Query 033233
Match_columns 124
No_of_seqs 223 out of 1122
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 11:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1748 Acyl carrier protein/N 99.9 2.7E-22 5.8E-27 140.9 5.1 119 6-124 7-130 (131)
2 PRK05350 acyl carrier protein; 99.8 1.6E-20 3.5E-25 122.7 6.4 81 42-122 1-81 (82)
3 CHL00124 acpP acyl carrier pro 99.8 2.7E-20 5.8E-25 121.2 6.1 82 43-124 1-82 (82)
4 PRK07117 acyl carrier protein; 99.8 3.9E-20 8.5E-25 120.7 6.7 78 43-121 1-79 (79)
5 PRK12449 acyl carrier protein; 99.8 9.8E-20 2.1E-24 118.0 7.2 79 43-121 1-79 (80)
6 PTZ00171 acyl carrier protein; 99.8 8.6E-20 1.9E-24 131.7 7.4 90 35-124 58-147 (148)
7 PRK05883 acyl carrier protein; 99.8 1.7E-19 3.8E-24 120.4 8.1 83 40-122 7-89 (91)
8 PRK05828 acyl carrier protein; 99.8 1.8E-19 3.8E-24 118.9 7.1 80 43-123 1-81 (84)
9 PRK07639 acyl carrier protein; 99.8 2.6E-19 5.6E-24 118.4 7.9 80 43-122 1-83 (86)
10 PRK08172 putative acyl carrier 99.8 9.6E-20 2.1E-24 119.5 5.2 77 47-123 4-80 (82)
11 TIGR00517 acyl_carrier acyl ca 99.7 3.1E-18 6.7E-23 110.2 6.2 75 46-120 2-76 (77)
12 COG0236 AcpP Acyl carrier prot 99.7 1.9E-17 4.2E-22 107.6 6.4 78 44-121 2-79 (80)
13 PRK00982 acpP acyl carrier pro 99.7 7.3E-17 1.6E-21 103.8 5.8 75 47-121 3-77 (78)
14 PRK09184 acyl carrier protein; 99.7 1E-16 2.3E-21 106.7 6.5 79 44-122 3-88 (89)
15 PRK06508 acyl carrier protein; 99.7 5.2E-17 1.1E-21 109.0 4.7 77 47-123 3-90 (93)
16 PRK05087 D-alanine--poly(phosp 99.6 7.1E-15 1.5E-19 95.6 6.4 74 47-120 2-77 (78)
17 PRK07081 acyl carrier protein; 99.6 3.3E-15 7.2E-20 98.1 4.9 73 49-122 2-78 (83)
18 PF00550 PP-binding: Phosphopa 99.6 1.1E-14 2.4E-19 90.3 6.5 67 50-117 1-67 (67)
19 TIGR01688 dltC D-alanine--poly 99.3 6.7E-12 1.5E-16 80.7 5.0 69 50-119 2-73 (73)
20 PF14573 PP-binding_2: Acyl-ca 99.2 1.4E-10 2.9E-15 76.7 7.1 76 44-120 7-87 (96)
21 smart00823 PKS_PP Phosphopante 98.8 3.4E-08 7.4E-13 61.6 7.1 74 46-120 11-85 (86)
22 TIGR02813 omega_3_PfaA polyket 98.8 1.8E-08 3.9E-13 97.3 7.7 79 43-121 1303-1383(2582)
23 PRK06060 acyl-CoA synthetase; 98.4 5.7E-07 1.2E-11 77.3 6.6 75 46-121 544-619 (705)
24 TIGR02813 omega_3_PfaA polyket 98.3 2.3E-06 5E-11 83.2 7.9 79 43-121 1207-1287(2582)
25 TIGR03443 alpha_am_amid L-amin 98.2 2.6E-06 5.5E-11 78.1 7.1 75 45-120 846-920 (1389)
26 PRK10252 entF enterobactin syn 98.1 8.6E-06 1.9E-10 73.9 7.5 73 45-120 976-1048(1296)
27 COG3433 Aryl carrier domain [S 97.9 1.9E-05 4.1E-10 50.5 4.5 69 52-122 3-71 (74)
28 PRK12467 peptide synthase; Pro 97.9 2.5E-05 5.3E-10 78.4 7.4 72 45-119 3603-3674(3956)
29 PRK12467 peptide synthase; Pro 97.9 3.4E-05 7.5E-10 77.4 7.1 73 45-120 1028-1100(3956)
30 PRK12316 peptide synthase; Pro 97.9 4.3E-05 9.4E-10 78.0 7.8 73 45-120 5070-5142(5163)
31 PRK05691 peptide synthase; Val 97.8 6E-05 1.3E-09 76.1 7.8 73 44-119 4238-4310(4334)
32 PRK05691 peptide synthase; Val 97.8 6.1E-05 1.3E-09 76.1 7.1 76 42-120 581-656 (4334)
33 PRK12316 peptide synthase; Pro 97.7 7.5E-05 1.6E-09 76.4 6.7 73 45-120 2514-2586(5163)
34 PF07377 DUF1493: Protein of u 97.5 0.00021 4.5E-09 49.0 5.2 59 46-104 2-64 (111)
35 KOG1202 Animal-type fatty acid 96.6 0.00095 2.1E-08 61.8 1.7 55 51-106 2008-2063(2376)
36 PF10501 Ribosomal_L50: Riboso 95.8 0.061 1.3E-06 36.8 7.2 75 44-119 5-81 (112)
37 TIGR02372 4_coum_CoA_lig 4-cou 94.8 0.12 2.7E-06 42.1 6.9 79 43-121 3-93 (386)
38 KOG1178 Non-ribosomal peptide 86.1 0.77 1.7E-05 42.5 3.4 54 65-119 614-667 (1032)
39 PF08766 DEK_C: DEK C terminal 78.8 6.8 0.00015 23.1 4.5 25 78-102 17-41 (54)
40 KOG2452 Formyltetrahydrofolate 71.8 8.1 0.00018 33.5 4.8 71 49-121 324-395 (881)
41 smart00151 SWIB SWI complex, B 71.8 7.8 0.00017 24.5 3.7 55 41-95 18-75 (77)
42 COG1669 Predicted nucleotidylt 63.9 35 0.00077 23.0 5.8 58 47-104 9-79 (97)
43 PF03471 CorC_HlyC: Transporte 46.8 48 0.001 20.7 4.1 30 88-120 16-45 (81)
44 PF13565 HTH_32: Homeodomain-l 46.7 49 0.0011 20.0 4.1 35 45-99 32-66 (77)
45 PF00874 PRD: PRD domain; Int 39.2 30 0.00064 20.9 2.2 22 83-104 58-79 (89)
46 TIGR03853 matur_matur probable 37.9 78 0.0017 20.5 4.0 38 83-120 19-57 (77)
47 PF10678 DUF2492: Protein of u 37.7 79 0.0017 20.4 4.0 38 83-120 21-59 (78)
48 PF02201 SWIB: SWIB/MDM2 domai 37.4 3.7 8E-05 26.0 -2.2 52 43-94 20-74 (76)
49 PF12117 DUF3580: Protein of u 35.7 86 0.0019 21.7 4.1 48 10-59 60-107 (120)
50 PF09346 SMI1_KNR4: SMI1 / KNR 30.1 35 0.00075 22.0 1.5 18 86-103 5-22 (130)
51 PRK00157 rplL 50S ribosomal pr 28.6 54 0.0012 23.0 2.3 21 79-99 15-35 (123)
52 KOG1142 Transcription initiati 28.5 5.7 0.00012 31.3 -2.9 36 73-108 199-234 (258)
53 TIGR00855 L12 ribosomal protei 27.9 55 0.0012 23.1 2.2 22 78-99 15-36 (126)
54 PF13592 HTH_33: Winged helix- 27.0 51 0.0011 19.6 1.7 21 83-103 6-26 (60)
55 smart00860 SMI1_KNR4 SMI1 / KN 26.0 61 0.0013 20.1 2.1 18 86-103 5-22 (129)
56 PF03816 LytR_cpsA_psr: Cell e 24.4 47 0.001 23.4 1.4 34 84-117 50-83 (149)
57 PF00126 HTH_1: Bacterial regu 24.2 97 0.0021 18.0 2.6 26 75-100 21-46 (60)
58 PF08006 DUF1700: Protein of u 23.7 1.8E+02 0.0038 20.9 4.4 56 43-118 1-61 (181)
59 PF14568 SUKH_6: SMI1-KNR4 cel 23.4 64 0.0014 20.8 1.9 16 87-102 3-18 (120)
60 PF01171 ATP_bind_3: PP-loop f 23.2 39 0.00085 24.3 0.8 24 76-99 7-30 (182)
61 PF06755 DUF1219: Protein of u 23.0 74 0.0016 22.0 2.1 10 109-118 58-67 (114)
62 COG0222 RplL Ribosomal protein 22.9 78 0.0017 22.3 2.2 18 82-99 18-35 (124)
63 CHL00083 rpl12 ribosomal prote 21.4 86 0.0019 22.2 2.2 22 79-100 15-36 (131)
64 PF10045 DUF2280: Uncharacteri 20.5 78 0.0017 21.6 1.8 21 85-105 23-43 (104)
65 TIGR00350 lytR_cpsA_psr cell e 20.1 67 0.0015 22.8 1.5 32 86-117 54-85 (152)
No 1
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=2.7e-22 Score=140.94 Aligned_cols=119 Identities=46% Similarity=0.628 Sum_probs=97.5
Q ss_pred HHHhhcccccccccccccccccchhh----hhccccCCCC-CCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCC
Q 033233 6 AVLDHVRVPVQTLALTGSKQRWSVLG----SLRFMSSHDD-HLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLD 80 (124)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlD 80 (124)
..+.+.+.-+.+|++.++..+-...+ ..++|+...+ ..+++++.++|..++..+..++++.++.+++|..|||+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~p~~l~k~~v~~RVl~VVk~~dki~~~k~~~~s~f~~DLGlD 86 (131)
T KOG1748|consen 7 LSLQRLSSRISTPSSLAQQAPSFNFGRTTGLLRSYSAELPRCLAKKEVVDRVLDVVKKFDKIDPSKLTTDSDFFKDLGLD 86 (131)
T ss_pred HHHHHHhhhhcccchhhhcCcccCcccchhHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhcCCccccchhhHHHHhcCCc
Confidence 33444444455555554444333322 2677776665 589999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCCCCC
