Query 033233
Match_columns 124
No_of_seqs 223 out of 1122
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:57:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ejb_A Acyl carrier protein; p 99.8 3.3E-21 1.1E-25 128.5 6.3 94 28-121 3-96 (97)
2 2dnw_A Acyl carrier protein; A 99.8 9.8E-19 3.4E-23 116.3 10.4 84 40-123 8-91 (99)
3 2l4b_A Acyl carrier protein; i 99.8 7.4E-20 2.5E-24 118.9 4.4 84 41-124 2-88 (88)
4 2kci_A Putative acyl carrier p 99.8 1.8E-19 6.2E-24 118.4 6.0 75 47-121 2-76 (87)
5 2cnr_A FAS, ACP, acyl carrier 99.8 1.9E-18 6.5E-23 110.0 9.8 80 42-121 2-81 (82)
6 2lol_A ACP, acyl carrier prote 99.8 1.1E-18 3.6E-23 111.3 8.5 80 42-121 1-80 (81)
7 4dxe_H ACP, acyl carrier prote 99.8 3.6E-19 1.2E-23 119.7 6.3 80 42-121 21-100 (101)
8 2kwl_A ACP, acyl carrier prote 99.8 4.1E-19 1.4E-23 114.2 6.3 81 41-121 3-83 (84)
9 1f80_D Acyl carrier protein; t 99.8 2E-19 6.7E-24 114.7 4.4 80 41-120 1-80 (81)
10 3gzm_A Acyl carrier protein; h 99.8 4.1E-19 1.4E-23 113.7 5.9 79 44-122 2-80 (81)
11 2kjs_A Putative acyl carrier p 99.8 4.7E-19 1.6E-23 116.3 4.9 74 49-122 4-77 (87)
12 3ce7_A Specific mitochodrial a 99.8 1.9E-18 6.4E-23 117.2 7.9 78 43-121 15-97 (107)
13 2l9f_A CALE8, meacp; transfera 99.8 1.1E-18 3.8E-23 117.6 6.4 76 46-122 13-90 (102)
14 1vku_A Acyl carrier protein; T 99.7 2.5E-18 8.5E-23 115.4 6.8 81 40-121 10-90 (100)
15 1klp_A ACP, ACPM, meromycolate 99.7 5.3E-18 1.8E-22 115.7 8.3 80 42-121 2-81 (115)
16 1x3o_A Acyl carrier protein; s 99.7 2.8E-18 9.4E-23 108.6 6.4 79 43-121 1-79 (80)
17 2cgq_A Acyl carrier protein AC 99.7 7.9E-18 2.7E-22 115.5 7.6 76 42-123 26-101 (113)
18 2ava_A ACP I, acyl carrier pro 99.7 6.7E-18 2.3E-22 107.8 6.3 78 44-122 1-79 (82)
19 2qnw_A Acyl carrier protein; m 99.7 4.8E-18 1.6E-22 108.8 5.6 78 44-121 4-81 (82)
20 2lki_A Putative uncharacterize 99.7 1.2E-17 4E-22 113.0 6.3 76 47-122 24-104 (105)
21 1af8_A Actinorhodin polyketide 99.7 4E-18 1.4E-22 110.0 3.5 78 43-121 1-82 (86)
22 1dv5_A APO-DCP, APO-D-alanyl c 99.7 1.9E-17 6.6E-22 106.2 6.6 76 45-121 2-80 (80)
23 1l0i_A Acyl carrier protein; a 99.7 3.1E-17 1.1E-21 103.7 6.6 75 47-121 3-77 (78)
24 2lte_A Specialized acyl carrie 99.5 2.2E-18 7.6E-23 116.2 0.0 80 42-123 22-101 (103)
25 2jq4_A AGR_C_4658P, hypothetic 99.7 3.7E-17 1.3E-21 110.3 5.1 84 36-120 11-98 (105)
26 2kw2_A Specialized acyl carrie 99.7 6.1E-17 2.1E-21 108.3 5.7 75 47-121 3-88 (101)
27 2amw_A Hypothetical protein NE 99.7 8.4E-17 2.9E-21 103.4 5.8 75 48-122 3-82 (83)
28 1or5_A Acyl carrier protein; A 99.7 3E-17 1E-21 105.1 3.3 76 47-123 4-82 (83)
29 2ehs_A ACP, acyl carrier prote 99.6 5.6E-16 1.9E-20 97.1 5.7 75 48-122 2-76 (77)
30 2l3v_A ACP, acyl carrier prote 99.6 5.8E-17 2E-21 102.5 1.1 75 47-121 4-78 (79)
31 1nq4_A Oxytetracycline polyket 99.6 8.3E-16 2.8E-20 101.7 5.9 79 42-121 3-81 (95)
32 1fh1_A NODF, nodulation protei 99.6 1.3E-16 4.3E-21 104.8 -0.6 76 47-123 4-90 (92)
33 2afd_A Protein ASL1650; twiste 99.6 1.5E-14 5.2E-19 92.4 8.0 80 41-121 8-87 (88)
34 2kr5_A PKS, aflatoxin biosynth 99.5 3.9E-14 1.3E-18 91.2 6.6 78 44-122 8-87 (89)
35 2liu_A CURA; holo state, trans 99.5 4.4E-14 1.5E-18 92.2 6.9 80 41-121 15-94 (99)
36 2l22_A Mupirocin didomain acyl 99.5 8.7E-14 3E-18 102.9 6.9 85 37-122 16-100 (212)
37 2ju1_A Erythronolide synthase; 99.4 1.7E-13 5.9E-18 89.1 4.7 77 44-121 17-94 (95)
38 2cg5_B Fatty acid synthase; tr 99.4 1E-12 3.6E-17 86.8 7.4 70 50-121 9-79 (91)
39 4i4d_A Peptide synthetase NRPS 99.4 1.6E-12 5.6E-17 85.0 6.7 75 45-122 14-88 (93)
40 1dny_A Non-ribosomal peptide s 99.3 3.4E-12 1.2E-16 83.4 6.6 73 46-121 13-85 (91)
41 2l22_A Mupirocin didomain acyl 99.3 3.4E-12 1.2E-16 94.3 6.9 78 43-121 126-203 (212)
42 3tej_A Enterobactin synthase c 98.9 3.3E-09 1.1E-13 82.0 6.8 73 46-121 10-82 (329)
43 2cq8_A 10-formyltetrahydrofola 98.9 2.6E-09 8.8E-14 72.7 5.3 73 45-120 23-97 (110)
44 2jgp_A Tyrocidine synthetase 3 98.6 9.7E-08 3.3E-12 77.3 7.2 73 45-120 8-80 (520)
45 2fq1_A Isochorismatase; ENTB, 98.6 1.2E-07 4E-12 73.1 7.1 67 50-119 218-284 (287)
46 2vsq_A Surfactin synthetase su 98.3 5.7E-07 1.9E-11 80.9 6.4 73 45-120 970-1042(1304)
47 4f6l_B AUSA reductase domain p 98.2 1.2E-07 4.3E-12 77.2 0.0 72 45-120 43-114 (508)
48 3rg2_A Enterobactin synthase c 98.1 6.1E-06 2.1E-10 68.6 7.0 70 49-121 547-616 (617)
