Query 033232
Match_columns 124
No_of_seqs 112 out of 1047
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 11:25:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0740 ClpP Protease subunit 100.0 5.9E-42 1.3E-46 267.1 9.9 110 1-122 49-158 (200)
2 KOG0840 ATP-dependent Clp prot 100.0 3.7E-42 8.1E-47 276.3 8.8 111 1-123 114-224 (275)
3 PRK12552 ATP-dependent Clp pro 100.0 3.2E-41 6.9E-46 266.5 11.2 120 1-123 62-181 (222)
4 PRK14513 ATP-dependent Clp pro 100.0 1E-38 2.3E-43 248.7 11.5 110 1-122 49-158 (201)
5 PRK14514 ATP-dependent Clp pro 100.0 1.7E-38 3.7E-43 250.7 10.1 110 1-122 76-185 (221)
6 PRK12551 ATP-dependent Clp pro 100.0 8.4E-38 1.8E-42 242.6 10.3 110 1-122 47-156 (196)
7 CHL00028 clpP ATP-dependent Cl 100.0 2E-37 4.3E-42 241.0 10.9 111 1-123 52-163 (200)
8 PRK14512 ATP-dependent Clp pro 100.0 2.7E-34 5.9E-39 222.5 10.8 110 1-122 45-154 (197)
9 TIGR00493 clpP ATP-dependent C 100.0 9.3E-34 2E-38 218.2 10.5 110 1-122 48-157 (191)
10 PRK00277 clpP ATP-dependent Cl 100.0 1.2E-31 2.6E-36 207.5 11.0 110 1-122 53-162 (200)
11 PRK12553 ATP-dependent Clp pro 100.0 3E-31 6.6E-36 206.4 9.4 110 2-122 58-168 (207)
12 cd07013 S14_ClpP Caseinolytic 100.0 8.1E-31 1.8E-35 196.6 10.8 110 2-123 23-132 (162)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 6.3E-30 1.4E-34 192.7 8.6 110 2-123 32-141 (171)
14 PF00574 CLP_protease: Clp pro 100.0 3.2E-30 6.8E-35 194.2 6.2 109 2-122 39-147 (182)
15 cd07016 S14_ClpP_1 Caseinolyti 99.9 4.9E-22 1.1E-26 146.9 11.0 104 5-122 26-129 (160)
16 cd07015 Clp_protease_NfeD Nodu 99.8 4.2E-19 9.1E-24 135.6 10.9 92 7-111 28-127 (172)
17 cd00394 Clp_protease_like Case 99.6 1.2E-15 2.7E-20 112.1 9.7 97 4-112 24-122 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.6 8.7E-15 1.9E-19 111.5 10.5 70 7-87 28-100 (187)
19 cd07021 Clp_protease_NfeD_like 99.5 1.4E-13 3E-18 105.3 10.0 76 7-94 28-103 (178)
20 COG0616 SppA Periplasmic serin 98.7 4E-08 8.7E-13 81.0 6.5 65 6-81 95-161 (317)
21 TIGR00706 SppA_dom signal pept 98.6 1.4E-07 3E-12 72.9 7.7 66 7-83 29-96 (207)
22 PF01972 SDH_sah: Serine dehyd 98.5 6.4E-07 1.4E-11 73.6 9.1 72 6-88 87-158 (285)
23 cd07023 S49_Sppa_N_C Signal pe 98.5 4.7E-07 1E-11 69.6 6.6 66 5-81 31-99 (208)
24 cd07014 S49_SppA Signal peptid 98.3 2.2E-06 4.7E-11 64.4 7.4 71 7-88 38-111 (177)
25 cd07022 S49_Sppa_36K_type Sign 98.3 3.1E-06 6.7E-11 65.6 7.6 64 7-81 41-106 (214)
26 TIGR00705 SppA_67K signal pept 98.3 9.2E-06 2E-10 72.0 10.8 63 8-81 346-411 (584)
27 cd07019 S49_SppA_1 Signal pept 98.2 7.7E-06 1.7E-10 63.4 7.6 64 8-82 38-104 (211)
28 PRK11778 putative inner membra 97.8 6.6E-05 1.4E-09 62.9 7.3 65 8-83 122-189 (330)
29 cd07018 S49_SppA_67K_type Sign 97.7 8.3E-05 1.8E-09 58.0 5.9 67 8-86 46-115 (222)
30 COG1030 NfeD Membrane-bound se 97.2 0.0021 4.5E-08 55.9 8.7 70 8-88 56-128 (436)
31 PRK10949 protease 4; Provision 97.2 0.0015 3.2E-08 58.7 7.5 63 7-80 363-428 (618)
32 COG3904 Predicted periplasmic 97.1 0.00059 1.3E-08 54.8 4.0 65 14-89 109-173 (245)
33 TIGR03134 malonate_gamma malon 95.6 0.068 1.5E-06 43.0 7.6 96 8-105 65-167 (238)
34 TIGR00513 accA acetyl-CoA carb 95.5 0.047 1E-06 45.8 6.7 74 9-87 151-228 (316)
35 PLN03230 acetyl-coenzyme A car 95.3 0.068 1.5E-06 46.6 7.0 73 9-87 221-298 (431)
36 cd06558 crotonase-like Crotona 95.0 0.24 5.1E-06 36.7 8.5 56 34-91 81-136 (195)
37 CHL00198 accA acetyl-CoA carbo 95.0 0.1 2.2E-06 43.9 7.0 73 9-87 154-231 (322)
38 PRK05724 acetyl-CoA carboxylas 95.0 0.11 2.4E-06 43.6 7.2 77 9-87 151-228 (319)
39 PLN03229 acetyl-coenzyme A car 94.9 0.11 2.3E-06 48.1 7.4 74 9-87 242-319 (762)
40 PRK12319 acetyl-CoA carboxylas 94.8 0.15 3.3E-06 41.3 7.6 71 9-87 98-175 (256)
41 PRK08258 enoyl-CoA hydratase; 92.3 0.55 1.2E-05 37.6 6.6 52 37-90 104-155 (277)
42 PRK03580 carnitinyl-CoA dehydr 92.3 0.45 9.7E-06 37.7 6.0 48 36-85 84-131 (261)
43 PRK06210 enoyl-CoA hydratase; 91.8 0.43 9.4E-06 37.9 5.5 49 38-88 100-148 (272)
44 PRK05981 enoyl-CoA hydratase; 91.8 0.46 9.9E-06 37.6 5.6 51 37-89 94-144 (266)
45 PRK07854 enoyl-CoA hydratase; 91.6 0.48 1E-05 37.3 5.4 45 37-83 77-121 (243)
46 PF00378 ECH: Enoyl-CoA hydrat 91.5 0.62 1.3E-05 36.2 5.9 51 35-87 79-129 (245)
47 COG1024 CaiD Enoyl-CoA hydrata 91.5 1.3 2.8E-05 34.9 7.8 54 37-92 89-142 (257)
48 PRK08150 enoyl-CoA hydratase; 91.4 0.55 1.2E-05 37.2 5.6 49 37-87 83-131 (255)
49 PRK06143 enoyl-CoA hydratase; 91.2 1.5 3.3E-05 34.7 7.9 49 37-87 91-139 (256)
50 PRK06072 enoyl-CoA hydratase; 91.1 0.66 1.4E-05 36.6 5.8 50 38-89 81-130 (248)
51 PRK07260 enoyl-CoA hydratase; 91.0 0.53 1.2E-05 37.1 5.2 45 37-83 89-133 (255)
52 PRK06213 enoyl-CoA hydratase; 90.9 0.79 1.7E-05 35.6 6.0 50 36-87 81-131 (229)
53 PRK07468 enoyl-CoA hydratase; 90.8 0.57 1.2E-05 37.2 5.2 48 38-87 92-139 (262)
54 PRK05869 enoyl-CoA hydratase; 90.8 0.66 1.4E-05 36.1 5.4 51 37-89 90-140 (222)
55 PLN02664 enoyl-CoA hydratase/d 90.6 0.51 1.1E-05 37.7 4.8 49 37-87 102-150 (275)
56 TIGR02280 PaaB1 phenylacetate 90.5 0.67 1.4E-05 36.6 5.3 48 38-87 85-132 (256)
57 PRK07511 enoyl-CoA hydratase; 90.4 1.2 2.6E-05 35.1 6.7 49 37-87 89-137 (260)
58 PRK09674 enoyl-CoA hydratase-i 90.4 0.9 2E-05 35.9 6.0 51 37-89 83-133 (255)
59 PRK06688 enoyl-CoA hydratase; 90.4 1.1 2.3E-05 35.3 6.4 51 36-88 86-136 (259)
60 PRK06127 enoyl-CoA hydratase; 90.3 0.84 1.8E-05 36.4 5.8 50 38-89 98-147 (269)
61 PRK05980 enoyl-CoA hydratase; 90.3 0.81 1.7E-05 36.1 5.6 47 37-85 91-137 (260)
62 PRK09245 enoyl-CoA hydratase; 90.1 0.94 2E-05 35.8 5.9 49 38-88 95-143 (266)
63 PRK08139 enoyl-CoA hydratase; 90.0 2.2 4.8E-05 34.0 8.0 51 37-89 95-145 (266)
64 TIGR03210 badI 2-ketocyclohexa 90.0 2.2 4.9E-05 33.7 7.9 51 37-89 85-135 (256)
65 PRK06495 enoyl-CoA hydratase; 89.9 0.73 1.6E-05 36.4 5.1 53 37-91 88-140 (257)
66 PRK06023 enoyl-CoA hydratase; 89.9 0.94 2E-05 35.7 5.7 49 37-87 88-136 (251)
67 PRK09120 p-hydroxycinnamoyl Co 89.8 0.75 1.6E-05 36.9 5.2 47 37-85 95-141 (275)
68 PRK08140 enoyl-CoA hydratase; 89.8 0.85 1.8E-05 36.0 5.4 48 38-87 91-138 (262)
69 PRK06142 enoyl-CoA hydratase; 89.8 0.9 2E-05 36.1 5.6 51 37-89 100-150 (272)
70 PRK07110 polyketide biosynthes 89.8 1.3 2.9E-05 34.9 6.4 49 37-87 85-133 (249)
71 PF01343 Peptidase_S49: Peptid 89.7 0.76 1.6E-05 33.8 4.7 42 42-85 2-43 (154)
72 PRK05870 enoyl-CoA hydratase; 89.7 1.2 2.7E-05 35.0 6.2 48 38-87 87-134 (249)
73 PRK07657 enoyl-CoA hydratase; 89.6 0.85 1.8E-05 36.1 5.3 49 37-87 88-136 (260)
74 PLN02820 3-methylcrotonyl-CoA 89.6 1.3 2.8E-05 39.9 6.9 79 9-87 401-482 (569)
75 PRK07509 enoyl-CoA hydratase; 89.5 1 2.2E-05 35.6 5.6 48 38-87 94-141 (262)
76 PRK05809 3-hydroxybutyryl-CoA 89.5 1.2 2.5E-05 35.2 6.0 49 37-87 88-136 (260)
77 PLN02888 enoyl-CoA hydratase 89.4 1.3 2.9E-05 35.3 6.3 48 37-86 90-137 (265)
78 PRK05995 enoyl-CoA hydratase; 89.4 2.6 5.6E-05 33.3 7.9 49 37-87 90-138 (262)
79 PLN02600 enoyl-CoA hydratase 89.3 0.94 2E-05 35.7 5.3 47 37-85 79-125 (251)
80 TIGR01929 menB naphthoate synt 89.2 1.2 2.5E-05 35.4 5.7 51 37-89 88-138 (259)
81 PRK09076 enoyl-CoA hydratase; 89.1 1 2.3E-05 35.6 5.5 49 37-87 86-134 (258)
82 PRK07659 enoyl-CoA hydratase; 89.1 0.91 2E-05 35.9 5.1 48 38-87 90-137 (260)
83 TIGR03189 dienoyl_CoA_hyt cycl 89.0 1 2.2E-05 35.6 5.3 49 37-87 80-128 (251)
84 PRK08260 enoyl-CoA hydratase; 88.9 1.3 2.7E-05 35.9 5.9 49 38-88 105-153 (296)
85 PRK07112 polyketide biosynthes 88.8 2.4 5.2E-05 33.5 7.3 49 37-87 87-135 (255)
86 PRK07658 enoyl-CoA hydratase; 88.5 1 2.2E-05 35.4 5.0 48 37-86 85-132 (257)
87 PRK06190 enoyl-CoA hydratase; 88.5 1.3 2.8E-05 35.3 5.6 48 37-86 85-132 (258)
88 TIGR01117 mmdA methylmalonyl-C 88.4 1.6 3.5E-05 38.6 6.7 79 9-87 350-431 (512)
89 PRK06144 enoyl-CoA hydratase; 88.3 1.2 2.6E-05 35.4 5.3 45 37-83 93-137 (262)
90 PRK07827 enoyl-CoA hydratase; 88.2 0.99 2.1E-05 35.7 4.7 47 37-85 92-138 (260)
91 PRK08138 enoyl-CoA hydratase; 88.1 1.3 2.9E-05 35.0 5.4 48 37-86 89-136 (261)
92 PF01039 Carboxyl_trans: Carbo 88.1 0.78 1.7E-05 40.1 4.4 79 9-87 329-410 (493)
93 PRK05864 enoyl-CoA hydratase; 88.0 1.2 2.6E-05 35.6 5.2 45 37-83 100-144 (276)
94 PRK11423 methylmalonyl-CoA dec 88.0 1.3 2.8E-05 35.2 5.3 48 37-86 87-134 (261)
95 PRK07938 enoyl-CoA hydratase; 87.9 1.4 3E-05 34.8 5.4 49 37-87 85-133 (249)
96 PRK05862 enoyl-CoA hydratase; 87.9 1.3 2.8E-05 35.0 5.2 48 37-86 85-132 (257)
97 PRK08290 enoyl-CoA hydratase; 87.7 1.4 3.1E-05 35.6 5.5 48 38-87 110-157 (288)
98 PLN03214 probable enoyl-CoA hy 87.6 1.2 2.6E-05 35.9 5.0 48 38-87 99-146 (278)
99 TIGR00705 SppA_67K signal pept 87.5 2 4.3E-05 38.5 6.7 67 7-85 92-162 (584)
100 PRK06563 enoyl-CoA hydratase; 87.4 1.6 3.5E-05 34.4 5.5 47 41-89 87-133 (255)
101 PRK05617 3-hydroxyisobutyryl-C 87.3 1.2 2.6E-05 37.1 4.9 48 37-86 91-138 (342)
102 PRK07396 dihydroxynaphthoic ac 87.1 2.3 4.9E-05 34.0 6.3 49 38-88 99-147 (273)
103 PRK05674 gamma-carboxygeranoyl 87.0 1.3 2.8E-05 35.3 4.8 47 37-85 92-138 (265)
104 COG0825 AccA Acetyl-CoA carbox 86.6 0.7 1.5E-05 38.8 3.1 73 9-87 150-227 (317)
105 PLN02921 naphthoate synthase 86.5 2.1 4.5E-05 35.6 5.9 51 38-90 153-203 (327)
106 PRK07327 enoyl-CoA hydratase; 86.0 1.7 3.6E-05 34.7 4.9 44 38-83 98-141 (268)
107 PRK08272 enoyl-CoA hydratase; 85.9 2.4 5.1E-05 34.4 5.9 45 37-83 118-162 (302)
108 PRK06494 enoyl-CoA hydratase; 85.5 3.8 8.2E-05 32.4 6.7 46 42-89 90-135 (259)
109 PLN02874 3-hydroxyisobutyryl-C 85.1 2.6 5.6E-05 35.7 5.9 48 39-88 98-145 (379)
110 PRK08788 enoyl-CoA hydratase; 85.1 2.8 6.1E-05 34.2 5.9 40 44-85 119-158 (287)
111 TIGR03200 dearomat_oah 6-oxocy 84.7 4 8.7E-05 34.9 6.9 51 37-89 115-165 (360)
112 PLN02988 3-hydroxyisobutyryl-C 84.6 2.5 5.4E-05 36.0 5.6 44 40-85 99-142 (381)
113 PRK12478 enoyl-CoA hydratase; 84.4 2.6 5.6E-05 34.4 5.4 48 38-87 104-151 (298)
114 PLN02851 3-hydroxyisobutyryl-C 82.5 3.3 7.2E-05 35.7 5.6 46 41-88 133-178 (407)
115 PRK08321 naphthoate synthase; 81.6 3.7 8E-05 33.4 5.3 48 38-87 127-175 (302)
116 PLN02157 3-hydroxyisobutyryl-C 81.2 4.6 0.0001 34.7 6.0 47 39-87 126-172 (401)
117 PRK10949 protease 4; Provision 81.1 3.5 7.6E-05 37.4 5.4 69 7-87 111-183 (618)
118 PRK07799 enoyl-CoA hydratase; 80.9 2.7 5.9E-05 33.2 4.2 44 42-87 96-139 (263)
119 PRK07189 malonate decarboxylas 80.9 6.1 0.00013 33.0 6.4 67 10-87 109-186 (301)
120 TIGR03133 malonate_beta malona 80.8 7.3 0.00016 32.1 6.8 66 10-86 100-176 (274)
121 PLN02267 enoyl-CoA hydratase/i 77.8 5.3 0.00011 31.4 4.9 48 38-87 86-134 (239)
122 PRK08252 enoyl-CoA hydratase; 76.6 4.9 0.00011 31.6 4.5 40 44-85 89-128 (254)
123 TIGR02437 FadB fatty oxidation 75.4 8.5 0.00018 35.3 6.2 51 35-87 91-141 (714)
124 TIGR02440 FadJ fatty oxidation 75.3 8.5 0.00018 35.1 6.1 49 36-86 86-134 (699)
125 PRK08259 enoyl-CoA hydratase; 74.8 5.4 0.00012 31.5 4.3 40 44-85 91-130 (254)
126 PRK11730 fadB multifunctional 73.9 9.1 0.0002 35.0 6.0 48 38-87 94-141 (715)
127 TIGR03222 benzo_boxC benzoyl-C 72.2 14 0.00029 33.2 6.6 40 38-79 111-150 (546)
128 PRK11154 fadJ multifunctional 70.3 12 0.00026 34.2 6.0 48 37-86 92-141 (708)
129 KOG1680 Enoyl-CoA hydratase [L 69.2 5.8 0.00013 33.1 3.3 52 36-89 117-168 (290)
130 PF06833 MdcE: Malonate decarb 68.4 21 0.00046 28.9 6.4 71 6-85 61-141 (234)
131 PRK08184 benzoyl-CoA-dihydrodi 68.2 12 0.00027 33.5 5.4 44 38-83 115-160 (550)
132 TIGR00515 accD acetyl-CoA carb 66.5 27 0.00059 28.8 6.8 67 9-86 155-232 (285)
133 TIGR02441 fa_ox_alpha_mit fatt 65.4 19 0.0004 33.3 6.2 43 36-80 98-140 (737)
134 PRK05654 acetyl-CoA carboxylas 64.1 41 0.00089 27.8 7.4 69 9-87 156-234 (292)
135 TIGR03222 benzo_boxC benzoyl-C 61.4 18 0.00039 32.5 5.2 50 38-89 357-415 (546)
136 PRK08184 benzoyl-CoA-dihydrodi 55.9 20 0.00043 32.2 4.5 50 38-89 361-419 (550)
137 PF04110 APG12: Ubiquitin-like 44.3 26 0.00056 24.2 2.7 42 8-59 43-87 (87)
138 PRK14500 putative bifunctional 39.6 15 0.00033 30.8 1.2 47 33-80 123-180 (346)
139 PF14048 MBD_C: C-terminal dom 38.9 38 0.00081 23.7 2.9 47 66-112 46-92 (96)
140 COG4799 Acetyl-CoA carboxylase 37.1 31 0.00067 31.1 2.7 75 9-83 359-436 (526)
141 TIGR01117 mmdA methylmalonyl-C 36.9 1.2E+02 0.0027 26.9 6.4 68 9-87 117-194 (512)
142 KOG1682 Enoyl-CoA isomerase [L 36.2 20 0.00043 29.4 1.2 42 38-81 117-158 (287)
143 PF01039 Carboxyl_trans: Carbo 34.4 1.1E+02 0.0024 26.7 5.7 67 9-86 92-170 (493)
144 TIGR00661 MJ1255 conserved hyp 34.0 87 0.0019 25.0 4.7 45 12-68 2-46 (321)
145 TIGR00215 lpxB lipid-A-disacch 32.3 72 0.0015 26.6 4.0 35 13-55 7-41 (385)
146 PLN02820 3-methylcrotonyl-CoA 32.2 2.1E+02 0.0045 26.0 7.1 76 9-86 164-244 (569)
147 PF13510 Fer2_4: 2Fe-2S iron-s 30.4 14 0.0003 24.5 -0.4 36 10-54 2-37 (82)
148 PF13528 Glyco_trans_1_3: Glyc 29.1 1.2E+02 0.0026 23.6 4.6 37 11-57 2-38 (318)
149 PRK12446 undecaprenyldiphospho 26.8 99 0.0021 25.5 4.0 33 14-53 4-36 (352)
150 PRK00025 lpxB lipid-A-disaccha 26.1 1.2E+02 0.0025 24.4 4.2 36 13-56 3-38 (380)
151 PF03028 Dynein_heavy: Dynein 25.1 69 0.0015 29.0 2.9 65 6-82 113-182 (707)
152 PTZ00311 phosphoenolpyruvate c 25.0 72 0.0016 29.1 3.0 48 32-85 434-481 (561)
153 CHL00174 accD acetyl-CoA carbo 24.8 3.1E+02 0.0068 22.9 6.5 68 9-87 168-247 (296)
154 PRK05371 x-prolyl-dipeptidyl a 23.2 2.8E+02 0.006 25.9 6.5 69 11-79 280-370 (767)
155 PF12854 PPR_1: PPR repeat 22.2 58 0.0012 17.8 1.2 14 30-43 21-34 (34)
156 PF09960 DUF2194: Uncharacteri 22.1 1.2E+02 0.0025 27.7 3.7 44 79-122 342-399 (585)
157 cd01472 vWA_collagen von Wille 22.0 2.9E+02 0.0064 19.4 6.6 40 37-77 121-160 (164)
158 KOG1552 Predicted alpha/beta h 21.7 2.5E+02 0.0055 23.1 5.3 53 30-88 110-163 (258)
159 PF13812 PPR_3: Pentatricopept 21.2 1E+02 0.0023 15.6 2.1 17 30-46 15-31 (34)
160 cd01452 VWA_26S_proteasome_sub 20.2 2.8E+02 0.0061 21.3 5.1 41 9-57 107-147 (187)
No 1
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=5.9e-42 Score=267.14 Aligned_cols=110 Identities=31% Similarity=0.458 Sum_probs=105.7
Q ss_pred CcccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcE
Q 033232 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 1 l~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~ 80 (124)
|||+++++.++|+||||||| |+|++|+||||+|++++++|+|+|+|+|||||++|++||+||||+++|||+
T Consensus 49 l~Lea~~~~k~I~lyINSpG---------G~V~aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsr 119 (200)
T COG0740 49 LFLEAEDPDKDIYLYINSPG---------GSVTAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNAR 119 (200)
T ss_pred HHHHhcCCCCCeEEEEeCCC---------cccchhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCce
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCcCHHHHHHHHHHHHHHHhHcccccchhhcc
Q 033232 81 TKLYLPVVGRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYI 122 (124)
Q Consensus 81 iMiHqp~~~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~ 122 (124)
+|||||+ |+.+|+++|++++|+|+++++..| ++.+++-|
T Consensus 120 imIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l--~~i~a~~T 158 (200)
T COG0740 120 IMIHQPS-GGAQGQASDIEIHAREILKIKERL--NRIYAEHT 158 (200)
T ss_pred EEEecCC-ccCccCHHHHHHHHHHHHHHHHHH--HHHHHHHc
Confidence 9999999 999999999999999999999999 77776654
No 2
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-42 Score=276.29 Aligned_cols=111 Identities=38% Similarity=0.579 Sum_probs=106.6
Q ss_pred CcccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcE
Q 033232 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 1 l~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~ 80 (124)
||||++|+++||++|||||| |++++|+||||+|++++++|.|+|+|+|+|||+|||++|+||+|+++||++
T Consensus 114 L~Ld~ed~~K~I~lyINSPG---------G~vtaglAIYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsr 184 (275)
T KOG0840|consen 114 LYLDSEDPKKPIYLYINSPG---------GSVTAGLAIYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSR 184 (275)
T ss_pred HHhhccCCCCCeEEEEeCCC---------CccchhhhHHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCce
Confidence 69999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCcCHHHHHHHHHHHHHHHhHcccccchhhccc
Q 033232 81 TKLYLPVVGRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYIS 123 (124)
Q Consensus 81 iMiHqp~~~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~~ 123 (124)
+|||||. ++++|++.|+.++|+|+.++++.+ +..|+.+|.