Q 033233 81 SLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMAS 124 (124)
Q Consensus 81 SL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~~a~ 124 (124)
||+.+|++++|||+||++||+++..++.|+++.++||.++.+.+
T Consensus 87 SLD~VEiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~~~d~k 130 (131)
T KOG1748|consen 87 SLDTVEIVMALEEEFGIEIPDEDADKIKTVRDAADYIADKPDVK 130 (131)
T ss_pred ccccchhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999987653
No 2
>PRK05350 acyl carrier protein; Provisional
Probab=99.82 E-value=1.6e-20 Score=122.67 Aligned_cols=81 Identities=23% Similarity=0.432 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 42 HLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 42 ~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
.|+++++.++|++++++.++++++.|+++++|.++|||||+++++++.+||++|||+|+++++..+.|++++++||.+++
T Consensus 1 ~m~~~~i~~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~ 80 (82)
T PRK05350 1 MMTREEILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLL 80 (82)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHh
Confidence 38999999999999999999999999999998789999999999999999999999999999999999999999999876
Q ss_pred C
Q 033233 122 M 122 (124)
Q Consensus 122 ~ 122 (124)
+
T Consensus 81 ~ 81 (82)
T PRK05350 81 K 81 (82)
T ss_pred c
Confidence 5
No 3
>CHL00124 acpP acyl carrier protein; Validated
Probab=99.82 E-value=2.7e-20 Score=121.19 Aligned_cols=82 Identities=40% Similarity=0.651 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCCC
Q 033233 43 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPM 122 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~~ 122 (124)
|+++++.+++++++++.++++++.++++++|.+++||||+++++|+..+|++|||+++.+++.++.|++++++||.++++
T Consensus 1 M~~~~i~~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~ 80 (82)
T CHL00124 1 MTKNDIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKIN 80 (82)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHhc
Confidence 78999999999999999999999999999998779999999999999999999999999999999999999999999877
Q ss_pred CC
Q 033233 123 AS 124 (124)
Q Consensus 123 a~ 124 (124)
.|
T Consensus 81 ~~ 82 (82)
T CHL00124 81 KK 82 (82)
T ss_pred cC
Confidence 64
No 4
>PRK07117 acyl carrier protein; Validated
Probab=99.82 E-value=3.9e-20 Score=120.69 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHhhcC-CCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 43 LTKEEVIDRVLSVVKCFP-KVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l-~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
|++++|+++|++++.+.+ ++++++|+++++|. +||+|||+++++++.+|++||++||++++.++.|++++++||.++.
T Consensus 1 M~~~ei~~~v~~ii~e~~p~i~~~~I~~~~~l~-DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~~ 79 (79)
T PRK07117 1 MDKQRIFDILVRHIREVLPDLDQHQFQPEDSLV-DLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAKL 79 (79)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHHHCCCCCChh-hcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHhC
Confidence 789999999999999999 79999999999996 7999999999999999999999999999999999999999998763
No 5
>PRK12449 acyl carrier protein; Provisional
Probab=99.81 E-value=9.8e-20 Score=118.00 Aligned_cols=79 Identities=24% Similarity=0.525 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 43 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
|++++|.+++++++++.++++...++++++|.+++||||+++++|+.++|++|||.|+++++.++.|++++++||.+++
T Consensus 1 m~~~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 79 (80)
T PRK12449 1 MTREEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQRL 79 (80)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHhc
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999999998764
No 6
>PTZ00171 acyl carrier protein; Provisional
Probab=99.80 E-value=8.6e-20 Score=131.67 Aligned_cols=90 Identities=49% Similarity=0.722 Sum_probs=84.9
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHH
Q 033233 35 FMSSHDDHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAI 114 (124)
Q Consensus 35 ~~~~~~~~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv 114 (124)
....+.+.|+++++.++|++++++.++++++.++++++|.+++|||||++++|+.+||++|||+||++++.++.|+++++
T Consensus 58 ~~~~~~~~~~~~~v~~~l~eiiae~l~vd~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlv 137 (148)
T PTZ00171 58 SSKSKQYLLSKEDVLTRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAI 137 (148)
T ss_pred hhcccccccCHHHHHHHHHHHHHHHhCCCHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHH
Confidence 35678899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCC
Q 033233 115 EYIYNHPMAS 124 (124)
Q Consensus 115 ~~I~~~~~a~ 124 (124)
+||.++.+.|
T Consensus 138 d~V~~~~~~~ 147 (148)
T PTZ00171 138 DYIEQNNMAK 147 (148)
T ss_pred HHHHHHHhcc
Confidence 9999887654
No 7
>PRK05883 acyl carrier protein; Validated
Probab=99.80 E-value=1.7e-19 Score=120.41 Aligned_cols=83 Identities=23% Similarity=0.281 Sum_probs=78.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHc
Q 033233 40 DDHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYN 119 (124)
Q Consensus 40 ~~~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~ 119 (124)
..++++++|.++++++|++.++++++.|+++++|.++||||||++++++.+||++|||+|+++++.++.||+++++||.+
T Consensus 7 ~~~~~~~~I~~~l~~iia~~l~v~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~ 86 (91)
T PRK05883 7 AMTSSPSTVSATLLSILRDDLNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAA 86 (91)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHH
Confidence 44668999999999999999999999999999998899999999999999999999999999999999999999999988
Q ss_pred CCC
Q 033233 120 HPM 122 (124)
Q Consensus 120 ~~~ 122 (124)
++.
T Consensus 87 ~~~ 89 (91)
T PRK05883 87 KVR 89 (91)
T ss_pred Hcc
Confidence 764
No 8
>PRK05828 acyl carrier protein; Validated
Probab=99.80 E-value=1.8e-19 Score=118.87 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHhh-cCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 43 LTKEEVIDRVLSVVKC-FPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 43 M~~~ei~~~l~~il~e-~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
|++++|+++|++++++ .++++.+.++.+++|. +||+|||++++++.+||++|||+||++++.++.|++++++||.+++
T Consensus 1 m~~~eI~~~i~~ii~e~~~~~~~d~i~~~~~~~-dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~ 79 (84)
T PRK05828 1 MQEMEILLKIKEIAKKKNFAVTLDESNINKPYR-ELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELK 79 (84)
T ss_pred CCHHHHHHHHHHHHHHhccCCCcccccCCCCHH-hcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHH
Confidence 8999999999999998 5899999999999995 8999999999999999999999999999999999999999998876
Q ss_pred CC
Q 033233 122 MA 123 (124)
Q Consensus 122 ~a 123 (124)
+.
