BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033233
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DNW|A Chain A, Solution Structure Of Rsgi Ruh-059, An Acp Domain Of Acyl
Carrier Protein, Mitochondrial [precursor] From Human
Cdna
Length = 99
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 54/75 (72%)
Query: 43 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDK 102
LT E + DRVL V+K + K+DP +++ + HF KDLGLDSLD VEI+MA+E+EF EIPD
Sbjct: 11 LTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDI 70
Query: 103 EAVRIDACNLAIEYI 117
+A ++ ++YI
Sbjct: 71 DAEKLMCPQEIVDYI 85
>pdb|1X3O|A Chain A, Crystal Structure Of The Acyl Carrier Protein From Thermus
Thermophilus Hb8
Length = 80
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 53/75 (70%)
Query: 43 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDK 102
+T++E+ ++V +V+ +V+P +VT + F +DLG DSLD VE++M LE+EF LEI D+
Sbjct: 1 MTEQEIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDE 60
Query: 103 EAVRIDACNLAIEYI 117
EA +I A+EYI
Sbjct: 61 EAEKIRTVKDAVEYI 75
>pdb|2K92|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K93|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
pdb|2K94|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl
Group
Length = 77
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%)
Query: 50 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDA 109
+RV ++ V +VT + F +DLG DSLD VE+VMALEEEF EIPD+EA +I
Sbjct: 5 ERVKKIIGQQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 64
Query: 110 CNLAIEYIYNH 120
AI+YI H
Sbjct: 65 VQAAIDYINGH 75
>pdb|3EJB|A Chain A, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|C Chain C, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|E Chain E, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|G Chain G, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|A Chain A, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|C Chain C, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|E Chain E, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|G Chain G, Crystal Structure Of P450bioi In Complex With Hexadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|A Chain A, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|C Chain C, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|E Chain E, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|G Chain G, Crystal Structure Of P450bioi In Complex With Octadec-9z-
Enoic Acid Ligated Acyl Carrier Protein
Length = 97
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%)
Query: 50 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDA 109
+RV ++ V +VT + F +DLG DSLD VE+VMALEEEF EIPD+EA +I
Sbjct: 25 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 84
Query: 110 CNLAIEYIYNH 120
AI+YI H
Sbjct: 85 VQAAIDYINGH 95
>pdb|1L0H|A Chain A, Crystal Structure Of Butyryl-Acp From E.Coli
pdb|2FHS|C Chain C, Structure Of Acyl Carrier Protein Bound To Fabi, The Enoyl
Reductase From Escherichia Coli
pdb|3NY7|B Chain B, Stas Domain Of Ychm Bound To Acp
Length = 78
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%)
Query: 50 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDA 109
+RV ++ V +VT + F +DLG DSLD VE+VMALEEEF EIPD+EA +I
Sbjct: 6 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 65
Query: 110 CNLAIEYIYNH 120
AI+YI H
Sbjct: 66 VQAAIDYINGH 76
>pdb|1T8K|A Chain A, Crystal Structure Of Apo Acyl Carrier Protein From E. Coli
pdb|2FAC|A Chain A, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAC|B Chain B, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAD|A Chain A, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAD|B Chain B, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAE|A Chain A, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|2FAE|B Chain B, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|1ACP|A Chain A, Refinement Of The Nmr Structures For Acyl Carrier Protein
With Scalar Coupling Data
pdb|4ETW|D Chain D, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|B Chain B, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 77
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%)
Query: 50 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDA 109
+RV ++ V +VT + F +DLG DSLD VE+VMALEEEF EIPD+EA +I
Sbjct: 5 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 64