49 4dg8_A PA1221; ANL superfamily 98.1 6.1E-07 2.1E-11 75.2 0.3 73 45-120 522-595 (620)
50 2vz8_A Fatty acid synthase; tr 97.3 3.9E-05 1.3E-09 73.5 0.0 69 49-119 2125-2194(2512)
51 2px6_A Thioesterase domain; th 91.6 0.033 1.1E-06 41.9 -0.1 37 78-114 1-37 (316)
52 1dd4_C 50S ribosomal protein L 80.4 1.6 5.6E-05 23.9 2.9 21 78-98 12-32 (40)
53 1zav_U 50S ribosomal protein L 73.4 2.6 8.7E-05 21.6 2.2 17 80-96 14-30 (30)
54 3zen_D Fatty acid synthase; tr 65.9 1.3 4.3E-05 44.0 0.0 54 48-102 1795-1849(3089)
55 1v32_A AT5G08430, hypothetical 64.4 4.1 0.00014 26.6 2.3 58 41-98 33-93 (101)
56 1q1v_A DEK protein; winged-hel 63.3 22 0.00075 21.4 6.0 46 40-103 9-55 (70)
57 1uhr_A SWI/SNF related, matrix 54.4 5.1 0.00017 25.6 1.4 56 41-96 25-83 (93)
58 1v31_A Hypothetical protein RA 49.4 4.2 0.00014 25.9 0.4 55 42-96 26-83 (93)
59 1wot_A Putative minimal nucleo 48.0 47 0.0016 20.5 5.9 62 40-102 1-78 (98)
60 2pls_A CBS domain protein; APC 43.2 48 0.0016 20.0 4.7 33 88-120 19-52 (86)
61 3ufe_A Transcriptional antiter 41.7 17 0.00059 22.5 2.5 21 84-104 79-99 (111)
62 2oai_A Hemolysin; PFAM03471, x 41.4 40 0.0014 20.9 4.2 33 88-120 28-60 (94)
63 3s93_A Tudor domain-containing 41.2 44 0.0015 21.5 4.4 18 43-60 3-20 (102)
64 3llb_A Uncharacterized protein 37.7 62 0.0021 19.4 4.5 29 89-120 20-48 (83)
65 2rk5_A Putative hemolysin; str 36.8 60 0.002 19.6 4.4 30 88-120 18-47 (87)
66 2p3h_A Uncharacterized CBS dom 36.5 60 0.002 20.6 4.5 30 88-120 22-51 (101)
67 3lae_A UPF0053 protein HI0107; 35.3 57 0.002 19.5 4.1 29 88-119 19-47 (81)
68 3ded_A Probable hemolysin; str 34.9 78 0.0027 20.4 4.9 33 88-120 45-79 (113)
69 2r2z_A Hemolysin; APC85144, en 32.6 76 0.0026 19.3 4.4 30 88-120 26-55 (93)
70 2pli_A Uncharacterized protein 32.4 79 0.0027 19.2 4.5 30 88-120 28-57 (91)
71 2p13_A CBS domain; alpha-beta 32.0 85 0.0029 19.0 4.5 32 88-120 25-56 (90)
72 2p4p_A Hypothetical protein HD 30.4 89 0.003 18.7 4.4 30 89-120 20-50 (86)
73 2zjq_5 50S ribosomal protein L 30.0 31 0.0011 23.2 2.3 21 79-99 15-35 (122)
74 2j01_L 50S ribosomal protein L 29.8 32 0.0011 23.3 2.3 21 79-99 15-35 (125)
75 2pag_A Hypothetical protein; n 28.5 32 0.0011 23.0 2.1 19 85-103 24-42 (135)
76 3rio_A PTSGHI operon antitermi 26.4 40 0.0014 23.4 2.5 21 84-104 147-167 (180)
77 2hfk_A Pikromycin, type I poly 26.3 2.4 8.2E-05 31.5 -4.3 44 40-96 21-64 (319)
78 3m20_A 4-oxalocrotonate tautom 25.0 52 0.0018 18.4 2.4 23 45-67 15-37 (62)
79 2ftc_E L12MT, MRP-L12, 39S rib 22.9 59 0.002 22.2 2.7 22 78-99 12-33 (137)
80 1nha_A TFIIF-alpha, transcript 22.9 80 0.0027 19.7 3.0 35 25-59 31-65 (82)
81 1dd3_A 50S ribosomal protein L 21.4 47 0.0016 22.5 1.9 21 78-98 12-32 (128)
82 2kxo_A Cell division topologic 21.0 56 0.0019 20.8 2.1 27 42-68 37-63 (95)
83 3abf_A 4-oxalocrotonate tautom 20.7 52 0.0018 18.1 1.8 22 45-66 17-38 (64)
84 3d5p_A Putative glucan synthes 20.1 58 0.002 21.5 2.2 18 85-102 17-34 (144)
No 1
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=99.84 E-value=3.3e-21 Score=128.51 Aligned_cols=94 Identities=38% Similarity=0.479 Sum_probs=75.8
Q ss_pred chhhhhccccCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccC
Q 033233 28 SVLGSLRFMSSHDDHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRI 107 (124)
Q Consensus 28 ~~~~~~~~~~~~~~~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~ 107 (124)
++.+|+|........++++++.++|++++++.+++++++|+++++|.++||+|||++++|+..||++|||+|+.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~t~~~i~~~l~~iia~~l~~~~~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~~l~~~ 82 (97)
T 3ejb_A 3 SHHHHHHSSGLVPRGSHMSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKI 82 (97)
T ss_dssp ---------------CCCCCHHHHHHHHHHHHSCCCTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCcCHHHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 35678888888888999999999999999999999999999999997799999999999999999999999999999999
Q ss_pred ccHHHHHHHHHcCC
Q 033233 108 DACNLAIEYIYNHP 121 (124)
Q Consensus 108 ~Tv~dlv~~I~~~~ 121 (124)
.|++++++||.+++
T Consensus 83 ~Tv~~l~~~i~~~~ 96 (97)
T 3ejb_A 83 TTVQAAIDYINGHQ 96 (97)
T ss_dssp CBHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998775
No 2
