Your job contains 1 sequence.
>033231
MAGQEGAEEDAENINNDDINGEPIETEEKEEQEQKEAARKTSKYMTKYERARILGTRALQ
ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQ
VGGD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033231
(124 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2173058 - symbol:NRPB6A species:3702 "Arabidop... 431 1.6e-40 1
TAIR|locus:2049213 - symbol:NRPB6B species:3702 "Arabidop... 426 5.3e-40 1
CGD|CAL0003456 - symbol:RPO26 species:5476 "Candida albic... 331 6.2e-30 1
UNIPROTKB|Q59QT0 - symbol:RPO26 "Potential subunit common... 331 6.2e-30 1
ZFIN|ZDB-GENE-040718-279 - symbol:polr2f "polymerase (RNA... 331 6.2e-30 1
MGI|MGI:1349393 - symbol:Polr2f "polymerase (RNA) II (DNA... 329 1.0e-29 1
RGD|708567 - symbol:Polr2f "polymerase (RNA) II (DNA dire... 329 1.0e-29 1
UNIPROTKB|F1ND65 - symbol:POLR2F "Uncharacterized protein... 328 1.3e-29 1
UNIPROTKB|Q9PT88 - symbol:RPB6 "RNA polymerase common sub... 328 1.3e-29 1
UNIPROTKB|F2Z4C9 - symbol:POLR2F "DNA-directed RNA polyme... 328 1.3e-29 1
UNIPROTKB|Q32PE0 - symbol:POLR2F "DNA-directed RNA polyme... 328 1.3e-29 1
UNIPROTKB|E2RPD9 - symbol:POLR2F "Uncharacterized protein... 328 1.3e-29 1
UNIPROTKB|P61218 - symbol:POLR2F "DNA-directed RNA polyme... 328 1.3e-29 1
UNIPROTKB|P61217 - symbol:POLR2F "DNA-directed RNA polyme... 328 1.3e-29 1
UNIPROTKB|Q5R592 - symbol:POLR2F "DNA-directed RNA polyme... 328 1.3e-29 1
SGD|S000006391 - symbol:RPO26 "RNA polymerase subunit ABC... 323 4.4e-29 1
UNIPROTKB|F1SKN8 - symbol:POLR2F "Uncharacterized protein... 321 7.1e-29 1
FB|FBgn0003275 - symbol:RpII18 "RNA polymerase II 18kD su... 318 1.5e-28 1
POMBASE|SPCC1020.04c - symbol:rpb6 "DNA-directed RNA poly... 316 2.4e-28 1
DICTYBASE|DDB_G0291037 - symbol:rpb6 "RNA polymerase II c... 313 5.0e-28 1
WB|WBGene00007355 - symbol:rpb-6 species:6239 "Caenorhabd... 304 4.5e-27 1
UNIPROTKB|Q17684 - symbol:rpb-6 "Probable DNA-directed RN... 304 4.5e-27 1
UNIPROTKB|E3LFP4 - symbol:Cre-rpb-6 "CRE-RPB-6 protein" s... 301 9.4e-27 1
UNIPROTKB|A8WSV7 - symbol:rpb-6 "Probable DNA-directed RN... 300 1.2e-26 1
GENEDB_PFALCIPARUM|PFC0155c - symbol:PFC0155c "DNA-direct... 231 2.5e-19 1
UNIPROTKB|B0QYL9 - symbol:POLR2F "DNA-directed RNA polyme... 197 9.8e-16 1
UNIPROTKB|B0QYL8 - symbol:POLR2F "DNA-directed RNA polyme... 195 1.6e-15 1
UNIPROTKB|F8WC47 - symbol:POLR2F "DNA-directed RNA polyme... 193 2.6e-15 1
>TAIR|locus:2173058 [details] [associations]
symbol:NRPB6A species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0030880 "RNA polymerase
complex" evidence=IEA] [GO:0000418 "DNA-directed RNA polymerase IV
complex" evidence=IPI] [GO:0000419 "DNA-directed RNA polymerase V
complex" evidence=IPI] [GO:0005665 "DNA-directed RNA polymerase II,
core complex" evidence=IPI] [GO:0000394 "RNA splicing, via
endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=RCA]
HAMAP:MF_00192 InterPro:IPR006110 InterPro:IPR006111
InterPro:IPR012293 InterPro:IPR020708 Pfam:PF01192
PIRSF:PIRSF000778 PROSITE:PS01111 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006351 EMBL:AB015478
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 GO:GO:0005665
eggNOG:COG1758 HOGENOM:HOG000225272 Gene3D:3.90.940.10
PANTHER:PTHR10773 SUPFAM:SSF63562 KO:K03014 UniGene:At.19147
UniGene:At.66742 EMBL:AF370301 EMBL:AY063088 EMBL:AY088602
IPI:IPI00548646 RefSeq:NP_200007.1 HSSP:P20435
ProteinModelPortal:Q9FJ98 SMR:Q9FJ98 STRING:Q9FJ98 PaxDb:Q9FJ98
PRIDE:Q9FJ98 EnsemblPlants:AT5G51940.1 GeneID:835269
KEGG:ath:AT5G51940 TAIR:At5g51940 InParanoid:Q9FJ98 OMA:IMADEDY
PhylomeDB:Q9FJ98 ProtClustDB:PLN00152 ArrayExpress:Q9FJ98
Genevestigator:Q9FJ98 Uniprot:Q9FJ98
Length = 144
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 82/86 (95%), Positives = 86/86 (100%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
RKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYL
Sbjct: 59 RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYL 118
Query: 99 PDGSYEDWGVDELIVEDSWKRQVGGD 124
PDGS+E+WGVDELIVEDSWKRQVGGD
Sbjct: 119 PDGSFEEWGVDELIVEDSWKRQVGGD 144
>TAIR|locus:2049213 [details] [associations]
symbol:NRPB6B species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0030880 "RNA polymerase
complex" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II,
core complex" evidence=IPI] [GO:0000394 "RNA splicing, via
endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=RCA]
HAMAP:MF_00192 InterPro:IPR006110 InterPro:IPR006111
InterPro:IPR012293 InterPro:IPR020708 Pfam:PF01192
PIRSF:PIRSF000778 PROSITE:PS01111 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351 EMBL:AC006955
GO:GO:0003899 GO:GO:0005665 eggNOG:COG1758 HOGENOM:HOG000225272
Gene3D:3.90.940.10 PANTHER:PTHR10773 SUPFAM:SSF63562 KO:K03014
HSSP:P20435 ProtClustDB:PLN00152 EMBL:BT010184 EMBL:AK229481