T Consensus 80 ~~ 81 (84)
T PRK05828 80 KQ 81 (84)
T ss_pred hc
Confidence 54
No 9
>PRK07639 acyl carrier protein; Provisional
Probab=99.80 E-value=2.6e-19 Score=118.41 Aligned_cols=80 Identities=15% Similarity=0.316 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCC-CCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhc--ccCccHHHHHHHHHc
Q 033233 43 LTKEEVIDRVLSVVKCFPKVDP-SQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEA--VRIDACNLAIEYIYN 119 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l~v~~-~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l--~~~~Tv~dlv~~I~~ 119 (124)
|+++++.++|+++|++.++.+. ++++++++|.++||+||+++++|+++||++|||+||++++ .++.|++++++||.+
T Consensus 1 M~~~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~ 80 (86)
T PRK07639 1 MRREALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEE 80 (86)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHH
Confidence 7899999999999999999875 8899999999899999999999999999999999999987 689999999999988
Q ss_pred CCC
Q 033233 120 HPM 122 (124)
Q Consensus 120 ~~~ 122 (124)
+.+
T Consensus 81 ~~~ 83 (86)
T PRK07639 81 LQP 83 (86)
T ss_pred hhc
Confidence 764
No 10
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=99.79 E-value=9.6e-20 Score=119.54 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCCCC
Q 033233 47 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMA 123 (124)
Q Consensus 47 ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~~a 123 (124)
++.+++++++++.++++++.|+++++|.++|||||+++++|+.+||++|||+|+.+++.++.|++++++|+.+++.+
T Consensus 4 ~i~~~v~~iiae~l~v~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~~~ 80 (82)
T PRK08172 4 DIEARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSLES 80 (82)
T ss_pred cHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHHhc
Confidence 78999999999999999999999999988999999999999999999999999999999999999999999987653
No 11
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=99.75 E-value=3.1e-18 Score=110.20 Aligned_cols=75 Identities=51% Similarity=0.792 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 46 EEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 46 ~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
+++.++|++++++.++++++.++++++|.+++||||+++++|+..+|++|||+||.+++.++.|++++++||.++
T Consensus 2 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 76 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEEN 76 (77)
T ss_pred hHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhc
Confidence 478899999999999999999999999978999999999999999999999999999999999999999999875
No 12
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=1.9e-17 Score=107.61 Aligned_cols=78 Identities=42% Similarity=0.608 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 44 TKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 44 ~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
....+...+++++.+.++++...+++++.|.++||+|||++++|++.||++|||+||++++.++.|++++++||.++.
T Consensus 2 ~~~~~~~~i~~ii~e~l~~~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~~ 79 (80)
T COG0236 2 QMEAIEERVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEELL 79 (80)
T ss_pred chHHHHHHHHHHHHHHhCCchhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHhc
Confidence 455789999999999999998999999999867999999999999999999999999999999999999999998764
No 13
>PRK00982 acpP acyl carrier protein; Provisional
Probab=99.68 E-value=7.3e-17 Score=103.82 Aligned_cols=75 Identities=47% Similarity=0.745 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 47 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 47 ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
++.+.+++++++.++++++.++++++|.+++||||+++++++..+|++||++++.+++.++.|++++++|+.+++
T Consensus 3 ~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 77 (78)
T PRK00982 3 EIFEKVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKHQ 77 (78)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHHhc
Confidence 688999999999999999999999999669999999999999999999999999999999999999999998764
No 14
>PRK09184 acyl carrier protein; Provisional
Probab=99.68 E-value=1e-16 Score=106.68 Aligned_cols=79 Identities=15% Similarity=0.319 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHhhcCCC---CCCCCCCCCCc-ccccCCChhhHHHHHHHHHHHhCCccChhh---cccCccHHHHHHH
Q 033233 44 TKEEVIDRVLSVVKCFPKV---DPSQVTPDVHF-QKDLGLDSLDNVEIVMALEEEFKLEIPDKE---AVRIDACNLAIEY 116 (124)
Q Consensus 44 ~~~ei~~~l~~il~e~l~v---~~~~I~~dt~l-~~dLGlDSL~~veli~~lEe~fgI~I~~~~---l~~~~Tv~dlv~~ 116 (124)
+.+++.++|+++|++.+++ ++++|+++++| .++||+||+++++|++.+|++|||+|++++ +..+.||+++++|
T Consensus 3 ~~~~l~~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~ 82 (89)
T PRK09184 3 SMTALERELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAY 82 (89)
T ss_pred hHHHHHHHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHH
Confidence 4568999999999999884 89999999997 447999999999999999999999998665 4568999999999
Q ss_pred HHcCCC
Q 033233 117 IYNHPM 122 (124)
Q Consensus 117 I~~~~~ 122 (124)
|.++..
T Consensus 83 I~~~~~ 88 (89)
T PRK09184 83 VAAHRT 88 (89)
T ss_pred HHHhhc
Confidence 987653
No 15
>PRK06508 acyl carrier protein; Provisional
Probab=99.67 E-value=5.2e-17 Score=108.98 Aligned_cols=77 Identities=25% Similarity=0.383 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcc-----------cCccHHHHHH
Q 033233 47 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAV-----------RIDACNLAIE 115 (124)
Q Consensus 47 ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~-----------~~~Tv~dlv~ 115 (124)
.++++|++++++.++++++.|+++++|.++||||||++++|+..+|++|||+|+++++. .+.|+++++.
T Consensus 3 ~i~ekv~~Ilae~~~vd~~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~~~n~~~~~~~~~~~l~~~~~ 82 (93)
T PRK06508 3 STFDKVADIIAETSDIPRDTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQEVNEGKVPTEEYFVLKNLCA 82 (93)
T ss_pred HHHHHHHHHHHHHhCCCHHHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHHhhcccccccchHHHHHHHHH
Confidence 68899999999999999999999999989999999999999999999999999999964 4558888888
Q ss_pred HHHcCCCC
Q 033233 116 YIYNHPMA 123 (124)
Q Consensus 116 ~I~~~~~a 123 (124)
+|.+..++
T Consensus 83 ~i~~~~~~ 90 (93)
T PRK06508 83 KIDELVAA 90 (93)
T ss_pred HHHHHHHh
Confidence 88765543
No 16
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=99.57 E-value=7.1e-15 Score=95.64 Aligned_cols=74 Identities=24% Similarity=0.323 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhccc--CccHHHHHHHHHcC
Q 033233 47 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVR--IDACNLAIEYIYNH 120 (124)
Q Consensus 47 ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~--~~Tv~dlv~~I~~~ 120 (124)
++.++|+++|.+.++.+...++++++|.+++++||+++++|++.+|++|||+||++++.. |.|++++++||.+.
T Consensus 2 ~i~~~I~~iL~~~~~~~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~l 77 (78)
T PRK05087 2 DFKEQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEEL 77 (78)
T ss_pred cHHHHHHHHHHHHhCCChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHHc
Confidence 467889999999888887789999999877779999999999999999999999999865 99999999999865
No 17
>PRK07081 acyl carrier protein; Provisional
Probab=99.57 E-value=3.3e-15 Score=98.06 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=64.6
Q ss_pred HHHHHHHHhhc--CCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcc--cCccHHHHHHHHHcCCC
Q 033233 49 IDRVLSVVKCF--PKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAV--RIDACNLAIEYIYNHPM 122 (124)
Q Consensus 49 ~~~l~~il~e~--l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~--~~~Tv~dlv~~I~~~~~ 122 (124)
.++|++++.+. ++++++.++++++|. ++||||+++++|+..||++|||+||++++. ++.|+++++++|.+.++
T Consensus 2 ~~~i~~ii~~~~~~~~~~~~i~~d~~l~-dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~ 78 (83)
T PRK07081 2 KNTIRTILKKVAKLEVPIDSIADDADLY-EAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQD 78 (83)
T ss_pred hHHHHHHHHHHHcCCCCHHhcCCCCCHh-hcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHh
Confidence 46788888886 556778999999996 899999999999999999999999999985 59999999999987654
No 18
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=99.56 E-value=1.1e-14 Score=90.31 Aligned_cols=67 Identities=39% Similarity=0.654 Sum_probs=63.4
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHH
Q 033233 50 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 117 (124)
Q Consensus 50 ~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I 117 (124)
++|++++++.++++.++++++++|. ++|+||+.+++++..++++||++++..++.++.|++++++||
T Consensus 1 e~l~~~~~~~l~~~~~~i~~~~~~~-~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVDPEEIDPDTDFF-DLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSSGGCTSTTSBTT-TTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcCHhhCCCCCCHH-HhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 4688899999999999999999997 899999999999999999999999999999999999999986
No 19
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=99.28 E-value=6.7e-12 Score=80.73 Aligned_cols=69 Identities=22% Similarity=0.423 Sum_probs=59.2
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCcccccCC-ChhhHHHHHHHHHHHhCCccChhhc--ccCccHHHHHHHHHc
Q 033233 50 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGL-DSLDNVEIVMALEEEFKLEIPDKEA--VRIDACNLAIEYIYN 119 (124)
Q Consensus 50 ~~l~~il~e~l~v~~~~I~~dt~l~~dLGl-DSL~~veli~~lEe~fgI~I~~~~l--~~~~Tv~dlv~~I~~ 119 (124)
++|+++|.++.|.+.....++++|. +.|+ ||++.++++..||++|||+||.+++ .+|.|++.++++|.+
T Consensus 2 e~i~eIL~~i~~~~~~~~~~d~~L~-~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i~~~v~~ 73 (73)
T TIGR01688 2 NGVLDILAEVTGSDDVKENPDLELF-EEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKLEE 73 (73)
T ss_pred hHHHHHHHHHhcCcccccCccHHHH-HccchhHHHHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHHHHHHhC
Confidence 5688888888766554568899998 6665 9999999999999999999999997 679999999999863
No 20
>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A.