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.8e-19 Score=116.26 Aligned_cols=84 Identities=45% Similarity=0.705 Sum_probs=78.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHc
Q 033233 40 DDHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYN 119 (124)
Q Consensus 40 ~~~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~ 119 (124)
-++|+++++.+.|++++++.++++.++|+++++|..+||+|||++++|+..||++||++|+.+++.++.|++++++||.+
T Consensus 8 m~~m~~~~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~ 87 (99)
T 2dnw_A 8 MPPLTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIAD 87 (99)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTSCTTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCHhhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHH
Confidence 45799999999999999999999999999999996699999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 033233 120 HPMA 123 (124)
Q Consensus 120 ~~~a 123 (124)
++++
T Consensus 88 ~~~~ 91 (99)
T 2dnw_A 88 KKDV 91 (99)
T ss_dssp HCCS
T ss_pred Hhcc
Confidence 7643
No 3
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=99.78 E-value=7.4e-20 Score=118.90 Aligned_cols=84 Identities=29% Similarity=0.463 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHHhhcC---CCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHH
Q 033233 41 DHLTKEEVIDRVLSVVKCFP---KVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 117 (124)
Q Consensus 41 ~~M~~~ei~~~l~~il~e~l---~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I 117 (124)
..|+++++.++|++++++.+ +++.++|+++++|.+++|||||++++|+..||++||++|+.+++.++.|++++++||
T Consensus 2 ~~m~~~~i~~~v~~~i~~~l~~~~~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i~~~~~~~~~Tv~~l~~~i 81 (88)
T 2l4b_A 2 GSMVSEEIKAQVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDICRYI 81 (88)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTCCHHHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCHHHHHTCCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHH
Confidence 36899999999999999998 888889999999977999999999999999999999999999999999999999999
Q ss_pred HcCCCCC
Q 033233 118 YNHPMAS 124 (124)
Q Consensus 118 ~~~~~a~ 124 (124)
.++++++
T Consensus 82 ~~~~~~~ 88 (88)
T 2l4b_A 82 ASKSSDA 88 (88)
T ss_dssp HHHSSCC
T ss_pred HHhhccC
Confidence 9887653
No 4
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=99.78 E-value=1.8e-19 Score=118.43 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 47 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 47 ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
++.+++++++++.+++++++++++++|.+++|||||++++++++||++|||+||++++.++.|++++++||.+++
T Consensus 2 ~i~ekv~~il~e~l~~d~~~i~~d~~l~~dlg~DSL~~veli~~lE~eF~I~i~~ed~~~~~Tv~dlv~~I~~~~ 76 (87)
T 2kci_A 2 PTLDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKL 76 (87)
T ss_dssp CSHHHHHHHHHHHTTCSCCCCCTTCCSTTCCCCCSTHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999888999999999999999999999999999999999999999998654
No 5
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=99.78 E-value=1.9e-18 Score=110.02 Aligned_cols=80 Identities=33% Similarity=0.535 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 42 HLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 42 ~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
.|+++++.+++++++++.++++.++++++++|..++|+|||++++++..||++||++++.+++.++.|+++++++|.+++
T Consensus 2 ~m~~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 81 (82)
T 2cnr_A 2 AATQEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILDHQ 81 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCCTTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGGGGGTCSBHHHHHHHHHHSB
T ss_pred CCCHHHHHHHHHHHHHHHhCCCHHHCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHHHc
Confidence 48999999999999999999999999999999669999999999999999999999999999999999999999998775
No 6
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=99.77 E-value=1.1e-18 Score=111.27 Aligned_cols=80 Identities=35% Similarity=0.543 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 42 HLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 42 ~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
.|+++++.+++++++++.+++++++++++++|..++|+|||++++++..||++||++++.+++.++.|++++++|+.+++
T Consensus 1 Mm~~~~i~~~l~~ii~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 80 (81)
