 ~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~ 83 (124)
.-+...|...|.-.+|.+|+.+||..|++-
T Consensus 557 ~~lirla~a~A~l~~~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 557 EALIRISEAYAKMALKAEVTREDAERAINI 586 (595)
T ss_dssp THHHHHHHHHHHTTSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 345567778889999999999999999854
No 155
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=20.94 E-value=1.2e+02 Score=21.82 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=12.3
Q ss_pred ccChhHHHHhhhhCC
Q 033230 71 TINAEDVLKAIEEID 85 (124)
Q Consensus 71 TI~~eDVl~AL~~lg 85 (124)
-|||+|++.|++.+.
T Consensus 59 lISp~Dl~~A~~~l~ 73 (169)
T 1u5t_B 59 LISPMEMREACERFE 73 (169)
T ss_dssp CCCHHHHHHHHTTTG
T ss_pred ccCHHHHHHHHHHHH
Confidence 699999999987654
No 156
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=20.87 E-value=63 Score=24.86 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhc---------------------C--CCccChhHHHHhhhhCC
Q 033230 50 RIFIHYLSATANDICKES---------------------K--RQTINAEDVLKAIEEID 85 (124)
Q Consensus 50 ~~FI~~lt~~A~~~a~~~---------------------k--RKTI~~eDVl~AL~~lg 85 (124)
..|-..|+-+-.++|... | +-.|+++||+.|++.|.
T Consensus 70 gdfy~eLavqIvEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~ 128 (234)
T 3cuq_A 70 GDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLK 128 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHG
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHH
Confidence 466666666666666432 1 15799999999987654
No 157
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=20.82 E-value=39 Score=20.58 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=12.5
Q ss_pred hHHHHhhhhCCCcc
Q 033230 75 EDVLKAIEEIDFTE 88 (124)
Q Consensus 75 eDVl~AL~~lgf~~ 88 (124)
+|++.||..|||..
T Consensus 18 ~ea~~AL~aLGY~~ 31 (62)
T 1ixs_A 18 EEAVMALAALGFKE 31 (62)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCCH
Confidence 68999999999974
No 158
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A
Probab=20.78 E-value=49 Score=22.35 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=17.2
Q ss_pred cChhHHHHhhhhCCCcccHH
Q 033230 72 INAEDVLKAIEEIDFTEFVD 91 (124)
Q Consensus 72 I~~eDVl~AL~~lgf~~~~~ 91 (124)
.+.++|..|++.|||...++
T Consensus 32 P~~~EI~~a~~~Lgl~~~vE 51 (104)
T 1kvn_A 32 VKLHELVEASKELGLKFRAE 51 (104)
T ss_dssp CCHHHHHHHHHHHTSSEEEC
T ss_pred CCHHHHHHHHHHcCCCeEEe
Confidence 78899999999999986553
No 159
>3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA, cytoplasm, ribonucleoprotein, RNA-binding, RNA binding protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B
Probab=20.74 E-value=52 Score=22.38 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=20.1
Q ss_pred HHhcCCCc--------cChhHHHHhhhhCCCcc
Q 033230 64 CKESKRQT--------INAEDVLKAIEEIDFTE 88 (124)
Q Consensus 64 a~~~kRKT--------I~~eDVl~AL~~lgf~~ 88 (124)
...+||+. .+.++|..|++.|||..
T Consensus 16 sr~eGRRV~k~~aV~nPt~~EI~~a~~~lgl~~ 48 (106)
T 3dlu_A 16 SRKYGRIVPRSIAVESPRVEEIVRAAEELKFKV 48 (106)
T ss_dssp CGGGTCCSCTTTSBSSCCHHHHHHHHHHTTCEE
T ss_pred ChhhcCccCHHHhccCCCHHHHHHHHHHcCCCc
Confidence 34567764 78899999999999976
No 160
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=20.59 E-value=47 Score=19.99 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=14.9
Q ss_pred ccChhHHHHhhhhCCCc
Q 033230 71 TINAEDVLKAIEEIDFT 87 (124)
Q Consensus 71 TI~~eDVl~AL~~lgf~ 87 (124)
.++..|++++|+..||.