Probab=99.17 E-value=1.4e-10 Score=76.75 Aligned_cols=76 Identities=28% Similarity=0.464 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCCCCc-----ccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHH
Q 033233 44 TKEEVIDRVLSVVKCFPKVDPSQVTPDVHF-----QKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIY 118 (124)
Q Consensus 44 ~~~ei~~~l~~il~e~l~v~~~~I~~dt~l-----~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~ 118 (124)
+-+.+.+++..++.+++.- ..++++.+.+ .+++.||||+.++++..+|++|+|.||++...++.|++++++|+.
T Consensus 7 d~nav~~~i~g~~kkyl~~-~~~it~~skL~e~rt~e~r~wD~LDtVefvldVEe~F~V~IpDE~aDN~~tvqeIadfvv 85 (96)
T PF14573_consen 7 DINAVTEYILGMLKKYLSE-GEEITYTSKLEESRTKEDRAWDSLDTVEFVLDVEEEFDVTIPDETADNIKTVQEIADFVV 85 (96)
T ss_dssp -HHHHHHHHHHHHHTTB-T-T----TTS-GGGSBBTTSSB--HHHHHHHHHHHHHHHT----HHHHTT--SHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCC-CCccChhhhhHHhccccccccchhhhHHHHHhHHHHcCcccCccccchhhHHHHHHHHHH
Confidence 4567888888888887643 2345555554 578999999999999999999999999999999999999999997
Q ss_pred cC
Q 033233 119 NH 120 (124)
Q Consensus 119 ~~ 120 (124)
+.
T Consensus 86 ~~ 87 (96)
T PF14573_consen 86 QE 87 (96)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 21
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=98.79 E-value=3.4e-08 Score=61.56 Aligned_cols=74 Identities=27% Similarity=0.319 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCC-CCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 46 EEVIDRVLSVVKCFPKVDPSQ-VTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 46 ~ei~~~l~~il~e~l~v~~~~-I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
..+...+...+...++..... ++.+.+|. ++|+||+..+++...+++.||++++..++....|+..+++++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~~ 85 (86)
T smart00823 11 RLLLDLVREQVAAVLGHAAAEAIDPDRPFR-DLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAE 85 (86)
T ss_pred HHHHHHHHHHHHHHHCCCccccCCCCCCHH-HcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHHh
Confidence 456677888888887776655 48899996 899999999999999999999999999998999999999998764
No 22
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.77 E-value=1.8e-08 Score=97.25 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhC--CccChhhcccCccHHHHHHHHHcC
Q 033233 43 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFK--LEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fg--I~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
.+..++.+.+++++++.+|++.+.++++.+|.+|||+||++.+|++..++++|+ .+++++++.++.|++++++|+..+
T Consensus 1303 ~~~~~v~~~vl~vvae~tgyp~e~L~~d~~le~DLGiDSI~~vEil~~le~~f~~~~~i~~e~l~~l~Tl~div~~i~~~ 1382 (2582)
T TIGR02813 1303 TDLIQIQNVMLEVVADKTGYPTEMLELEMDMEADLGIDSIKRVEILGTVQDTLPDLPELSPEDLAECRTLGEIVSYMQSK 1382 (2582)
T ss_pred ccHHHHHHHHHHHHHHHhCCCHHHcCcccCchhhcCCCHHHHHHHHHHHHHhcCCcCCCChhHhhhcccHHHHHHHHhhc
Confidence 467899999999999999999999999999999999999999999999999999 899999999999999999999765
Q ss_pred C
Q 033233 121 P 121 (124)
Q Consensus 121 ~ 121 (124)
.
T Consensus 1383 ~ 1383 (2582)
T TIGR02813 1383 V 1383 (2582)
T ss_pred c
Confidence 4
No 23
>PRK06060 acyl-CoA synthetase; Validated
Probab=98.41 E-value=5.7e-07 Score=77.30 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhhcCCCC-CCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 46 EEVIDRVLSVVKCFPKVD-PSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 46 ~ei~~~l~~il~e~l~v~-~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
..+.+.|+..++++++.+ ++.++.+.+|. ++|+|||..+++...|++.||++++...+.+..|+.+++++|.+.+
T Consensus 544 ~~~~~~v~~~~a~vl~~~~~~~i~~~~~f~-~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~ 619 (705)
T PRK06060 544 RLVVDAVCAEAAKMLGEPDPWSVDQDLAFS-ELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAEL 619 (705)
T ss_pred HHHHHHHHHHHHHHhCCCChhhCCCCCChh-hcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHh
Confidence 345677888888899975 56799999997 9999999999999999999999999999999999999999997654
No 24
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.28 E-value=2.3e-06 Score=83.15 Aligned_cols=79 Identities=16% Similarity=0.309 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhC--CccChhhcccCccHHHHHHHHHcC
Q 033233 43 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFK--LEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fg--I~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
.+..++.+.+.+++++..|++.+.++++.++..|||+||+..+|++..++++|+ .+++++++.+++|++++++|+...
T Consensus 1207 ~~~~~~~~~~l~vvae~tgyp~e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~~~~e~~pe~l~~~rTl~~iv~~~~~~ 1286 (2582)
T TIGR02813 1207 VNDSAIQQVMMEVVAEKTGYPTEMLELEMDMEADLGIDSIKRVEILGSVQEIINDLPELNPEDLAELRTLGEIVNYMQSK 1286 (2582)
T ss_pred cchhHHHHHHHHHHHhhccCChHhcccccccccccCcchhhhHHhhhhhhhhccCCCCCChhhhcccccHHHHHHhhccc
Confidence 456789999999999999999999999999999999999999999999999998 788999999999999999999654
Q ss_pred C
Q 033233 121 P 121 (124)
Q Consensus 121 ~ 121 (124)
.
T Consensus 1287 ~ 1287 (2582)
T TIGR02813 1287 V 1287 (2582)
T ss_pred c
Confidence 4
No 25
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=98.24 E-value=2.6e-06 Score=78.10 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
..++.+.+.++++++++.+.+.++.+.+|+ ++|.|||.++++...|++.||+.++..++.+..|+.+++++|.+.
T Consensus 846 ~~~~~~~l~~~~~~vl~~~~~~i~~~~~ff-~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~ 920 (1389)
T TIGR03443 846 FTETEREIRDLWLELLPNRPATISPDDSFF-DLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRL 920 (1389)
T ss_pred CCHHHHHHHHHHHHHhCCCccccCcCcchh-hcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhh
Confidence 346778899999999998877899999998 999999999999999999999999999999999999999998643
No 26
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.11 E-value=8.6e-06 Score=73.88 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
..++.+.+.++++++++++ .++.+.+|+ ++|.|||.++++...|++.||+.++..++....|+++++++|.+.
T Consensus 976 ~~~~e~~l~~~~~~~l~~~--~~~~~~~ff-~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~ 1048 (1296)
T PRK10252 976 KTGTETIIAAAFSSLLGCD--VVDADADFF-ALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAE 1048 (1296)
T ss_pred CCHHHHHHHHHHHHHhCCC--CCCCCcCHH-HcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhcc
Confidence 3467788999999999986 689999997 999999999999999999999999999999999999999999765
No 27
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.93 E-value=1.9e-05 Score=50.52 Aligned_cols=69 Identities=9% Similarity=0.054 Sum_probs=57.8
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCCC
Q 033233 52 VLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPM 122 (124)
Q Consensus 52 l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~~ 122 (124)
+.+.+.+.++.++++++++.++. +.|+||+-+|.++....+ -|..|++.++....|++..-+.+..+..