IPI:IPI00533719 PIR:E84459 RefSeq:NP_178540.1 UniGene:At.41285
ProteinModelPortal:Q9SJ96 SMR:Q9SJ96 IntAct:Q9SJ96 STRING:Q9SJ96
PRIDE:Q9SJ96 EnsemblPlants:AT2G04630.1 GeneID:815006
KEGG:ath:AT2G04630 TAIR:At2g04630 InParanoid:Q9SJ96 OMA:NNNEDVP
PhylomeDB:Q9SJ96 ArrayExpress:Q9SJ96 Genevestigator:Q9SJ96
Uniprot:Q9SJ96
Length = 144
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 82/86 (95%), Positives = 85/86 (98%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
RKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYL
Sbjct: 59 RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYL 118
Query: 99 PDGSYEDWGVDELIVEDSWKRQVGGD 124
PD SYE+WGVDELIVEDSWKRQVGGD
Sbjct: 119 PDMSYEEWGVDELIVEDSWKRQVGGD 144
>CGD|CAL0003456 [details] [associations]
symbol:RPO26 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IEA] [GO:0042797 "tRNA transcription from RNA polymerase
III promoter" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] HAMAP:MF_00192
InterPro:IPR006110 InterPro:IPR006111 InterPro:IPR012293
InterPro:IPR020708 Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111
CGD:CAL0003456 GO:GO:0042493 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AACQ01000171 EMBL:AACQ01000170 eggNOG:COG1758
HOGENOM:HOG000225272 Gene3D:3.90.940.10 PANTHER:PTHR10773
SUPFAM:SSF63562 KO:K03014 GO:GO:0030880 RefSeq:XP_712026.1
RefSeq:XP_712047.1 ProteinModelPortal:Q59QT0 SMR:Q59QT0
STRING:Q59QT0 GeneID:3646330 GeneID:3646351 KEGG:cal:CaO19.10166
KEGG:cal:CaO19.2643 Uniprot:Q59QT0
Length = 157
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 62/76 (81%), Positives = 70/76 (92%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RKIP IRRYL
Sbjct: 81 RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYL 140
Query: 99 PDGSYEDWGVDELIVE 114
PDGSYEDWG DELIV+
Sbjct: 141 PDGSYEDWGCDELIVD 156
>UNIPROTKB|Q59QT0 [details] [associations]
symbol:RPO26 "Potential subunit common to RNA polymerase I,
II and III" species:237561 "Candida albicans SC5314" [GO:0042493
"response to drug" evidence=IMP] HAMAP:MF_00192 InterPro:IPR006110
InterPro:IPR006111 InterPro:IPR012293 InterPro:IPR020708
Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111 CGD:CAL0003456
GO:GO:0042493 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AACQ01000171 EMBL:AACQ01000170 eggNOG:COG1758
HOGENOM:HOG000225272 Gene3D:3.90.940.10 PANTHER:PTHR10773
SUPFAM:SSF63562 KO:K03014 GO:GO:0030880 RefSeq:XP_712026.1
RefSeq:XP_712047.1 ProteinModelPortal:Q59QT0 SMR:Q59QT0
STRING:Q59QT0 GeneID:3646330 GeneID:3646351 KEGG:cal:CaO19.10166
KEGG:cal:CaO19.2643 Uniprot:Q59QT0
Length = 157
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 62/76 (81%), Positives = 70/76 (92%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RKIP IRRYL
Sbjct: 81 RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYL 140
Query: 99 PDGSYEDWGVDELIVE 114
PDGSYEDWG DELIV+
Sbjct: 141 PDGSYEDWGCDELIVD 156
>ZFIN|ZDB-GENE-040718-279 [details] [associations]
symbol:polr2f "polymerase (RNA) II (DNA directed)
polypeptide F" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0030880 "RNA polymerase complex" evidence=IEA]
InterPro:IPR006110 InterPro:IPR006111 InterPro:IPR012293
InterPro:IPR020708 Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111
ZFIN:ZDB-GENE-040718-279 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG1758 HOGENOM:HOG000225272 HOVERGEN:HBG002375
Gene3D:3.90.940.10 PANTHER:PTHR10773 SUPFAM:SSF63562 KO:K03014
GO:GO:0030880 GeneTree:ENSGT00390000010415 CTD:5435 OMA:EGQQANQ
EMBL:CR394546 EMBL:BC076264 IPI:IPI00503656 RefSeq:NP_001002544.1
UniGene:Dr.81106 SMR:Q6DGS5 STRING:Q6DGS5
Ensembl:ENSDART00000053201 GeneID:436817 KEGG:dre:436817
NextBio:20831249 Uniprot:Q6DGS5
Length = 127
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 63/77 (81%), Positives = 70/77 (90%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T++YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYL
Sbjct: 51 RITTQYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYL 110
Query: 99 PDGSYEDWGVDELIVED 115
PDGSYEDWG DELI+ D
Sbjct: 111 PDGSYEDWGCDELIITD 127
>MGI|MGI:1349393 [details] [associations]
symbol:Polr2f "polymerase (RNA) II (DNA directed)
polypeptide F" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0030880 "RNA polymerase complex" evidence=IEA]
[GO:0032774 "RNA biosynthetic process" evidence=IDA]
InterPro:IPR006110 InterPro:IPR006111 InterPro:IPR012293
InterPro:IPR020708 Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111
MGI:MGI:1349393 GO:GO:0005730 GO:GO:0003677 GO:GO:0004672
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 eggNOG:COG1758
HOGENOM:HOG000225272 HOVERGEN:HBG002375 OrthoDB:EOG4HT8TP
Gene3D:3.90.940.10 PANTHER:PTHR10773 SUPFAM:SSF63562 KO:K03014