T Consensus 185 iMIhQP~-gga~Gqa~Di~i~akE~~~~k~~l--~~i~a~~Tg 224 (275)
T KOG0840|consen 185 IMIHQPS-GGAGGQATDIVIQAKELMRIKEYL--NEIYAKHTG 224 (275)
T ss_pred eEEeccC-CCcCccchHHHHHHHHHHHHHHHH--HHHHHHhcC
Confidence 9999999 889999999999999999999998 777776653
No 3
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=3.2e-41 Score=266.52 Aligned_cols=120 Identities=37% Similarity=0.561 Sum_probs=114.7
Q ss_pred CcccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcE
Q 033232 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 1 l~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~ 80 (124)
|||+++++++||++||||||++..+|+++|++++|++|||+|++++++|+|+|+|+|+|+|++||++|+||+|+++|||+
T Consensus 62 l~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~ 141 (222)
T PRK12552 62 LYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHAT 141 (222)
T ss_pred HHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCcCHHHHHHHHHHHHHHHhHcccccchhhccc
Q 033232 81 TKLYLPVVGRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYIS 123 (124)
Q Consensus 81 iMiHqp~~~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~~ 123 (124)
+|||||+ ++.+|+++|++++|+|++++++.+ .+.+++.|.
T Consensus 142 iMIHqP~-~~~~G~A~di~~~a~el~~~r~~l--~~iya~~TG 181 (222)
T PRK12552 142 IVLHQPR-SGARGQATDIQIRAKEVLHNKRTM--LEILSRNTG 181 (222)
T ss_pred EEeccCC-cccccCHHHHHHHHHHHHHHHHHH--HHHHHHHHC
Confidence 9999999 789999999999999999999998 667777654
No 4
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1e-38 Score=248.75 Aligned_cols=110 Identities=29% Similarity=0.377 Sum_probs=104.2
Q ss_pred CcccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcE
Q 033232 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 1 l~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~ 80 (124)
|||+++++++||+||||||| |+|++|++|||+|++++++|+|+|+|+|+|||++||+||+|++|+++|||+
T Consensus 49 l~L~~~~~~~~I~l~INSpG---------G~v~~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~ 119 (201)
T PRK14513 49 LLLDSQNPEQEIQMYINCPG---------GEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSR 119 (201)
T ss_pred HHhhccCCCCCEEEEEECCC---------CchhhHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeE
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCcCHHHHHHHHHHHHHHHhHcccccchhhcc
Q 033232 81 TKLYLPVVGRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYI 122 (124)
Q Consensus 81 iMiHqp~~~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~ 122 (124)
+|||||+ ++..|++.|++++|+|++++++.+ .+.++..|
T Consensus 120 iMIHqp~-~~~~G~a~di~~~a~el~~~~~~l--~~iya~~T 158 (201)
T PRK14513 120 IMIHQGS-AGFRGNTPDLEVQAKEVLFLRDTL--VDIYHRHT 158 (201)
T ss_pred EEEecCC-CCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 9999999 788999999999999999999887 66666554
No 5
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=250.68 Aligned_cols=110 Identities=31% Similarity=0.402 Sum_probs=104.6
Q ss_pred CcccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcE
Q 033232 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 1 l~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~ 80 (124)
|||+++++++||++|||||| |+|++|++|||+|++++++|+|+|+|+|||||++||++|+|++|+++|||+
T Consensus 76 l~L~~~~~~~~I~lyINSpG---------Gsv~aGlaIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~ 146 (221)
T PRK14514 76 LYLDSVDPGKDISIYINSPG---------GSVYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSR 146 (221)
T ss_pred HHHhccCCCCCEEEEEECCC---------cchhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCE
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCcCHHHHHHHHHHHHHHHhHcccccchhhcc
Q 033232 81 TKLYLPVVGRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYI 122 (124)
Q Consensus 81 iMiHqp~~~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~ 122 (124)
+|||||+ ++..|+++|++++++|++++++.+ .+.++..|
T Consensus 147 iMiHqP~-~~~~G~a~di~i~a~el~~~~~~i--~~iya~~T 185 (221)
T PRK14514 147 VMIHQPL-GGAQGQASDIEITAREIQKLKKEL--YTIIADHS 185 (221)
T ss_pred EEeccCC-cccCCCcchHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 9999999 789999999999999999999998 56666554
No 6
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=8.4e-38 Score=242.56 Aligned_cols=110 Identities=34% Similarity=0.481 Sum_probs=103.9
Q ss_pred CcccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcE
Q 033232 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 1 l~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~ 80 (124)
+||+++++.+||+||||||| |+|++|++|||+|++++++|+|+|+|+|+|+|++||++|+|++|+++|||+
T Consensus 47 l~l~~~~~~~~I~l~INSpG---------G~v~~g~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~ 117 (196)
T PRK12551 47 LFLEAEDPEKDIYLYINSPG---------GSVYDGLGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSR 117 (196)
T ss_pred HHhhccCCCCCEEEEEeCCC---------cchhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCE
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCcCHHHHHHHHHHHHHHHhHcccccchhhcc
Q 033232 81 TKLYLPVVGRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYI 122 (124)
Q Consensus 81 iMiHqp~~~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~ 122 (124)
+|||||+ ++..|+++|++++++|++++++.+ ...+++.|
T Consensus 118 iMIHqP~-~~~~G~a~di~~~a~~l~~~~~~~--~~~ya~~t 156 (196)
T PRK12551 118 IMIHQPL-GGARGQASDIRIQADEILFLKERL--NTELSERT 156 (196)
T ss_pred EEEecCC-cccCCCcchHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 9999999 789999999999999999999987 55565544
No 7
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=2e-37 Score=241.01 Aligned_cols=111 Identities=23% Similarity=0.393 Sum_probs=104.7
Q ss_pred CcccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcE
Q 033232 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 1 l~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~ 80 (124)
|||+++++.++|+||||||| |++++|++|||+|++++++|+|+|+|+|+|+|++||++|+||+|+++|||+
T Consensus 52 l~L~~~~~~~~I~l~INSpG---------G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~ 122 (200)
T CHL00028 52 VYLSIEDDTKDLYLFINSPG---------GSVISGLAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHAR 122 (200)
T ss_pred HHHhccCCCCCEEEEEeCCC---------cchhhHHHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCe
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCC-CCcCHHHHHHHHHHHHHHHhHcccccchhhccc
Q 033232 81 TKLYLPVVGR-SSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYIS 123 (124)
Q Consensus 81 iMiHqp~~~~-~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~~ 123 (124)
+|||||+ ++ ..|+++|++++++|++++++.+ .+.++..|.
T Consensus 123 imiHqp~-~~~~~G~a~di~~~a~~l~~~~~~~--~~~ya~~Tg 163 (200)
T CHL00028 123 VMIHQPA-SSFYEGQASEFVLEAEELLKLRETI--TRVYAQRTG 163 (200)
T ss_pred EEEecCc-cCcCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHC
Confidence 9999999 66 8999999999999999999987 666666553
No 8
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=2.7e-34 Score=222.54 Aligned_cols=110 Identities=26% Similarity=0.358 Sum_probs=102.6
Q ss_pred CcccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcE
Q 033232 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 1 l~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~ 80 (124)
+||+.+++.++|+||||||| |+|++|++|||+|+++++||+|+|.|+|+|+|++|+++|++++|+++||++
T Consensus 45 ~~l~~~~~~~~I~l~INSpG---------G~v~ag~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~ 115 (197)
T PRK14512 45 LLLEALDSKKPIFVYIDSEG---------GDIDAGFAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNAR 115 (197)
T ss_pred HHHHhcCCCCCEEEEEECCC---------CCHHHHHHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCc
Confidence 36788788899999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCcCHHHHHHHHHHHHHHHhHcccccchhhcc
Q 033232 81 TKLYLPVVGRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYI 122 (124)
Q Consensus 81 iMiHqp~~~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~ 122 (124)
+|||||+ ++..|+++|+++++++++++++.+ .+.+++.|
T Consensus 116 imiHqP~-~~~~G~a~di~~~a~~l~~~~~~i--~~~~a~~t 154 (197)
T PRK14512 116 YLLHQPL-SGFKGVATDIEIYANELNKVKSEL--NDIIAKET 154 (197)
T ss_pred EEEEcCc-cccccCHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 9999999 788999999999999999999887 66666554
No 9
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=9.3e-34 Score=218.18 Aligned_cols=110 Identities=35% Similarity=0.503 Sum_probs=102.9
Q ss_pred CcccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcE
Q 033232 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 1 l~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~ 80 (124)
+||+.+++.++|+||||||| |++++|++|||+|++++++|+|+|+|+|+|+|++|+++|++++|+++|||+
T Consensus 48 ~~l~~~~~~~~i~l~InSpG---------G~v~~g~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~ 118 (191)
T TIGR00493 48 LFLEAEDPEKDIYLYINSPG---------GSITAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSR 118 (191)
T ss_pred HHhhccCCCCCEEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCce
Confidence 47888898999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCcCHHHHHHHHHHHHHHHhHcccccchhhcc
Q 033232 81 TKLYLPVVGRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYI 122 (124)
Q Consensus 81 iMiHqp~~~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~ 122 (124)
+|||||+ ++..|++.|+++++++++++++.+ .+.+++.+
T Consensus 119 imiH~p~-~~~~G~a~d~~~~a~~l~~~~~~~--~~~ya~~t 157 (191)
T TIGR00493 119 IMIHQPL-GGAQGQASDIEIQANEILRLKGLL--NDILANHT 157 (191)
T ss_pred EEEecCc-ccccCCcchhHHHHHHHHHHHHHH--HHHHHHHH
Confidence 9999999 678999999999999999999988 55555544
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.97 E-value=1.2e-31 Score=207.53 Aligned_cols=110 Identities=35% Similarity=0.478 Sum_probs=103.3
Q ss_pred CcccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcE
Q 033232 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 1 l~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~ 80 (124)
+||+.+++.++|+||||||| |++++|++|||+|++++++|+|+|.|.|+|+|++|+++|++++|+++||++
T Consensus 53 ~~l~~~~~~~~I~l~InSpG---------G~v~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~ 123 (200)
T PRK00277 53 LFLEAEDPDKDIYLYINSPG---------GSVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSR 123 (200)
T ss_pred HHhhccCCCCCEEEEEECCC---------CcHHHHHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCce
Confidence 47888888999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCcCHHHHHHHHHHHHHHHhHcccccchhhcc
Q 033232 81 TKLYLPVVGRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYI 122 (124)
Q Consensus 81 iMiHqp~~~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~ 122 (124)
+|||||+ ++..|++.|++++++|+.++++.+ .+.+++.|
T Consensus 124 imih~p~-~~~~G~a~di~~~a~~l~~~~~~~--~~~~a~~t 162 (200)
T PRK00277 124 IMIHQPL-GGFQGQATDIEIHAREILKLKKRL--NEILAEHT 162 (200)
T ss_pred EEeccCc-ccccCChhHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 9999999 789999999999999999999987 56666554
No 11
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.97 E-value=3e-31 Score=206.39 Aligned_cols=110 Identities=28% Similarity=0.363 Sum_probs=100.8
Q ss_pred cccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEE
Q 033232 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (124)
Q Consensus 2 ~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~i 81 (124)
||+.+++.++|+||||||| |++++|++|||+|++++++|+|+|.|.|+|+|++|+++|++++|++.|||++
T Consensus 58 ~l~~~~~~~~I~l~INSpG---------G~v~~g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~i 128 (207)
T PRK12553 58 VLESIDPDRDITLYINSPG---------GSVTAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARI 128 (207)
T ss_pred HHHhCCCCCCEEEEEeCCC---------CcHHHHHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchh
Confidence 6777888899999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCC-CCCCcCHHHHHHHHHHHHHHHhHcccccchhhcc
Q 033232 82 KLYLPVV-GRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYI 122 (124)
Q Consensus 82 MiHqp~~-~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~ 122 (124)
|||||+. ++..|++.|++++++|++++++.+ .+.+++.+
T Consensus 129 miH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~--~~~ya~~t 168 (207)
T PRK12553 129 LIHQPSLGGGIRGQASDLEIQAREILRMRERL--ERILAEHT 168 (207)
T ss_pred hhcCccccCCCccCHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 9999985 357899999999999999999987 45555443
No 12
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.97 E-value=8.1e-31 Score=196.64 Aligned_cols=110 Identities=32% Similarity=0.411 Sum_probs=103.1
Q ss_pred cccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEE
Q 033232 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (124)
Q Consensus 2 ~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~i 81 (124)
+|+.+++.++|+||||||| |++++|++|||+|+.++.+|+|++.|+|+|+|++|+++|+||+|+++||+++
T Consensus 23 ~l~~~~~~~~i~l~InSpG---------G~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~ 93 (162)
T cd07013 23 FLGAVNPEKDIYLYINSPG---------GDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMM 93 (162)
T ss_pred HHhcCCCCCCEEEEEECCC---------CcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecCEEE
Confidence 5777888899999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCcCHHHHHHHHHHHHHHHhHcccccchhhccc
Q 033232 82 KLYLPVVGRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYIS 123 (124)
Q Consensus 82 MiHqp~~~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~~ 123 (124)
|||||+ ++..|++.|+++.+++++++++.+ .+.+++.+.
T Consensus 94 ~ih~~~-~~~~g~~~d~~~~~~~l~~~~~~~--~~~~a~~tg 132 (162)
T cd07013 94 MIHQPW-GGTLGDATDMRIYADLLLKVEGNL--VSAYAHKTG 132 (162)
T ss_pred EEccCc-ccccCCHHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 999999 789999999999999999999998 567766553
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=99.96 E-value=6.3e-30 Score=192.65 Aligned_cols=110 Identities=35% Similarity=0.522 Sum_probs=101.5
Q ss_pred cccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEE
Q 033232 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (124)
Q Consensus 2 ~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~i 81 (124)
+++.+++.++|+||||||| |++++|++|||.|++++.+|+|++.|+|+|+|++|+++|+||+|++.||+++
T Consensus 32 ~~~~~~~~~~i~l~inSpG---------G~v~~~~~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~ 102 (171)
T cd07017 32 YLESEDPKKPIYLYINSPG---------GSVTAGLAIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRI 102 (171)
T ss_pred HHHccCCCCceEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHH
Confidence 5667777799999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCcCHHHHHHHHHHHHHHHhHcccccchhhccc
Q 033232 82 KLYLPVVGRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYIS 123 (124)
Q Consensus 82 MiHqp~~~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~~ 123 (124)
|+|+|+ ++..|+++|++.+++++.++++.+ .+.+++.+.