T 2lol_A 1 MSTTDKIEQKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTVSDVIKYIKERQ 80 (81)
T ss_dssp CCSHHHHHHHHHHHHHHHSCCCTTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCCCGGGGGGSSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHCCChhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHHhc
Confidence 47899999999999999999999999999999669999999999999999999999999999999999999999998764
No 7
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=99.77 E-value=3.6e-19 Score=119.74 Aligned_cols=80 Identities=40% Similarity=0.569 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 42 HLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 42 ~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
.|++.++.++|+++|++.+++++++|+++++|.++||||||++++|+..||++|||+|+.+++.++.|++++++||.++.
T Consensus 21 ~m~~mei~~~l~~iiae~l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~Tv~dl~~~I~~~~ 100 (101)
T 4dxe_H 21 QSNAMENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSLE 100 (101)
T ss_dssp ---CTTHHHHHHHHHHHTTCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCBHHHHHHHHC---
T ss_pred hcCHHHHHHHHHHHHHHHHCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHcc
Confidence 34455899999999999999999999999999779999999999999999999999999999999999999999998764
No 8
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=99.77 E-value=4.1e-19 Score=114.18 Aligned_cols=81 Identities=27% Similarity=0.457 Sum_probs=76.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 41 DHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 41 ~~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
+.|+++++.+++++++++.++++.++++++++|..++|+|||++++++..||++||++++.+++.++.|++++++||.++
T Consensus 3 ~~m~~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 82 (84)
T 2kwl_A 3 GSMDNDEIFSKVRSIISEQLDKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVVNFIKKR 82 (84)
T ss_dssp CCSTHHHHHHHHHHHHHHHHCCCGGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTTTTGGGGCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCcccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHH
Confidence 36999999999999999999999999999999966999999999999999999999999999999999999999999875
Q ss_pred C
Q 033233 121 P 121 (124)
Q Consensus 121 ~ 121 (124)
+
T Consensus 83 ~ 83 (84)
T 2kwl_A 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 9
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=99.77 E-value=2e-19 Score=114.68 Aligned_cols=80 Identities=38% Similarity=0.603 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 41 DHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 41 ~~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
++|+++++.+++++++++.++++.++++++++|..++|+|||++++++..||++||++++.+++.++.|++++++||.++
T Consensus 1 ~~m~~~~i~~~l~~~l~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 80 (81)
T 1f80_D 1 GPLGSADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQNQ 80 (81)
T ss_dssp ----CCHHHHHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHCC--
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccCHHHHHHCCCHHHHHHHHHhh
Confidence 46899999999999999999999999999999955999999999999999999999999999999999999999999765
No 10
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=99.77 E-value=4.1e-19 Score=113.70 Aligned_cols=79 Identities=34% Similarity=0.577 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCCC
Q 033233 44 TKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPM 122 (124)
Q Consensus 44 ~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~~ 122 (124)
+++++.++|++++++.+++++++++++++|.++||||||++++++..||++||++|+.+++.++.|++++++||.++++
T Consensus 2 ~~~~i~~~l~~ii~~~l~~~~~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~ 80 (81)
T 3gzm_A 2 SLKSTFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKNNK 80 (81)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHhCcCHHHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHHhc
Confidence 4679999999999999999999999999996699999999999999999999999999999999999999999988764
No 11
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=99.76 E-value=4.7e-19 Score=116.28 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=70.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCCC
Q 033233 49 IDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPM 122 (124)