T Consensus 3 Lr~~~~~Ll~e~~~~l~dqeNLi-~~GLDSiR~M~L~~~wR~-~G~~i~F~~La~~PTl~aW~qLl~~~~~ 71 (74)
T COG3433 3 LREQIAELLGESVEELDDQENLI-DYGLDSIRMMALLERWRK-RGADIDFAQLAANPTLAAWWQLLSTRSK 71 (74)
T ss_pred HHHHHHHHHcCChhhcCchhhHH-HhchhHHHHHHHHHHHHH-cCCcccHHHHHhCccHHHHHHHHHhccc
Confidence 34555556666888999999997 999999999999998865 4888999999999999999998876654
No 28
>PRK12467 peptide synthase; Provisional
Probab=97.92 E-value=2.5e-05 Score=78.40 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHc
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYN 119 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~ 119 (124)
..++.+.+.+++++++|++ .+..+.+|+ ++|.|||.+++++..+++.||++++..++.+..|++++++++..
T Consensus 3603 ~~~~e~~l~~i~~~vL~~~--~i~~~d~Ff-~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3603 RSEVEQQLAAIWADVLGVE--QVGVTDNFF-ELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred CCHHHHHHHHHHHHHhCCC--CCCCCcchh-cccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence 4577889999999999985 589999998 99999999999999999999999999999999999999999965
No 29
>PRK12467 peptide synthase; Provisional
Probab=97.86 E-value=3.4e-05 Score=77.39 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
..++.+.+.+++++++|++ .+..+.+|+ ++|.|||.+++++..++++||+.++..++.+..|++++++++...
T Consensus 1028 ~~~~e~~l~~i~~~vL~~~--~i~~~d~Ff-~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~~~~ 1100 (3956)
T PRK12467 1028 QTELEKRLAAIWADVLKVE--RVGLTDNFF-ELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAVAAQ 1100 (3956)
T ss_pred CCHHHHHHHHHHHHHhCCC--CCCCCCCch-hccCccHHHHHHHHHHHHHhCCCcchHHhhccchHHHHHHHhhhh
Confidence 4467888999999999874 689999998 999999999999999999999999999999999999999998653
No 30
>PRK12316 peptide synthase; Provisional
Probab=97.85 E-value=4.3e-05 Score=78.03 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
..++...+.++++++++++ .|..+.+|+ ++|.|||.++.|+..|+++||++++..++....|+++|++++...
T Consensus 5070 ~~~~e~~l~~i~~~vL~~~--~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~~ 5142 (5163)
T PRK12316 5070 RSELEQQVAAIWAEVLQLE--RVGLDDNFF-ELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFVELAAAA 5142 (5163)
T ss_pred CcHHHHHHHHHHHHHhCCC--CCCCCCChh-hccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHHHHHHHHHhc
Confidence 4567889999999999874 588999997 999999999999999999999999999999999999999999654
No 31
>PRK05691 peptide synthase; Validated
Probab=97.80 E-value=6e-05 Score=76.11 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHc
Q 033233 44 TKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYN 119 (124)
Q Consensus 44 ~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~ 119 (124)
.+.++...|.++++++++++ .+..+.+|+ ++|.|||.++.++..+++.||++++..++.+..|+.+++++|..
T Consensus 4238 p~~~~e~~l~~iw~~vL~~~--~i~~~d~Ff-~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~ 4310 (4334)
T PRK05691 4238 PRNELEQTLATIWADVLKVE--RVGVHDNFF-ELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEG 4310 (4334)
T ss_pred CCCHHHHHHHHHHHHHhCCC--cCCCCCchh-hcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhh
Confidence 35688899999999999974 589999998 99999999999999999999999999999999999999999964
No 32
>PRK05691 peptide synthase; Validated
Probab=97.76 E-value=6.1e-05 Score=76.05 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 42 HLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 42 ~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
.....++.+.+.++++++++++ .+..+.+|+ ++|.|||.+++++..++++||+.++..++.+..|++++++++..+
T Consensus 581 ~~~~~~~e~~l~~~~~~vL~~~--~i~~~~~ff-~lGgdSL~a~~l~~~l~~~~g~~l~v~~i~~~~ti~~la~~l~~~ 656 (4334)
T PRK05691 581 AASGDELQARIAAIWCEQLKVE--QVAADDHFF-LLGGNSIAATQVVARLRDELGIDLNLRQLFEAPTLAAFSAAVARQ 656 (4334)
T ss_pred cCCcchHHHHHHHHHHHHhCCC--CCCcCCchh-hcccchHHHHHHHHHHHHHhCCcCchhhhhcccchHHHHHHHHHh
Confidence 3445678889999999999974 689999997 999999999999999999999999999999999999999998654
No 33
>PRK12316 peptide synthase; Provisional
Probab=97.70 E-value=7.5e-05 Score=76.38 Aligned_cols=73 Identities=23% Similarity=0.288 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
..++.+.+.++++++++++ .+..+.+|+ +||.|||.+++++..++++||+.++..++.+..|+++++..+...
T Consensus 2514 ~~~~e~~l~~iw~~vL~~~--~i~~~d~Ff-~lGgdSl~a~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~l~~~ 2586 (5163)
T PRK12316 2514 QEGLEQRLAAIWQAVLKVE--QVGLDDHFF-ELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLESG 2586 (5163)
T ss_pred CCHHHHHHHHHHHHHhCCC--ccCCCCchh-hhcchHHHHHHHHHHHHHHhCCCcCHHHHhhCccHHHHhhhhhhh
Confidence 4567788999999999984 588999997 999999999999999999999999999999999999999888643
No 34
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=97.54 E-value=0.00021 Score=49.02 Aligned_cols=59 Identities=24% Similarity=0.455 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhcCCC----CCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhc
Q 033233 46 EEVIDRVLSVVKCFPKV----DPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEA 104 (124)
Q Consensus 46 ~ei~~~l~~il~e~l~v----~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l 104 (124)
+++.++|.+.+.+..|. ....+++++++..+||++--++.+++....++|+|++..=++
T Consensus 2 ~~i~~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~Vd~~~f~~ 64 (111)
T PF07377_consen 2 DDIEQEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNVDLSDFDF 64 (111)
T ss_pred chHHHHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCCCcCccCH
Confidence 57888999999998886 578899999998899999999999999999999999765443
No 35
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=96.62 E-value=0.00095 Score=61.81 Aligned_cols=55 Identities=35% Similarity=0.504 Sum_probs=47.7
Q ss_pred HHHHHHhhcCCC-CCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhccc
Q 033233 51 RVLSVVKCFPKV-DPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVR 106 (124)
Q Consensus 51 ~l~~il~e~l~v-~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~ 106 (124)
.+.+.|+.++|+ |...++++++|. |||+|||+-+|+-..||++|++-+...++..
T Consensus 2008 dLiatiA~IlGlrD~~~vn~~asLa-DLGlDSLMsvEikQtLER~~dlVLS~qEiRq 2063 (2376)
T KOG1202|consen 2008 DLIATIAHILGLRDLKAVNDDASLA-DLGLDSLMSVEIKQTLEREFDLVLSAQEIRQ 2063 (2376)
T ss_pred cHHHHHHHHhcchhHhhccCCCchh-hccchhhhhHHHHHHHhhhhceeeeHHHHHH
Confidence 366677777886 577899999996 9999999999999999999999999888754
No 36
>PF10501 Ribosomal_L50: Ribosomal subunit 39S; InterPro: IPR018305 This entry represents the L50 protein from the mitochondrial 39S ribosomal subunit. L50 appears to be a secondary RNA-binding protein []. The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units []. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [].; GO: 0005739 mitochondrion
Probab=95.85 E-value=0.061 Score=36.83 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCC-CCCCCcccccCCCh-hhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHc
Q 033233 44 TKEEVIDRVLSVVKCFPKVDPSQV-TPDVHFQKDLGLDS-LDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYN 119 (124)
Q Consensus 44 ~~~ei~~~l~~il~e~l~v~~~~I-~~dt~l~~dLGlDS-L~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~ 119 (124)
..+++.+.+.+...+.++.+.... ..+..+. ++.++. -.-..|+.++.+.+|..||+..+..+.|++++++|+..