T Consensus 103 ~~h~~~-~~~~g~~~~~~~~~~~l~~~~~~~--~~~~~~~tg 141 (171)
T cd07017 103 MIHQPL-GGAGGQASDIEIQAKEILRLRRRL--NEILAKHTG 141 (171)
T ss_pred HHcCCC-ccCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 999999 789999999999999999999887 566665543
No 14
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=99.96 E-value=3.2e-30 Score=194.19 Aligned_cols=109 Identities=29% Similarity=0.404 Sum_probs=98.9
Q ss_pred cccCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEE
Q 033232 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (124)
Q Consensus 2 ~L~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~i 81 (124)
||+.+++.++|+|+||||| |++++|++|||+|+.++.+|+|+|.|.|+|+|++|+++|++++|++.|+|++
T Consensus 39 ~l~~~~~~~~i~i~INSpG---------G~v~~g~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~ 109 (182)
T PF00574_consen 39 YLENEDKNKPINIYINSPG---------GDVDAGLAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRF 109 (182)
T ss_dssp HHHHHTSSSEEEEEEEECE---------BCHHHHHHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EE
T ss_pred HHhccCCCceEEEEEcCCC---------CccHHHHHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEE
Confidence 5777888899999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCcCHHHHHHHHHHHHHHHhHcccccchhhcc
Q 033232 82 KLYLPVVGRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYI 122 (124)
Q Consensus 82 MiHqp~~~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~ 122 (124)
|+|||+ .+..|++.|++++++++.++++.+ .+.++..|
T Consensus 110 m~H~p~-~~~~g~~~~l~~~~~~l~~~~~~~--~~~~~~~t 147 (182)
T PF00574_consen 110 MIHQPS-TGSGGNASELREQAKELEKLNERI--ANIYAERT 147 (182)
T ss_dssp EES-CE-EEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred Eeecce-eecccccchhHHHHHHHHHHHHHH--HHHHHHHh
Confidence 999999 788899999999999999999887 66666544
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.88 E-value=4.9e-22 Score=146.93 Aligned_cols=104 Identities=20% Similarity=0.193 Sum_probs=93.2
Q ss_pred CCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEe
Q 033232 5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (124)
Q Consensus 5 ~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiH 84 (124)
....+++|.|+||||| |++++|++|+|.|+.++.||.|++.|.|+|+|++|+++|+ +|++.|+++||+|
T Consensus 26 ~~~~~~~i~l~inspG---------G~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d--~~~~~~~a~~~~~ 94 (160)
T cd07016 26 ALGDDSDITVRINSPG---------GDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGD--EVEMPPNAMLMIH 94 (160)
T ss_pred hccCCCCEEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHhcCC--eEEECCCcEEEEE
Confidence 3334489999999999 9999999999999999999999999999999999999995 7999999999999
Q ss_pred cCCCCCCCcCHHHHHHHHHHHHHHHhHcccccchhhcc
Q 033232 85 LPVVGRSSGPVTDMWRKVFPTFLLLSFLYYPQSFSHYI 122 (124)
Q Consensus 85 qp~~~~~~G~a~di~~~a~el~~~~~~l~~~~~~~~~~ 122 (124)
+|+ ++..|+..++++..++++++++.+ .+.++..+
T Consensus 95 ~~~-~~~~g~~~~~~~~~~~l~~~~~~~--~~~~~~~~ 129 (160)
T cd07016 95 NPS-TGAAGNADDLRKAADLLDKIDESI--ANAYAEKT 129 (160)
T ss_pred CCc-cccCcCHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 999 788899999999999999998887 55555443
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.80 E-value=4.2e-19 Score=135.61 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEc---ceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 7 ~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~---G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
++.++|.|+||||| |.++++++|||+|+..+.||.|+|. |+|+|+|++|+++|+ +|+|.|+++++.
T Consensus 28 ~~~~~i~l~inSPG---------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~--~i~m~p~s~iG~ 96 (172)
T cd07015 28 DNAEAIIIELDTPG---------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSH--LIAMAPGTSIGA 96 (172)
T ss_pred CCCCeEEEEEECCC---------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcC--ceEECCCCEEEE
Confidence 55789999999999 9999999999999999999999999 999999999999996 599999999999
Q ss_pred ecCCCCCCCcC-----HHHHHHHHHHHHHHHhH
Q 033232 84 YLPVVGRSSGP-----VTDMWRKVFPTFLLLSF 111 (124)
Q Consensus 84 Hqp~~~~~~G~-----a~di~~~a~el~~~~~~ 111 (124)
|+|. .+ .|+ +.|..++.+++.++|+.
T Consensus 97 ~~pi-~~-~g~~~~~~~~~~ki~~~~~~~~r~~ 127 (172)
T cd07015 97 CRPI-LG-YSQNGSIIEAPPKITNYFIAYIKSL 127 (172)
T ss_pred cccc-cc-CCCCCccccchHHHHHHHHHHHHHH
Confidence 9997 44 366 77888888888888873
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.64 E-value=1.2e-15 Score=112.07 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=81.2
Q ss_pred cCCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 4 DFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 4 ~~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
+..++.+.|.|++|||| |++..+..|+++|+.++.||.+++.|.|+|+|.+|+++|+ +|++.|++++++
T Consensus 24 ~~d~~~~~ivl~~~s~G---------g~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d--~~~~~~~a~~~~ 92 (161)
T cd00394 24 EADNSVKAIVLEVNTPG---------GRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN--KIVMAPGTRVGS 92 (161)
T ss_pred HhCCCCceEEEEEECCC---------cCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC--EEEECCCCEEEE
Confidence 34455789999999999 9999999999999999999999999999999999999995 799999999999
Q ss_pred ecCCCCCCCcCH--HHHHHHHHHHHHHHhHc
Q 033232 84 YLPVVGRSSGPV--TDMWRKVFPTFLLLSFL 112 (124)
Q Consensus 84 Hqp~~~~~~G~a--~di~~~a~el~~~~~~l 112 (124)
|+|+ ....+.. .+.+...+.+..+.+.+
T Consensus 93 ~g~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 122 (161)
T cd00394 93 HGPI-GGYGGNGNPTAQEADQRIILYFIARF 122 (161)
T ss_pred eeeE-EecCCCCChHHHHHHHHHHHHHHHHH
Confidence 9998 4555543 66665555555554443
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.60 E-value=8.7e-15 Score=111.51 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=66.3
Q ss_pred CCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEc---ceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 7 ~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~---G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
++.+.|.|+||||| |+++++..|++.|+.++.||.+.+. |.|+|+|++|+++| ++|++.|+++|++
T Consensus 28 ~~~~~vvl~InSpG---------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~--D~iva~p~a~~g~ 96 (187)
T cd07020 28 GGADALIIELDTPG---------GLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILLAA--HIAAMAPGTNIGA 96 (187)
T ss_pred CCCCEEEEEEECCC---------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhC--CceeECCCCcEEe
Confidence 34688999999999 9999999999999999999999998 99999999999999 5699999999999
Q ss_pred ecCC
Q 033232 84 YLPV 87 (124)
Q Consensus 84 Hqp~ 87 (124)
|+|.
T Consensus 97 ~~~~ 100 (187)
T cd07020 97 AHPV 100 (187)
T ss_pred cccc
Confidence 9998
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.51 E-value=1.4e-13 Score=105.32 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=69.7
Q ss_pred CCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecC
Q 033232 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLP 86 (124)
Q Consensus 7 ~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp 86 (124)
++.+.|.|+||||| |.++++..|++.|+..+.||.+++.|.|+|+|++|++++ ++++|.|++.++.|.|
T Consensus 28 ~~~~~ivl~inspG---------G~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~--d~i~m~p~a~iG~~~~ 96 (178)
T cd07021 28 EGADAVVLDIDTPG---------GRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAA--DEIYMAPGATIGAAEP 96 (178)
T ss_pred CCCCeEEEEEECcC---------CCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhC--CeEEECCCCeEecCee
Confidence 34689999999999 999999999999999999999999999999999999999 5799999999999999
Q ss_pred CCCCCCcC
Q 033232 87 VVGRSSGP 94 (124)
Q Consensus 87 ~~~~~~G~ 94 (124)
. ....++
T Consensus 97 v-~~~~~~ 103 (178)
T cd07021 97 I-PGDGNG 103 (178)
T ss_pred E-cCCCcc
Confidence 8 454443
No 20
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.68 E-value=4e-08 Score=80.98 Aligned_cols=65 Identities=26% Similarity=0.242 Sum_probs=59.6
Q ss_pred CCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCC--CeEEEEcceeccHHHHHHhcCCCCceeeccCcEE
Q 033232 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKS--KVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (124)
Q Consensus 6 ~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~--~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~i 81 (124)
.++.++|-|.||||| |++.++.-|++.++.++. ||++.+-++|||.|-+|.+++ ++.+|.|++.+
T Consensus 95 ~~~vk~vvL~inSPG---------G~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aA--d~I~a~p~si~ 161 (317)
T COG0616 95 DPSVKAVVLRINSPG---------GSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAA--DKIVADPSSIT 161 (317)
T ss_pred CCCCceEEEEEECcC---------CchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccC--CEEEecCCcee
Confidence 456789999999999 999999999999998887 599999999999999999999 57899999864
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=98.63 E-value=1.4e-07 Score=72.92 Aligned_cols=66 Identities=21% Similarity=0.190 Sum_probs=60.0
Q ss_pred CCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcC--CCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK--SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 7 ~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~--~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
+..+.|.|++|||| |++..+..|+++|+.++ .||.+++.|.|+|.|..|++++ ++|++.|++.+..
T Consensus 29 ~~i~~vvl~~~s~G---------g~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aa--D~i~a~p~a~vg~ 96 (207)
T TIGR00706 29 KSIKALLLRINSPG---------GTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAA--DEIVANPGTITGS 96 (207)
T ss_pred CCccEEEEEecCCC---------CCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcC--CEEEECCCCeEEe
Confidence 34578999999999 99999999999999998 8999999999999999999999 5799999997543
No 22
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.52 E-value=6.4e-07 Score=73.59 Aligned_cols=72 Identities=22% Similarity=0.217 Sum_probs=66.0
Q ss_pred CCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEec
Q 033232 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 6 ~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHq 85 (124)
..++++|.+.|+||| |.+.++..|.+.++..+.+++.++-..|.|+|++|..++ ++-+|.|+|.+-==.
T Consensus 87 ~~~~~~IdLii~TpG---------G~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaA--DeIvM~p~a~LGpiD 155 (285)
T PF01972_consen 87 APKDKPIDLIIHTPG---------GLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAA--DEIVMGPGAVLGPID 155 (285)
T ss_pred cCCCCceEEEEECCC---------CcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhC--CeEEECCCCccCCCC
Confidence 345679999999999 999999999999999999999999999999999999999 467999999998777
Q ss_pred CCC
Q 033232 86 PVV 88 (124)
Q Consensus 86 p~~ 88 (124)
|..
T Consensus 156 Pqi 158 (285)
T PF01972_consen 156 PQI 158 (285)
T ss_pred ccc
Confidence 774
No 23
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=98.46 E-value=4.7e-07 Score=69.61 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=58.3
Q ss_pred CCCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhc---CCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEE
Q 033232 5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (124)
Q Consensus 5 ~~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~---~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~i 81 (124)
..+..+-|.|++|||| |++..+..++++++.. +.||.+.+.|.|+|.|..|++++ ++|++.|++.+
T Consensus 31 ~d~~i~~ivl~~~s~G---------g~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aa--D~i~a~~~s~~ 99 (208)
T cd07023 31 EDDSVKAVVLRINSPG---------GSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAA--DKIVANPTTIT 99 (208)
T ss_pred hCCCCcEEEEEEECCC---------CCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhC--CEEEECCCCeE
Confidence 3455788999999999 9999999999988755 46999999999999999999999 57999999988
No 24
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=98.33 E-value=2.2e-06 Score=64.39 Aligned_cols=71 Identities=21% Similarity=0.153 Sum_probs=60.8
Q ss_pred CCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHh---hcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMA---YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 7 ~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~---~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
+..+-|.|.+||+| |++.....+.+.++ .++.||.+.+.|.|+|.|..|++++ +.|++.|.+++++
T Consensus 38 ~~v~~vvl~~~~~g---------g~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~--D~i~a~~~a~~~~ 106 (177)
T cd07014 38 PKVKAIVLRVNSPG---------GSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPA--NYIVANPSTLVGS 106 (177)
T ss_pred CCceEEEEEeeCCC---------cCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhC--CEEEECCCCeEEE
Confidence 34567899999999 99887777777665 4467999999999999999999999 5799999999999
Q ss_pred ecCCC
Q 033232 84 YLPVV 88 (124)
Q Consensus 84 Hqp~~ 88 (124)
|.++.
T Consensus 107 ~G~~~ 111 (177)
T cd07014 107 IGIFG 111 (177)
T ss_pred echHh
Confidence 98873
No 25
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=98.29 E-value=3.1e-06 Score=65.61 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=58.4
Q ss_pred CCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcC--CCeEEEEcceeccHHHHHHhcCCCCceeeccCcEE
Q 033232 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK--SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (124)
Q Consensus 7 ~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~--~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~i 81 (124)
+..+-|.|.+||+| |++.....|+++|+.++ .||.+.+.|.|+|.|..|++++ +++++.|++.+
T Consensus 41 ~~i~~Vvl~~~s~g---------g~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~a--D~i~a~~~a~~ 106 (214)
T cd07022 41 PDVRAIVLDIDSPG---------GEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAA--DRIVVTPTAGV 106 (214)
T ss_pred CCCcEEEEEEeCCC---------CcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcC--CEEEEcCCCeE
Confidence 34578899999999 99999999999999887 8999999999999999999999 57999999995
No 26
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.26 E-value=9.2e-06 Score=72.04 Aligned_cols=63 Identities=27% Similarity=0.252 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhc---CCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEE
Q 033232 8 ASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (124)
Q Consensus 8 ~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~---~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~i 81 (124)
..+.|.|+||||| |+++++..|+++|+.. +.||.+...|+|+|.|-.|.++| +++++.|++.+
T Consensus 346 ~VkaIVLrinSpG---------Gs~~ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aa--D~I~a~p~t~~ 411 (584)
T TIGR00705 346 DIKAVVLRINSPG---------GSVFASEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAA--DYIVASPNTIT 411 (584)
T ss_pred CceEEEEEecCCC---------CCHHHHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhC--CEEEECCCCee
Confidence 4579999999999 9999999999999754 36899999999999999999999 57999999987
No 27
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=98.18 E-value=7.7e-06 Score=63.36 Aligned_cols=64 Identities=25% Similarity=0.256 Sum_probs=56.1
Q ss_pred CCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHh---hcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEE
Q 033232 8 ASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMA---YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK 82 (124)
Q Consensus 8 ~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~---~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iM 82 (124)
..+.|.|.+||+| |++.+...++++|+ ..+.||.+.+.|.|+|.|..|.+++ +++++.|++++.
T Consensus 38 ~v~~ivL~~~s~G---------g~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~a--D~i~a~~~a~~g 104 (211)
T cd07019 38 KVKAIVLRVNSPG---------GSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPA--NYIVANPSTLTG 104 (211)
T ss_pred CceEEEEEEcCCC---------cCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhC--CEEEEcCCCEEE
Confidence 4588999999999 99999888888765 4567999999999999999999999 579999998873
No 28
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.82 E-value=6.6e-05 Score=62.93 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=52.2
Q ss_pred CCCCEEEEEcCCCCCCCCCCccchHhhH---HHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 8 ASKPIYLYINSSGTQNEKKESVGAETDA---YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 8 ~~~~I~lyINSpG~~~~~~~~~G~v~~g---~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
+.+.|.|.||||| |++... ......++..+.||++...++|+|.|=++.+++ ++-++.|.+.+..
T Consensus 122 ~~~aVvLridSpG---------G~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaA--D~I~A~P~a~vGS 189 (330)
T PRK11778 122 PGDEVLLRLESPG---------GVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVA--DKIIAAPFAIVGS 189 (330)
T ss_pred CCCeEEEEEeCCC---------CchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhC--CEEEECCCCeEEe
Confidence 4468999999999 998763 333445566667999999999999999999999 5688999887653
No 29
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=97.71 E-value=8.3e-05 Score=58.01 Aligned_cols=67 Identities=19% Similarity=0.093 Sum_probs=57.7
Q ss_pred CCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhc---CCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEe
Q 033232 8 ASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (124)
Q Consensus 8 ~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~---~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiH 84 (124)
..+-|.|.+|||| |.+.+.-.|+++|+.. +.||.++..| |+|.+-.|.+++ +++++.|++.+.+.
T Consensus 46 ~ik~vvL~~~s~g---------g~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaa--d~I~a~p~~~vg~i 113 (222)
T cd07018 46 RIKGIVLDLDGLS---------GGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAA--DEIYLNPSGSVELT 113 (222)
T ss_pred CeEEEEEECCCCC---------CCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhC--CEEEECCCceEEee
Confidence 4577999999999 9999999999999754 4699999887 889888999999 57999999999997
Q ss_pred cC
Q 033232 85 LP 86 (124)
Q Consensus 85 qp 86 (124)
-.
T Consensus 114 Gv 115 (222)
T cd07018 114 GL 115 (222)
T ss_pred cc
Confidence 43
No 30
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0021 Score=55.88 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEc---ceeccHHHHHHhcCCCCceeeccCcEEEEe
Q 033232 8 ASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (124)
Q Consensus 8 ~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~---G~AaS~aslil~aG~kg~R~~~p~a~iMiH 84 (124)
..+.+.+.+|+|| |-+++...|..++...+.||..++. +.|+|+|+.|+++.+ .=+|.|.+.+-=-
T Consensus 56 ~a~~vvl~ldTPG---------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~h--iaaMAPgT~iGaa 124 (436)
T COG1030 56 NAAAVVLELDTPG---------GLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATH--IAAMAPGTNIGAA 124 (436)
T ss_pred CCcEEEEEecCCC---------chHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcC--hhhhCCCCccccc
Confidence 3478999999999 9999999999999999999776553 379999999999994 5689999999988
Q ss_pred cCCC
Q 033232 85 LPVV 88 (124)
Q Consensus 85 qp~~ 88 (124)
+|-.
T Consensus 125 ~Pi~ 128 (436)
T COG1030 125 TPIA 128 (436)
T ss_pred ceec
Confidence 8874
No 31
>PRK10949 protease 4; Provisional
Probab=97.15 E-value=0.0015 Score=58.71 Aligned_cols=63 Identities=25% Similarity=0.261 Sum_probs=54.9
Q ss_pred CCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhc---CCCeEEEEcceeccHHHHHHhcCCCCceeeccCcE
Q 033232 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 7 ~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~---~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~ 80 (124)
+..+-|.|.||||| |++...-.|++.|+.. +.||.+...++|+|.|=.|.+++ ++-++.|.+.