Query: 110 CNLAIEYIYNH 120
AI+YI H
Sbjct: 65 VQAAIDYINGH 75
>pdb|1L0I|A Chain A, Crystal Structure Of Butyryl-Acp I62m Mutant
Length = 78
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%)
Query: 50 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDA 109
+RV ++ V +VT + F +DLG DSLD VE+VMALEEEF EIPD+EA ++
Sbjct: 6 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTT 65
Query: 110 CNLAIEYIYNH 120
AI+YI H
Sbjct: 66 VQAAIDYINGH 76
>pdb|2L0Q|A Chain A, Nmr Solution Structure Of Vibrio Harveyi Acyl Carrier
Protein (Acp)
Length = 80
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 50 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDA 109
+RV ++ VD ++V + F DLG DSLD VE+VMALEEEF EIPD+EA +I
Sbjct: 9 ERVKKIIVEQLGVDEAEVKNEASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 68
Query: 110 CNLAIEYIYNH 120
AI+Y+ +H
Sbjct: 69 VQAAIDYVNSH 79
>pdb|4DXE|H Chain H, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|L Chain L, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|K Chain K, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|G Chain G, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|J Chain J, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|I Chain I, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
Length = 101
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%)
Query: 47 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVR 106
E D+V ++ VD +VT D F+ DLG DSLD E+VM LE+EF EIPD+EA +
Sbjct: 26 ENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEK 85
Query: 107 IDACNLAIEYI 117
I+ A+++I
Sbjct: 86 INTVGDAVKFI 96
>pdb|2QNW|A Chain A, Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein
Length = 82
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 48 VIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRI 107
+++RV VV VD +++ P+ +F KDL DSLD+VE+VMA EE+F + IPD+EA +I
Sbjct: 8 LLERVKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKI 67
Query: 108 DACNLAIEYI 117
A+ YI
Sbjct: 68 ATVQDALSYI 77
>pdb|2EHS|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 1)
pdb|2EHT|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 2)
Length = 77
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 50 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDA 109
+RV ++ V+ ++TP+ F +DLG DSLD VE++MA EEEF +EIPD++A +I
Sbjct: 4 ERVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQT 63
Query: 110 CNLAIEYI 117
I Y+
Sbjct: 64 VGDVINYL 71
>pdb|2X2B|A Chain A, Crystal Structure Of Malonyl-Acp (Acyl Carrier Protein)
From Bacillus Subtilis
Length = 78
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 47 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVR 106
+ ++RV ++ VD + V + F++DLG DSLD VE+VM LE+EF +EI D++A +
Sbjct: 4 DTLERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEK 63
Query: 107 IDACNLAIEYIYNHP 121
I A+ YI N
Sbjct: 64 IATVGDAVNYIQNQQ 78
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
Length = 76
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 47 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVR 106
+ ++RV ++ VD + V + F++DLG DSLD VE+VM LE+EF +EI D++A +
Sbjct: 2 DTLERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEK 61
Query: 107 IDACNLAIEYIYNHP 121
I A+ YI N
Sbjct: 62 IATVGDAVNYIQNQQ 76
>pdb|2L3V|A Chain A, Nmr Structure Of Acyl Carrier Protein From Brucella
Melitensis
Length = 79
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%)
Query: 50 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDA 109
+RV +V VD +VT F DLG DSLD VE+VMA EEEF +EIPD A I
Sbjct: 7 ERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILT 66
Query: 110 CNLAIEYI 117
A+++I
Sbjct: 67 VGDAVKFI 74
>pdb|1F80|D Chain D, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|E Chain E, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
pdb|1F80|F Chain F, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo-
(Acyl Carrier Protein)
Length = 81
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 43 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDK 102
L + ++RV ++ VD + V + F++DLG D LD VE+VM LE+EF +EI D+
Sbjct: 3 LGSADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDE 62
Query: 103 EAVRIDACNLAIEYIYNH 120
+A +I A+ YI N
Sbjct: 63 DAEKIATVGDAVNYIQNQ 80