Q Consensus 49 ~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~~ 122 (124)
.+++++++++.++++...|+++++|.+++|||||+.++++..||++|||+|+.+++.++.||+++++||.++++
T Consensus 4 le~l~~I~~e~l~~d~~~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i~~~~l~~~~TV~dl~~~I~~kl~ 77 (87)
T 2kjs_A 4 LDALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKLA 77 (87)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccccCCCCCcccCCCCChHHHHHHHHHHHHHhCceecHHHHHcCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999998779999999999999999999999999999999999999999988764
No 12
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=99.76 E-value=1.9e-18 Score=117.24 Aligned_cols=78 Identities=23% Similarity=0.405 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcc-----cccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHH
Q 033233 43 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQ-----KDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 117 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~-----~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I 117 (124)
|+.++|.++|+++|++.++ +.++|+++++|. ++||||||++++|+..||++|||+|+++++.++.|++++++||
T Consensus 15 ~~~~~i~~~i~~il~e~l~-~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~~~~~~~Tv~~l~~~i 93 (107)
T 3ce7_A 15 TDINAVTNYIVGMCQKFLQ-KGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIADFV 93 (107)
T ss_dssp TCHHHHHHHHHHHHHTTBC-TTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhC-CccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHhcCCHHHHHHHH
Confidence 7899999999999999999 889999999996 7999999999999999999999999999999999999999999
Q ss_pred HcCC
Q 033233 118 YNHP 121 (124)
Q Consensus 118 ~~~~ 121 (124)
.+++
T Consensus 94 ~~~~ 97 (107)
T 3ce7_A 94 VSER 97 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 13
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=99.75 E-value=1.1e-18 Score=117.63 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccC--ccHHHHHHHHHcCCC
Q 033233 46 EEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRI--DACNLAIEYIYNHPM 122 (124)
Q Consensus 46 ~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~--~Tv~dlv~~I~~~~~ 122 (124)
.+|.++|++++++.++++.+.++++++|.+|||+|||++++|++.+|++||++||.+ ..++ .||+++++||.++.+
T Consensus 13 ~~I~~~V~~ilaE~lev~~e~Vtpda~l~dDLglDSLd~VeLVm~lE~~fGi~ipd~-~e~~~~~TV~d~vdyI~~~~~ 90 (102)
T 2l9f_A 13 TGALELVRHLVAERAELPVEVLRDDSRFLDDLHMSSITVGQLVNEAARAMGLSAVAM-PTNFATATVREMAEALEARER 90 (102)
T ss_dssp CCHHHHHHHHHHHHTTSCSSSCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCSTTSS-CSCCTTCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHcCCCcchhhhcCCcHHHHHHHHHHHHHHhCCCCCcc-HHHHHHccHHHHHHHHHHhhc
Confidence 479999999999999999999999999999999999999999999999999999887 6667 999999999987653
No 14
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=99.74 E-value=2.5e-18 Score=115.41 Aligned_cols=81 Identities=27% Similarity=0.484 Sum_probs=76.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHc
Q 033233 40 DDHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYN 119 (124)
Q Consensus 40 ~~~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~ 119 (124)
--.|.+.++.++|+++|++.+++++++|+++++| .+||||||++++|+..||++||++||.+++.++.|++++++||.+
T Consensus 10 ~~~~~~~~i~~~l~~ila~~l~v~~~~I~~d~~L-~dLGlDSL~~veL~~~LE~~fgi~i~~~~l~~~~TV~~L~~~I~~ 88 (100)
T 1vku_A 10 HHHMERKKLIAKFVEIASEKMGKDLETVDEENTF-KELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIK 88 (100)
T ss_dssp CCTTHHHHHHHHHHHHHHHTTCCCCCSCCTTSBT-TTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHCCCHHHCCCCCCH-HHcCCchHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHH
Confidence 3468899999999999999999999999999999 799999999999999999999999999999999999999999987
Q ss_pred CC
Q 033233 120 HP 121 (124)
Q Consensus 120 ~~ 121 (124)
++
T Consensus 89 ~~ 90 (100)
T 1vku_A 89 KL 90 (100)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 15
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=99.74 E-value=5.3e-18 Score=115.67 Aligned_cols=80 Identities=29% Similarity=0.569 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 42 HLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 42 ~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
.|+++++.++|++++++.+|++.++|+++++|.+++|+|||++++++..||++||++|+.+++.++.|++++++||.++.