T Consensus 363 ~~vkaVvLrInSpG---------Gs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aa--d~I~a~p~t~ 428 (618)
T PRK10949 363 PKVKAIVLRVNSPG---------GSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPA--NYIVASPSTL 428 (618)
T ss_pred CCCcEEEEEecCCC---------CcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhc--CEEEECCCCc
Confidence 45678999999999 9999999999999755 36899998999999999999999 4678888764
No 32
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=97.11 E-value=0.00059 Score=54.76 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=58.4
Q ss_pred EEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 14 LYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 14 lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
+.+|||| |+|.+++++-..++..+-..-.-...+|+|.-.++|++| -+|++-|.+.+-+|||..+
T Consensus 109 v~lnSpG---------Gsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagG--vrRvve~~ayiGVHq~~~~ 173 (245)
T COG3904 109 VTLNSPG---------GSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGG--VRRVVEDFAYIGVHQITTT 173 (245)
T ss_pred EEecCCC---------CcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcc--eeeeecccceeeeeecccc
Confidence 6789999 999999999999999887777777889999999999999 5799999999999999853
No 33
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=95.62 E-value=0.068 Score=42.98 Aligned_cols=96 Identities=15% Similarity=0.147 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCCCCCCC-CCCccchHhhHHHHHHHHh---hcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 8 ASKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMA---YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 8 ~~~~I~lyINSpG~~~~-~~~~~G~v~~g~aIyd~m~---~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
.+.||-..+++||-.-. .-|..|-...+-.+.+++. ..+.|+.+++.|.+.|.|.+.+..+. +..+++|++.+-.
T Consensus 65 f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~a-d~v~Alp~A~i~v 143 (238)
T TIGR03134 65 DKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQA-DRIIALPGAMVHV 143 (238)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCc-CeEEEcCCcEEEe
Confidence 56899999999993221 2222233333333344444 44599999999999998888885433 6789999998887
Q ss_pred ecCCCCC---CCcCHHHHHHHHHHH
Q 033232 84 YLPVVGR---SSGPVTDMWRKVFPT 105 (124)
Q Consensus 84 Hqp~~~~---~~G~a~di~~~a~el 105 (124)
=.|. +. ++-+.++.+..+++.
T Consensus 144 m~~e-~aa~I~~~~~~~~~e~a~~~ 167 (238)
T TIGR03134 144 MDLE-SMARVTKRSVEELEALAKSS 167 (238)
T ss_pred cCHH-HHHHHHccCHhHHHHHHHhh
Confidence 6665 22 334555555555443
No 34
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=95.54 E-value=0.047 Score=45.75 Aligned_cols=74 Identities=24% Similarity=0.266 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCCCCC-CCCccchHhhHHHHHHH---HhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEe
Q 033232 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADA---MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~-~~~~~G~v~~g~aIyd~---m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiH 84 (124)
.-||.-.+++||.--. .-|.-|. +-+|... +...+.|+.++++|-++|.|++.++.+ +..+|.|++.+.+=
T Consensus 151 ~iPvVtlvDTpGa~~g~~aE~~G~---~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~a--D~v~m~~~a~~sVi 225 (316)
T TIGR00513 151 KMPIITFIDTPGAYPGIGAEERGQ---SEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVG--DKVNMLEYSTYSVI 225 (316)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHH---HHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccC--CEEEEecCceEEec
Confidence 4689999999993110 1111122 2344444 456678999999999999999888767 57899999999998
Q ss_pred cCC
Q 033232 85 LPV 87 (124)
Q Consensus 85 qp~ 87 (124)
.|.
T Consensus 226 sPE 228 (316)
T TIGR00513 226 SPE 228 (316)
T ss_pred CHH
Confidence 886
No 35
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=95.29 E-value=0.068 Score=46.57 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCCCCCCCCCccchHh--hHHHHHHHH---hhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 9 SKPIYLYINSSGTQNEKKESVGAET--DAYAIADAM---AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~~~~~~G~v~--~g~aIyd~m---~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
.-||.-+|++||.--.. +.+. .+-+|...+ ...+.|+.++++|-+.|.|++.+++| +..+|.||+.+.+
T Consensus 221 ~lPIVtLVDTpGA~pG~----~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~a--D~VlMle~A~ysV 294 (431)
T PLN03230 221 GFPILTFVDTPGAYAGI----KAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCG--NRMLMMENAVYYV 294 (431)
T ss_pred CCCEEEEEeCCCcCCCH----HHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcC--CEEEEecCCEEEe
Confidence 46899999999932111 1111 123455544 46668999999999999999999988 5789999999998
Q ss_pred ecCC
Q 033232 84 YLPV 87 (124)
Q Consensus 84 Hqp~ 87 (124)
=.|.
T Consensus 295 isPE 298 (431)
T PLN03230 295 ASPE 298 (431)
T ss_pred cCHH
Confidence 8885
No 36
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=95.01 E-value=0.24 Score=36.69 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=47.1
Q ss_pred hHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCCCC
Q 033232 34 DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS 91 (124)
Q Consensus 34 ~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~~~ 91 (124)
....++..+..++.|+.+.+-|.|.+.|+.+++++ +.|++.++++|.+..+..+..
T Consensus 81 ~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~--D~~i~~~~~~~~~pe~~~G~~ 136 (195)
T cd06558 81 ELQELLRALLRLPKPVIAAVNGAALGGGLELALAC--DIRIAAEDAKFGLPEVKLGLV 136 (195)
T ss_pred HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEEechhhhcCCC
Confidence 34566677778889999999999999999999999 689999999999888765433
No 37
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=94.97 E-value=0.1 Score=43.91 Aligned_cols=73 Identities=21% Similarity=0.178 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCCCCCCCCccchHhh--HHHHHHH---HhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 9 SKPIYLYINSSGTQNEKKESVGAETD--AYAIADA---MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~~~~~~G~v~~--g~aIyd~---m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
.-||.-.|+|||.- . | ++.... +-+|... |...+.|+.++++|-+.|.|++.++.+ +..+|.|++.+.+
T Consensus 154 ~lPIItlvDTpGA~-~-G--~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~a--D~V~m~e~a~~sV 227 (322)
T CHL00198 154 GLPILTFIDTPGAW-A-G--VKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIG--DSIMMLEYAVYTV 227 (322)
T ss_pred CCCEEEEEeCCCcC-c-C--HHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcC--CeEEEeCCeEEEe
Confidence 46899999999931 1 0 111211 2355544 456778999999999999999888877 6789999999999
Q ss_pred ecCC
Q 033232 84 YLPV 87 (124)
Q Consensus 84 Hqp~ 87 (124)
=.|.
T Consensus 228 isPE 231 (322)
T CHL00198 228 ATPE 231 (322)
T ss_pred cCHH
Confidence 8886
No 38
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=94.96 E-value=0.11 Score=43.60 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCCCCCC-CCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~-~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.-||.-.++|||.--. ..|.-|..........+|...+.|+.++++|-+.|.|++.++.+ +..+|.|++.+.+=.|.
T Consensus 151 ~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~a--D~v~m~~~A~~svisPE 228 (319)
T PRK05724 151 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVG--DRVLMLEYSTYSVISPE 228 (319)
T ss_pred CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhcc--CeeeeecCceEeecCHH
Confidence 4689999999993210 00111222222233444457778999999999999999988887 56899999999988886
No 39
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.87 E-value=0.11 Score=48.12 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCCCCC-CCCccchHhhHHHHHHH---HhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEe
Q 033232 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADA---MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~-~~~~~G~v~~g~aIyd~---m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiH 84 (124)
.-||.-.|+|||.--. ..|..|. +-+|... |...+.|+.++++|-++|.|++.++.+ +..+|.|++.+.+=
T Consensus 242 gLPIVtLVDTpGA~pG~~AEe~Gq---~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~a--D~VlMle~A~~sVi 316 (762)
T PLN03229 242 GFPIVTFIDTPGAYADLKSEELGQ---GEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCA--NKLLMLENAVFYVA 316 (762)
T ss_pred CCCEEEEEECCCcCCCchhHHHhH---HHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcC--CEEEEecCCeEEec
Confidence 4689999999993211 1222222 3345444 446678999999999999999999888 56899999998887
Q ss_pred cCC
Q 033232 85 LPV 87 (124)
Q Consensus 85 qp~ 87 (124)
-|.
T Consensus 317 sPE 319 (762)
T PLN03229 317 SPE 319 (762)
T ss_pred CHH
Confidence 776
No 40
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=94.85 E-value=0.15 Score=41.34 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCCCCCCCCccchHh--hH--HHHHHHH---hhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEE
Q 033232 9 SKPIYLYINSSGTQNEKKESVGAET--DA--YAIADAM---AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~~~~~~G~v~--~g--~aIyd~m---~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~i 81 (124)
.-||.-.++|||.- . |... .| -+|...+ ...+.|+.++++|-+.|.|++.++.+ +..+|.|++.+
T Consensus 98 ~lPvV~lvDtpGa~-~-----g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~--D~v~m~~~a~~ 169 (256)
T PRK12319 98 GRPVVTFINTAGAY-P-----GVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVA--DQVWMLENTMY 169 (256)
T ss_pred CCCEEEEEECCCcC-C-----CHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcC--CEEEEecCceE
Confidence 46899999999932 1 2222 12 3444443 45568999999999999999999877 57899999999
Q ss_pred EEecCC
Q 033232 82 KLYLPV 87 (124)
Q Consensus 82 MiHqp~ 87 (124)
.+=.|.
T Consensus 170 ~v~~pe 175 (256)
T PRK12319 170 AVLSPE 175 (256)
T ss_pred EEcCHH
Confidence 998886
No 41
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=92.29 E-value=0.55 Score=37.59 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=44.9
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGR 90 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~~ 90 (124)
.+++.|..++.||...+-|.|.+.|.-|.+++ +-|++.+.++|.+.....|.
T Consensus 104 ~~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl 155 (277)
T PRK08258 104 DLVKAMRACPQPIIAAVDGVCAGAGAILAMAS--DLRLGTPSAKTAFLFTRVGL 155 (277)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEEeccccccCc
Confidence 46677888899999999999999999999999 67999999999887766443
No 42
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=92.26 E-value=0.45 Score=37.72 Aligned_cols=48 Identities=19% Similarity=0.098 Sum_probs=40.8
Q ss_pred HHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEec
Q 033232 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 36 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHq 85 (124)
...+..|..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|-+=.
T Consensus 84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe 131 (261)
T PRK03580 84 FAGLTEIFDLDKPVIAAVNGYAFGGGFELALAA--DFIVCADNASFALPE 131 (261)
T ss_pred hHHHHHHHhCCCCEEEEECCeeehHHHHHHHHC--CEEEecCCCEEeCcc
Confidence 345677888899999999999999999999999 579999998876533
No 43
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=91.83 E-value=0.43 Score=37.90 Aligned_cols=49 Identities=8% Similarity=-0.086 Sum_probs=42.9
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV 88 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~ 88 (124)
.++.|..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|-+..+..
T Consensus 100 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~ 148 (272)
T PRK06210 100 RYHFLTALRKPVIAAINGACAGIGLTHALMC--DVRFAADGAKFTTAFARR 148 (272)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEeCCCEEechHHhc
Confidence 4567888899999999999999999999999 679999999998766553
No 44
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=91.80 E-value=0.46 Score=37.64 Aligned_cols=51 Identities=12% Similarity=0.030 Sum_probs=44.0
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
.++..|..++.||.+.+-|.|.+.|..+.+++ +.|++.++++|-+..+..|
T Consensus 94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~~e~~lG 144 (266)
T PRK05981 94 PFLRRLRNLPCPIVTAVNGPAAGVGMSFALMG--DLILCARSAYFLQAFRRIG 144 (266)
T ss_pred HHHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEecCCCEEechHhhcC
Confidence 35677888899999999999999999999999 6799999999987666543
No 45
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=91.61 E-value=0.48 Score=37.29 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=39.5
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
.++..|..++.|+...+-|.|.+.|.-|.+++ +-|++.++++|-+
T Consensus 77 ~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~ 121 (243)
T PRK07854 77 EMLHAIDAAPVPVIAAINGPAIGAGLQLAMAC--DLRVVAPEAYFQF 121 (243)
T ss_pred HHHHHHHhCCCCEEEEecCcccccHHHHHHhC--CEEEEcCCCEEec
Confidence 45667778899999999999999999999999 5799999998765
No 46
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=91.51 E-value=0.62 Score=36.18 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=43.2
Q ss_pred HHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 35 g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
...++..|..++.|+.+.+-|.|.+.|+.+++++ +.|++.+++.|-+-...
T Consensus 79 ~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~ 129 (245)
T PF00378_consen 79 FQELLSRLANFPKPTIAAVNGHAVGGGFELALAC--DFRIAAEDAKFGFPEVR 129 (245)
T ss_dssp HHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHS--SEEEEETTTEEETGGGG
T ss_pred hccccccchhhhhheeeccccccccccccccccc--ceEEeecccceeeeecc
Confidence 3467788889999999999999999999999999 68999999995554433
No 47
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=91.46 E-value=1.3 Score=34.86 Aligned_cols=54 Identities=19% Similarity=0.061 Sum_probs=47.0
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCCCCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS 92 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~~~~ 92 (124)
.++..|+.++.||...+-|.|.+.|.-|.+++ +-|++.++++|-+.....|..-
T Consensus 89 ~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~--D~ria~~~a~f~~pe~~iGl~P 142 (257)
T COG1024 89 DLLRALADLPKPVIAAVNGYALGGGLELALAC--DIRIAAEDAKFGLPEVNLGLLP 142 (257)
T ss_pred HHHHHHHhCCCCEEEEEcceEeechhhhhhcC--CeEEecCCcEecCcccccccCC
Confidence 36778889999999999999999999999999 5799999999999887654443
No 48
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=91.39 E-value=0.55 Score=37.21 Aligned_cols=49 Identities=18% Similarity=0.122 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.+++.|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|.+=...
T Consensus 83 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~ 131 (255)
T PRK08150 83 RVFDKIQYGRVPVIAALHGAVVGGGLELASAA--HIRVADESTYFALPEGQ 131 (255)
T ss_pred HHHHHHHhCCCCEEEEECCEEEcHHHHHHHhC--CEEEEeCCCEEeccccc
Confidence 45677888899999999999999999999999 57999999988764433
No 49
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=91.17 E-value=1.5 Score=34.71 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=41.5
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.+++.|..++.||.+.+-|.|.+.|.-|.+++ +-|++.++++|.+=...
T Consensus 91 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~ 139 (256)
T PRK06143 91 DLCDAVRHFPVPVIARIPGWCLGGGLELAAAC--DLRIAAHDAQFGMPEVR 139 (256)
T ss_pred HHHHHHHhCCCCEEEEECCEEeehhHHHHHhC--CEEEecCCCEEeCCccc
Confidence 45677788899999999999999999999999 57999999988764433
No 50
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=91.10 E-value=0.66 Score=36.56 Aligned_cols=50 Identities=8% Similarity=0.090 Sum_probs=42.1
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
++..|..++.||...+-|.|.+.|.-+.+++ +-|++.++++|-+..+..|
T Consensus 81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~~~~~~G 130 (248)
T PRK06072 81 IIREIRFSDKIYISAINGVTAGACIGIALST--DFKFASRDVKFVTAFQRLG 130 (248)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEecchhhcC
Confidence 4566778889999999999999999999999 5799999999887655543
No 51
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=90.99 E-value=0.53 Score=37.09 Aligned_cols=45 Identities=16% Similarity=0.044 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
.+++.|..++.||...+-|.|.+.|..|++++ +-|++.++++|.+
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~ 133 (255)
T PRK07260 89 EISFAIKQLPKPVIMCVDGAVAGAAANMAVAA--DFCIASTKTKFIQ 133 (255)
T ss_pred HHHHHHHcCCCCEEEEecCeeehhhHHHHHhC--CEEEEeCCCEEec
Confidence 45667788999999999999999999999999 5799999998875
No 52
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=90.90 E-value=0.79 Score=35.55 Aligned_cols=50 Identities=20% Similarity=0.102 Sum_probs=41.4
Q ss_pred HHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccC-cEEEEecCC
Q 033232 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN-SSTKLYLPV 87 (124)
Q Consensus 36 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~-a~iMiHqp~ 87 (124)
..++..|..++.|+.+.+-|.|.+.|.-|++++ +.|++.+. ++|-+-...
T Consensus 81 ~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~--D~rva~~~~a~f~~pe~~ 131 (229)
T PRK06213 81 STLARRLLSHPKPVIVACTGHAIAKGAFLLLSA--DYRIGVHGPFKIGLNEVA 131 (229)
T ss_pred HHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhC--CeeeEecCCcEEECchhh
Confidence 455667778899999999999999999999999 57999998 877664433
No 53
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=90.82 E-value=0.57 Score=37.15 Aligned_cols=48 Identities=17% Similarity=0.053 Sum_probs=41.2
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
+++.|+.++.||...+-|.|.+.|.-|++++ +-|++.++++|-+-...
T Consensus 92 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~pe~~ 139 (262)
T PRK07468 92 MLKALNDLPKPLIGRIQGQAFGGGVGLISVC--DVAIAVSGARFGLTETR 139 (262)
T ss_pred HHHHHHcCCCCEEEEECCEEEhHHHHHHHhC--CEEEEeCCCEEeCchhc
Confidence 5777889999999999999999999999999 57999999887664433
No 54
>PRK05869 enoyl-CoA hydratase; Validated
Probab=90.78 E-value=0.66 Score=36.15 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=43.0
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
.+++.|..++.||.+.+-|.|.+.|..|.+++ +.|++.++++|-+-....|
T Consensus 90 ~~~~~i~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G 140 (222)
T PRK05869 90 QAVDAVAAIPKPTVAAITGYALGAGLTLALAA--DWRVSGDNVKFGATEILAG 140 (222)
T ss_pred HHHHHHHhCCCCEEEEEcCEeecHHHHHHHhC--CEEEecCCCEEcCchhccC
Confidence 46677888899999999999999999999999 5799999998877554433
No 55
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=90.62 E-value=0.51 Score=37.75 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.+++.|..++.||...+-|.|.+.|..|.+++ +-|++.++++|.+-...
T Consensus 102 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~ 150 (275)
T PLN02664 102 DAITAIEQCRKPVIAAIHGACIGGGVDIVTAC--DIRYCSEDAFFSVKEVD 150 (275)
T ss_pred HHHHHHHhCCCCEEEEECCccccchHHHHHhC--CEEEecCCCEeccHHHh
Confidence 35667888899999999999999999999999 57999999998775444
No 56
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=90.49 E-value=0.67 Score=36.56 Aligned_cols=48 Identities=13% Similarity=-0.033 Sum_probs=41.0
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
+++.|..++.||.+.+-|.|.+.|..|.+++ +.|++.++++|-+-...
T Consensus 85 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~pe~~ 132 (256)
T TIGR02280 85 LVRRLRALPLPVVCAVNGVAAGAGANLALAC--DIVLAAESARFIQAFAK 132 (256)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEEeChhhh
Confidence 4567788899999999999999999999999 67999999988764433
No 57
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=90.39 E-value=1.2 Score=35.10 Aligned_cols=49 Identities=12% Similarity=-0.050 Sum_probs=42.3
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.++..|..++.||...+.|.|.+.|..|++++ +.|++.++++|-+..-.
T Consensus 89 ~~~~~l~~~~kpvIAav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~ 137 (260)
T PRK07511 89 DWIRAIRAFPKPVIAAVEGAAAGAGFSLALAC--DLLVAARDAKFVMAYVK 137 (260)
T ss_pred HHHHHHHcCCCCEEEEECCeeehHHHHHHHhC--CEEEeeCCCEEeccccc
Confidence 46667778899999999999999999999999 68999999988875544
No 58
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=90.38 E-value=0.9 Score=35.86 Aligned_cols=51 Identities=14% Similarity=0.049 Sum_probs=43.4
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
.+++.|..++.||...+-|.|.+.|.-|.+++ +.|++.++++|.+-....|
T Consensus 83 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G 133 (255)
T PRK09674 83 QLWQRLQAFNKPLIAAVNGYALGAGCELALLC--DIVIAGENARFGLPEITLG 133 (255)
T ss_pred HHHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEecCCCEEeCchhhcC
Confidence 35677888999999999999999999999999 6799999998877654433
No 59
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=90.36 E-value=1.1 Score=35.27 Aligned_cols=51 Identities=16% Similarity=0.025 Sum_probs=43.7
Q ss_pred HHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCC
Q 033232 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV 88 (124)
Q Consensus 36 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~ 88 (124)
..+++.|..++.|+...+-|.|.+.|.-|++++ +.|++.++++|-+.....