GeneTree:ENSGT00390000010415 CTD:5435 OMA:EGQQANQ EMBL:AK007913
EMBL:BC024419 IPI:IPI00117503 RefSeq:NP_081507.1 UniGene:Mm.279861
ProteinModelPortal:P61219 SMR:P61219 STRING:P61219
PhosphoSite:P61219 PRIDE:P61219 Ensembl:ENSMUST00000040077
GeneID:69833 KEGG:mmu:69833 UCSC:uc007wst.1 InParanoid:P61219
NextBio:330441 Bgee:P61219 CleanEx:MM_POLR2F Genevestigator:P61219
GermOnline:ENSMUSG00000033020 Uniprot:P61219
Length = 127
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 64/77 (83%), Positives = 69/77 (89%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP IRRYL
Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110
Query: 99 PDGSYEDWGVDELIVED 115
PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIISD 127
>RGD|708567 [details] [associations]
symbol:Polr2f "polymerase (RNA) II (DNA directed) polypeptide F"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO;TAS] [GO:0004672 "protein kinase activity"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISO;ISS;TAS] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=TAS] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO;ISS;TAS] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=TAS] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0032774 "RNA biosynthetic
process" evidence=ISO] InterPro:IPR006110 InterPro:IPR006111
InterPro:IPR012293 InterPro:IPR020708 Pfam:PF01192
PIRSF:PIRSF000778 PROSITE:PS01111 RGD:708567 GO:GO:0003677
GO:GO:0004672 GO:GO:0006366 GO:GO:0006383 GO:GO:0006360
GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 GO:GO:0005665
eggNOG:COG1758 HOGENOM:HOG000225272 HOVERGEN:HBG002375
OrthoDB:EOG4HT8TP Gene3D:3.90.940.10 PANTHER:PTHR10773
SUPFAM:SSF63562 KO:K03014 GeneTree:ENSGT00390000010415 CTD:5435
OMA:EGQQANQ EMBL:AB017711 EMBL:BC083552 IPI:IPI00213283
RefSeq:NP_112625.1 UniGene:Rn.28212 ProteinModelPortal:O88828
SMR:O88828 STRING:O88828 PhosphoSite:O88828
Ensembl:ENSRNOT00000015009 GeneID:83503 KEGG:rno:83503
UCSC:RGD:708567 InParanoid:O88828 NextBio:615924
Genevestigator:O88828 GermOnline:ENSRNOG00000011214 Uniprot:O88828
Length = 127
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 64/77 (83%), Positives = 69/77 (89%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP IRRYL
Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110
Query: 99 PDGSYEDWGVDELIVED 115
PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIISD 127
>UNIPROTKB|F1ND65 [details] [associations]
symbol:POLR2F "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR006110
InterPro:IPR006111 InterPro:IPR012293 InterPro:IPR020708
Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111 GO:GO:0005730
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 Gene3D:3.90.940.10 PANTHER:PTHR10773 SUPFAM:SSF63562
GeneTree:ENSGT00390000010415 OMA:EGQQANQ EMBL:AADN02006169
EMBL:AADN02006167 EMBL:AADN02006168 IPI:IPI00821126
Ensembl:ENSGALT00000037843 Uniprot:F1ND65
Length = 135
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/77 (83%), Positives = 69/77 (89%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP IRRYL
Sbjct: 59 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 118
Query: 99 PDGSYEDWGVDELIVED 115
PDGSYEDWGVDELI+ D
Sbjct: 119 PDGSYEDWGVDELIITD 135
>UNIPROTKB|Q9PT88 [details] [associations]
symbol:RPB6 "RNA polymerase common subunit RPB6"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006110 InterPro:IPR006111 InterPro:IPR012293
InterPro:IPR020708 Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111
GO:GO:0005730 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG1758 HOGENOM:HOG000225272
HOVERGEN:HBG002375 OrthoDB:EOG4HT8TP Gene3D:3.90.940.10
PANTHER:PTHR10773 SUPFAM:SSF63562 KO:K03014
GeneTree:ENSGT00390000010415 CTD:5435 HSSP:P61218 EMBL:AADN02006169
EMBL:AADN02006167 EMBL:AADN02006168 EMBL:AJ251211 IPI:IPI00604258
RefSeq:NP_990065.1 UniGene:Gga.3737 SMR:Q9PT88 STRING:Q9PT88
Ensembl:ENSGALT00000020084 GeneID:395486 KEGG:gga:395486
InParanoid:Q9PT88 NextBio:20815566 Uniprot:Q9PT88
Length = 127
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/77 (83%), Positives = 69/77 (89%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP IRRYL
Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110
Query: 99 PDGSYEDWGVDELIVED 115
PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIITD 127
>UNIPROTKB|F2Z4C9 [details] [associations]
symbol:POLR2F "DNA-directed RNA polymerases I, II, and III
subunit RPABC2" species:9913 "Bos taurus" [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006110 InterPro:IPR006111
InterPro:IPR012293 InterPro:IPR020708 Pfam:PF01192
PIRSF:PIRSF000778 PROSITE:PS01111 GO:GO:0005730 GO:GO:0003677
GO:GO:0004672 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
UniGene:Bt.91103 Gene3D:3.90.940.10 PANTHER:PTHR10773
