BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033232
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1,
chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1
Length = 387
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 76/102 (74%), Positives = 88/102 (86%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
MWLD+DN +KPIYLYINS GTQNEK E+VG+ET+AYAIAD ++YCKS VYT+NCGMA+GQ
Sbjct: 201 MWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQ 260
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKV 102
AAMLLS+G KGYR +QP+SSTKLYLP V RSSG DMW K
Sbjct: 261 AAMLLSLGKKGYRAVQPHSSTKLYLPKVNRSSGAAIDMWIKA 302
>sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4,
chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1
Length = 305
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L +++ KPIYLYINS+GT + E +G +T+A+AI D M Y K ++T+ G A+G+
Sbjct: 135 LYLQYEDEEKPIYLYINSTGT-TKNGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGE 193
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
AA+LL+ GAKG R P+S+ + P + R G TD+
Sbjct: 194 AALLLTAGAKGNRSALPSSTIMIKQP-IARFQGQATDV 230
>sp|Q9L4P4|CLPR_SYNE7 Putative ATP-dependent Clp protease proteolytic subunit-like
OS=Synechococcus elongatus (strain PCC 7942) GN=clpR
PE=3 SV=1
Length = 228
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+FDN KPIY YINS+GT +++G ET+A+AI D M Y K V+T+ G A G
Sbjct: 64 LYLEFDNPEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICIGQAMGT 123
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
AAM+LS G G R P+++ L P G + G +D+
Sbjct: 124 AAMILSGGTPGNRASLPHATIVLNQPRTG-AQGQASDI 160
>sp|P74466|CLPR_SYNY3 Putative ATP-dependent Clp protease proteolytic subunit-like
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpR
PE=3 SV=1
Length = 225
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L FD+ KPIY YINS+GT ++VG ET+A+AI D + Y K V+T+ G A G
Sbjct: 62 LYLQFDDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGT 121
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
AAM+LS G KGYR P+++ L G + G TD+
Sbjct: 122 AAMILSSGTKGYRASLPHATIVLNQNRTG-AQGQATDI 158
>sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3,
chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1
Length = 330
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
M+L + + +PIY+YINS+GT + E+VG E++ +AI D++ K++V+TV G A GQ
Sbjct: 151 MYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQ 210
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSG--PVTDM 98
A +LLS G KG R + P++ + P V SSG P +D+
Sbjct: 211 ACLLLSAGTKGKRFMMPHAKAMIQQPRVP-SSGLMPASDV 249
>sp|Q3ALC4|CLPP3_SYNSC ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus
sp. (strain CC9605) GN=clpP3 PE=3 SV=1
Length = 200
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD +++SKPIYLYINS G G+ T AI D + Y KS+V T+ G+A
Sbjct: 52 LYLDSEDSSKPIYLYINSPG---------GSVTAGLAIYDTIQYVKSEVVTICVGLAASM 102
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ G KG R P+S ++ P+ G S +D+
Sbjct: 103 GAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQASDI 140
>sp|Q3AVC3|CLPP3_SYNS9 ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus
sp. (strain CC9902) GN=clpP3 PE=3 SV=1
Length = 200
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD +++SKPIYLYINS G G+ T AI D + Y KS+V T+ G+A
Sbjct: 52 LYLDSEDSSKPIYLYINSPG---------GSVTAGLAIYDTIQYVKSEVVTICVGLAASM 102