T Consensus 86 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~ 136 (259)
T PRK06688 86 NRFLRAIAALPKPVVAAVNGPAVGVGVSLALAC--DLVYASESAKFSLPFAKL 136 (259)
T ss_pred HHHHHHHHcCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEecCchhhc
Confidence 456777888899999999999999999999999 579999999888766443
No 60
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=90.32 E-value=0.84 Score=36.39 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=43.2
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
+++.|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|.+.....|
T Consensus 98 ~~~~i~~~~kPvIaav~G~a~GgG~~Lalac--D~~ia~~~a~f~~pe~~~G 147 (269)
T PRK06127 98 AQAALADYAKPTIACIRGYCIGGGMGIALAC--DIRIAAEDSRFGIPAARLG 147 (269)
T ss_pred HHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEeeCCCEeeCchhhhC
Confidence 5567788899999999999999999999999 6799999999988765533
No 61
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=90.28 E-value=0.81 Score=36.11 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEec
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHq 85 (124)
.+++.|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|.+=.
T Consensus 91 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe 137 (260)
T PRK05980 91 AMTARLEAFPKPVIAAVNGLAFGGGCEITEAV--HLAIASERALFAKPE 137 (260)
T ss_pred HHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhC--CEEEecCCCEecCcc
Confidence 35667888899999999999999999999999 579999998877643
No 62
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=90.06 E-value=0.94 Score=35.85 Aligned_cols=49 Identities=16% Similarity=0.034 Sum_probs=41.7
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV 88 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~ 88 (124)
+++.|..++.|+...+-|.|.+.|.-|++++ +-|++.++++|.+-....
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~ 143 (266)
T PRK09245 95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMC--DIRIASETARFAESFVKL 143 (266)
T ss_pred HHHHHHcCCCCEEEEECCEeecHHHHHHHhC--CEEEecCCCEEccccccc
Confidence 4567778889999999999999999999999 689999999887655443
No 63
>PRK08139 enoyl-CoA hydratase; Validated
Probab=90.03 E-value=2.2 Score=33.98 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=42.6
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
.+++.|..++.||...+-|.|.+.|.-|++++ +-|++.++++|-+-....|
T Consensus 95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G 145 (266)
T PRK08139 95 RVMQAIVALPQPVIARVHGIATAAGCQLVASC--DLAVAADTARFAVPGVNIG 145 (266)
T ss_pred HHHHHHHhCCCCEEEEECceeeHHHHHHHHhC--CEEEEeCCCEEeCcccCcC
Confidence 35667788899999999999999999999999 6799999998866554433
No 64
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=90.00 E-value=2.2 Score=33.68 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=42.9
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
.+++.|..++.||.+.+-|.|.+.|.-|.+++ +-|++.++++|-+=.+..|
T Consensus 85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~G 135 (256)
T TIGR03210 85 ELHSAIRDVPKPVIARVQGYAIGGGNVLVTIC--DLTIASEKAQFGQVGPKVG 135 (256)
T ss_pred HHHHHHHhCCCCEEEEECCEEehhhHHHHHhC--CEEEEeCCCEEeccccccc
Confidence 35677888899999999999999999999999 5799999999887554433
No 65
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=89.92 E-value=0.73 Score=36.44 Aligned_cols=53 Identities=21% Similarity=0.100 Sum_probs=44.3
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCCCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS 91 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~~~ 91 (124)
.+++.|..++.||.+.+-|.|.+.|.-|.+++ +-|++.++++|-+-....|..
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~ 140 (257)
T PRK06495 88 ECFHAIRECAKPVIAAVNGPALGAGLGLVASC--DIIVASENAVFGLPEIDVGLA 140 (257)
T ss_pred HHHHHHHhCCCCEEEEECCeeehhHHHHHHhC--CEEEecCCCEeeChhhccCcc
Confidence 35667888899999999999999999999999 579999999988766654433
No 66
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=89.91 E-value=0.94 Score=35.68 Aligned_cols=49 Identities=14% Similarity=0.021 Sum_probs=42.8
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.++..|..++.||...+-|.|.+.|..|.+++ +.|++.++++|.+-...
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~la~ac--D~ria~~~a~f~~pe~~ 136 (251)
T PRK06023 88 DFLIALAEAEKPIVSGVDGLAIGIGTTIHLHC--DLTFASPRSLFRTPFVD 136 (251)
T ss_pred HHHHHHHhCCCCEEEEeCCceecHHHHHHHhC--CEEEEeCCCEecCcccc
Confidence 45677888899999999999999999999999 68999999999875544
No 67
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=89.84 E-value=0.75 Score=36.89 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEec
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHq 85 (124)
.+++.|..++.||...+.|.|.+.|.-|.+++ +-|++.++++|.+=.
T Consensus 95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe 141 (275)
T PRK09120 95 GWWRRLRWYQKPTIAMVNGWCFGGGFSPLVAC--DLAIAADEAQFGLSE 141 (275)
T ss_pred HHHHHHHhCCCCEEEEEcCEEechhHHHHHhC--CEEEEeCCcEecCCc
Confidence 35667778899999999999999999999999 579999999887743
No 68
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=89.84 E-value=0.85 Score=36.04 Aligned_cols=48 Identities=15% Similarity=-0.024 Sum_probs=41.2
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
++..|..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|.+-...
T Consensus 91 ~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~ 138 (262)
T PRK08140 91 LVRRLRALPLPVIAAVNGVAAGAGANLALAC--DIVLAARSASFIQAFVK 138 (262)
T ss_pred HHHHHHhCCCCEEEEECCeeehhHHHHHHhC--CEEEecCCCEEeccccc
Confidence 5667888899999999999999999999999 68999999998754433
No 69
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=89.83 E-value=0.9 Score=36.13 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=42.7
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
.+++.|..++.||...+-|.|.+.|.-|++++ +-|++.++++|-+-....|
T Consensus 100 ~~~~~i~~~~kpvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G 150 (272)
T PRK06142 100 AAINAVADCRKPVIAAVQGWCIGGGVDLISAC--DMRYASADAKFSVREVDLG 150 (272)
T ss_pred HHHHHHHhCCCCEEEEecCccccchHHHHHhC--CEEEecCCCeecchhhhhC
Confidence 45667788899999999999999999999999 5799999998866554433
No 70
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=89.77 E-value=1.3 Score=34.86 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=42.0
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.++..|..++.||.+.+-|.|.+.|..|.+++ +-|++.++++|-+....
T Consensus 85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~ 133 (249)
T PRK07110 85 NLYSLALNCPIPVIAAMQGHAIGGGLVLGLYA--DIVVLSRESVYTANFMK 133 (249)
T ss_pred HHHHHHHcCCCCEEEEecCceechHHHHHHhC--CEEEEeCCCEecCchhc
Confidence 56777888999999999999999999999999 68999999987654433
No 71
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=89.72 E-value=0.76 Score=33.76 Aligned_cols=42 Identities=21% Similarity=0.024 Sum_probs=30.5
Q ss_pred HhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEec
Q 033232 42 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 42 m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHq 85 (124)
.+..+.||++++.+.++|.+=+|++++ ++.++.|.+.+...-
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~a--d~I~~~p~s~vgsiG 43 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAA--DEIYANPSSSVGSIG 43 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTS--SEEEE-TT-EEE---
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcC--CEEEecCCCEEEEeC
Confidence 355678999999999999999999999 578999999876543
No 72
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=89.71 E-value=1.2 Score=34.97 Aligned_cols=48 Identities=19% Similarity=0.070 Sum_probs=40.7
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.+..|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|-+....
T Consensus 87 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~ 134 (249)
T PRK05870 87 GFLAVASCPLPTIAAVNGAAVGAGLNLALAA--DVRIAGPKALFDARFQK 134 (249)
T ss_pred HHHHHHhCCCCEEEEECCEeEchhHHHHHhC--CEEEEcCCCEEeCcccc
Confidence 4556778889999999999999999999999 57999999998765543
No 73
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=89.62 E-value=0.85 Score=36.05 Aligned_cols=49 Identities=16% Similarity=0.107 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.+++.|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|.+-...
T Consensus 88 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~ 136 (260)
T PRK07657 88 TTMEMVEQLPQPVIAAINGIALGGGLELALAC--DFRIAAESASLGLTETT 136 (260)
T ss_pred HHHHHHHhCCCCEEEEEcCEeechHHHHHHhC--CEEEeeCCCEEcCchhc
Confidence 45677788899999999999999999999999 67999999988765544
No 74
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=89.60 E-value=1.3 Score=39.89 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCCCCCC-CCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcC--CCCceeeccCcEEEEec
Q 033232 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~-~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG--~kg~R~~~p~a~iMiHq 85 (124)
.-|+-..+|+||...- +-|.-|-+..+-.+.+++...+.|..|+.+|.+.+.|.+.++.. .++..++.|++++-.=.
T Consensus 401 ~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~vmg 480 (569)
T PLN02820 401 GIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIGVMG 480 (569)
T ss_pred CCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEEecC
Confidence 3588899999995432 23333667777788888888999999999999999988888643 34567788888887655
Q ss_pred CC
Q 033232 86 PV 87 (124)
Q Consensus 86 p~ 87 (124)
|.
T Consensus 481 ~e 482 (569)
T PLN02820 481 GA 482 (569)
T ss_pred HH
Confidence 53
No 75
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=89.52 E-value=1 Score=35.55 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=41.3
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
++..|+.++.||.+.+-|.|.+.|.-|.+++ +-|++.++++|-+....
T Consensus 94 ~~~~~~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~ 141 (262)
T PRK07509 94 VSLGWRRLPVPVIAALEGVCFGGGLQIALGA--DIRIAAPDTKLSIMEAK 141 (262)
T ss_pred HHHHHHhCCCCEEEEECCeeecchHHHHHhC--CEEEecCCCEeecchhc
Confidence 3455678899999999999999999999999 57999999988886644
No 76
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=89.50 E-value=1.2 Score=35.20 Aligned_cols=49 Identities=12% Similarity=-0.022 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.++..|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|.+-...
T Consensus 88 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~va~~~a~f~~pe~~ 136 (260)
T PRK05809 88 KVFRKLENLDKPVIAAINGFALGGGCELSMAC--DIRIASEKAKFGQPEVG 136 (260)
T ss_pred HHHHHHHcCCCCEEEEEcCeeecHHHHHHHhC--CEEEeeCCCEEeCcccc
Confidence 46677888899999999999999999999999 57999999988765544
No 77
>PLN02888 enoyl-CoA hydratase
Probab=89.45 E-value=1.3 Score=35.27 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLP 86 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp 86 (124)
.++..|..++.||.+.+-|.|.+.|..|.+++ +.|++.++++|.+=..
T Consensus 90 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~ 137 (265)
T PLN02888 90 DPVAQMERCRKPIIGAINGFAITAGFEIALAC--DILVASRGAKFIDTHA 137 (265)
T ss_pred HHHHHHHhCCCCEEEEECCeeechHHHHHHhC--CEEEecCCCEecCccc
Confidence 34566778889999999999999999999999 5799999998876433
No 78
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=89.44 E-value=2.6 Score=33.26 Aligned_cols=49 Identities=16% Similarity=0.068 Sum_probs=41.4
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.++..|..++.||.+.+-|.|.+.|.-|++++ +-|++.++++|.+-...
T Consensus 90 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~ 138 (262)
T PRK05995 90 DMLRAIYRCPKPVIARVHGDAYAGGMGLVAAC--DIAVAADHAVFCLSEVR 138 (262)
T ss_pred HHHHHHHcCCCCEEEEECCEEEhhHHHHHHhC--CEEEeeCCCEEeCcccc
Confidence 35566778889999999999999999999999 57999999988765444
No 79
>PLN02600 enoyl-CoA hydratase
Probab=89.32 E-value=0.94 Score=35.73 Aligned_cols=47 Identities=15% Similarity=-0.021 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEec
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHq 85 (124)
.++..|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|.+-.
T Consensus 79 ~~~~~l~~~~kPvIAav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe 125 (251)
T PLN02600 79 STFSSLEALSIPTIAVVEGAALGGGLELALSC--DLRICGEEAVFGLPE 125 (251)
T ss_pred HHHHHHHhCCCCEEEEecCeecchhHHHHHhC--CEEEeeCCCEEeCcc
Confidence 34566778889999999999999999999999 679999999887733
No 80
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=89.15 E-value=1.2 Score=35.40 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=43.7
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
.+++.|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|.+-....|
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G 138 (259)
T TIGR01929 88 DVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVC--DLTIAAENARFGQTGPKVG 138 (259)
T ss_pred HHHHHHHhCCCCEEEEEcCEEehHHHHHHHhC--CEEEecCCCEecCcccccc
Confidence 45677888899999999999999999999999 5799999999888665544
No 81
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=89.15 E-value=1 Score=35.57 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.++..|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|-+-...
T Consensus 86 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~ 134 (258)
T PRK09076 86 EAFEALSAFRGVSIAAINGYAMGGGLECALAC--DIRIAEEQAQMALPEAS 134 (258)
T ss_pred HHHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEecCCCEeeCcccc
Confidence 35667788899999999999999999999999 57999999988775444
No 82
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=89.14 E-value=0.91 Score=35.93 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=40.5
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
++..|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+....
T Consensus 90 ~~~~l~~~~~pvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~ 137 (260)
T PRK07659 90 IVVTLYTMPKLTISAIHGPAAGLGLSIALTA--DYVIADISAKLAMNFIG 137 (260)
T ss_pred HHHHHHhCCCCEEEEecCceecHHHHHHHhC--CEEEEcCCCEEcCchhh
Confidence 4455667889999999999999999999999 67999999988765543
No 83
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=88.95 E-value=1 Score=35.64 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.++..|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|-+=...
T Consensus 80 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~ 128 (251)
T TIGR03189 80 KLVIAMLDSPVPILVAVRGQCLGGGLEVAAAG--NLMFAAPDAKLGQPEIV 128 (251)
T ss_pred HHHHHHHhCCCCEEEEecCeeeeHHHHHHHhC--CEEEEcCCCEEeCchhh
Confidence 35567778899999999999999999999999 57999999887774443
No 84
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=88.90 E-value=1.3 Score=35.90 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=42.6
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV 88 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~ 88 (124)
++..|..++.||...+-|.|.+.|.-|++++ +-|++.++++|-+-....
T Consensus 105 ~~~~l~~~pkPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~ 153 (296)
T PRK08260 105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAM--DIRLASTAARFGFVFGRR 153 (296)
T ss_pred HHHHHHhCCCCEEEEECCeeehHhHHHHHhC--CEEEeeCCCEEecchhhc
Confidence 5677888899999999999999999999999 579999999988766543
No 85
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=88.81 E-value=2.4 Score=33.48 Aligned_cols=49 Identities=6% Similarity=-0.099 Sum_probs=41.5
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.++..|..++.||...+-|.|.+.|..|.+++ +-|++.++++|-+....
T Consensus 87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~ 135 (255)
T PRK07112 87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAAS--DIVIADETAPFSLSELL 135 (255)
T ss_pred HHHHHHHcCCCCEEEEEecEEEcchhHHHHcC--CEEEEcCCCEEeCchhh
Confidence 35566777889999999999999999999999 57999999988775544
No 86
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=88.51 E-value=1 Score=35.38 Aligned_cols=48 Identities=15% Similarity=-0.013 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLP 86 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp 86 (124)
.++..|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|-+-..
T Consensus 85 ~~~~~l~~~~kpvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~ 132 (257)
T PRK07658 85 VTFERVEKFSKPVIAAIHGAALGGGLELAMSC--HIRFATESAKLGLPEL 132 (257)
T ss_pred HHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhC--CEEEecCCCcccCccc
Confidence 46677888999999999999999999999999 5799999988766443
No 87
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=88.46 E-value=1.3 Score=35.31 Aligned_cols=48 Identities=10% Similarity=-0.143 Sum_probs=41.4
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLP 86 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp 86 (124)
.+++.|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|-+=..
T Consensus 85 ~~~~~i~~~~kPvIAaV~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~ 132 (258)
T PRK06190 85 NPSPAWPAMRKPVIGAINGAAVTGGLELALAC--DILIASERARFADTHA 132 (258)
T ss_pred HHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEeCCCEEECccc
Confidence 46677888999999999999999999999999 5799999998875433
No 88
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=88.43 E-value=1.6 Score=38.56 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCCCCC-CCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcC--CCCceeeccCcEEEEec
Q 033232 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~-~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG--~kg~R~~~p~a~iMiHq 85 (124)
.-||...+||||.... +.|--|-+..+-.+++++.....|..+++.|.++|.|.+.+++. ..+..++.|++++.+=.
T Consensus 350 ~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v~~ 429 (512)
T TIGR01117 350 NIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAVMG 429 (512)
T ss_pred CCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEeecC
Confidence 5699999999994221 22222456667778888888889999999999999876666431 24678899999999888
Q ss_pred CC
Q 033232 86 PV 87 (124)
Q Consensus 86 p~ 87 (124)
|.
T Consensus 430 pe 431 (512)
T TIGR01117 430 PA 431 (512)
T ss_pred HH
Confidence 76
No 89
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=88.30 E-value=1.2 Score=35.37 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=39.3
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
.++..|..++.||.+.+-|.|.+.|.-+.+++ +-|++.++++|-+
T Consensus 93 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~ 137 (262)
T PRK06144 93 RVLGALEQLRVPTIAAIAGACVGGGAAIAAAC--DLRIATPSARFGF 137 (262)
T ss_pred HHHHHHHhCCCCEEEEECCeeeehHHHHHHhC--CEEEecCCCEeec
Confidence 35566778889999999999999999999999 6799999998865
No 90
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=88.15 E-value=0.99 Score=35.67 Aligned_cols=47 Identities=17% Similarity=0.029 Sum_probs=39.7
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEec
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHq 85 (124)
.++..|..++.||.+.+-|.|.+.|.-|++++ +-|++.+.++|-+=.
T Consensus 92 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe 138 (260)
T PRK07827 92 ALLRAIVELPKPVIAAIDGHVRAGGFGLVGAC--DIVVAGPESTFALTE 138 (260)
T ss_pred HHHHHHHhCCCCEEEEEcCeeecchhhHHHhC--CEEEEcCCCEEeCcc
Confidence 35566778899999999999999999999999 579999888776643
No 91
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=88.07 E-value=1.3 Score=35.03 Aligned_cols=48 Identities=19% Similarity=0.060 Sum_probs=40.1
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLP 86 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp 86 (124)
.+++.|..++.||...+-|.|.+.|.-|.+++ +.|++.++++|-+=..
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~ 136 (261)
T PRK08138 89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHA--DIIVAGESASFGQPEI 136 (261)
T ss_pred HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhC--CEEEecCCCEeeCccc
Confidence 35667778899999999999999999999999 5788888888766443
No 92
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=88.07 E-value=0.78 Score=40.06 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCCCCC-CCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcC--CCCceeeccCcEEEEec
Q 033232 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~-~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG--~kg~R~~~p~a~iMiHq 85 (124)
+-||-..+|.||...- .-|.-|-+..+-.+.+++...+.|+.|+.+|-+.|.|.+.++.. ..+..++.|++++-+-.