>pdb|3GZL|A Chain A, Crystal Structure Of Holo Pfacp Disulfide-Linked Dimer
pdb|3GZM|A Chain A, Crystal Structure Of Holo Pfacp Reduced Monomer
pdb|3GZM|B Chain B, Crystal Structure Of Holo Pfacp Reduced Monomer
Length = 81
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 62 VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 117
V+ ++ + +F KDLG DSLD VE++MALEE+F + I D++A++I+ AI+YI
Sbjct: 20 VEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYI 75
>pdb|2FQ0|A Chain A, Solution Structure Of Major Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
pdb|2FQ2|A Chain A, Solution Structure Of Minor Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
Length = 79
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 62 VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 117
V+ ++ + +F KDLG DSLD VE++MALEE+F + I D++A++I+ AI+YI
Sbjct: 18 VEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYI 73
>pdb|2LOL|A Chain A, Nmr Structure Of An Acyl-Carrier Protein From Rickettsia
Prowazekii, Seattle Structural Genomics Center For
Infectious Disease (Ssgcid)
Length = 81
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 44 TKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKE 103
T +++ +V+ +V D + +T D F +DL DSLD VE++MA+E E+ ++IPD E
Sbjct: 3 TTDKIEQKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDE 62
Query: 104 AVRIDACNLAIEYI 117
A +I + I+YI
Sbjct: 63 ATKIKTVSDVIKYI 76
>pdb|2L4B|A Chain A, Solution Structure Of A Putative Acyl Carrier Protein From
Anaplasma Phagocytophilum. Seattle Structural Genomics
Center For Infectious Disease Target Anpha.01018.A
Length = 88
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 42 HLTKEEVIDRVL-SVVKCFPKVDPSQ--VTPDVHFQKDLGLDSLDNVEIVMALEEEFKLE 98
+ EE+ +V+ SV+ C D + ++ + KD LDSLD V+++M+LEE F LE
Sbjct: 3 SMVSEEIKAQVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLE 62
Query: 99 IPDKEAVRIDACNLAIEYI 117
I D++A +++ + YI
Sbjct: 63 ISDEDAQKLETVDDICRYI 81
>pdb|2CNR|A Chain A, Structural Studies On The Interaction Of Scfas Acp With
Acps
Length = 82
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 44 TKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKE 103
T+EE++ + +V + V D F DL +DSL VE+V+A EE F ++IPD +
Sbjct: 4 TQEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDD 63
Query: 104 AVRIDACNLAIEYIYNH 120
+ A +YI +H
Sbjct: 64 VKNLKTVGDATKYILDH 80
>pdb|2KOO|A Chain A, Nmr Solution Structures Of Hexanoyl-Acp From The
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOP|A Chain A, Nmr Solution Structures Of 3-Oxooctanyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOQ|A Chain A, Nmr Solution Structures Of 3-Hydroxyoctanoyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOR|A Chain A, Nmr Solution Structures Of 2-Octenoyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOS|A Chain A, Nmr Solution Structures Of Octanoyl-Acp From Streptomyces
Coelicolor Fatty Acid Synthase
Length = 81
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 44 TKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKE 103
T+EE++ + +V + V D F DL +DSL VE+V+A EE F ++IPD +
Sbjct: 3 TQEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDD 62
Query: 104 AVRIDACNLAIEYIYNH 120
+ A +YI +H
Sbjct: 63 VKNLKTVGDATKYILDH 79
>pdb|2AVA|A Chain A, Solution Structure Of Stearoyl-Acyl Carrier Protein
pdb|2FVA|A Chain A, Structure Of 18:0-Acp With Docked Fatty Acid
pdb|2FVE|A Chain A, Structure Of 10:0-Acp (Protein Alone)
pdb|2FVF|A Chain A, Structure Of 10:0-Acp (Protein With Docked Fatty Acid)
Length = 82
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 45 KEEVIDRVLSVVKCFPKVDPSQV-TPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKE 103
K+E ID+V +VK + V T D F K LG DSLD VEIVM LEEEF + + + +
Sbjct: 2 KKETIDKVSDIVKEKLALGADVVVTADSEFSK-LGADSLDTVEIVMNLEEEFGINVDEDK 60
Query: 104 AVRIDACNLAIEYI 117
A I A + I
Sbjct: 61 AQDISTIQQAADVI 74
>pdb|2XZ0|D Chain D, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|C Chain C, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|D Chain D, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein
Length = 82
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 45 KEEVIDRVLSVVKCFPKVDPSQV-TPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKE 103
K+E ID+V +VK + V T D F K LG D LD VEIVM LEEEF + + + +