T Consensus 5 ~~e~l~~~i~e~~~e~~~~~~~~~~~~~~~~~-~~~l~D~~~KF~~lKrl~~~tGh~ipD~~L~~~~T~~dl~~~~~~ 81 (112)
T PF10501_consen 5 PPEDLEEIIEESAKEVLGAEGFGSQSWNNDWL-DISLEDLQLKFAFLKRLQQLTGHRIPDSKLHSIHTVGDLLNFYEK 81 (112)
T ss_pred CHHHHHHHHHHHHHHHhcccccccccCCcccc-ccccCCHHHHHHHHHHHHHHHCCCCCcHHHHhcCCHHHHHHHHHH
Confidence 467888888888888888654333 2344442 444544 35678999999999999999999999999999999943
No 37
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=94.78 E-value=0.12 Score=42.12 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCC---------CCCCCCCCCc-ccccCCChhhHHHHHHHHHHHhCCc-cChhh-cccCccH
Q 033233 43 LTKEEVIDRVLSVVKCFPKVD---------PSQVTPDVHF-QKDLGLDSLDNVEIVMALEEEFKLE-IPDKE-AVRIDAC 110 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l~v~---------~~~I~~dt~l-~~dLGlDSL~~veli~~lEe~fgI~-I~~~~-l~~~~Tv 110 (124)
.+.+.|...+..+|...+.-- ...+..|+.+ .+.+|+|||..++|+.++-+-|++. -..++ +....++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (386)
T TIGR02372 3 LDAEAVGRLLVSLIAAEQQEGRVQHHQMPEARLLTADLRIDEETLGLDSLLRLSLVTAVAGFFHLSDTGTEDYLLVRRRI 82 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCcccCchhhhcccccccccccccccHHHHHHHHHHHHHHhcccccchhhhhhhhccH
Confidence 367788888888887764422 2237777877 5689999999999999999999994 23334 3456899
Q ss_pred HHHHHHHHcCC
Q 033233 111 NLAIEYIYNHP 121 (124)
Q Consensus 111 ~dlv~~I~~~~ 121 (124)
++.++.|.+..
T Consensus 83 ~~~~~~~~~~~ 93 (386)
T TIGR02372 83 GEWVDLIAHHS 93 (386)
T ss_pred HHHHHHHHhcC
Confidence 99999987553
No 38
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.14 E-value=0.77 Score=42.46 Aligned_cols=54 Identities=24% Similarity=0.178 Sum_probs=47.8
Q ss_pred CCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHc
Q 033233 65 SQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYN 119 (124)
Q Consensus 65 ~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~ 119 (124)
..++++++|+ ++|.||+.++-++..+...+.++.|..-.....|+..+..-+..
T Consensus 614 ~~~s~d~~fF-~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~ 667 (1032)
T KOG1178|consen 614 AIVSPDSSFF-QLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIR 667 (1032)
T ss_pred cccCCCcchh-hhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhh
Confidence 4678999998 99999999999999999999999999998888888888765543
No 39
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=78.77 E-value=6.8 Score=23.07 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=16.5
Q ss_pred CCChhhHHHHHHHHHHHhCCccChh
Q 033233 78 GLDSLDNVEIVMALEEEFKLEIPDK 102 (124)
Q Consensus 78 GlDSL~~veli~~lEe~fgI~I~~~ 102 (124)
+++++..=++...||++||+++...
T Consensus 17 dl~~vT~k~vr~~Le~~~~~dL~~~ 41 (54)
T PF08766_consen 17 DLDTVTKKQVREQLEERFGVDLSSR 41 (54)
T ss_dssp -GGG--HHHHHHHHHHH-SS--SHH
T ss_pred CHhHhhHHHHHHHHHHHHCCCcHHH
Confidence 5678889999999999999998744
No 40
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=71.83 E-value=8.1 Score=33.50 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=56.8
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhC-CccChhhcccCccHHHHHHHHHcCC
Q 033233 49 IDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFK-LEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 49 ~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fg-I~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
.+.++.+...++.- .-+++.+++|+ .-|..|.+.+.|+.++.+..| .++..+++-.-.|+++.++.+.+++
T Consensus 324 ~~~~~~iw~~il~k-v~~v~~~tdff-~sga~s~dv~rlveeik~~~~g~ele~~~iy~~~t~g~~i~~~ir~l 395 (881)
T KOG2452|consen 324 AEAVRSVWQRILPK-VLEVEDSTDFF-KSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKL 395 (881)
T ss_pred HHHHHHHHHHhcch-heeecccchHh-hcCccchhHHHHHHHHHHhCCcceeccCceEeccchhhHHHHHHHHh
Confidence 45566666655431 23578899998 889999999999999998887 8898888888899999999887665
No 41
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=71.81 E-value=7.8 Score=24.52 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHhhc--CC-CCCCCCCCCCCcccccCCChhhHHHHHHHHHHHh
Q 033233 41 DHLTKEEVIDRVLSVVKCF--PK-VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEF 95 (124)
Q Consensus 41 ~~M~~~ei~~~l~~il~e~--l~-v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~f 95 (124)
..+++.++...+++.|.+. .+ -+...+..|..|.+-+|-|++.+.++...|...|
T Consensus 18 ~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~~~~v~~~~~~~ll~~Hl 75 (77)
T smart00151 18 PEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGKDRMDMFEMNKLLTPHL 75 (77)
T ss_pred CcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHCcCeecHHHHHHHHHHHc
Confidence 6689999999999999964 22 1234477787777778888998888888887665
No 42
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=63.85 E-value=35 Score=22.97 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhcCCCC---------CCCCCCCCCc---c-cccCCChhhHHHHHHHHHHHhCCccChhhc
Q 033233 47 EVIDRVLSVVKCFPKVD---------PSQVTPDVHF---Q-KDLGLDSLDNVEIVMALEEEFKLEIPDKEA 104 (124)
Q Consensus 47 ei~~~l~~il~e~l~v~---------~~~I~~dt~l---~-~dLGlDSL~~veli~~lEe~fgI~I~~~~l 104 (124)
++..+++..+.+..|+. .++-++++++ . -.-|..-++++++...|++-||++++--.-
T Consensus 9 ~~lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~~~ll~~~~l~~~L~~llg~~VDL~t~ 79 (97)
T COG1669 9 KILRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDILVEFEPGKTLLDLVRLEDELSDLLGRKVDLVTK 79 (97)
T ss_pred HHHHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeEEeecCCccHHHHHHHHHHHHHHhCCeeeeecc
Confidence 34666777777655542 4556666665 1 144689999999999999999999865433
No 43
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=46.81 E-value=48 Score=20.66 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=20.9
Q ss_pred HHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 88 VMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 88 i~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
+..+++.||++++.+ +..|++.++-....+
T Consensus 16 l~~l~~~~~~~l~~~---~~~Tl~G~i~~~l~~ 45 (81)
T PF03471_consen 16 LDDLNELLGLDLPEE---DYDTLGGLILEQLGR 45 (81)
T ss_dssp HHHHHHHHTS-TTTT---TTSBHHHHHHHHHTS
T ss_pred HHHHHHHHCcCCCcc---chhhHHHHHHHHcCC
Confidence 347889999999885 566998887554433
No 44
>PF13565 HTH_32: Homeodomain-like domain
Probab=46.67 E-value=49 Score=20.04 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCcc
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEI 99 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I 99 (124)
.+++.+.|.+++.+.. -...-+|...|+++||+.+
T Consensus 32 ~~e~~~~i~~~~~~~p--------------------~wt~~~i~~~L~~~~g~~~ 66 (77)
T PF13565_consen 32 DPEQRERIIALIEEHP--------------------RWTPREIAEYLEEEFGISV 66 (77)
T ss_pred cHHHHHHHHHHHHhCC--------------------CCCHHHHHHHHHHHhCCCC
Confidence 3566688888877654 1245678888999999876
No 45
>PF00874 PRD: PRD domain; InterPro: IPR011608 Transcriptional antiterminators and activators containing phosphoenolpyruvate: sugar phosphotransferase system (PTS) regulation domains (PRDs) form a class of bacterial regulatory proteins whose activity is modulated by phosphorylation. These regulators stimulate the expression of genes and operons involved in carbohydrate metabolism. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria [, ] and are often characterised by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators, IPR004341 from INTERPRO) or DNA (for activators), and a duplicated PRD module which is phosphorylated on conserved histidines by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations are thought to modify the stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain [, , ]. PRDs are characterised by the presence of a duplicated regulatory module of ~100 residues that can be reversibly phosphorylated on histidyl residues by the PTS. PRDs in transcriptional antiterminators and activators are PTS regulatory targets that are (de)phosphorylated in response to the availability of carbon sources [, , , , ]. The PRD domain comprises one and often two highly conserved histidines. It forms a compact bundle comprising five helices (alpha1-alpha5). The core of the PRD module consists of two pairs of antiparallel helices making an angle of ~60 degrees. The first pair contains the antiparallel helices alpha1 and alpha4, while the second pair contains alpha2 and alpha5. The third helix (alpha3) is oriented perpendicularly to alpha5 at the periphery of the bundle. The helices are connected by loops of varying length [, , ].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1TLV_A 1H99_A 3GWH_A 3UFE_B 3RIO_A 3NUF_A.