T Consensus 329 ~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~ 408 (493)
T PF01039_consen 329 NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMG 408 (493)
T ss_dssp T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-
T ss_pred CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeecC
Confidence 3589999999994332 22223556678899999999999999999999999877666554 23467888999988877
Q ss_pred CC
Q 033232 86 PV 87 (124)
Q Consensus 86 p~ 87 (124)
|.
T Consensus 409 ~e 410 (493)
T PF01039_consen 409 PE 410 (493)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 93
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=88.02 E-value=1.2 Score=35.60 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=39.2
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
.+++.|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|.+
T Consensus 100 ~~~~~l~~~~kPvIaav~G~a~GgG~~Lalac--D~ria~~~a~f~~ 144 (276)
T PRK05864 100 DVILALRRLHQPVIAAVNGPAIGGGLCLALAA--DIRVASSSAYFRA 144 (276)
T ss_pred HHHHHHHhCCCCEEEEECCEeehhHHHHHHhC--CEEEeeCCCEecC
Confidence 35567778899999999999999999999999 5799999988765
No 94
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=87.98 E-value=1.3 Score=35.22 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLP 86 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp 86 (124)
.++..|..++.||.+.+-|.|.+.|.-|.+++ +-|++.+.++|.+=..
T Consensus 87 ~l~~~i~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~ 134 (261)
T PRK11423 87 QILRMIQKFPKPVIAMVEGSVWGGAFELIMSC--DLIIAASTSTFAMTPA 134 (261)
T ss_pred HHHHHHHhCCCCEEEEEecEEechHHHHHHhC--CEEEecCCCEecCchh
Confidence 45677788899999999999999999999999 5799999988765443
No 95
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=87.93 E-value=1.4 Score=34.83 Aligned_cols=49 Identities=16% Similarity=0.063 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
..++.|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|-+=...
T Consensus 85 ~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~c--D~ria~~~a~f~~pe~~ 133 (249)
T PRK07938 85 AAFRAVYECAVPVIAAVHGFCLGGGIGLVGNA--DVIVASDDATFGLPEVD 133 (249)
T ss_pred HHHHHHHhCCCCEEEEEcCEEeehHHHHHHhC--CEEEEeCCCEeeCccce
Confidence 35567778899999999999999999999999 57999999988664443
No 96
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=87.86 E-value=1.3 Score=34.95 Aligned_cols=48 Identities=13% Similarity=-0.035 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLP 86 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp 86 (124)
..+..|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+=..
T Consensus 85 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~ 132 (257)
T PRK05862 85 TNWEKVARIRKPVIAAVAGYALGGGCELAMMC--DIIIAADTAKFGQPEI 132 (257)
T ss_pred HHHHHHHhCCCCEEEEEccEEeHHHHHHHHHC--CEEEEeCCCEEeCchh
Confidence 35667788899999999999999999999999 5799998888776443
No 97
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=87.70 E-value=1.4 Score=35.62 Aligned_cols=48 Identities=8% Similarity=-0.132 Sum_probs=40.5
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
++..|+.++.||.+.+-|.|.+.|.-|.+++ +-|++.++++|.+=...
T Consensus 110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalac--D~ria~e~a~f~~pe~~ 157 (288)
T PRK08290 110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVC--DLIVASDDAFFSDPVVR 157 (288)
T ss_pred HHHHHHhCCCCEEEEECCEeeHHHHHHHHhC--CEEEeeCCCEecCcccc
Confidence 4456778899999999999999999999999 57999999988754433
No 98
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=87.61 E-value=1.2 Score=35.89 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=41.1
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
+++.|..++.||...+-|.|.+.|..|.+++ +.|++.++++|-+-...
T Consensus 99 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~ 146 (278)
T PLN03214 99 FLVRLLRSRLATVCAIRGACPAGGCAVSLCC--DYRLQTTEGTMGLNEVA 146 (278)
T ss_pred HHHHHHcCCCCEEEEEcCcccchHHHHHHhC--CEEEecCCCEecCcHHH
Confidence 4566778889999999999999999999999 67999999988775444
No 99
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=87.46 E-value=2 Score=38.51 Aligned_cols=67 Identities=19% Similarity=0.138 Sum_probs=49.0
Q ss_pred CCCCCEEEEEcC-CCCCCCCCCccchHhhHHHHHHHHhhcC---CCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEE
Q 033232 7 NASKPIYLYINS-SGTQNEKKESVGAETDAYAIADAMAYCK---SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK 82 (124)
Q Consensus 7 ~~~~~I~lyINS-pG~~~~~~~~~G~v~~g~aIyd~m~~~~---~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iM 82 (124)
+.-+-|.|.+|+ || |.+...-.|+++|+..+ .||..+.... +|.+=+|.+++ ++-++.|.+.+.
T Consensus 92 ~~IkgIvL~i~~~~g---------~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~A--D~I~~~p~G~v~ 159 (584)
T TIGR00705 92 RRIEGLVFDLSNFSG---------WDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFA--DEIILNPMGSVD 159 (584)
T ss_pred CCceEEEEEccCCCC---------CCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhC--CEEEECCCceEE
Confidence 445678999996 56 77777778999988554 6888887654 45555555555 578999999997
Q ss_pred Eec
Q 033232 83 LYL 85 (124)
Q Consensus 83 iHq 85 (124)
++=
T Consensus 160 ~~G 162 (584)
T TIGR00705 160 LHG 162 (584)
T ss_pred eec
Confidence 754
No 100
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=87.41 E-value=1.6 Score=34.39 Aligned_cols=47 Identities=9% Similarity=-0.089 Sum_probs=40.2
Q ss_pred HHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 41 AMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 41 ~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
.|+.++.||.+.+-|.|.+.|..|++++ +.|++.++++|-+.....|
T Consensus 87 ~l~~~~kPvIAav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G 133 (255)
T PRK06563 87 VGRRLSKPLVVAVQGYCLTLGIELMLAA--DIVVAADNTRFAQLEVQRG 133 (255)
T ss_pred HHhcCCCCEEEEEcCeeecHHHHHHHhC--CEEEecCCCEEeChhhhcC
Confidence 4677889999999999999999999999 6899999999877655433
No 101
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=87.32 E-value=1.2 Score=37.11 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLP 86 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp 86 (124)
.++..|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|.+=..
T Consensus 91 ~~~~~i~~~~kPvIAaVnG~a~GgG~~Lalac--D~ria~~~a~f~~pe~ 138 (342)
T PRK05617 91 RLNALIARYPKPYIALMDGIVMGGGVGISAHG--SHRIVTERTKMAMPET 138 (342)
T ss_pred HHHHHHHhCCCCEEEEEcCEEEccHhHHhhhC--CEEEEcCCCEeeCCcc
Confidence 35567788899999999999999999999999 5799999888876443
No 102
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=87.15 E-value=2.3 Score=34.04 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=42.2
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV 88 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~ 88 (124)
+++.|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|-+=.+..
T Consensus 99 ~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~ 147 (273)
T PRK07396 99 LQRLIRTCPKPVIAMVAGYAIGGGHVLHLVC--DLTIAADNAIFGQTGPKV 147 (273)
T ss_pred HHHHHHhCCCCEEEEECCEEehHHHHHHHhC--CEEEeeCCcEEecccccc
Confidence 5667788899999999999999999999999 689999999988755543
No 103
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=86.98 E-value=1.3 Score=35.25 Aligned_cols=47 Identities=19% Similarity=0.055 Sum_probs=39.9
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEec
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHq 85 (124)
.++..|+.++.||.+.+-|.|.+.|.-|.+++ +-|++.++++|.+=.
T Consensus 92 ~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe 138 (265)
T PRK05674 92 ELMYNLYRLKIPTLAVVQGAAFGGALGLISCC--DMAIGADDAQFCLSE 138 (265)
T ss_pred HHHHHHHcCCCCEEEEEcCEEEechhhHhhhc--CEEEEeCCCEEeCcc
Confidence 35556778889999999999999999999999 579999999887733
No 104
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=86.60 E-value=0.7 Score=38.85 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCCCCCCCCccchH--hhHHHHHHHHh---hcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 9 SKPIYLYINSSGTQNEKKESVGAE--TDAYAIADAMA---YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~~~~~~G~v--~~g~aIyd~m~---~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
.-||..+|++||---- +|-+ -.+-+|--.+. ..+.||.+++.|--.|-+++-+..|+ +.+|+.||.+..
T Consensus 150 ~lPiitfIDT~GAypG----~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad--~V~mle~s~ySV 223 (317)
T COG0825 150 GLPIITFIDTPGAYPG----IGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVAD--RVLMLENSTYSV 223 (317)
T ss_pred CCCEEEEecCCCCCCC----cchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHH--HHHHHHhceeee
Confidence 4689999999991100 1222 22345655544 66789999999999999999999994 578999999999
Q ss_pred ecCC
Q 033232 84 YLPV 87 (124)
Q Consensus 84 Hqp~ 87 (124)
=.|.
T Consensus 224 isPE 227 (317)
T COG0825 224 ISPE 227 (317)
T ss_pred cChh
Confidence 9987
No 105
>PLN02921 naphthoate synthase
Probab=86.48 E-value=2.1 Score=35.61 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=43.8
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGR 90 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~~ 90 (124)
++..|+.++.||...+-|.|.+.|..|.+++ +-|++.++++|-+-.+..|.
T Consensus 153 l~~~l~~~~kPvIAaVnG~a~GGG~~Lalac--D~riA~~~A~f~~pe~~~Gl 203 (327)
T PLN02921 153 LQIQIRRLPKPVIAMVAGYAVGGGHILHMVC--DLTIAADNAVFGQTGPKVGS 203 (327)
T ss_pred HHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccCC
Confidence 4567788899999999999999999999999 68999999999887666443
No 106
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=85.99 E-value=1.7 Score=34.66 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=37.9
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
++..|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|-+
T Consensus 98 ~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~ 141 (268)
T PRK07327 98 LVYNVINCDKPIVSAIHGPAVGAGLVAALLA--DISIAAKDARIID 141 (268)
T ss_pred HHHHHHcCCCCEEEEEcCeeeehhhHHHHhC--CEEEecCCCEEeC
Confidence 4455667788999999999999999999999 5799999988865
No 107
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=85.92 E-value=2.4 Score=34.41 Aligned_cols=45 Identities=2% Similarity=-0.197 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEE
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMi 83 (124)
.++..|..++.||...+-|.|.+.|.-|++++ +-|++.++++|-+
T Consensus 118 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~~ias~~a~f~~ 162 (302)
T PRK08272 118 RGFMSLWHAHKPTVAKVHGYCVAGGTDIALHC--DQVIAADDAKIGY 162 (302)
T ss_pred HHHHHHHhCCCCEEEEEccEeehhhHHHHHhC--CEEEEeCCCEecC
Confidence 35667788899999999999999999999999 5799999987744
No 108
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=85.48 E-value=3.8 Score=32.40 Aligned_cols=46 Identities=20% Similarity=0.088 Sum_probs=38.2
Q ss_pred HhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 42 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 42 m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
+..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+-....|
T Consensus 90 ~~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G 135 (259)
T PRK06494 90 RFDLDKPIIAAVNGVAMGGGFELALAC--DLIVAAENATFALPEPRVG 135 (259)
T ss_pred HhcCCCCEEEEECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccC
Confidence 346678999999999999999999999 5799999998877554433
No 109
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=85.14 E-value=2.6 Score=35.69 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=40.0
Q ss_pred HHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCC
Q 033232 39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV 88 (124)
Q Consensus 39 yd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~ 88 (124)
...|..++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+=....
T Consensus 98 ~~~i~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~i 145 (379)
T PLN02874 98 CYHIHTYKKTQVALVHGLVMGGGAGLMVPM--KFRVVTEKTVFATPEASV 145 (379)
T ss_pred HHHHHhCCCCEEEEecCeEEecHHHHHHhC--CeEEEeCCeEEecccccc
Confidence 345677889999999999999999999999 579999998877655443
No 110
>PRK08788 enoyl-CoA hydratase; Validated
Probab=85.11 E-value=2.8 Score=34.24 Aligned_cols=40 Identities=8% Similarity=-0.190 Sum_probs=34.3
Q ss_pred hcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEec
Q 033232 44 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 44 ~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHq 85 (124)
.++.||...+-|.|.+.|.-|.+++ +-|++.++++|-+=.
T Consensus 119 ~~pkPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe 158 (287)
T PRK08788 119 GAGAISIALVQGDALGGGFEAALSH--HTIIAERGAKMGFPE 158 (287)
T ss_pred CCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEeeCch
Confidence 4677899999999999999999999 579999998766533
No 111
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=84.70 E-value=4 Score=34.91 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=43.6
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
.+++.|..++.||...+-|.|.+.|.-|.+++ +.|++.++++|-+-.+..|
T Consensus 115 ~l~~~i~~~pKPVIAAVnG~AiGGGleLALaC--DlrIAse~A~Fg~PE~rlG 165 (360)
T TIGR03200 115 DMVSAILGCDKPVICRVNGMRIGGGQEIGMAA--DFTIAQDLANFGQAGPKHG 165 (360)
T ss_pred HHHHHHHhCCCCEEEEECCEeeeHHHHHHHhC--CEEEEcCCCEEeCchhccC
Confidence 56677888899999999999999999999999 5799999998887555543
No 112
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=84.60 E-value=2.5 Score=35.99 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=37.2
Q ss_pred HHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEec
Q 033232 40 DAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 40 d~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHq 85 (124)
..|..++.||.+.+.|.|.+.|.-|.+++ +.|++.++++|-.=.
T Consensus 99 ~~i~~~pKPvIa~v~G~a~GGG~~Lal~~--D~rvate~a~f~mPE 142 (381)
T PLN02988 99 YVMATYSKAQVSILNGIVMGGGAGVSVHG--RFRIATENTVFAMPE 142 (381)
T ss_pred HHHHHCCCCEEEEecCeEeehhhHHhhcC--CeEEEcCCcEEeChh
Confidence 35678889999999999999999999999 578888888766433
No 113
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=84.36 E-value=2.6 Score=34.37 Aligned_cols=48 Identities=10% Similarity=-0.104 Sum_probs=41.5
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
.+..|..++.||...+-|.|.+.|.-|.+++ +-|++.++++|-+-...
T Consensus 104 ~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~A~f~~pe~~ 151 (298)
T PRK12478 104 KFMAIWRASKPVIAQVHGWCVGGASDYALCA--DIVIASDDAVIGTPYSR 151 (298)
T ss_pred HHHHHHhCCCCEEEEEccEEehhHHHHHHHC--CEEEEcCCcEEeccccc
Confidence 4556778899999999999999999999999 57999999988875554
No 114
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=82.54 E-value=3.3 Score=35.73 Aligned_cols=46 Identities=11% Similarity=-0.009 Sum_probs=36.9
Q ss_pred HHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCC
Q 033232 41 AMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV 88 (124)
Q Consensus 41 ~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~ 88 (124)
.|..++.|+...+.|.|++.|.-|.+++ +.|++.++++|-+=...+
T Consensus 133 ~i~~~pKPvIA~v~G~amGGG~gLal~~--D~rVate~a~famPE~~i 178 (407)
T PLN02851 133 LQGTYLKPNVAIMDGITMGCGAGISIPG--MFRVVTDKTVFAHPEVQM 178 (407)
T ss_pred HHHhCCCCEEEEEcCEEeeHHHHHHHhC--CEEEEeCCceEecchhcc
Confidence 4557788999999999999999999998 567888777766654443
No 115
>PRK08321 naphthoate synthase; Validated
Probab=81.56 E-value=3.7 Score=33.45 Aligned_cols=48 Identities=17% Similarity=0.043 Sum_probs=39.5
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeec-cCcEEEEecCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQ-PNSSTKLYLPV 87 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~-p~a~iMiHqp~ 87 (124)
+.+.|..++.||.+.+-|.|.+.|.-|++++ +-|++. ++++|-+=...
T Consensus 127 ~~~~l~~~pkP~IAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~ 175 (302)
T PRK08321 127 VQRLIRFMPKVVIAVVPGWAAGGGHSLHVVC--DLTLASREHARFKQTDAD 175 (302)
T ss_pred HHHHHHcCCCCEEEEEcCeeehHHHHHHHhC--CEEEEecCCCEEECCccc
Confidence 4456778889999999999999999999999 579998 68888764433
No 116
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=81.16 E-value=4.6 Score=34.72 Aligned_cols=47 Identities=9% Similarity=0.007 Sum_probs=39.2
Q ss_pred HHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 39 yd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
...|..++.|+...+.|.|.+.|.-|.++| +.|++.++++|-.=...
T Consensus 126 ~~~i~~~pkPvIA~v~G~a~GGG~~Lal~c--D~rvate~a~fa~PE~~ 172 (401)
T PLN02157 126 IYLLGTYLKPHVAILNGVTMGGGTGVSIPG--TFRVATDRTIFATPETI 172 (401)
T ss_pred HHHHHhCCCCEEEEEeCeEeehhHHHHHhC--CEEEEeCCCEEEChhhh
Confidence 345778889999999999999999999999 57899888887664444
No 117
>PRK10949 protease 4; Provisional
Probab=81.07 E-value=3.5 Score=37.39 Aligned_cols=69 Identities=25% Similarity=0.242 Sum_probs=48.1
Q ss_pred CCCCCEEEEEcCCCCCCCCCCccchHhhH-HHHHHHHhhcC---CCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEE
Q 033232 7 NASKPIYLYINSSGTQNEKKESVGAETDA-YAIADAMAYCK---SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK 82 (124)
Q Consensus 7 ~~~~~I~lyINSpG~~~~~~~~~G~v~~g-~aIyd~m~~~~---~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iM 82 (124)
+.-+-|.|.+||+| |...+. -.|.++|+..+ .||..+ |-.++.+...+++.. ++-++.|.+.+.
T Consensus 111 ~rIkgivL~i~s~g---------G~~~a~~~eI~~ai~~fk~sGKpVvA~--~~~~~s~~YyLASaA-D~I~l~P~G~v~ 178 (618)
T PRK10949 111 RNITGIVLDLKNFA---------GADQPSMQYIGKALREFRDSGKPVYAV--GDSYSQGQYYLASFA-NKIYLSPQGVVD 178 (618)
T ss_pred CCceEEEEEeCCCC---------CccHHHHHHHHHHHHHHHHhCCeEEEE--ecCccchhhhhhhhC-CEEEECCCceEE
Confidence 44567899999998 765544 57888887654 577775 444455666555543 678999999988
Q ss_pred EecCC
Q 033232 83 LYLPV 87 (124)
Q Consensus 83 iHqp~ 87 (124)
++=..
T Consensus 179 ~~G~~ 183 (618)
T PRK10949 179 LHGFA 183 (618)
T ss_pred Eeeee
Confidence 77543
No 118
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=80.90 E-value=2.7 Score=33.22 Aligned_cols=44 Identities=9% Similarity=-0.077 Sum_probs=37.6
Q ss_pred HhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 42 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 42 m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
++.++.||.+.+-|.|.+.|.-|.+++ +-|++.++++|-+-...