SUPFAM:SSF63562 KO:K03014 GeneTree:ENSGT00390000010415 CTD:5435
OMA:EGQQANQ EMBL:DAAA02014645 IPI:IPI01018597 RefSeq:NP_001032552.2
ProteinModelPortal:F2Z4C9 SMR:F2Z4C9 PRIDE:F2Z4C9
Ensembl:ENSBTAT00000006328 GeneID:534232 KEGG:bta:534232
NextBio:20876319 Uniprot:F2Z4C9
Length = 127
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/77 (83%), Positives = 69/77 (89%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP IRRYL
Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110
Query: 99 PDGSYEDWGVDELIVED 115
PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIITD 127
>UNIPROTKB|Q32PE0 [details] [associations]
symbol:POLR2F "DNA-directed RNA polymerases I, II, and III
subunit RPABC2" species:9913 "Bos taurus" [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006110 InterPro:IPR006111 InterPro:IPR012293
InterPro:IPR020708 Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111
GO:GO:0003677 GO:GO:0006468 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 EMBL:BC108153 IPI:IPI00710434 UniGene:Bt.91103
ProteinModelPortal:Q32PE0 SMR:Q32PE0 STRING:Q32PE0 eggNOG:COG1758
HOGENOM:HOG000225272 HOVERGEN:HBG002375 InParanoid:Q32PE0
OrthoDB:EOG4HT8TP Gene3D:3.90.940.10 PANTHER:PTHR10773
SUPFAM:SSF63562 Uniprot:Q32PE0
Length = 127
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/77 (83%), Positives = 69/77 (89%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP IRRYL
Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110
Query: 99 PDGSYEDWGVDELIVED 115
PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIITD 127
>UNIPROTKB|E2RPD9 [details] [associations]
symbol:POLR2F "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR006110
InterPro:IPR006111 InterPro:IPR012293 InterPro:IPR020708
Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111 GO:GO:0005730
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 Gene3D:3.90.940.10 PANTHER:PTHR10773 SUPFAM:SSF63562
KO:K03014 GeneTree:ENSGT00390000010415 CTD:5435 OMA:EGQQANQ
EMBL:AAEX03007324 RefSeq:XP_531740.1 ProteinModelPortal:E2RPD9
Ensembl:ENSCAFT00000002232 GeneID:474512 KEGG:cfa:474512
NextBio:20850510 Uniprot:E2RPD9
Length = 127
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/77 (83%), Positives = 69/77 (89%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP IRRYL
Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110
Query: 99 PDGSYEDWGVDELIVED 115
PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIITD 127
>UNIPROTKB|P61218 [details] [associations]
symbol:POLR2F "DNA-directed RNA polymerases I, II, and III
subunit RPABC2" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IDA;TAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR006110 InterPro:IPR006111 InterPro:IPR012293
InterPro:IPR020708 Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111
Reactome:REACT_116125 GO:GO:0016032 GO:GO:0005730 GO:GO:0003677
EMBL:CH471095 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788 EMBL:AL031587
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0006386 GO:GO:0006385 GO:GO:0005665
eggNOG:COG1758 HOGENOM:HOG000225272 HOVERGEN:HBG002375
OrthoDB:EOG4HT8TP Gene3D:3.90.940.10 PANTHER:PTHR10773
SUPFAM:SSF63562 KO:K03014 CTD:5435 EMBL:Z27113 EMBL:AF006501
EMBL:CR456546 EMBL:CR457021 EMBL:BC003582 IPI:IPI00015119
PIR:I38175 RefSeq:NP_068809.1 UniGene:Hs.436578 PDB:1QKL
PDBsum:1QKL ProteinModelPortal:P61218 SMR:P61218 IntAct:P61218
STRING:P61218 PhosphoSite:P61218 DMDM:47117761 PRIDE:P61218
DNASU:5435 Ensembl:ENST00000442738 GeneID:5435 KEGG:hsa:5435
UCSC:uc003aul.3 GeneCards:GC22P038348 HGNC:HGNC:9193 HPA:CAB009882
HPA:HPA000827 MIM:604414 neXtProt:NX_P61218 PharmGKB:PA33513
OMA:EGQQANQ PhylomeDB:P61218 ChiTaRS:POLR2F
EvolutionaryTrace:P61218 GenomeRNAi:5435 NextBio:21029
ArrayExpress:P61218 Bgee:P61218 CleanEx:HS_POLR2F
Genevestigator:P61218 GermOnline:ENSG00000100142 Uniprot:P61218
Length = 127
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/77 (83%), Positives = 69/77 (89%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP IRRYL
Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110
Query: 99 PDGSYEDWGVDELIVED 115
PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIITD 127
>UNIPROTKB|P61217 [details] [associations]
symbol:POLR2F "DNA-directed RNA polymerases I, II, and III
subunit RPABC2" species:10029 "Cricetulus griseus" [GO:0005634
"nucleus" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0004672 "protein kinase
activity" evidence=ISS] InterPro:IPR006110 InterPro:IPR006111
InterPro:IPR012293 InterPro:IPR020708 Pfam:PF01192
PIRSF:PIRSF000778 PROSITE:PS01111 GO:GO:0003677 GO:GO:0006468
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 HOVERGEN:HBG002375
OrthoDB:EOG4HT8TP Gene3D:3.90.940.10 PANTHER:PTHR10773