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~ 81 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKLE 81 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCcCHHhCCCCCchhhccCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHHH
Confidence 58999999999999999999999999999999669999999999999999999999999999999999999999997654
No 16
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=99.74 E-value=2.8e-18 Score=108.64 Aligned_cols=79 Identities=43% Similarity=0.682 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 43 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
|+++++.+++++++++.++++.++++++++|..++|+|||++++++..||++||++++.+++.++.|++++++++.+++
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 79 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAVEYIKAKL 79 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCBHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCHHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHHc
Confidence 7899999999999999999998999999999559999999999999999999999999999999999999999998754
No 17
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=99.73 E-value=7.9e-18 Score=115.45 Aligned_cols=76 Identities=20% Similarity=0.301 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 42 HLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 42 ~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
.| ++++.++|+++|++.++ |+++++|.++||||||++++|+..||++|||+|+++++.++.||+++++||.+++
T Consensus 26 ~M-~~ei~~~v~~il~e~l~-----I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~e~l~~~~TV~dlv~~I~~~l 99 (113)
T 2cgq_A 26 AM-EEAINATIQRILRTDRG-----ITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVGDVYTSVAVWF 99 (113)
T ss_dssp CH-HHHHHHHHHHHHTCCSC-----CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCBHHHHHHHHHTTC
T ss_pred cc-HHHHHHHHHHHHHHHhC-----CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCHHHHHhCCCHHHHHHHHHHHH
Confidence 57 89999999999999987 8999999779999999999999999999999999999999999999999999876
Q ss_pred CC
Q 033233 122 MA 123 (124)
Q Consensus 122 ~a 123 (124)
++
T Consensus 100 ~~ 101 (113)
T 2cgq_A 100 PE 101 (113)
T ss_dssp --
T ss_pred hc
Confidence 53
No 18
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=99.72 E-value=6.7e-18 Score=107.85 Aligned_cols=78 Identities=40% Similarity=0.510 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCCC-CCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCCC
Q 033233 44 TKEEVIDRVLSVVKCFPKVDPS-QVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPM 122 (124)
Q Consensus 44 ~~~ei~~~l~~il~e~l~v~~~-~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~~ 122 (124)
+++++.++|++++++.++++.+ +++++++|. ++|+|||++++++..||++||++|+.+++.++.|++++++||.++++
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~~~i~~~~~l~-dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~ 79 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGADVVVTADSEFS-KLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIEGLLE 79 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSSSCCCSSCCSC-CCTTCCSCHHHHHHHHHHHTTCCCCGGGSSSCCSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCcccccCCCCchh-hcCCCHHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHHHHHHHHh
Confidence 3568999999999999999887 899999997 99999999999999999999999999999999999999999987643
No 19
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=99.72 E-value=4.8e-18 Score=108.81 Aligned_cols=78 Identities=41% Similarity=0.624 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 44 TKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 44 ~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
+++++.+++++++++.++++.++++++++|..++|+|||++++++..||++||++|+.+++.++.|++++++|+.+++
T Consensus 4 ~~~~i~~~l~~ii~~~l~~~~~~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 81 (82)
T 2qnw_A 4 DDRPLLERVKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDALSYIEKAK 81 (82)