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ G KG R P+S ++ P+ G S +D+
Sbjct: 103 GAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQASDI 140
>sp|Q319H4|CLPP2_PROM9 ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus
marinus (strain MIT 9312) GN=clpP2 PE=3 SV=1
Length = 203
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD D+ SKPIYLYINS G G+ T AI D + Y KS V T+ G+A
Sbjct: 52 LYLDSDDNSKPIYLYINSPG---------GSVTAGLAIYDTIKYVKSDVVTICVGLAASM 102
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ G KG R P+S ++ P+ G S +D+
Sbjct: 103 GAFLLAAGTKGKRVALPHSRIMIHQPLGGTSQRQASDI 140
>sp|Q7U5Q2|CLPP3_SYNPX ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus
sp. (strain WH8102) GN=clpP3 PE=3 SV=1
Length = 200
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD +++SKPIYLYINS G G+ T AI D + Y KS+V T+ G+A
Sbjct: 52 LYLDSEDSSKPIYLYINSPG---------GSVTAGLAIYDTIQYVKSEVVTICVGLAASM 102
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ G KG R P+S ++ P+ G S +D+
Sbjct: 103 GAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQASDI 140
>sp|Q46JF7|CLPP2_PROMT ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus
marinus (strain NATL2A) GN=clpP2 PE=3 SV=1
Length = 200
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD +++SKPIYLYINS G G+ T AI D M Y KS + T+ G+A
Sbjct: 52 LYLDSEDSSKPIYLYINSPG---------GSVTAGLAIYDTMKYVKSDLVTICVGLAASM 102
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LLS G KG R P+S ++ P+ G + +D+
Sbjct: 103 GAFLLSAGTKGKRLALPHSRIMIHQPLGGTAQRQASDI 140
>sp|Q7V0F1|CLPP2_PROMP ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4)
GN=clpP2 PE=3 SV=1
Length = 201
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD D+ +KPIYLYINS G G+ T AI D + Y KS V T+ G+A
Sbjct: 52 LYLDSDDNTKPIYLYINSPG---------GSVTAGLAIYDTIKYVKSDVVTICVGLAASM 102
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL G KG R P+S ++ P+ G S +D+
Sbjct: 103 GAFLLGAGTKGKRVALPHSRIMIHQPLGGTSQRQASDI 140
>sp|Q7V8M4|CLPP2_PROMM ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus
marinus (strain MIT 9313) GN=clpP2 PE=3 SV=1
Length = 200
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD ++++KPIYLYINS G G+ T AI D M Y KS V T+ G+A
Sbjct: 52 LYLDSEDSTKPIYLYINSPG---------GSVTAGLAIYDTMKYVKSDVVTICVGLAASM 102
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ G KG R P+S ++ P+ G + +D+
Sbjct: 103 GAFLLTAGTKGKRLALPHSRIMIHQPLGGTNQRQASDI 140
>sp|Q7VAR9|CLPP2_PROMA ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=clpP2 PE=3
SV=1
Length = 200
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD ++++KPIYLYINS G G+ T AI D M Y KS V T+ G+A
Sbjct: 52 LYLDSEDSTKPIYLYINSPG---------GSVTAGLAIYDTMKYVKSDVVTICVGLAASM 102
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LLS G K R P+S ++ P+ G S +D+
Sbjct: 103 GAFLLSAGTKNKRLALPHSRIMIHQPLGGTSQRQASDI 140
>sp|P74467|CLPP3_SYNY3 Probable ATP-dependent Clp protease proteolytic subunit 3
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpP3
PE=3 SV=1
Length = 202
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD D+ SKPIYLYINS G G+ T AI D M Y K++V T+ G+A
Sbjct: 52 LYLDSDDPSKPIYLYINSPG---------GSVTAGMAIYDTMQYIKAEVITICVGLAASM 102
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ GA G R P++ ++ P+ G TD+
Sbjct: 103 GAFLLASGAPGKRLALPHARIMIHQPMGGTGRRQATDI 140