SUPFAM:SSF63562 EMBL:S69934 PIR:A56067 RefSeq:XP_003510326.1
ProteinModelPortal:P61217 SMR:P61217 PRIDE:P61217 GeneID:100754156
CTD:5435 Uniprot:P61217
Length = 127
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/77 (83%), Positives = 69/77 (89%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP IRRYL
Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110
Query: 99 PDGSYEDWGVDELIVED 115
PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIITD 127
>UNIPROTKB|Q5R592 [details] [associations]
symbol:POLR2F "DNA-directed RNA polymerases I, II, and III
subunit RPABC2" species:9601 "Pongo abelii" [GO:0005634 "nucleus"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0004672 "protein kinase
activity" evidence=ISS] InterPro:IPR006110 InterPro:IPR006111
InterPro:IPR012293 InterPro:IPR020708 Pfam:PF01192
PIRSF:PIRSF000778 PROSITE:PS01111 GO:GO:0005730 GO:GO:0003677
GO:GO:0004672 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
HOVERGEN:HBG002375 Gene3D:3.90.940.10 PANTHER:PTHR10773
SUPFAM:SSF63562 KO:K03014 GeneTree:ENSGT00390000010415 CTD:5435
OMA:EGQQANQ EMBL:CR860972 RefSeq:NP_001127626.1 UniGene:Pab.2710
ProteinModelPortal:Q5R592 SMR:Q5R592 PRIDE:Q5R592
Ensembl:ENSPPYT00000013710 GeneID:100174705 KEGG:pon:100174705
InParanoid:Q5R592 Uniprot:Q5R592
Length = 127
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/77 (83%), Positives = 69/77 (89%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP IRRYL
Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110
Query: 99 PDGSYEDWGVDELIVED 115
PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIITD 127
>SGD|S000006391 [details] [associations]
symbol:RPO26 "RNA polymerase subunit ABC23" species:4932
"Saccharomyces cerevisiae" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0030880 "RNA polymerase complex" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=IDA]
[GO:0001055 "RNA polymerase II activity" evidence=IDA] [GO:0001054
"RNA polymerase I activity" evidence=IC] [GO:0001056 "RNA
polymerase III activity" evidence=IC] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IDA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=IDA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=IMP] InterPro:IPR006110
InterPro:IPR006111 InterPro:IPR012293 InterPro:IPR020708
Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111 SGD:S000006391
GO:GO:0005737 GO:GO:0003677 GO:GO:0006366 EMBL:BK006949 EMBL:U25841
GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 Reactome:REACT_83470
GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9
PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC
PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y
PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5
PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY
PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ
PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO
PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX
PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y
PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14
PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R
PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F
PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93
PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83
PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S
PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF
PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W
PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H
PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7
PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY
PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM
PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ
PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP
PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW
PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N
PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2
PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14
PDBsum:3S15 PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N
PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B
PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G
PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M
PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS Reactome:REACT_87991
GO:GO:0042797 eggNOG:COG1758 HOGENOM:HOG000225272
Gene3D:3.90.940.10 PANTHER:PTHR10773 SUPFAM:SSF63562 KO:K03014
GeneTree:ENSGT00390000010415 OrthoDB:EOG4FR42D EMBL:X53288
EMBL:M33924 PIR:S13307 RefSeq:NP_015513.1 ProteinModelPortal:P20435
SMR:P20435 DIP:DIP-2194N IntAct:P20435 MINT:MINT-569579
STRING:P20435 PaxDb:P20435 PeptideAtlas:P20435 PRIDE:P20435