Sbjct: 2 KKETIDKVSDIVKEKLALGADVVVTADSEFSK-LGADXLDTVEIVMNLEEEFGINVDEDK 60
Query: 104 AVRIDACNLAIEYI 117
A I A + I
Sbjct: 61 AQDISTIQQAADVI 74
>pdb|1KLP|A Chain A, The Solution Structure Of Acyl Carrier Protein From
Mycobacterium Tuberculosis
Length = 115
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 62 VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 117
++PS++TP+ F DL +DSL VEI + E+++ ++IPD++ + + YI
Sbjct: 22 IEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYI 77
>pdb|3LMO|A Chain A, Crystal Structure Of Specialized Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
pdb|2KW2|A Chain A, Solution Nmr Of The Specialized Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
pdb|2LL8|A Chain A, Solution Nmr Structure Of The Specialized Holo-Acyl
Carrier Protein Rpa2022 From Rhodopseudomonas Palustris
Refined With Nh Rdcs, Northeast Structural Genomics
Consortium Target Rpr324
pdb|2LPK|A Chain A, Solution Nmr Of The Specialized Apo-Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
Length = 101
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 48 VIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIP 100
DRV +++ + +TP+ H DLG+DSLD ++I A+++ F +++P
Sbjct: 4 TFDRVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLP 56
>pdb|2KWL|A Chain A, Solution Structure Of Acyl Carrier Protein From Borrelia
Burgdorferi
Length = 84
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 43 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDK 102
+ +E+ +V S++ ++T D F +DL DSLD E++ LEE F +IP+
Sbjct: 5 MDNDEIFSKVRSIISEQLDKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPEN 64
Query: 103 EAVRIDACNLAIEYI 117
EA + + +I
Sbjct: 65 EANEFETVGDVVNFI 79
>pdb|1AF8|A Chain A, Actinorhodin Polyketide Synthase Acyl Carrier Protein From
Streptomyces Coelicolor A3(2), Nmr, 24 Structures
pdb|2AF8|A Chain A, Actinorhodin Polyketide Synthase Acyl Carrier Protein From
Streptomyces Coelicolor A3(2), Nmr, Minimized Average
Structure
Length = 86
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 54 SVVKCFPKVDPSQVTPD---VHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRID 108
++V+C + D + ++ D + F+ D+G DSL +E LE + + IPD A R+D
Sbjct: 13 ALVECAGETDGTDLSGDFLDLRFE-DIGYDSLALMETAARLESRYGVSIPDDVAGRVD 69
>pdb|1VKU|A Chain A, Crystal Structure Of Acyl Carrier Protein (Tm0175) From
Thermotoga Maritima At 2.00 A Resolution
Length = 100
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 75 KDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRI 107
K+LG DS+D +++V E+EF L I D+E +I
Sbjct: 44 KELGFDSIDVIDLVXFFEDEFALRIEDEEISKI 76
>pdb|2K0X|A Chain A, The Actinorhodin Holo Acyl Carrier Protein From S.
Coelicolor
pdb|2K0Y|A Chain A, The Actinorhodin Apo Acyl Carrier Protein From S.
Coelicolor
pdb|2KG6|A Chain A, Solution Structure Of The Acetyl Actinorhodin Acyl Carrier
Protein From Streptomyces Coelicolor
pdb|2KG8|A Chain A, Nmr Solution Structures Of Malonyl Acp From The
Actinorhodin Polyketide Synthase In Streptomyces
Coelicolor
pdb|2KG9|A Chain A, Nmr Solution Structures Of Butyryl-Acp (A Non-Polar, Non
Pathway Intermediate) From The Actinorhodin Polyketide
Synthase In Streptomyces Coelicolor
pdb|2KGA|A Chain A, Nmr Solution Structures Of Hexanoyl Acp (A Non Natural
Intermediate) From The Actinorhodin Polyketide Synthase
In Streptomyces Coelicolor
pdb|2KGC|A Chain A, Nmr Solution Structures Of Octanoyl Acp (A Non-Natural
Intermediate) From The Actinorhodin Polyketide Synthase
In Streptomyces Coelicolor
pdb|2KGD|A Chain A, Nmr Solution Structures Of 3-Oxo-Butyl-Acp, An
Intermediate Mimic From The Actinorhodin Polyketide
Synthase In Streptomyces Coelicolor
pdb|2KGE|A Chain A, Nmr Solution Structures Of 3,5-Dioxohexyl Acp (A Triketide
Mimic) From The Actinorhodin Polyketide Synthase In
Streptomyces Coelicolor
Length = 86
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 54 SVVKCFPKVDPSQVTPD---VHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRID 108
++V+ + D + ++ D + F+ D+G DSL +E LE + + IPD A R+D
Sbjct: 13 ALVESAGETDGTDLSGDFLDLRFE-DIGYDSLALMETAARLESRYGVSIPDDVAGRVD 69
>pdb|3CE7|A Chain A, Crystal Structure Of Toxoplasma Specific Mitochodrial Acyl
Carrier Protein, 59.M03510
Length = 107
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 61 KVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEA 104