>sp|Q9L4P3|CLPP3_SYNE7 ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus
elongatus (strain PCC 7942) GN=clpP3 PE=3 SV=1
Length = 199
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD +++SKPIYLYINS G G+ T AI D M Y KS V T+ G+A
Sbjct: 52 LYLDSEDSSKPIYLYINSPG---------GSVTAGMAIYDTMQYIKSPVITICLGLAASM 102
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL G+KG R P+S ++ P+ G +D+
Sbjct: 103 GAFLLCAGSKGKRLALPHSRIMIHQPLGGTGRRQASDI 140
>sp|Q5N1Q7|CLPP2_SYNP6 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=clpP2 PE=3 SV=1
Length = 199
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD +++SKPIYLYINS G G+ T AI D M Y KS V T+ G+A
Sbjct: 52 LYLDSEDSSKPIYLYINSPG---------GSVTAGMAIYDTMQYIKSPVITICLGLAASM 102
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL G+KG R P+S ++ P+ G +D+
Sbjct: 103 GAFLLCAGSKGKRLALPHSRIMIHQPLGGTGRRQASDI 140
>sp|Q7NEW1|CLPP2_GLOVI ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter
violaceus (strain PCC 7421) GN=clpP2 PE=3 SV=1
Length = 218
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ +KPI +YINS G G ET A+A+ D M + + + T+ G+A G
Sbjct: 58 LYLESEDNAKPIEIYINSPGV-------AGFETSAFAVYDTMRHVRMPIKTICLGLAGGF 110
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
+A+L++ G KG R PNS LY P G + G TD+
Sbjct: 111 SALLMAAGTKGQRMSLPNSRIILYQP-YGGARGQATDI 147
>sp|A4XHW0|CLPP_CALS8 ATP-dependent Clp protease proteolytic subunit
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=clpP PE=3 SV=1
Length = 195
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K IYLYINS G G+ T +AI D + Y K V T+ GMA
Sbjct: 50 LFLEAEDPDKDIYLYINSPG---------GSVTAGFAIYDTIQYIKPDVSTICVGMAASM 100
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ GAKG R PNS ++ P +G G TD+
Sbjct: 101 GAFLLAAGAKGKRFALPNSEIMIHQP-IGGVRGQATDI 137
>sp|A8F754|CLPP_THELT ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)
GN=clpP PE=3 SV=1
Length = 199
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K I LYINS G G+ T AI D M Y KS V T+ G A
Sbjct: 53 LFLEAEDPDKDIQLYINSPG---------GSVTAGLAIYDTMQYIKSDVVTICVGQAASM 103
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
AA+LL+ G KG R PN+ L+ P +G + GPV D+
Sbjct: 104 AAVLLASGTKGKRFALPNARIMLHQP-LGGAEGPVKDV 140
>sp|Q5FL55|CLPP_LACAC ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus
acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)
GN=clpP PE=3 SV=1
Length = 195
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD + +K I LYINS G G T AI D M + KS V T+ GMA
Sbjct: 48 LFLDAQDNTKDISLYINSPG---------GVITSGLAIMDTMNFIKSDVSTIAIGMAASM 98
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMW 99
A++LL+ G KG R PNS+ ++ P +G + G TD+
Sbjct: 99 ASILLTSGTKGKRFALPNSTVLIHQP-LGGAQGQQTDIQ 136
>sp|A8YUD9|CLPP_LACH4 ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus
helveticus (strain DPC 4571) GN=clpP PE=3 SV=1
Length = 194
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD + +K I LYINS G G T AI D M + KS V T+ GMA
Sbjct: 48 LFLDAQDNTKDISLYINSPG---------GVITSGLAIMDTMNFIKSDVSTIAIGMAASM 98
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMW 99
A++LL+ G KG R PNS+ ++ P +G + G TD+
Sbjct: 99 ASILLTSGTKGKRFALPNSTVLIHQP-LGGAQGQQTDIQ 136
>sp|B0K533|CLPP_THEPX ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3
SV=1
Length = 195