Probab=39.20 E-value=30 Score=20.91 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHhCCccChhhc
Q 033233 83 DNVEIVMALEEEFKLEIPDKEA 104 (124)
Q Consensus 83 ~~veli~~lEe~fgI~I~~~~l 104 (124)
.+-++...+++.||+.++++++
T Consensus 58 ~a~~~~~~l~~~~~i~~~~~Ei 79 (89)
T PF00874_consen 58 IAKEICERLEKRYGITLPDDEI 79 (89)
T ss_dssp HHHHHHHHHHHHHTS-S-HHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHH
Confidence 4557888999999999999985
No 46
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=37.85 E-value=78 Score=20.46 Aligned_cols=38 Identities=8% Similarity=0.160 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHhCCccChhh-cccCccHHHHHHHHHcC
Q 033233 83 DNVEIVMALEEEFKLEIPDKE-AVRIDACNLAIEYIYNH 120 (124)
Q Consensus 83 ~~veli~~lEe~fgI~I~~~~-l~~~~Tv~dlv~~I~~~ 120 (124)
.--+|..+|.++||-+--.-- -.+-.|..+|++|+.++
T Consensus 19 t~~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~k 57 (77)
T TIGR03853 19 TRESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKK 57 (77)
T ss_pred CHHHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHC
Confidence 334555555666654332221 02234555666665544
No 47
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=37.67 E-value=79 Score=20.42 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhCCccChhh-cccCccHHHHHHHHHcC
Q 033233 83 DNVEIVMALEEEFKLEIPDKE-AVRIDACNLAIEYIYNH 120 (124)
Q Consensus 83 ~~veli~~lEe~fgI~I~~~~-l~~~~Tv~dlv~~I~~~ 120 (124)
..-+|..++.++||-+--.-- =.+-.|..+|++|+.++
T Consensus 21 t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~r 59 (78)
T PF10678_consen 21 TKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEER 59 (78)
T ss_pred CHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHc
Confidence 344555555555655432211 01234555556555544
No 48
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=37.39 E-value=3.7 Score=25.97 Aligned_cols=52 Identities=27% Similarity=0.321 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHhhcCCC---CCCCCCCCCCcccccCCChhhHHHHHHHHHHH
Q 033233 43 LTKEEVIDRVLSVVKCFPKV---DPSQVTPDVHFQKDLGLDSLDNVEIVMALEEE 94 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l~v---~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~ 94 (124)
+++.++...|++.|.+.-=. +...|..|..|..-+|-|++.+.++...+...
T Consensus 20 ~sr~~v~~~lw~YIk~~~L~dp~~k~~I~cD~~L~~lf~~~~v~~~~i~~~l~~h 74 (76)
T PF02201_consen 20 LSRSEVVKRLWQYIKENNLQDPKDKRIIICDEKLKKLFGKDSVNFFEIPKLLKPH 74 (76)
T ss_dssp EEHHHHHHHHHHHHHHTTSBESSSTTEEE-TTSHHHHHHTSECSEEETTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCcccCceEecCHHHHHHhCCCeecHhhHHHHHHHh
Confidence 79999999999999986222 34457778888767777887666655555443
No 49
>PF12117 DUF3580: Protein of unknown function (DUF3580); InterPro: IPR021972 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This domain is found in the parvovirus NS1 protein and is about 120 amino acids in length. It is located immediately C-terminal to the helicase domain and its function is not known.
Probab=35.68 E-value=86 Score=21.70 Aligned_cols=48 Identities=15% Similarity=0.030 Sum_probs=31.3
Q ss_pred hcccccccccccccccccchhhhhccccCCCCCCCHHHHHHHHHHHHhhc
Q 033233 10 HVRVPVQTLALTGSKQRWSVLGSLRFMSSHDDHLTKEEVIDRVLSVVKCF 59 (124)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~~ei~~~l~~il~e~ 59 (124)
|--+|=+|.+-+++.+..-.++... +.....=+-.||...|+.++.+.
T Consensus 60 PWStP~TPv~~ta~~q~t~~~~~~~--q~~q~SPTWSEIEaDlRAcF~~e 107 (120)
T PF12117_consen 60 PWSTPNTPVAETANTQNTGEGGTHA--QDAQASPTWSEIEADLRACFSSE 107 (120)
T ss_pred CcCCCCCcccccccccCCCCCcccc--cccccCCcHHHHHHHHHHHhchh
Confidence 4445666677777777776666655 12222337889999999988764
No 50
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=30.10 E-value=35 Score=22.00 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=11.9
Q ss_pred HHHHHHHHHhCCccChhh
Q 033233 86 EIVMALEEEFKLEIPDKE 103 (124)
Q Consensus 86 eli~~lEe~fgI~I~~~~ 103 (124)
+=+..+|+++|+.+|.+-
T Consensus 5 ~~I~~~E~~lg~~LP~~y 22 (130)
T PF09346_consen 5 EEIQELEEKLGVRLPDDY 22 (130)
T ss_dssp HHHHHHHHHHTS---HHH
T ss_pred HHHHHHHHHhCCCCcHHH
Confidence 346789999999999863
No 51
>PRK00157 rplL 50S ribosomal protein L7/L12; Reviewed
Probab=28.58 E-value=54 Score=23.02 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=17.1
Q ss_pred CChhhHHHHHHHHHHHhCCcc
Q 033233 79 LDSLDNVEIVMALEEEFKLEI 99 (124)
Q Consensus 79 lDSL~~veli~~lEe~fgI~I 99 (124)
+.=+.+.+|+..||++|||.-
T Consensus 15 LtllE~~eLv~~lee~fgv~a 35 (123)
T PRK00157 15 MTVLELSELVKALEEKFGVSA 35 (123)
T ss_pred CCHHHHHHHHHHHHHHcCCCc
Confidence 344578899999999999974
No 52
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.55 E-value=5.7 Score=31.27 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=28.0
Q ss_pred cccccCCChhhHHHHHHHHHHHhCCccChhhcccCc
Q 033233 73 FQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRID 108 (124)
Q Consensus 73 l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~ 108 (124)
|...=.-|-|..-+|...||++|++.||.....++.
T Consensus 199 LAKHRKsdtlEvrDIqLhLEr~~Nm~iPgf~sd~~~ 234 (258)
T KOG1142|consen 199 LAKHRKSDTVEVRDIQLHLERNFNMEIPGFSSDEKR 234 (258)
T ss_pred HHHhcccCccchhheeeeeeccccccCCCccccccc
Confidence 433456677888899999999999999887765544
No 53
>TIGR00855 L12 ribosomal protein L7/L12. THis model resembles Pfam model pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus.
Probab=27.88 E-value=55 Score=23.07 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=17.6
Q ss_pred CCChhhHHHHHHHHHHHhCCcc
Q 033233 78 GLDSLDNVEIVMALEEEFKLEI 99 (124)
Q Consensus 78 GlDSL~~veli~~lEe~fgI~I 99 (124)
++.=+.+.+|+..||++|||.-
T Consensus 15 ~LTllE~~eLv~~lee~fgV~a 36 (126)
T TIGR00855 15 EMTVLELSELVKALEEKFGVSA 36 (126)
T ss_pred hCCHHHHHHHHHHHHHhcCCCc
Confidence 3444678899999999999974
No 54
>PF13592 HTH_33: Winged helix-turn helix
Probab=27.00 E-value=51 Score=19.56 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHhCCccChhh
Q 033233 83 DNVEIVMALEEEFKLEIPDKE 103 (124)
Q Consensus 83 ~~veli~~lEe~fgI~I~~~~ 103 (124)
..-+|...|+++|||.+...-
T Consensus 6 t~~~i~~~I~~~fgv~ys~~~ 26 (60)
T PF13592_consen 6 TLKEIAAYIEEEFGVKYSPSG 26 (60)
T ss_pred cHHHHHHHHHHHHCCEEcHHH
Confidence 345788899999999986553
No 55
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=25.96 E-value=61 Score=20.15 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCCccChhh
Q 033233 86 EIVMALEEEFKLEIPDKE 103 (124)
Q Consensus 86 eli~~lEe~fgI~I~~~~ 103 (124)
+-+..+|+++|+.+|.+-
T Consensus 5 ~~i~~~e~~lg~~LP~~y 22 (129)
T smart00860 5 EEIAELEKKLGIKLPEDY 22 (129)
T ss_pred HHHHHHHHHHCCCCCHHH
Confidence 457789999999999874
No 56
>PF03816 LytR_cpsA_psr: Cell envelope-related transcriptional attenuator domain; InterPro: IPR004474 This entry describes a domain of unknown function that is found in the predicted extracellular domain of a number of putative membrane-bound proteins. One of these is protein psr, described as a penicillin binding protein 5 (PDP-5) synthesis repressor. Another is Bacillus subtilis LytR, described as a transcriptional attenuator of itself and the LytABC operon, where LytC is N-acetylmuramoyl-L-alanine amidase. A third is CpsA, a putative regulatory protein involved in exocellular polysaccharide biosynthesis. These proteins share the property of having a short putative N-terminal cytoplasmic domain and transmembrane domain forming a signal-anchor.; PDB: 3PE5_B 3QFI_A 3NRO_B 3OKZ_B 3OWQ_C 3MEJ_A 4DE9_A 3TEP_A 3TEL_A 3TFL_A ....