EnsemblFungi:YPR187W GeneID:856317 KEGG:sce:YPR187W CYGD:YPR187w
OMA:EDWSVEE EvolutionaryTrace:P20435 NextBio:981703
Genevestigator:P20435 GermOnline:YPR187W Uniprot:P20435
Length = 155
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 62/76 (81%), Positives = 68/76 (89%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP IRRYL
Sbjct: 79 RATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYL 138
Query: 99 PDGSYEDWGVDELIVE 114
PDGS+EDW V+ELIV+
Sbjct: 139 PDGSFEDWSVEELIVD 154
>UNIPROTKB|F1SKN8 [details] [associations]
symbol:POLR2F "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR006110 InterPro:IPR006111
InterPro:IPR012293 InterPro:IPR020708 Pfam:PF01192
PIRSF:PIRSF000778 PROSITE:PS01111 GO:GO:0005730 GO:GO:0003677
GO:GO:0004672 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
Gene3D:3.90.940.10 PANTHER:PTHR10773 SUPFAM:SSF63562
GeneTree:ENSGT00390000010415 OMA:EGQQANQ EMBL:FP326744
Ensembl:ENSSSCT00000000122 Uniprot:F1SKN8
Length = 129
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 65/79 (82%), Positives = 69/79 (87%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKEL--RERKIPFTIRR 96
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL R RKIP IRR
Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELNRRARKIPIIIRR 110
Query: 97 YLPDGSYEDWGVDELIVED 115
YLPDGSYEDWGVDELI+ D
Sbjct: 111 YLPDGSYEDWGVDELIISD 129
>FB|FBgn0003275 [details] [associations]
symbol:RpII18 "RNA polymerase II 18kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0007095 "mitotic G2 DNA
damage checkpoint" evidence=IGI] InterPro:IPR006110
InterPro:IPR006111 InterPro:IPR012293 InterPro:IPR020708
Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111 EMBL:AE014297
GO:GO:0007095 GO:GO:0003677 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 eggNOG:COG1758 Gene3D:3.90.940.10 PANTHER:PTHR10773
SUPFAM:SSF63562 KO:K03014 GeneTree:ENSGT00390000010415 EMBL:Z47726
EMBL:BT001786 PIR:S53013 RefSeq:NP_524910.1 UniGene:Dm.1757
ProteinModelPortal:Q24320 SMR:Q24320 DIP:DIP-17541N IntAct:Q24320
MINT:MINT-763095 STRING:Q24320 PaxDb:Q24320 PRIDE:Q24320
EnsemblMetazoa:FBtr0078787 GeneID:48312 KEGG:dme:Dmel_CG1163
CTD:48312 FlyBase:FBgn0003275 InParanoid:Q24320 OMA:SIDELIM
OrthoDB:EOG4PVMG7 PhylomeDB:Q24320 GenomeRNAi:48312 NextBio:839300
Bgee:Q24320 GermOnline:CG1163 Uniprot:Q24320
Length = 131
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 59/78 (75%), Positives = 71/78 (91%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP IRRYL
Sbjct: 54 RITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYL 113
Query: 99 PDGSYEDWGVDELIVEDS 116
PD SYEDW +DELI+ D+
Sbjct: 114 PDHSYEDWSIDELIMVDN 131
>POMBASE|SPCC1020.04c [details] [associations]
symbol:rpb6 "DNA-directed RNA polymerase I, II and III
subunit Rpb6" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IGI] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IGI] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IGI] [GO:0005829 "cytosol" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=IC]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IC] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IC] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IGI] InterPro:IPR006110 InterPro:IPR006111
InterPro:IPR012293 InterPro:IPR020708 Pfam:PF01192
PIRSF:PIRSF000778 PROSITE:PS01111 PomBase:SPCC1020.04c
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006366 GO:GO:0006383 GO:GO:0006354 GO:GO:0006360
GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 GO:GO:0005665 PDB:3H0G
PDBsum:3H0G eggNOG:COG1758 HOGENOM:HOG000225272 Gene3D:3.90.940.10
PANTHER:PTHR10773 SUPFAM:SSF63562 KO:K03014 EMBL:L00597 EMBL:L25592
PIR:T40837 RefSeq:NP_587956.1 ProteinModelPortal:P36595 SMR:P36595
IntAct:P36595 MINT:MINT-1214385 STRING:P36595
EnsemblFungi:SPCC1020.04c.1 GeneID:2539083 KEGG:spo:SPCC1020.04c
OMA:IPVNELM OrthoDB:EOG4FR42D EvolutionaryTrace:P36595
NextBio:20800255 Uniprot:P36595
Length = 142
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 60/74 (81%), Positives = 67/74 (90%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IAMKEL ++KIP +RRYL
Sbjct: 69 RTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYL 128
Query: 99 PDGSYEDWGVDELI 112
PDGSYEDW V ELI
Sbjct: 129 PDGSYEDWSVAELI 142
>DICTYBASE|DDB_G0291037 [details] [associations]
symbol:rpb6 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0030880 "RNA
polymerase complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006110 InterPro:IPR006111 InterPro:IPR012293
InterPro:IPR020708 Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111
dictyBase:DDB_G0291037 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GenomeReviews:CM000154_GR EMBL:AAFI02000174 GO:GO:0003899
eggNOG:COG1758 Gene3D:3.90.940.10 PANTHER:PTHR10773 SUPFAM:SSF63562