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K I+LYINS G G+ T +AI D M Y K V T+ GMA
Sbjct: 49 LFLEAEDPDKDIWLYINSPG---------GSITAGFAIYDTMQYIKPDVVTLCVGMAASM 99
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
AA LL+ GAKG R PNS ++ P +G G TD+
Sbjct: 100 AAFLLAAGAKGKRFALPNSEIMIHQP-LGGMQGQATDI 136
>sp|B0KBA4|CLPP_THEP3 ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=clpP PE=3 SV=1
Length = 195
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K I+LYINS G G+ T +AI D M Y K V T+ GMA
Sbjct: 49 LFLEAEDPDKDIWLYINSPG---------GSITAGFAIYDTMQYIKPDVVTLCVGMAASM 99
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
AA LL+ GAKG R PNS ++ P +G G TD+
Sbjct: 100 AAFLLAAGAKGKRFALPNSEIMIHQP-LGGMQGQATDI 136
>sp|Q74K84|CLPP_LACJO ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus
johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=clpP
PE=3 SV=1
Length = 195
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD + +K I LYINS G G T AI D M + KS V T+ GMA
Sbjct: 48 LFLDAQDNTKDISLYINSPG---------GVITSGLAIMDTMNFIKSDVSTIAIGMAASM 98
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMW 99
A++LL+ G KG R PNS+ ++ P +G + G TD+
Sbjct: 99 ASILLTSGTKGKRFALPNSTVLIHQP-LGGAQGQQTDIQ 136
>sp|Q042E8|CLPP_LACGA ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus
gasseri (strain ATCC 33323 / DSM 20243) GN=clpP PE=3
SV=1
Length = 195
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD + +K I LYINS G G T AI D M + KS V T+ GMA
Sbjct: 48 LFLDAQDNTKDISLYINSPG---------GVITSGLAIMDTMNFIKSDVSTIAIGMAASM 98
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMW 99
A++LL+ G KG R PNS+ ++ P +G + G TD+
Sbjct: 99 ASILLTSGTKGKRFALPNSTVLIHQP-LGGAQGQQTDIQ 136
>sp|Q6MH11|CLPP_BDEBA ATP-dependent Clp protease proteolytic subunit OS=Bdellovibrio
bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529
/ HD100) GN=clpP PE=3 SV=1
Length = 212
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ DN KPI+LYINS G G+ + AI D M + K V T GMA
Sbjct: 60 LFLEVDNPEKPIHLYINSPG---------GSVSAGLAIYDFMQFVKCDVATYCMGMAASM 110
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVV--GRSSGPVTDMW---RKVFPTFLLLSFLYYP 115
++LL+ G KG R PN+ ++ P++ G SG VTD+ +++ T L+ +Y
Sbjct: 111 GSLLLTAGTKGMRYSLPNTRIMIHQPLLSGGGLSGQVTDIEIHAKELVKTKEKLTRIYET 170
Query: 116 QSFSHYISL 124
+ Y +L
Sbjct: 171 HTGRDYDTL 179
>sp|Q38Y96|CLPP_LACSS ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus
sakei subsp. sakei (strain 23K) GN=clpP PE=3 SV=1
Length = 194
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD ++ K I +YINS G G+ T AI D M + KS V T+ GMA
Sbjct: 48 LFLDAQDSDKDISIYINSPG---------GSVTAGLAIMDTMNFIKSDVQTIAMGMAASM 98
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMW---RKVFPT 105
A++LLS G KG R PNS+ ++ P +G + G T++ R++ T
Sbjct: 99 ASVLLSAGTKGKRFALPNSTVLIHQP-LGGAQGQQTEIEIAAREILKT 145
>sp|A3DJ10|CLPP_CLOTH ATP-dependent Clp protease proteolytic subunit OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=clpP PE=3
SV=1
Length = 194
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K I LYINS G G+ T +AI D M Y K V T+ GMA
Sbjct: 49 LFLEAEDPDKDIQLYINSPG---------GSVTAGFAIYDTMQYVKPDVSTICIGMAASM 99
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ GAKG R PNS ++ P +G + G TD+
Sbjct: 100 GAFLLAAGAKGKRFALPNSEIMIHQP-LGGARGQATDI 136
>sp|B1L812|CLPP_THESQ ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp.