T ss_dssp CSHHHHHHHHHHHHHHHCCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHCCCHhhCCCccchhhccCCcHHHHHHHHHHHHHHHCCcCCHHHHHHcCCHHHHHHHHHHhc
Confidence 567899999999999999999999999999669999999999999999999999999999999999999999998764
No 20
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=99.71 E-value=1.2e-17 Score=113.03 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhcCCCC--CCCCCCCCCcccccCC-ChhhHHHHHHHHHHHhCCccChhh--cccCccHHHHHHHHHcCC
Q 033233 47 EVIDRVLSVVKCFPKVD--PSQVTPDVHFQKDLGL-DSLDNVEIVMALEEEFKLEIPDKE--AVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 47 ei~~~l~~il~e~l~v~--~~~I~~dt~l~~dLGl-DSL~~veli~~lEe~fgI~I~~~~--l~~~~Tv~dlv~~I~~~~ 121 (124)
++.++|+++|++.++++ +++|+++++|.+++|+ |||++++|+..||++|||+|++++ ..++.|++++++||.+++
T Consensus 24 ~i~~~i~~il~e~l~~~~~~~~i~~d~~L~~dLGl~DSL~~veLi~~lE~~FgI~I~~eel~~~~~~Tv~~l~~~I~~~~ 103 (105)
T 2lki_A 24 QHLEAVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLALFVEHKL 103 (105)
T ss_dssp CTHHHHHHHHHHHTTCTTGGGTCCTTSBCBTTBTTCCHHHHHHHHHHHHHHHTSCCCGGGCCGGGGSBHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccccCCCCCchhhhcCcccHHHHHHHHHHHHHHhCCCcCHHHhhHHhcCCHHHHHHHHHHHh
Confidence 57889999999999988 7899999999878999 999999999999999999999999 458999999999998876
Q ss_pred C
Q 033233 122 M 122 (124)
Q Consensus 122 ~ 122 (124)
+
T Consensus 104 ~ 104 (105)
T 2lki_A 104 S 104 (105)
T ss_dssp T
T ss_pred c
Confidence 4
No 21
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=99.71 E-value=4e-18 Score=109.95 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCC----CCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHH
Q 033233 43 LTKEEVIDRVLSVVKCFPKVDPS----QVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIY 118 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l~v~~~----~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~ 118 (124)
|+++.+.+.|++++++.++++.+ +++++++| .++|+|||++++++..||++||++||.+++.++.|++++++||.
T Consensus 1 M~~~~~~~~l~~il~~~l~~~~~~~~~~i~~~~~l-~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~ 79 (86)
T 1af8_A 1 MATLLTTDDLRRALVECAGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLIN 79 (86)
T ss_dssp CCCSSCHHHHHHHHHTTCCCCSCCCTTTCSSTTST-TTTTCCTTTHHHHHHHHTTTTCSCCCTTTTTTCCSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCCCcccccccCCCCCCh-hhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHH
Confidence 44455678899999999999876 78999999 59999999999999999999999999999999999999999998
Q ss_pred cCC
Q 033233 119 NHP 121 (124)
Q Consensus 119 ~~~ 121 (124)
+++
T Consensus 80 ~~~ 82 (86)
T 1af8_A 80 GAL 82 (86)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 22
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=99.71 E-value=1.9e-17 Score=106.17 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccC-CChhhHHHHHHHHHHHhCCccChhhcc--cCccHHHHHHHHHcCC
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLG-LDSLDNVEIVMALEEEFKLEIPDKEAV--RIDACNLAIEYIYNHP 121 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLG-lDSL~~veli~~lEe~fgI~I~~~~l~--~~~Tv~dlv~~I~~~~ 121 (124)
++++.++|++++++.++.+..+++++++|. ++| +|||++++|++.||++|||+||++++. ++.|++++++||.+++
T Consensus 2 ~~~i~~~i~~il~~~~~~~~~~i~~d~~l~-~~g~lDSl~~velv~~lE~~fgi~i~~~~~~~~~~~Tv~~l~~~i~~~~ 80 (80)
T 1dv5_A 2 DEAIKNGVLDILADLTGSDDVKKNLDLNLF-ETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQAQ 80 (80)
T ss_dssp CHHHHHHHHHHHHHHHTSSSTTTCSSCCSS-TTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCCcchh-hccCcChHHHHHHHHHHHHHhCCcCCHHHcCHHhcCCHHHHHHHHHHcC
Confidence 468999999999999998888899999997 556 999999999999999999999999986 8999999999998763
No 23
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=99.70 E-value=3.1e-17 Score=103.66 Aligned_cols=75 Identities=45% Similarity=0.675 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 47 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 47 ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
++.+++++++++.+++++++++++++|.+++|+|||++++++..||++||++++.+++.++.|++++++|+.++.