T Consensus 4 p~~~~elik~L~~~G~~ 20 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFV 20 (70)
T ss_dssp CCCHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHCCCE
Confidence 46889999999999986
No 161
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.25 E-value=2.9e+02 Score=21.34 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=56.5
Q ss_pred HHHHHHhccccCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccChhHHHHhhhhCCCc--ccHHHH
Q 033230 17 IVRRVVKDKLHNCSPDTDISVHKDALLAFC-ESARIFIHYLSATANDICKESKRQTINAEDVLKAIEEIDFT--EFVDPL 93 (124)
Q Consensus 17 ~I~RI~K~~Lp~~~~d~~~~ISkdA~~al~-~~a~~FI~~lt~~A~~~a~~~kRKTI~~eDVl~AL~~lgf~--~~~~~l 93 (124)
.+..+++..|-. |...+|.+-+..+. +-=.+.+.+|+..+.+ -..++..++.-|-.||++++|. -+.+.=
T Consensus 92 d~~eii~~IL~k----Ge~Q~s~~eR~~~lE~k~r~Ii~~Ia~~~Vn---P~T~~P~p~~~IE~Am~e~~~~Vdp~ksak 164 (252)
T 2wbm_A 92 DPLEVTPVILRR----GTIQLTAEQRRQMIEDKRLKIINKIAREAIN---PQNGLPHPPKRIEKAMEEARVHVDPFKTVD 164 (252)
T ss_dssp CHHHHHHHHHHH----SEEECCHHHHHHHHHHHHHHHHHHHHHHEEC---TTTCCCCCHHHHHHHHHHTTCCCCSSSCHH
T ss_pred CHHHHHHHHHhc----CCcccCchhHHHHHHHHHHHHHHHHHHhccC---CCCCCcCCHHHHHHHHHhCCcccCCCCCHH
Confidence 344555555542 56778877655444 4445566666553322 4567789999999999999974 577777
Q ss_pred HHHHHHHHhhhchh
Q 033230 94 RDSLDGQLTFRNWI 107 (124)
Q Consensus 94 ~~~l~~~~~~~~~~ 107 (124)
+..++--+.++..|
T Consensus 165 ~Qalevik~L~~~i 178 (252)
T 2wbm_A 165 EQVNIVLKAIRTKI 178 (252)
T ss_dssp HHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhhhc
Confidence 77888888887654
No 162
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=20.23 E-value=1.3e+02 Score=18.93 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=13.5
Q ss_pred CCCccChhHHHHhhhhC
Q 033230 68 KRQTINAEDVLKAIEEI 84 (124)
Q Consensus 68 kRKTI~~eDVl~AL~~l 84 (124)
+|=+.++.+|.+.++.|
T Consensus 41 ~rF~p~~~~IKk~IE~L 57 (77)
T 3tdu_C 41 SRFKPRVPVIKKCIDIL 57 (77)
T ss_dssp TTCCCCHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHH
Confidence 67788888888887765
No 163
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=20.19 E-value=1.5e+02 Score=17.80 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCccChhHHHHhhhhC---CCcccHHHHHHHHHHH
Q 033230 59 TANDICKESKRQTINAEDVLKAIEEI---DFTEFVDPLRDSLDGQ 100 (124)
Q Consensus 59 ~A~~~a~~~kRKTI~~eDVl~AL~~l---gf~~~~~~l~~~l~~~ 100 (124)
.+....-.++.-+|+.+++..+|..+ |..--...++..+..+
T Consensus 46 ~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (110)
T 1pva_A 46 KVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAA 90 (110)
T ss_dssp HHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Confidence 45555667788899999999999999 5443344555555544
Done!