(strain RQ2) GN=clpP PE=3 SV=1
Length = 203
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K +YLYINS G G+ T AI D M Y K V T+ G A
Sbjct: 58 LFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASM 108
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
AA+LL+ GAKG R PN+ ++ P +G + GP D+
Sbjct: 109 AAVLLAAGAKGKRYALPNARIMIHQP-LGGAEGPAKDV 145
>sp|A5IJ91|CLPP_THEP1 ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=clpP PE=3 SV=1
Length = 203
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K +YLYINS G G+ T AI D M Y K V T+ G A
Sbjct: 58 LFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASM 108
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
AA+LL+ GAKG R PN+ ++ P +G + GP D+
Sbjct: 109 AAVLLAAGAKGKRYALPNARIMIHQP-LGGAEGPAKDV 145
>sp|Q9WZF9|CLPP_THEMA ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=clpP PE=3 SV=1
Length = 203
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K +YLYINS G G+ T AI D M Y K V T+ G A
Sbjct: 58 LFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASM 108
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
AA+LL+ GAKG R PN+ ++ P +G + GP D+
Sbjct: 109 AAVLLAAGAKGKRYALPNARIMIHQP-LGGAEGPAKDV 145
>sp|A5N2K8|CLPP_CLOK5 ATP-dependent Clp protease proteolytic subunit OS=Clostridium
kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
GN=clpP PE=3 SV=1
Length = 194
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ +N K IY YINS G G+ T AI D M Y KS V T+ GMA
Sbjct: 49 LFLEAENPDKDIYFYINSPG---------GSITAGMAIYDTMQYIKSDVSTICIGMAASM 99
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ G KG R PNS ++ P +G G TD+
Sbjct: 100 GAFLLAAGEKGKRFALPNSEIMIHQP-LGGFQGQATDI 136
>sp|B9E685|CLPP_CLOK1 ATP-dependent Clp protease proteolytic subunit OS=Clostridium
kluyveri (strain NBRC 12016) GN=clpP PE=3 SV=1
Length = 194
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ +N K IY YINS G G+ T AI D M Y KS V T+ GMA
Sbjct: 49 LFLEAENPDKDIYFYINSPG---------GSITAGMAIYDTMQYIKSDVSTICIGMAASM 99
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ G KG R PNS ++ P +G G TD+
Sbjct: 100 GAFLLAAGEKGKRFALPNSEIMIHQP-LGGFQGQATDI 136
>sp|A0Q2L1|CLPP_CLONN ATP-dependent Clp protease proteolytic subunit OS=Clostridium novyi
(strain NT) GN=clpP PE=3 SV=1
Length = 195
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K IYLYINS G G+ T AI D M Y K V T+ GMA
Sbjct: 49 LFLEAEDPDKDIYLYINSPG---------GSITAGMAIYDTMQYIKPDVSTICIGMAASM 99
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ GAKG R PNS ++ P +G G TD+
Sbjct: 100 GAFLLTAGAKGKRFALPNSEIMIHQP-LGGFQGQATDI 136
>sp|Q9FN42|CLPP2_ARATH ATP-dependent Clp protease proteolytic subunit 2, mitochondrial
OS=Arabidopsis thaliana GN=CLPP2 PE=1 SV=1
Length = 241
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ +N SKPI++Y+NS G G T AI D M Y +S + T+ G A
Sbjct: 78 LYLESENPSKPIHMYLNSPG---------GHVTAGLAIYDTMQYIRSPISTICLGQAASM 128
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89
A++LL+ GAKG R PN++ ++ P G
Sbjct: 129 ASLLLAAGAKGQRRSLPNATVMIHQPSGG 157
>sp|Q9K888|CLPP2_BACHD ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=clpP2 PE=3 SV=1
Length = 194
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ +N K IYLYINS G G+ + +AI D M + K ++T+ GMA
Sbjct: 50 LFLEAENPKKDIYLYINSPG---------GSTSAGFAIYDTMQFVKPSIHTICTGMAASF 100
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
AA+LL G KG R PNS ++ P G + G +D+
Sbjct: 101 AAILLLAGTKGKRFALPNSEIMIHQP-SGGAQGQASDL 137
>sp|Q93AD7|CLPP_CYAP8 ATP-dependent Clp protease proteolytic subunit OS=Cyanothece sp.