T Consensus 96 ~~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~ 139 (263)
T PRK07799 96 GRRLTKPLIAAVEGPAIAGGTEILQGT--DIRVAGESAKFGISEAK 139 (263)
T ss_pred HhcCCCCEEEEECCeEeccHHHHHHhC--CEEEecCCCEecCcccc
Confidence 456788999999999999999999999 57999999987765444
No 119
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=80.87 E-value=6.1 Score=32.98 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCCCCCCCCccchHhhHH-------HHHHHHhhcC--CCeEEEEcce--eccHHHHHHhcCCCCceeeccC
Q 033232 10 KPIYLYINSSGTQNEKKESVGAETDAY-------AIADAMAYCK--SKVYTVNCGM--AYGQAAMLLSVGAKGYRGLQPN 78 (124)
Q Consensus 10 ~~I~lyINSpG~~~~~~~~~G~v~~g~-------aIyd~m~~~~--~~V~Tv~~G~--AaS~aslil~aG~kg~R~~~p~ 78 (124)
-|+.+.+.|.| +-..+|. -|+..+...+ .|+.+++.|- |++-++.+.+.+ +..+|.|+
T Consensus 109 ~PvV~l~dSGG---------aRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc~GG~a~~a~l~--D~iIm~~~ 177 (301)
T PRK07189 109 TAVLLLFETGG---------VRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGCFGGMGIAAALC--SYLIVSEE 177 (301)
T ss_pred CCEEEEecCCC---------cCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCcHHHHHHHhcC--CEEEEECC
Confidence 68999999999 5555444 2333333233 6999999998 788888887777 57899999
Q ss_pred cEEEEecCC
Q 033232 79 SSTKLYLPV 87 (124)
Q Consensus 79 a~iMiHqp~ 87 (124)
+++.+--|.
T Consensus 178 a~iglaGP~ 186 (301)
T PRK07189 178 GRLGLSGPE 186 (301)
T ss_pred cEEeccCHH
Confidence 999887663
No 120
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=80.83 E-value=7.3 Score=32.07 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=48.6
Q ss_pred CCEEEEEcCCCCCCCCCCccchHhhHHH-------HHHHHhhcC--CCeEEEEcce--eccHHHHHHhcCCCCceeeccC
Q 033232 10 KPIYLYINSSGTQNEKKESVGAETDAYA-------IADAMAYCK--SKVYTVNCGM--AYGQAAMLLSVGAKGYRGLQPN 78 (124)
Q Consensus 10 ~~I~lyINSpG~~~~~~~~~G~v~~g~a-------Iyd~m~~~~--~~V~Tv~~G~--AaS~aslil~aG~kg~R~~~p~ 78 (124)
-|+.+.+.|+| +-..+|.. |+..+...+ .|+.+++.|- |++-++.+.+.+ +..+|.|.
T Consensus 100 ~PvV~l~dSgG---------aRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc~GG~a~~a~l~--D~vim~~~ 168 (274)
T TIGR03133 100 TAVVLLLDTGG---------VRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLC--SYLIMTEE 168 (274)
T ss_pred CCEEEEEcCCC---------cChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCcchHHHHHHhcC--CEEEEeCC
Confidence 48999999999 66666542 232222222 6999999999 678888777777 57899999
Q ss_pred cEEEEecC
Q 033232 79 SSTKLYLP 86 (124)
Q Consensus 79 a~iMiHqp 86 (124)
+++.+--|
T Consensus 169 a~i~~aGP 176 (274)
T TIGR03133 169 GRLGLSGP 176 (274)
T ss_pred cEEeccCH
Confidence 99988766
No 121
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=77.81 E-value=5.3 Score=31.41 Aligned_cols=48 Identities=8% Similarity=-0.028 Sum_probs=37.9
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeecc-CcEEEEecCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP-NSSTKLYLPV 87 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p-~a~iMiHqp~ 87 (124)
++..|..++.||...+-|.|.+.|..|.+++ +.|++.+ .++|.+-...
T Consensus 86 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~ 134 (239)
T PLN02267 86 LVADLISLPMPTIAAVTGHASAAGFILALSH--DYVLMRKDRGVLYMSEVD 134 (239)
T ss_pred HHHHHhcCCCCEEEEECCcchHHHHHHHHHC--CEEEecCCCCeEeccccc
Confidence 5566778889999999999999999999999 5788874 4566554433
No 122
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=76.57 E-value=4.9 Score=31.63 Aligned_cols=40 Identities=10% Similarity=-0.112 Sum_probs=34.9
Q ss_pred hcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEec
Q 033232 44 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 44 ~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHq 85 (124)
.++.||...+-|.|.+.|.-|.+++ +-|++.++++|-+=.
T Consensus 89 ~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe 128 (254)
T PRK08252 89 PPRKPLIAAVEGYALAGGFELALAC--DLIVAARDAKFGLPE 128 (254)
T ss_pred cCCCCEEEEECCEEehHHHHHHHhC--CEEEEeCCCEEeCch
Confidence 5678999999999999999999999 579999999886543
No 123
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=75.39 E-value=8.5 Score=35.30 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 35 g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
+..+++.|..++.||...+-|.|.+.|.-|.+++ +.|++.++++|-+=...
T Consensus 91 ~~~~~~~i~~~pkPvIAai~G~alGGGleLalac--D~ria~~~a~fglPEv~ 141 (714)
T TIGR02437 91 ANSIFNKLEDLPVPTVAAINGIALGGGCECVLAT--DFRIADDTAKIGLPETK 141 (714)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhC--CEEEEeCCCEEecchhh
Confidence 3457788888999999999999999999999999 68999999988775544
No 124
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=75.25 E-value=8.5 Score=35.15 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=39.4
Q ss_pred HHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecC
Q 033232 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLP 86 (124)
Q Consensus 36 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp 86 (124)
..++..|..++.||.+.+-|.|.+.|.-|.+++ +.|++.+++...+..|
T Consensus 86 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLac--D~ria~~~~~a~fg~p 134 (699)
T TIGR02440 86 QVLFAELEALPIPVVAAIHGACLGGGLELALAC--HSRVCSDDDKTVLGLP 134 (699)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEcCCCCcEEech
Confidence 346677888999999999999999999999999 6799988743333333
No 125
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=74.80 E-value=5.4 Score=31.54 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=35.0
Q ss_pred hcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEec
Q 033232 44 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 44 ~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHq 85 (124)
.++.||.+.+-|.|.+.|.-|.+++ +.|++.++++|-+-.
T Consensus 91 ~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe 130 (254)
T PRK08259 91 RLSKPVIAAVSGYAVAGGLELALWC--DLRVAEEDAVFGVFC 130 (254)
T ss_pred cCCCCEEEEECCEEEhHHHHHHHhC--CEEEecCCCEecCcc
Confidence 5678999999999999999999999 689999999876533
No 126
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=73.93 E-value=9.1 Score=35.04 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=41.1
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCC
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~ 87 (124)
+++.|..++.||...+-|.|.+.|.-|.+++ +.|++.++++|-+=...
T Consensus 94 ~~~~i~~~~kPvIAav~G~a~GgG~~LAlac--D~ria~~~a~f~~pe~~ 141 (715)
T PRK11730 94 IFNRLEDLPVPTVAAINGYALGGGCECVLAT--DYRVASPDARIGLPETK 141 (715)
T ss_pred HHHHHHcCCCCEEEEECCEeehHHHHHHHhC--CEEEEcCCCEEeCchhh
Confidence 5667778899999999999999999999999 67999999888765443
No 127
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=72.23 E-value=14 Score=33.21 Aligned_cols=40 Identities=18% Similarity=0.026 Sum_probs=34.7
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCc
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS 79 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a 79 (124)
+.+.|+.++.||...+-|.|.+.|.-|.+++ +-|++.+++
T Consensus 111 i~~~i~~~pkPvIAAVnG~a~GGG~~LALac--D~rvAs~~a 150 (546)
T TIGR03222 111 IEDSSRHSGLKFLAAVNGTCAGGGYELALAC--DEIMLVDDR 150 (546)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEEecCC
Confidence 5566778899999999999999999999999 578888863
No 128
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.35 E-value=12 Score=34.17 Aligned_cols=48 Identities=15% Similarity=0.030 Sum_probs=39.9
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCc--EEEEecC
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS--STKLYLP 86 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a--~iMiHqp 86 (124)
.+++.|..++.||...+-|.|.+.|.-|.+++ +.|++.+++ +|-+-..
T Consensus 92 ~~~~~i~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~a~fg~pe~ 141 (708)
T PRK11154 92 QLFAEIEALPIPVVAAIHGACLGGGLELALAC--HYRVCTDDPKTVLGLPEV 141 (708)
T ss_pred HHHHHHHhCCCCEEEEECCeeechHHHHHHhC--CEEEEeCCCCceEeCccc
Confidence 36778888999999999999999999999999 679999886 4544443
No 129
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=69.25 E-value=5.8 Score=33.14 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=45.1
Q ss_pred HHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCCC
Q 033232 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVG 89 (124)
Q Consensus 36 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~~ 89 (124)
+.-++.+..++.||...+.|+|.+-|.-|.+.+ +=|+|.|+|.|+.-++..|
T Consensus 117 ~~~~~~~~~~~KPvIaainG~AlgGG~ELalmC--Dirva~~~Akfg~~~~~~G 168 (290)
T KOG1680|consen 117 LRVWDLVSRLKKPVIAAINGFALGGGLELALMC--DIRVAGEGAKFGFFEIRMG 168 (290)
T ss_pred cchhhhhhhcccceeEeeeceeeccchhhhhhc--ceEeccCCCeecccccccC
Confidence 456777778999999999999999999999999 4699999999998887653
No 130
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=68.42 E-value=21 Score=28.92 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=50.1
Q ss_pred CCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHH----------hhcCCCeEEEEcceeccHHHHHHhcCCCCceee
Q 033232 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAM----------AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGL 75 (124)
Q Consensus 6 ~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m----------~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~ 75 (124)
..+++||-+.|.+|| ...|.-+|.+.|+-+| |.-..||.+++.|.|+|-|-+-.. --.++=++
T Consensus 61 ~~~krpIv~lVD~~s------Qa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~G-lqA~rl~A 133 (234)
T PF06833_consen 61 SGPKRPIVALVDVPS------QAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHG-LQANRLIA 133 (234)
T ss_pred cCCCCCEEEEEeCCc------cccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHH-HHhcchhc
Confidence 346899999999998 2336777777665554 455679999999999997755442 11135578
Q ss_pred ccCcEEEEec
Q 033232 76 QPNSSTKLYL 85 (124)
Q Consensus 76 ~p~a~iMiHq 85 (124)
+| -.|+|-
T Consensus 134 L~--ga~i~v 141 (234)
T PF06833_consen 134 LP--GAMIHV 141 (234)
T ss_pred CC--CCeeec
Confidence 88 566764
No 131
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=68.16 E-value=12 Score=33.46 Aligned_cols=44 Identities=20% Similarity=0.077 Sum_probs=36.7
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccC--cEEEE
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN--SSTKL 83 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~--a~iMi 83 (124)
+.+.|+.++.||...+-|.|.+.|..|.+++ +.|++.++ ++|-+
T Consensus 115 l~~~l~~~pkPvIAAVnG~a~GGG~~LALac--D~rIas~~~~a~fg~ 160 (550)
T PRK08184 115 IEDSSRHSGLKFIAAVNGTCAGGGYELALAC--DEIVLVDDRSSAVSL 160 (550)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEEecCCCcEEEc
Confidence 4566778899999999999999999999999 57888887 45433
No 132
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=66.50 E-value=27 Score=28.81 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCCCCCCCCCccchHhhHHHHH-------H---HHhhcCCCeEEEEcceeccHHHHHHh-cCCCCceeecc
Q 033232 9 SKPIYLYINSSGTQNEKKESVGAETDAYAIA-------D---AMAYCKSKVYTVNCGMAYGQAAMLLS-VGAKGYRGLQP 77 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~~~~~~G~v~~g~aIy-------d---~m~~~~~~V~Tv~~G~AaS~aslil~-aG~kg~R~~~p 77 (124)
.-|+.+...|+| .-..||...+ . .++.-.-|..++..|-+.+.++..++ .| +-.++-|
T Consensus 155 ~lPlV~l~dSgG---------aRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~--D~iia~p 223 (285)
T TIGR00515 155 NCPLIIFSASGG---------ARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLG--DLNIAEP 223 (285)
T ss_pred CCCEEEEEcCCC---------cccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCC--CEEEEEC
Confidence 458899999999 4445544222 1 22333568899999999888777664 55 5678899
Q ss_pred CcEEEEecC
Q 033232 78 NSSTKLYLP 86 (124)
Q Consensus 78 ~a~iMiHqp 86 (124)
+|++.+--|
T Consensus 224 ~A~ig~aGp 232 (285)
T TIGR00515 224 KALIGFAGP 232 (285)
T ss_pred CeEEEcCCH
Confidence 998877555
No 133
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=65.43 E-value=19 Score=33.29 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=37.9
Q ss_pred HHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcE
Q 033232 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 36 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~ 80 (124)
..+++.|..++.||...+-|.|.+.|.-|..++ +.|++.+++.
T Consensus 98 ~~l~~~i~~~~kPvIAav~G~a~GgG~eLALac--D~ria~~~a~ 140 (737)
T TIGR02441 98 QEMFERIEKSQKPIVAAISGSCLGGGLELALAC--HYRIATKDRK 140 (737)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEcCCCC
Confidence 356778888999999999999999999999999 6899999864
No 134
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=64.08 E-value=41 Score=27.83 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCCCCCCCCccchHhhHHH-------HHHH---HhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccC
Q 033232 9 SKPIYLYINSSGTQNEKKESVGAETDAYA-------IADA---MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN 78 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~~~~~~G~v~~g~a-------Iyd~---m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~ 78 (124)
.-|+.....|+| ....+|.. ++.+ +....-|..++..|-+.+.++..++... +-.++-|+
T Consensus 156 ~lPlV~l~dsgG---------armqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~-D~iia~p~ 225 (292)
T PRK05654 156 KCPLVIFSASGG---------ARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLG-DIIIAEPK 225 (292)
T ss_pred CCCEEEEEcCCC---------cchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcC-CEEEEecC
Confidence 458888889999 55555542 2222 3333568889999999888777665522 46788899
Q ss_pred cEEEEecCC
Q 033232 79 SSTKLYLPV 87 (124)
Q Consensus 79 a~iMiHqp~ 87 (124)
+++.+=-|.
T Consensus 226 A~ig~aGpr 234 (292)
T PRK05654 226 ALIGFAGPR 234 (292)
T ss_pred cEEEecCHH
Confidence 988776553
No 135
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=61.36 E-value=18 Score=32.45 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=42.6
Q ss_pred HHHHHhhcCCCeEEEE-cceeccHH-HHHHhcCCCCceee-------ccCcEEEEecCCCC
Q 033232 38 IADAMAYCKSKVYTVN-CGMAYGQA-AMLLSVGAKGYRGL-------QPNSSTKLYLPVVG 89 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~-~G~AaS~a-slil~aG~kg~R~~-------~p~a~iMiHqp~~~ 89 (124)
++..|..++.||...+ -|.|.+.| .-|.+++ +-|++ .++++|.+-....|
T Consensus 357 ~~~~l~~~~kpviAav~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~~e~~lG 415 (546)
T TIGR03222 357 TLARLDVSSRSLFALIEPGSCFAGTLAELAFAA--DRSYMLAFPDNNDPEPAITLSELNFG 415 (546)
T ss_pred HHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhC--ceeeecCCCCCCCCCCEEeCCccccc
Confidence 6778888899999999 79999999 9999999 57999 89999887666544
No 136
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=55.86 E-value=20 Score=32.18 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=40.0
Q ss_pred HHHHHhhcCCCeEEEEc-ceeccHH-HHHHhcCCCCceeec-------cCcEEEEecCCCC
Q 033232 38 IADAMAYCKSKVYTVNC-GMAYGQA-AMLLSVGAKGYRGLQ-------PNSSTKLYLPVVG 89 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~-G~AaS~a-slil~aG~kg~R~~~-------p~a~iMiHqp~~~ 89 (124)
++..|..++.||...+- |.|.+.| .-|.+++ +.|++. |+++|.+-....|
T Consensus 361 ~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~pe~~~G 419 (550)
T PRK08184 361 TLKRLDVTSRSLFALIEPGSCFAGTLAELALAA--DRSYMLALPDDNDPAPAITLSALNFG 419 (550)
T ss_pred HHHHHHhCCCCEEEEECCCceehhHHHHHHHHC--ChhhhcCCCCCCCCCCEEECcccccc
Confidence 45677778889999996 9999999 8888888 578998 8888877665543
No 137
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=44.26 E-value=26 Score=24.19 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=20.1
Q ss_pred CCCCEEEEEcC---CCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceecc
Q 033232 8 ASKPIYLYINS---SGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYG 59 (124)
Q Consensus 8 ~~~~I~lyINS---pG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS 59 (124)
+++.+++|||+ |. --|.||++.+.++ .-..-|.-+|...|+|
T Consensus 43 ~~~slFlYin~sFaPs----pDe~vg~L~~~f~------~~~~Liv~Ys~t~A~G 87 (87)
T PF04110_consen 43 PSDSLFLYINNSFAPS----PDETVGDLYRCFG------TNGELIVSYSKTPAWG 87 (87)
T ss_dssp --SS-EEEEEEEE-------TTSBHHHHHHHH-------BTTBEEEEEESSS---
T ss_pred cCCeEEEEEcCccCCC----chhHHHHHHHHhC------CCCEEEEEEecccccC
Confidence 46899999987 44 2356666665554 2223345566665543
No 138
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=39.58 E-value=15 Score=30.83 Aligned_cols=47 Identities=13% Similarity=0.006 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhhcCCCeEEEE-------c----ceeccHHHHHHhcCCCCceeeccCcE
Q 033232 33 TDAYAIADAMAYCKSKVYTVN-------C----GMAYGQAAMLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 33 ~~g~aIyd~m~~~~~~V~Tv~-------~----G~AaS~aslil~aG~kg~R~~~p~a~ 80 (124)
-++++|||+.|.+...+..-. - =+...+.++||++|. ++|+-.+-+.
T Consensus 123 ~a~ltiydm~k~~~~~~~i~~~~l~~k~gg~s~~~~~~i~~IILAGGk-SsRMG~dKaL 180 (346)
T PRK14500 123 VAALTIYDMCKSISPHIIIKETRLIEKSGGKADLSQTPLYGLVLTGGK-SRRMGKDKAL 180 (346)
T ss_pred HHHHHHHHHHhccCCCcEEeeEEEEEecCCcCCCCCCCceEEEEeccc-cccCCCCccc
Confidence 345699999998876433211 1 123467788899885 6776443333
No 139
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=38.91 E-value=38 Score=23.73 Aligned_cols=47 Identities=13% Similarity=-0.019 Sum_probs=17.3
Q ss_pred hcCCCCceeeccCcEEEEecCCCCCCCcCHHHHHHHHHHHHHHHhHc
Q 033232 66 SVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKVFPTFLLLSFL 112 (124)
Q Consensus 66 ~aG~kg~R~~~p~a~iMiHqp~~~~~~G~a~di~~~a~el~~~~~~l 112 (124)
..+++..--+-|.+.+-.-||.+....=+.+||++|.+.+.+.|++|
T Consensus 46 Q~~~~~~~e~~P~~~~~~~QPLc~~~~VT~eDIr~QE~rVk~aR~RL 92 (96)
T PF14048_consen 46 QTSSKDALEKNPGVGLNPPQPLCKQFVVTEEDIRRQERRVKKARKRL 92 (96)
T ss_dssp -----------------------T-----HHHHHHHHHHHHHHHHHH
T ss_pred CccchhhhccCcccccCCCcccccCCccCHHHHHHHHHHHHHHHHHH
Confidence 34443333455666666678875444456799999999999999987
No 140
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=37.05 E-value=31 Score=31.10 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCCCCC-CCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCce--eeccCcEEEE
Q 033232 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYR--GLQPNSSTKL 83 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~-~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R--~~~p~a~iMi 83 (124)
+=||.+..|.||...- +-|.-|-+--|--+.+++-..+.|..|+..|-+.+.|-..+++..-+-| ++-|++++-.