KO:K03014 GO:GO:0030880 RefSeq:XP_635429.1 HSSP:P61218
ProteinModelPortal:Q54FA8 SMR:Q54FA8 STRING:Q54FA8
EnsemblProtists:DDB0216272 GeneID:8627930 KEGG:ddi:DDB_G0291037
OMA:NAPIMVE ProtClustDB:CLSZ2846614 Uniprot:Q54FA8
Length = 133
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 58/75 (77%), Positives = 68/75 (90%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 98
RKT++YMTKYERAR+LG+RALQISMNAP+MVELEGETDPL+IA KELR +KIP IRR+L
Sbjct: 59 RKTTRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFL 118
Query: 99 PDGSYEDWGVDELIV 113
P+G YEDW VDEL +
Sbjct: 119 PNGMYEDWSVDELSI 133
>WB|WBGene00007355 [details] [associations]
symbol:rpb-6 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0032502 "developmental process" evidence=IMP]
InterPro:IPR006110 InterPro:IPR006111 InterPro:IPR012293
InterPro:IPR020708 Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0003677
GO:GO:0000003 InterPro:IPR018247 GO:GO:0006351 GO:GO:0003899
eggNOG:COG1758 HOGENOM:HOG000225272 Gene3D:3.90.940.10
PANTHER:PTHR10773 SUPFAM:SSF63562 KO:K03014 OMA:EHVTTPF
GO:GO:0030880 EMBL:Z49886 PIR:T18973 RefSeq:NP_496278.1
ProteinModelPortal:Q17684 SMR:Q17684 STRING:Q17684 PaxDb:Q17684
EnsemblMetazoa:C06A1.5 GeneID:174630 KEGG:cel:CELE_C06A1.5
CTD:174630 WormBase:C06A1.5 GeneTree:ENSGT00390000010415
InParanoid:Q17684 NextBio:884826 Uniprot:Q17684
Length = 137
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 57/77 (74%), Positives = 67/77 (87%)
Query: 41 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 100
T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL++R+IP +RRYLPD
Sbjct: 62 TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLPD 121
Query: 101 GSYEDWGVDELIVEDSW 117
GSYEDW D+L + D W
Sbjct: 122 GSYEDWPTDQLQLAD-W 137
>UNIPROTKB|Q17684 [details] [associations]
symbol:rpb-6 "Probable DNA-directed RNA polymerases I, II,
and III subunit RPABC2" species:6239 "Caenorhabditis elegans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0032502 "developmental
process" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR006110 InterPro:IPR006111 InterPro:IPR012293
InterPro:IPR020708 Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0003677
GO:GO:0000003 InterPro:IPR018247 GO:GO:0006351 GO:GO:0003899
eggNOG:COG1758 HOGENOM:HOG000225272 Gene3D:3.90.940.10
PANTHER:PTHR10773 SUPFAM:SSF63562 KO:K03014 OMA:EHVTTPF
GO:GO:0030880 EMBL:Z49886 PIR:T18973 RefSeq:NP_496278.1
ProteinModelPortal:Q17684 SMR:Q17684 STRING:Q17684 PaxDb:Q17684
EnsemblMetazoa:C06A1.5 GeneID:174630 KEGG:cel:CELE_C06A1.5
CTD:174630 WormBase:C06A1.5 GeneTree:ENSGT00390000010415
InParanoid:Q17684 NextBio:884826 Uniprot:Q17684
Length = 137
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 57/77 (74%), Positives = 67/77 (87%)
Query: 41 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 100
T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL++R+IP +RRYLPD
Sbjct: 62 TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLPD 121
Query: 101 GSYEDWGVDELIVEDSW 117
GSYEDW D+L + D W
Sbjct: 122 GSYEDWPTDQLQLAD-W 137
>UNIPROTKB|E3LFP4 [details] [associations]
symbol:Cre-rpb-6 "CRE-RPB-6 protein" species:31234
"Caenorhabditis remanei" [GO:0000003 "reproduction" evidence=ISS]
[GO:0032502 "developmental process" evidence=ISS] HAMAP:MF_00192
InterPro:IPR006110 InterPro:IPR006111 InterPro:IPR012293
InterPro:IPR020708 Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111
GO:GO:0003677 GO:GO:0000003 GO:GO:0006351 GO:GO:0032502
GO:GO:0003899 Gene3D:3.90.940.10 PANTHER:PTHR10773 SUPFAM:SSF63562
OMA:EHVTTPF GO:GO:0030880 EMBL:DS268408 RefSeq:XP_003116742.1
EnsemblMetazoa:CRE02215 GeneID:9822371 CTD:9822371 Uniprot:E3LFP4
Length = 137
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 57/77 (74%), Positives = 67/77 (87%)
Query: 41 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 100
T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL++R+IP IRRYLPD
Sbjct: 62 TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIIRRYLPD 121
Query: 101 GSYEDWGVDELIVEDSW 117
GSYEDW ++L + D W
Sbjct: 122 GSYEDWPTEQLQLAD-W 137
>UNIPROTKB|A8WSV7 [details] [associations]
symbol:rpb-6 "Probable DNA-directed RNA polymerases I, II,
and III subunit RPABC2" species:6238 "Caenorhabditis briggsae"
[GO:0000003 "reproduction" evidence=ISS] [GO:0032502 "developmental
process" evidence=ISS] InterPro:IPR006110 InterPro:IPR006111
InterPro:IPR012293 InterPro:IPR020708 Pfam:PF01192
PIRSF:PIRSF000778 PROSITE:PS01111 GO:GO:0005634 GO:GO:0003677
GO:GO:0000003 InterPro:IPR018247 GO:GO:0006351 EMBL:HE601438
GO:GO:0032502 GO:GO:0003899 eggNOG:COG1758 HOGENOM:HOG000225272
Gene3D:3.90.940.10 PANTHER:PTHR10773 SUPFAM:SSF63562
RefSeq:XP_002631259.1 ProteinModelPortal:A8WSV7 SMR:A8WSV7
STRING:A8WSV7 PRIDE:A8WSV7 EnsemblMetazoa:CBG03063 GeneID:8572774