(strain PCC 8801) GN=clpP PE=3 SV=1
Length = 199
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD ++ KPIYLYINS G G+ T AI D M Y KS V T+ G+A
Sbjct: 52 LYLDSEDPGKPIYLYINSPG---------GSVTAGMAIYDTMQYIKSDVITICVGLAASM 102
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ G G R P++ ++ P+ G TD+
Sbjct: 103 GAFLLASGTPGKRLALPHARIMIHQPMGGTGRRQATDI 140
>sp|Q891J7|CLPP_CLOTE ATP-dependent Clp protease proteolytic subunit OS=Clostridium
tetani (strain Massachusetts / E88) GN=clpP PE=3 SV=2
Length = 194
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K I+LYINS G G+ T AI D M Y K V T+ GMA
Sbjct: 49 LFLEAEDPDKDIFLYINSPG---------GSITSGMAIYDTMQYIKPDVSTICIGMAASM 99
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ GAKG R PNS ++ P +G G TD+
Sbjct: 100 GAFLLAAGAKGKRFALPNSEIMIHQP-LGGFQGQATDI 136
>sp|A7GIH2|CLPP_CLOBL ATP-dependent Clp protease proteolytic subunit OS=Clostridium
botulinum (strain Langeland / NCTC 10281 / Type F)
GN=clpP PE=3 SV=1
Length = 194
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K I+LYINS G G+ T AI D M Y K V T+ GMA
Sbjct: 49 LFLEAEDPDKDIHLYINSPG---------GSITSGMAIYDTMQYIKPDVSTICVGMAASM 99
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ GAKG R PNS ++ P +G G TD+
Sbjct: 100 GAFLLAAGAKGKRYALPNSEVMIHQP-LGGFRGQATDI 136
>sp|B1IND7|CLPP_CLOBK ATP-dependent Clp protease proteolytic subunit OS=Clostridium
botulinum (strain Okra / Type B1) GN=clpP PE=3 SV=1
Length = 194
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K I+LYINS G G+ T AI D M Y K V T+ GMA
Sbjct: 49 LFLEAEDPDKDIHLYINSPG---------GSITSGMAIYDTMQYIKPDVSTICVGMAASM 99
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ GAKG R PNS ++ P +G G TD+
Sbjct: 100 GAFLLAAGAKGKRYALPNSEVMIHQP-LGGFRGQATDI 136
>sp|C1FLA6|CLPP_CLOBJ ATP-dependent Clp protease proteolytic subunit OS=Clostridium
botulinum (strain Kyoto / Type A2) GN=clpP PE=3 SV=1
Length = 194
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K I+LYINS G G+ T AI D M Y K V T+ GMA
Sbjct: 49 LFLEAEDPDKDIHLYINSPG---------GSITSGMAIYDTMQYIKPDVSTICVGMAASM 99
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ GAKG R PNS ++ P +G G TD+
Sbjct: 100 GAFLLAAGAKGKRYALPNSEVMIHQP-LGGFRGQATDI 136
>sp|A5I6W1|CLPP_CLOBH ATP-dependent Clp protease proteolytic subunit OS=Clostridium
botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type
A) GN=clpP PE=3 SV=1
Length = 194
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K I+LYINS G G+ T AI D M Y K V T+ GMA
Sbjct: 49 LFLEAEDPDKDIHLYINSPG---------GSITSGMAIYDTMQYIKPDVSTICVGMAASM 99
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ GAKG R PNS ++ P +G G TD+
Sbjct: 100 GAFLLAAGAKGKRYALPNSEVMIHQP-LGGFRGQATDI 136
>sp|A7FYI2|CLPP_CLOB1 ATP-dependent Clp protease proteolytic subunit OS=Clostridium
botulinum (strain ATCC 19397 / Type A) GN=clpP PE=3 SV=1
Length = 194
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K I+LYINS G G+ T AI D M Y K V T+ GMA
Sbjct: 49 LFLEAEDPDKDIHLYINSPG---------GSITSGMAIYDTMQYIKPDVSTICVGMAASM 99
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LL+ GAKG R PNS ++ P +G G TD+
Sbjct: 100 GAFLLAAGAKGKRYALPNSEVMIHQP-LGGFRGQATDI 136
>sp|A1VXS0|CLPP_CAMJJ ATP-dependent Clp protease proteolytic subunit OS=Campylobacter
jejuni subsp. jejuni serotype O:23/36 (strain 81-176)
GN=clpP PE=3 SV=1
Length = 194
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ +K IYLYINS G G T ++I D M Y K V T+ G A