T Consensus 359 ~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~iaV 436 (526)
T COG4799 359 NIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAV 436 (526)
T ss_pred CCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcceeee
Confidence 3589999999996554 5555577778889999999999999999999999988666654432222 2334554443
No 141
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=36.93 E-value=1.2e+02 Score=26.89 Aligned_cols=68 Identities=16% Similarity=0.076 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCCCCCCCCccchHhhHH-------HHH-HHHh-hcCCCeEEEEcceeccHHHHHHhcCCCCceeeccC-
Q 033232 9 SKPIYLYINSSGTQNEKKESVGAETDAY-------AIA-DAMA-YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN- 78 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~~~~~~G~v~~g~-------aIy-d~m~-~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~- 78 (124)
.-|+..++.|.| +.+.+|. .++ ...+ .-.-|..+++.|-+.+-++...+.+ +..+|.|+
T Consensus 117 ~lPlV~l~dSgG---------arm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~--D~vim~~~~ 185 (512)
T TIGR01117 117 GAPVVGLNDSGG---------ARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAVYSPALT--DFIYMVDNT 185 (512)
T ss_pred CCCEEEEecCCC---------CCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhc--CceEEeccc
Confidence 468888888888 4443332 122 2221 2235889999999999999999888 57899996
Q ss_pred cEEEEecCC
Q 033232 79 SSTKLYLPV 87 (124)
Q Consensus 79 a~iMiHqp~ 87 (124)
+++.+-=|.
T Consensus 186 a~i~~aGP~ 194 (512)
T TIGR01117 186 SQMFITGPQ 194 (512)
T ss_pred eEEEecChH
Confidence 467776553
No 142
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=36.17 E-value=20 Score=29.36 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=31.4
Q ss_pred HHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEE
Q 033232 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (124)
Q Consensus 38 Iyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~i 81 (124)
+.+.||..+.||...+-|.|+-+|+-|.++++ --.+..++.|
T Consensus 117 vmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD--~vVa~k~SkF 158 (287)
T KOG1682|consen 117 VMNDIRNLPVPVIAKVNGYAAAAGCQLVASCD--MVVATKNSKF 158 (287)
T ss_pred HHHHHhcCCCceEEEecchhhhccceEEEeee--EEEEecCccc
Confidence 45667788889999999999999998887763 3344444444
No 143
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=34.36 E-value=1.1e+02 Score=26.74 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCCCCCCCCccc--hHhhHHH-------HHHHHh--hcCCCeEEEEcceeccHHHHHHhcCCCCceeecc
Q 033232 9 SKPIYLYINSSGTQNEKKESVG--AETDAYA-------IADAMA--YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP 77 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~~~~~~G--~v~~g~a-------Iyd~m~--~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p 77 (124)
.-|+..++.|.| + ...+|+. |+..+. +-..|..++..|-+.+.++.+.+.+ +..+|.+
T Consensus 92 ~~P~v~l~dsgG---------a~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~A~~~~~~--d~~i~~~ 160 (493)
T PF01039_consen 92 GLPLVYLVDSGG---------AFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGGAYLAALS--DFVIMVK 160 (493)
T ss_dssp TEEEEEEEEESS---------BCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGGGHHHHHS--SEEEEET
T ss_pred CCCcEEeccccc---------cccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccchhhccccc--CccccCc
Confidence 357777788999 5 4444442 222222 1156899999999999999888888 4678888
Q ss_pred C-cEEEEecC
Q 033232 78 N-SSTKLYLP 86 (124)
Q Consensus 78 ~-a~iMiHqp 86 (124)
. +++.+.-|
T Consensus 161 ~~a~i~l~GP 170 (493)
T PF01039_consen 161 GTARIFLAGP 170 (493)
T ss_dssp TTCEEESSTH
T ss_pred cceEEEeccc
Confidence 7 98888665
No 144
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=33.97 E-value=87 Score=25.01 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=35.1
Q ss_pred EEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcC
Q 033232 12 IYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG 68 (124)
Q Consensus 12 I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG 68 (124)
|-+++..+|- |.++-+++|.+.|+. ..+|.-++.|. ...++-..|
T Consensus 2 il~~~~g~G~--------GH~~r~~ala~~L~~-g~ev~~~~~~~---~~~~~~~~~ 46 (321)
T TIGR00661 2 ILYSVCGEGF--------GHTTRSVAIGEALKN-DYEVSYIASGR---SKNYISKYG 46 (321)
T ss_pred EEEEEeccCc--------cHHHHHHHHHHHHhC-CCeEEEEEcCC---HHHhhhhhc
Confidence 6788899994 999999999999998 88888777666 444443444
No 145
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=32.25 E-value=72 Score=26.58 Aligned_cols=35 Identities=6% Similarity=0.065 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcc
Q 033232 13 YLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCG 55 (124)
Q Consensus 13 ~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G 55 (124)
.|+|...|++ |+++.| ++.+.|+...++|.-++.|
T Consensus 7 ki~i~aGgts-------Ghi~pa-al~~~l~~~~~~~~~~g~g 41 (385)
T TIGR00215 7 TIALVAGEAS-------GDILGA-GLRQQLKEHYPNARFIGVA 41 (385)
T ss_pred eEEEEeCCcc-------HHHHHH-HHHHHHHhcCCCcEEEEEc
Confidence 4567776655 999999 9999999877777766655
No 146
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=32.21 E-value=2.1e+02 Score=26.02 Aligned_cols=76 Identities=13% Similarity=0.043 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCCCCCC-CCCccchHhhHHHHHHHH-h--hcCCCeEEEEcceeccHHHHHHhcCCCCceeec-cCcEEEE
Q 033232 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAM-A--YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQ-PNSSTKL 83 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~-~~~~~G~v~~g~aIyd~m-~--~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~-p~a~iMi 83 (124)
.-||...+.|+|.--. .-|.++.....-.|+..+ + ...-|..++++|-+++.++.+.+.. +..+|. +++++.+
T Consensus 164 ~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~--D~vim~~~~a~i~~ 241 (569)
T PLN02820 164 RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPAMA--DESVIVKGNGTIFL 241 (569)
T ss_pred CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHHHHhC--CceEEecCCcEEEe
Confidence 4688889999992111 112221111111344442 2 2346999999999999999888777 455665 5788887
Q ss_pred ecC
Q 033232 84 YLP 86 (124)
Q Consensus 84 Hqp 86 (124)
--|
T Consensus 242 aGP 244 (569)
T PLN02820 242 AGP 244 (569)
T ss_pred cCH
Confidence 666
No 147
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=30.44 E-value=14 Score=24.55 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEc
Q 033232 10 KPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNC 54 (124)
Q Consensus 10 ~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~ 54 (124)
++|+|+||--= =.+.+|.+|.++++...-+|.+.|.
T Consensus 2 ~~v~i~idG~~---------v~~~~G~til~al~~~gi~ip~~c~ 37 (82)
T PF13510_consen 2 KMVTITIDGKP---------VEVPPGETILEALLAAGIDIPRLCY 37 (82)
T ss_dssp EEEEEEETTEE---------EEEEET-BHHHHHHHTT--B-EETT
T ss_pred CEEEEEECCEE---------EEEcCCCHHHHHHHHCCCeEEEeee
Confidence 57888888655 5678899999999999888877775
No 148
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=29.11 E-value=1.2e+02 Score=23.61 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=31.8
Q ss_pred CEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEccee
Q 033232 11 PIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMA 57 (124)
Q Consensus 11 ~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~A 57 (124)
.|-+|+++-|. |.+.-.++|.+.|+ +.+|+-++.|.+
T Consensus 2 kIl~~v~~~G~--------GH~~R~~~la~~Lr--g~~v~~~~~~~~ 38 (318)
T PF13528_consen 2 KILFYVQGHGL--------GHASRCLALARALR--GHEVTFITSGPA 38 (318)
T ss_pred EEEEEeCCCCc--------CHHHHHHHHHHHHc--cCceEEEEcCCc
Confidence 47889999884 99999999999995 588998888854
No 149
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=26.83 E-value=99 Score=25.49 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=24.6
Q ss_pred EEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEE
Q 033232 14 LYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVN 53 (124)
Q Consensus 14 lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~ 53 (124)
|.|-+.|+. |.++.|+|+.+.|+.-..+|.-++
T Consensus 4 i~~~~GGTG-------GHi~Pala~a~~l~~~g~~v~~vg 36 (352)
T PRK12446 4 IVFTGGGSA-------GHVTPNLAIIPYLKEDNWDISYIG 36 (352)
T ss_pred EEEEcCCcH-------HHHHHHHHHHHHHHhCCCEEEEEE
Confidence 566666655 999999999999997444555443
No 150
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=26.12 E-value=1.2e+02 Score=24.35 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEcce
Q 033232 13 YLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGM 56 (124)
Q Consensus 13 ~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~ 56 (124)
.|.|...|+. |++..|. +.+.|+...+++.-++.|-
T Consensus 3 ki~i~~Ggt~-------G~i~~a~-l~~~L~~~~~~~~~~~~~~ 38 (380)
T PRK00025 3 RIAIVAGEVS-------GDLLGAG-LIRALKARAPNLEFVGVGG 38 (380)
T ss_pred eEEEEecCcC-------HHHHHHH-HHHHHHhcCCCcEEEEEcc
Confidence 4566655544 9999999 9999998767777776655
No 151
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=25.10 E-value=69 Score=28.98 Aligned_cols=65 Identities=23% Similarity=0.290 Sum_probs=37.4
Q ss_pred CCCCCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcC---CCeEEEEcceeccHHH--HHHhcCCCCceeeccCcE
Q 033232 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK---SKVYTVNCGMAYGQAA--MLLSVGAKGYRGLQPNSS 80 (124)
Q Consensus 6 ~~~~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~---~~V~Tv~~G~AaS~as--lil~aG~kg~R~~~p~a~ 80 (124)
.++..|| |+|.||| .+....|.+.-+..+ .+++++.+|..-+.-+ .|-.|-..|+-..+.|++
T Consensus 113 s~~~~Pi-l~~~s~g-----------~Dp~~~i~~lA~~~~~~~~~~~~islG~~~~~~a~~~l~~a~~~G~Wv~L~N~H 180 (707)
T PF03028_consen 113 SSPTTPI-LFILSPG-----------SDPSSEIEQLAKKKGFGNKKLQSISLGSGQGPEAEKALKEAAKEGHWVLLQNCH 180 (707)
T ss_dssp TTTTC-E-EEEE-TT-------------THHHHHHHHHCTT-----EEEEETTSHHHHHHHHHHHHHHHHTSEEEEETGG
T ss_pred cCCCCce-EEEeCCC-----------CChHHHHHHHHHHHhhhhhheeecCCCCchHHHHHHHHHHHhcCCeEEEcccch
Confidence 3456777 7888999 455667777777766 7899999988776632 233444445544444444
Q ss_pred EE
Q 033232 81 TK 82 (124)
Q Consensus 81 iM 82 (124)
++
T Consensus 181 L~ 182 (707)
T PF03028_consen 181 LA 182 (707)
T ss_dssp GG
T ss_pred hH
Confidence 44
No 152
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=24.99 E-value=72 Score=29.08 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=35.1
Q ss_pred HhhHHHHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEec
Q 033232 32 ETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (124)
Q Consensus 32 v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHq 85 (124)
...|--+++-|+..+.+|+-++.|+..+. .|..|+|..++.++-||..
T Consensus 434 ~~Ya~lL~eki~~~~~~v~LvNTGw~GG~------yg~~G~Ri~l~~TRaiv~a 481 (561)
T PTZ00311 434 TVYAEMLAEKIKKHNTRVWLLNTGWIGGS------YGSGGKRMPLKYTRAIIDA 481 (561)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCccCCc------CCCCCcccCHHHHHHHHHH
Confidence 34566789999999999999999998752 1332567777776666543
No 153
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=24.78 E-value=3.1e+02 Score=22.91 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCCCCCCCCccchHhhHHH-----------HHHHHhhcCCCeEEEEcceeccHHHHHHhc-CCCCceeec
Q 033232 9 SKPIYLYINSSGTQNEKKESVGAETDAYA-----------IADAMAYCKSKVYTVNCGMAYGQAAMLLSV-GAKGYRGLQ 76 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~~~~~~G~v~~g~a-----------Iyd~m~~~~~~V~Tv~~G~AaS~aslil~a-G~kg~R~~~ 76 (124)
.-|+.+...|.| +-..+|.. +....+.-.-|..++..|-+.+-++..++. | +-..+-
T Consensus 168 rlPlV~l~~SGG---------ARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~--Diiiae 236 (296)
T CHL00174 168 SLPLIIVCASGG---------ARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTASFGMLG--DIIIAE 236 (296)
T ss_pred CCCEEEEECCCC---------ccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHHHHHcc--cEEEEe
Confidence 458888888888 55555441 121122334588888888888777777664 7 456788
Q ss_pred cCcEEEEecCC
Q 033232 77 PNSSTKLYLPV 87 (124)
Q Consensus 77 p~a~iMiHqp~ 87 (124)
|+|.+-+-=|.
T Consensus 237 ~~A~IgfAGPr 247 (296)
T CHL00174 237 PNAYIAFAGKR 247 (296)
T ss_pred CCeEEEeeCHH
Confidence 99988776553
No 154
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=23.16 E-value=2.8e+02 Score=25.90 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=47.9
Q ss_pred CEEEEEcCCCCCCCCCC-ccchHhhHHHHHHHHhhcC---------------------CCeEEEEcceeccHHHHHHhcC
Q 033232 11 PIYLYINSSGTQNEKKE-SVGAETDAYAIADAMAYCK---------------------SKVYTVNCGMAYGQAAMLLSVG 68 (124)
Q Consensus 11 ~I~lyINSpG~~~~~~~-~~G~v~~g~aIyd~m~~~~---------------------~~V~Tv~~G~AaS~aslil~aG 68 (124)
=+.++.++.|+..++|+ ..+...+....+++|..+. .+|-+++....+.++-.+++.+
T Consensus 280 YaVV~~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~ 359 (767)
T PRK05371 280 FAVVYVSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTG 359 (767)
T ss_pred eEEEEEcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHHHHHHHHHHhhC
Confidence 36788899998888887 4466667777777777654 4677777777666666666667
Q ss_pred CCCceeeccCc
Q 033232 69 AKGYRGLQPNS 79 (124)
Q Consensus 69 ~kg~R~~~p~a 79 (124)
.++=+.+.|.+
T Consensus 360 pp~LkAIVp~a 370 (767)
T PRK05371 360 VEGLETIIPEA 370 (767)
T ss_pred CCcceEEEeeC
Confidence 66655555544
No 155
>PF12854 PPR_1: PPR repeat
Probab=22.22 E-value=58 Score=17.80 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=12.5
Q ss_pred chHhhHHHHHHHHh
Q 033232 30 GAETDAYAIADAMA 43 (124)
Q Consensus 30 G~v~~g~aIyd~m~ 43 (124)
|.+.+|+.+++.|+
T Consensus 21 G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 21 GRVDEAFELFDEMK 34 (34)
T ss_pred CCHHHHHHHHHhCc
Confidence 89999999999874
No 156
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=22.06 E-value=1.2e+02 Score=27.74 Aligned_cols=44 Identities=16% Similarity=0.069 Sum_probs=33.5
Q ss_pred cEEEE----ecCCCCCC----------CcCHHHHHHHHHHHHHHHhHcccccchhhcc
Q 033232 79 SSTKL----YLPVVGRS----------SGPVTDMWRKVFPTFLLLSFLYYPQSFSHYI 122 (124)
Q Consensus 79 a~iMi----Hqp~~~~~----------~G~a~di~~~a~el~~~~~~l~~~~~~~~~~ 122 (124)
..+-+ |||.+..- +-+.++|....+|+.+..+.++-+..++.|.
T Consensus 342 gElG~HGYNHqpL~~~~~~~~~~~Y~~W~~~~~m~~sl~~l~~f~~~l~p~~~~~~YV 399 (585)
T PF09960_consen 342 GELGLHGYNHQPLTLEGDYGDEYGYKPWPSKEDMAESLKELKRFVKSLFPNYEPSSYV 399 (585)
T ss_pred CceEEecccCCCCcCCCcccccccCcCCCCHHHHHHHHHHHHHHHHHhCCCcceEEec
Confidence 34555 58885333 4489999999999999999998887777764
No 157
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=21.96 E-value=2.9e+02 Score=19.42 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=27.1
Q ss_pred HHHHHHhhcCCCeEEEEcceeccHHHHHHhcCCCCceeecc
Q 033232 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP 77 (124)
Q Consensus 37 aIyd~m~~~~~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p 77 (124)
.....++....+|+++.+|.. ....|--.|+.++.+++++
T Consensus 121 ~~~~~l~~~gv~i~~ig~g~~-~~~~L~~ia~~~~~~~~~~ 160 (164)
T cd01472 121 EPAVELKQAGIEVFAVGVKNA-DEEELKQIASDPKELYVFN 160 (164)
T ss_pred HHHHHHHHCCCEEEEEECCcC-CHHHHHHHHCCCchheEEe
Confidence 344567766677888888876 6777777777766556544
No 158
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=21.68 E-value=2.5e+02 Score=23.11 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=39.2
Q ss_pred chHhhHHHHHHHHhhcC-CCeEEEEcceeccHHHHHHhcCCCCceeeccCcEEEEecCCC
Q 033232 30 GAETDAYAIADAMAYCK-SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV 88 (124)
Q Consensus 30 G~v~~g~aIyd~m~~~~-~~V~Tv~~G~AaS~aslil~aG~kg~R~~~p~a~iMiHqp~~ 88 (124)
+...+.-|.|+.|+.-. .+=..+..|.-.+.+..+-.|+. .|-+-+.+|.|.+
T Consensus 110 n~y~Di~avye~Lr~~~g~~~~Iil~G~SiGt~~tv~Lasr------~~~~alVL~SPf~ 163 (258)
T KOG1552|consen 110 NLYADIKAVYEWLRNRYGSPERIILYGQSIGTVPTVDLASR------YPLAAVVLHSPFT 163 (258)
T ss_pred cchhhHHHHHHHHHhhcCCCceEEEEEecCCchhhhhHhhc------CCcceEEEeccch
Confidence 78889999999999766 45556677887777776655552 2466788899984
No 159
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.24 E-value=1e+02 Score=15.56 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=14.9
Q ss_pred chHhhHHHHHHHHhhcC
Q 033232 30 GAETDAYAIADAMAYCK 46 (124)
Q Consensus 30 G~v~~g~aIyd~m~~~~ 46 (124)
|+...++.+++.|+..+
T Consensus 15 g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 15 GDPDAALQLFDEMKEQG 31 (34)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 89999999999998744
No 160
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.22 E-value=2.8e+02 Score=21.31 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCCCCCCCccchHhhHHHHHHHHhhcCCCeEEEEccee
Q 033232 9 SKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMA 57 (124)
Q Consensus 9 ~~~I~lyINSpG~~~~~~~~~G~v~~g~aIyd~m~~~~~~V~Tv~~G~A 57 (124)
.+.|-+++-|+|.-.+ | +...+...++.-.-.|.+++.|-.
T Consensus 107 ~~rivi~v~S~~~~d~-----~---~i~~~~~~lkk~~I~v~vI~~G~~ 147 (187)
T cd01452 107 KQRIVAFVGSPIEEDE-----K---DLVKLAKRLKKNNVSVDIINFGEI 147 (187)
T ss_pred cceEEEEEecCCcCCH-----H---HHHHHHHHHHHcCCeEEEEEeCCC
Confidence 3589999999983211 2 222444555566668888888865
Done!