KV PS ++ ++D D LD VE V+ +EE F + +PD+ A
Sbjct: 37 KVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVA 80
>pdb|2JQ4|A Chain A, Complete Resonance Assignments And Solution Structure
Calculation Of Atc2521 (Nesg Id: Att6) From
Agrobacterium Tumefaciens
Length = 105
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 78 GLDSLDNVEIVMALEEEFKLEIPDK 102
GL S +V++++ +EE F +E PD
Sbjct: 54 GLSSFASVQLMLGIEEAFDIEFPDN 78
>pdb|2PNG|A Chain A, Type I Rat Fatty Acid Synthase Acyl Carrier Protein (Acp)
Domain
Length = 89
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 76 DLGLDSLDNVEIVMALEEEFKLEIPDKE 103
DLGLDSL VE+ LE E L +P +E
Sbjct: 33 DLGLDSLMGVEVRQILEREHDLVLPIRE 60
>pdb|2CGQ|A Chain A, A Putative Acyl Carrier Protein(Rv0033) From Mycobacterium
Tuberculosis
Length = 113
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 76 DLGLDSLDNVEIVMALEEEFKLEIPDKEAVRI 107
DLG DSL +++ LE+EF + I ++A I
Sbjct: 54 DLGFDSLKLFQLITELEDEFDIAISFRDAQNI 85
>pdb|2EEX|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
pdb|2EJ1|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
pdb|2EQD|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
Length = 519
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 39 HDDHLTKEEVIDRVLSVVKCFPKVDP 64
H D++T +E+I++ +++ K KVDP
Sbjct: 198 HPDNVTAKELIEKSVALSKAVKKVDP 223
>pdb|2E0P|A Chain A, The Crystal Structure Of Cel44a
pdb|2E4T|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
pdb|2EO7|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
Length = 519
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 39 HDDHLTKEEVIDRVLSVVKCFPKVDP 64
H D++T +E+I++ +++ K KVDP
Sbjct: 198 HPDNVTAKELIEKSVALSKAVKKVDP 223
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 50 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKE 103
D V +V D + + PD DLGLDSL VE+ LE E L + +E
Sbjct: 2127 DLVKAVAHILGIRDVASINPDSTL-VDLGLDSLMGVEVRQILEREHDLVLSMRE 2179
>pdb|2KR5|A Chain A, Solution Structure Of An Acyl Carrier Protein Domain From
Fu I Polyketide Synthase
Length = 89
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 47 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVR 106
E +D V+ VV + ++T D +F D+G+DSL ++ I E+ L++ + ++
Sbjct: 11 EKLDAVMRVVSEESGIALEELTDDSNFA-DMGIDSLSSMVIGSRFREDLGLDLGPEFSLF 69
Query: 107 ID 108
ID
Sbjct: 70 ID 71
>pdb|2CG5|B Chain B, Structure Of Aminoadipate-Semialdehyde Dehydrogenase-
Phosphopantetheinyl Transferase In Complex With
Cytosolic Acyl Carrier Protein And Coenzyme A
Length = 91
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 76 DLGLDSLDNVEIVMALEEEFKLEIPDKE 103
DLGLD+L +VE+ LE E L + +E
Sbjct: 35 DLGLDALMSVEVRQTLERELNLVLSVRE 62
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 14 PVQTLALTGSKQRWSVLGSLRFMSSHDD------HLTKEEVIDRVLSVVKCFPKVDPSQV 67
P +TL TG RW G++ + DD H + E I++ L + +P V + V
Sbjct: 835 PGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQL---QEYPGVKDAVV 891
Query: 68 TPDVHFQKDLGLDS 81
D H D +++
Sbjct: 892 VADRHESGDASINA 905
>pdb|3HDS|A Chain A, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With Mes
pdb|3HDS|B Chain B, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With Mes
pdb|3HDS|C Chain C, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With Mes
pdb|3HDS|D Chain D, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With Mes
pdb|3HF5|A Chain A, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With 3-Methylmuconolactone
pdb|3HF5|B Chain B, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With 3-Methylmuconolactone
pdb|3HF5|C Chain C, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With 3-Methylmuconolactone
pdb|3HF5|D Chain D, Crystal Structure Of 4-Methylmuconolactone Methylisomerase
In Complex With 3-Methylmuconolactone
Length = 116
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 71 VHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDA---CNLAIEYIYNHPMAS 124
VHFQ G+ L E+ + +P + RIDA C A E Y M S
Sbjct: 34 VHFQMSAGMPGLHKYEVRLVAGNPTDTHVPYLDVGRIDAIGECWFASEEQYQVYMES 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,510,830
Number of Sequences: 62578
Number of extensions: 122459
Number of successful extensions: 372
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 50
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)