KEGG:cbr:CBG03063 CTD:8572774 WormBase:CBG03063 KO:K03014
OMA:EHVTTPF GO:GO:0030880 Uniprot:A8WSV7
Length = 138
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 56/77 (72%), Positives = 67/77 (87%)
Query: 41 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 100
T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL++R++P IRRYLPD
Sbjct: 63 TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRVPIIIRRYLPD 122
Query: 101 GSYEDWGVDELIVEDSW 117
GSYEDW ++L + D W
Sbjct: 123 GSYEDWPTEQLQLAD-W 138
>GENEDB_PFALCIPARUM|PFC0155c [details] [associations]
symbol:PFC0155c "DNA-directed RNA polymerase
subunit I, putative" species:5833 "Plasmodium falciparum"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR006110 InterPro:IPR006111
InterPro:IPR012293 InterPro:IPR020708 Pfam:PF01192
PIRSF:PIRSF000778 PROSITE:PS01111 GO:GO:0003677 GO:GO:0006351
EMBL:AL844502 GO:GO:0003899 HOGENOM:HOG000225272 Gene3D:3.90.940.10
PANTHER:PTHR10773 SUPFAM:SSF63562 GO:GO:0030880
RefSeq:XP_001351108.2 ProteinModelPortal:O77315 IntAct:O77315
MINT:MINT-1580899 EnsemblProtists:PFC0155c:mRNA GeneID:814350
KEGG:pfa:PFC0155c EuPathDB:PlasmoDB:PF3D7_0303300
ProtClustDB:CLSZ2848510 Uniprot:O77315
Length = 153
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 50/91 (54%), Positives = 62/91 (68%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETD---------------PLEIAMK 83
R TS Y+TKYE+ARI+GTRALQISMNAP+ + +E D PL IA K
Sbjct: 63 RITSPYLTKYEKARIIGTRALQISMNAPLTIPIETSNDMINSKNEYDNYLNNDPLVIAEK 122
Query: 84 ELRERKIPFTIRRYLPDGSYEDWGVDELIVE 114
EL + IPF +RRYLP+GSYEDW +DELI++
Sbjct: 123 ELYNKSIPFILRRYLPNGSYEDWRLDELIID 153
>UNIPROTKB|B0QYL9 [details] [associations]
symbol:POLR2F "DNA-directed RNA polymerases I, II, and III
subunit RPABC2" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0030880 "RNA polymerase complex" evidence=IEA]
InterPro:IPR006110 InterPro:IPR006111 InterPro:IPR012293
InterPro:IPR020708 Pfam:PF01192 PROSITE:PS01111 GO:GO:0003677
GO:GO:0006351 EMBL:AL031587 GO:GO:0003899 HOGENOM:HOG000225272
OrthoDB:EOG4HT8TP Gene3D:3.90.940.10 PANTHER:PTHR10773
SUPFAM:SSF63562 GO:GO:0030880 HGNC:HGNC:9193 ChiTaRS:POLR2F
IPI:IPI00880079 SMR:B0QYL9 STRING:B0QYL9 Ensembl:ENST00000407936
Uniprot:B0QYL9
Length = 158
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 41/50 (82%), Positives = 44/50 (88%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRER 88
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL R
Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELNAR 100
>UNIPROTKB|B0QYL8 [details] [associations]
symbol:POLR2F "DNA-directed RNA polymerases I, II, and III
subunit RPABC2" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0030880 "RNA polymerase complex" evidence=IEA]
InterPro:IPR006110 InterPro:IPR006111 InterPro:IPR012293
InterPro:IPR020708 Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111
GO:GO:0003677 GO:GO:0006351 EMBL:AL031587 GO:GO:0003899
HOGENOM:HOG000225272 Gene3D:3.90.940.10 PANTHER:PTHR10773
SUPFAM:SSF63562 GO:GO:0030880 HGNC:HGNC:9193 ChiTaRS:POLR2F
IPI:IPI00877920 SMR:B0QYL8 STRING:B0QYL8 Ensembl:ENST00000405557
Uniprot:B0QYL8
Length = 126
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 40/48 (83%), Positives = 44/48 (91%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR 86
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+
Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELK 98
>UNIPROTKB|F8WC47 [details] [associations]
symbol:POLR2F "DNA-directed RNA polymerases I, II, and III
subunit RPABC2" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0030880 "RNA polymerase complex" evidence=IEA]
InterPro:IPR006110 InterPro:IPR006111 InterPro:IPR012293
InterPro:IPR020708 Pfam:PF01192 PIRSF:PIRSF000778 PROSITE:PS01111
GO:GO:0003677 GO:GO:0006351 EMBL:AL031587 GO:GO:0003899
Gene3D:3.90.940.10 PANTHER:PTHR10773 SUPFAM:SSF63562 GO:GO:0030880
HGNC:HGNC:9193 ChiTaRS:POLR2F IPI:IPI00879602
ProteinModelPortal:F8WC47 SMR:F8WC47 Ensembl:ENST00000443002
ArrayExpress:F8WC47 Bgee:F8WC47 Uniprot:F8WC47
Length = 111
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 40/47 (85%), Positives = 43/47 (91%)
Query: 39 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKEL 85
R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL
Sbjct: 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKEL 97
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 124 94 0.00091 102 3 11 22 0.39 30
29 0.42 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 528 (56 KB)
Total size of DFA: 106 KB (2073 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.78u 0.07s 9.85t Elapsed: 00:00:03
Total cpu time: 9.79u 0.07s 9.86t Elapsed: 00:00:03
Start: Fri May 10 19:18:53 2013 End: Fri May 10 19:18:56 2013