Sbjct: 48 LFLEAEDPTKDIYLYINSPG---------GVITSGFSIYDTMNYIKPDVCTICIGQAASM 98
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LLS GA+G R PNS ++ P +G + G TD+
Sbjct: 99 GAFLLSCGAEGKRFALPNSRIMIHQP-LGGARGQATDI 135
>sp|Q24S49|CLPP2_DESHY ATP-dependent Clp protease proteolytic subunit 2
OS=Desulfitobacterium hafniense (strain Y51) GN=clpP2
PE=3 SV=1
Length = 202
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ K I+LYINS G G+ + AI D M Y ++ V+T+ G+A
Sbjct: 50 LFLEAEDPEKDIFLYINSPG---------GSISAGMAIYDTMQYIRADVHTICVGLAASM 100
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89
A LL+ GAKG R PN+ ++ P++G
Sbjct: 101 GAFLLTAGAKGKRQALPNAEILIHQPLIG 129
>sp|B3WCR2|CLPP_LACCB ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus
casei (strain BL23) GN=clpP PE=3 SV=1
Length = 196
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD ++ K IYLYINS G G T A+ D M + KS V T+ GMA
Sbjct: 48 LFLDAQDSEKDIYLYINSPG---------GVITSGLAMLDTMNFIKSDVQTIAIGMAASM 98
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A++LL+ G KG R PNS+ ++ P G + G T++
Sbjct: 99 ASVLLAGGTKGKRFALPNSTILIHQP-SGGAQGQQTEI 135
>sp|Q03AL0|CLPP_LACC3 ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus
casei (strain ATCC 334) GN=clpP PE=3 SV=1
Length = 196
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++LD ++ K IYLYINS G G T A+ D M + KS V T+ GMA
Sbjct: 48 LFLDAQDSEKDIYLYINSPG---------GVITSGLAMLDTMNFIKSDVQTIAIGMAASM 98
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A++LL+ G KG R PNS+ ++ P G + G T++
Sbjct: 99 ASVLLAGGTKGKRFALPNSTILIHQP-SGGAQGQQTEI 135
>sp|Q5HWX6|CLPP_CAMJR ATP-dependent Clp protease proteolytic subunit OS=Campylobacter
jejuni (strain RM1221) GN=clpP PE=3 SV=1
Length = 194
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ +K IYLYINS G G T ++I D M Y K V T+ G A
Sbjct: 48 LFLEAEDPTKDIYLYINSPG---------GVITSGFSIYDTMNYIKPDVCTICIGQAASM 98
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LLS GA+G R PNS ++ P +G + G TD+
Sbjct: 99 GAFLLSCGAEGKRFALPNSRIMIHQP-LGGARGQATDI 135
>sp|P54413|CLPP_CAMJE ATP-dependent Clp protease proteolytic subunit OS=Campylobacter
jejuni subsp. jejuni serotype O:2 (strain NCTC 11168)
GN=clpP PE=3 SV=2
Length = 194
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ +K IYLYINS G G T ++I D M Y K V T+ G A
Sbjct: 48 LFLEAEDPTKDIYLYINSPG---------GVITSGFSIYDTMNYIKPDVCTICIGQAASM 98
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LLS GA+G R PNS ++ P +G + G TD+
Sbjct: 99 GAFLLSCGAEGKRFALPNSRIMIHQP-LGGARGQATDI 135
>sp|A7H1R0|CLPP_CAMJD ATP-dependent Clp protease proteolytic subunit OS=Campylobacter
jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 /
269.97) GN=clpP PE=3 SV=1
Length = 194
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQ 60
++L+ ++ +K IYLYINS G G T ++I D M Y K V T+ G A
Sbjct: 48 LFLEAEDPTKDIYLYINSPG---------GVITSGFSIYDTMNYIKPDVCTICIGQAASM 98
Query: 61 AAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDM 98
A LLS GA+G R PNS ++ P +G + G TD+
Sbjct: 99 GAFLLSCGAEGKRFALPNSRIMIHQP-LGGARGQATDI 135
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,594,523
Number of Sequences: 539616
Number of extensions: 1499101
Number of successful extensions: 4659
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 3549
Number of HSP's gapped (non-prelim): 743
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)