Probab=24.38 E-value=47 Score=23.36 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhCCccChhhcccCccHHHHHHHH
Q 033233 84 NVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 117 (124)
Q Consensus 84 ~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I 117 (124)
.-.+..++|+.||+.|+.--.-++..+.++++.+
T Consensus 50 ~~~~~~~v~~l~gv~Id~yv~i~~~~f~~lvD~l 83 (149)
T PF03816_consen 50 AEALIKAVEELLGVPIDYYVVIDFEGFSKLVDAL 83 (149)
T ss_dssp HHHHHHHHHHHHTS---EEEEEEHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCCCeEEEEeHHHHHHHHHhh
Confidence 4456677888888877665556667777777665
No 57
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=24.16 E-value=97 Score=18.05 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=21.1
Q ss_pred cccCCChhhHHHHHHHHHHHhCCccC
Q 033233 75 KDLGLDSLDNVEIVMALEEEFKLEIP 100 (124)
Q Consensus 75 ~dLGlDSL~~veli~~lEe~fgI~I~ 100 (124)
+.+|+.-=.+-.-+..||+.||+.+=
T Consensus 21 ~~l~is~~~vs~~i~~LE~~lg~~Lf 46 (60)
T PF00126_consen 21 EELGISQSAVSRQIKQLEEELGVPLF 46 (60)
T ss_dssp HHCTSSHHHHHHHHHHHHHHHTS-SE
T ss_pred HHhhccchHHHHHHHHHHHHhCCeEE
Confidence 46778888888999999999999873
No 58
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=23.75 E-value=1.8e+02 Score=20.94 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccC----hhh-cccCccHHHHHHHH
Q 033233 43 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIP----DKE-AVRIDACNLAIEYI 117 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~----~~~-l~~~~Tv~dlv~~I 117 (124)
||+++-.+++...+..... + +.-+++...++.|+-... +++ ..++.|++++++.+
T Consensus 1 M~k~efL~~L~~~L~~lp~---~-----------------e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i 60 (181)
T PF08006_consen 1 MNKNEFLNELEKYLKKLPE---E-----------------EREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREI 60 (181)
T ss_pred CCHHHHHHHHHHHHHcCCH---H-----------------HHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHH
Confidence 6777777777776654221 1 233455555666654432 233 45566666666555
Q ss_pred H
Q 033233 118 Y 118 (124)
Q Consensus 118 ~ 118 (124)
.
T Consensus 61 ~ 61 (181)
T PF08006_consen 61 L 61 (181)
T ss_pred H
Confidence 4
No 59
>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.
Probab=23.45 E-value=64 Score=20.80 Aligned_cols=16 Identities=13% Similarity=0.432 Sum_probs=11.0
Q ss_pred HHHHHHHHhCCccChh
Q 033233 87 IVMALEEEFKLEIPDK 102 (124)
Q Consensus 87 li~~lEe~fgI~I~~~ 102 (124)
-+..+|+++|+++|.+
T Consensus 3 ~I~~~E~~Lg~~lP~~ 18 (120)
T PF14568_consen 3 EIEEAEKKLGVKLPED 18 (120)
T ss_dssp HHHHHHHHHTS---HH
T ss_pred HHHHHHHHhCCCCCHH
Confidence 4678999999999986
No 60
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=23.25 E-value=39 Score=24.25 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.4
Q ss_pred ccCCChhhHHHHHHHHHHHhCCcc
Q 033233 76 DLGLDSLDNVEIVMALEEEFKLEI 99 (124)
Q Consensus 76 dLGlDSL~~veli~~lEe~fgI~I 99 (124)
..|-||+.++.++..+...+++++
T Consensus 7 SGG~DS~~Ll~~l~~~~~~~~~~~ 30 (182)
T PF01171_consen 7 SGGKDSMALLHLLKELRRRNGIKL 30 (182)
T ss_dssp -SSHHHHHHHHHHHHHHTTTTTEE
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCe
Confidence 359999999999999999888854
No 61
>PF06755 DUF1219: Protein of unknown function (DUF1219); InterPro: IPR009610 This family consists of several hypothetical proteins which seem to be specific to the enterobacteria Escherichia coli and Shigella flexneri. Family members are often known as YeeV proteins and are around 125 residues in length. The function of this family is unknown.
Probab=22.95 E-value=74 Score=22.04 Aligned_cols=10 Identities=10% Similarity=0.232 Sum_probs=4.1
Q ss_pred cHHHHHHHHH
Q 033233 109 ACNLAIEYIY 118 (124)
Q Consensus 109 Tv~dlv~~I~ 118 (124)
|+.+.++++.
T Consensus 58 s~~~AVN~LV 67 (114)
T PF06755_consen 58 SPADAVNFLV 67 (114)
T ss_pred CHHHHHHHHH
Confidence 3334444443
No 62
>COG0222 RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]
Probab=22.88 E-value=78 Score=22.29 Aligned_cols=18 Identities=44% Similarity=0.606 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHhCCcc
Q 033233 82 LDNVEIVMALEEEFKLEI 99 (124)
Q Consensus 82 L~~veli~~lEe~fgI~I 99 (124)
|.+.+|+..+|+.|||.=
T Consensus 18 lel~eLvk~~eekfgVsa 35 (124)
T COG0222 18 LELSELVKALEEKFGVTA 35 (124)
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 467789999999999973
No 63
>CHL00083 rpl12 ribosomal protein L12
Probab=21.44 E-value=86 Score=22.21 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=17.4
Q ss_pred CChhhHHHHHHHHHHHhCCccC
Q 033233 79 LDSLDNVEIVMALEEEFKLEIP 100 (124)
Q Consensus 79 lDSL~~veli~~lEe~fgI~I~ 100 (124)
+.=+.+.+|+..||++|||.-.
T Consensus 15 LTllE~~eLv~~le~~fgv~~~ 36 (131)
T CHL00083 15 LTLLEAAELVKQIEETFGVDAS 36 (131)
T ss_pred CCHHHHHHHHHHHHHHcCCCcc
Confidence 3445788999999999999643
No 64
>PF10045 DUF2280: Uncharacterized conserved protein (DUF2280); InterPro: IPR018738 This entry is represented by Burkholderia phage Bups phi1, Orf2.36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.54 E-value=78 Score=21.63 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCccChhhcc
Q 033233 85 VEIVMALEEEFKLEIPDKEAV 105 (124)
Q Consensus 85 veli~~lEe~fgI~I~~~~l~ 105 (124)
-+.+.++.++||++++.....
T Consensus 23 s~v~~aVk~eFgi~vsrQqve 43 (104)
T PF10045_consen 23 SEVAEAVKEEFGIDVSRQQVE 43 (104)
T ss_pred HHHHHHHHHHhCCccCHHHHH
Confidence 467889999999999887653
No 65
>TIGR00350 lytR_cpsA_psr cell envelope-related function transcriptional attenuator common domain. This model describes a domain of unknown function that is found in the predicted extracellular domain of a number of putative membrane-bound proteins. One of these is proteins psr, described as a penicillin binding protein 5 (PDP-5) synthesis repressor. Another is Bacillus subtilis LytR, described as a transcriptional attenuator of itself and the LytABC operon, where LytC is N-acetylmuramoyl-L-alanine amidase. A third is CpsA, a putative regulatory protein involved in exocellular polysaccharide biosynthesis. Besides the region of strong similarily represented by this model, these proteins share the property of having a short putative N-terminal cytoplasmic domain and transmembrane domain forming a signal-anchor.
Probab=20.06 E-value=67 Score=22.82 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCccChhhcccCccHHHHHHHH
Q 033233 86 EIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 117 (124)
Q Consensus 86 eli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I 117 (124)
.++..+|+-||+.|+.--.-++..+.++++.+
T Consensus 54 ~~~~~V~~l~gi~Id~yv~v~~~~f~~lvD~l 85 (152)
T TIGR00350 54 CLVKTVENLLGVPIDRYVEVDFDGFEDVVDAL 85 (152)
T ss_pred HHHHHHHHHHCCCCcEEEEEcHHHHHHHHhcC
Confidence 57778888899887766666777777777665
Done!