T Consensus 3 ~i~~~l~~~~~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~ 77 (78)
T 1l0i_A 3 TIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTTVQAAIDYINGHQ 77 (78)
T ss_dssp CHHHHHHHHHHHHHTCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHHhc
Confidence 578999999999999998999999999669999999999999999999999999999999999999999998765
No 24
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=99.51 E-value=2.2e-18 Score=116.15 Aligned_cols=80 Identities=24% Similarity=0.388 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 42 HLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 42 ~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
.|+++ +.++|+++|++.+++++++|+++++| .+||+|||++++|+..||++||++|+.+++.++.|++++++||.+++
T Consensus 22 ~M~~e-i~~~l~~ila~~l~i~~~~I~~d~~l-~dLGlDSL~~veL~~~lE~~fgi~i~~~~l~~~~TV~~l~~~I~~~~ 99 (103)
T 2lte_A 22 HMPND-MEDHLLTVLSVASGVPKEEISRDSRM-EDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLETVDELFQLVEKHR 99 (103)
Confidence 47766 99999999999999999999999999 69999999999999999999999999999999999999999999876
Q ss_pred CC
Q 033233 122 MA 123 (124)
Q Consensus 122 ~a 123 (124)
++
T Consensus 100 ~~ 101 (103)
T 2lte_A 100 AA 101 (103)
Confidence 54
No 25
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=99.67 E-value=3.7e-17 Score=110.34 Aligned_cols=84 Identities=14% Similarity=0.273 Sum_probs=65.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCC--CCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcc--cCccHH
Q 033233 36 MSSHDDHLTKEEVIDRVLSVVKCFPK--VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAV--RIDACN 111 (124)
Q Consensus 36 ~~~~~~~M~~~ei~~~l~~il~e~l~--v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~--~~~Tv~ 111 (124)
.+.+.+.++++++.++|+++|++.++ ++.++|+++++|. ++|+|||++++|+..||++|||+||++++. ++.|++
T Consensus 11 ~~~~~~~~~~~~i~~~i~~il~~~l~~~v~~~~i~~d~~l~-dlGlDSL~~veLv~~lE~~fgI~i~~~~l~~~~~~tv~ 89 (105)
T 2jq4_A 11 SSGRENLYFQGHMNATIREILAKFGQLPTPVDTIADEADLY-AAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIK 89 (105)
T ss_dssp ------------CHHHHHHHHHHTSCCSSCGGGCCTTSCGG-GGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhccCCCcccCCCCCCHh-hcCCCHHHHHHHHHHHHHHHCCCcCHHHhhhhhcCCHH
Confidence 45677888899999999999999865 4578999999997 999999999999999999999999999976 788998
Q ss_pred HHHHHHHcC
Q 033233 112 LAIEYIYNH 120 (124)
Q Consensus 112 dlv~~I~~~ 120 (124)
+++++|...
T Consensus 90 ~l~~~v~~~ 98 (105)
T 2jq4_A 90 AIEDTVKLI 98 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888654
No 26
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A
Probab=99.67 E-value=6.1e-17 Score=108.28 Aligned_cols=75 Identities=24% Similarity=0.399 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhh------cccCcc-----HHHHHH
Q 033233 47 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKE------AVRIDA-----CNLAIE 115 (124)
Q Consensus 47 ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~------l~~~~T-----v~dlv~ 115 (124)
++.++|++++++.++++.++|+++++|.++||||||++++|+..||++|||+|+.++ +.++.| ++++++
T Consensus 3 ~i~~~v~~ii~~~l~~~~~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~~~~~~~T~~~~Tv~~l~~ 82 (101)
T 2kw2_A 3 STFDRVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDGKATTEQYFVLKNLAA 82 (101)
T ss_dssp CHHHHHHHHHHHHHCCCGGGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSSCHHHHHBHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHhhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCccCHHHhcchhhhhhccCCCcCcHHHHHH
Confidence 688999999999999999999999999779999999999999999999999999987 568888 999999
Q ss_pred HHHcCC
Q 033233 116 YIYNHP 121 (124)
Q Consensus 116 ~I~~~~ 121 (124)
||.+++
T Consensus 83 ~i~~~~ 88 (101)
T 2kw2_A 83 RIDELV 88 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998654
No 27
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=99.67 E-value=8.4e-17 Score=103.40 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhcCCCC--CCCCCCCCCcccccCC-ChhhHHHHHHHHHHHhCCccChhhccc--CccHHHHHHHHHcCCC
Q 033233 48 VIDRVLSVVKCFPKVD--PSQVTPDVHFQKDLGL-DSLDNVEIVMALEEEFKLEIPDKEAVR--IDACNLAIEYIYNHPM 122 (124)
Q Consensus 48 i~~~l~~il~e~l~v~--~~~I~~dt~l~~dLGl-DSL~~veli~~lEe~fgI~I~~~~l~~--~~Tv~dlv~~I~~~~~ 122 (124)
+.++|++++++.++++ +++++++++|.+++|+ ||+++++++..||++|||+|+++++.. +.|++++++||.++++
T Consensus 3 i~~~l~~il~~~l~~~~~~~~i~~d~~l~~dlg~~DSl~~~elv~~lE~~fgi~i~~~~l~~~~~~Tv~~l~~~i~~~~~ 82 (83)
T 2amw_A 3 HLEAVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLALFVEHKLS 82 (83)
T ss_dssp THHHHHHHHHHHTTCGGGGGSCCTTSCSTTTSTTTTHHHHHHHHHHHHHHTTCCCCTTTCCGGGSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCccccCCCcchhhhccCccCHHHHHHHHHHHHHHhCCeeCHHhhhHHhcCCHHHHHHHHHHHhc
Confidence 6788999999999988 7899999999878999 999999999999999999999999654 9999999999987653
No 28
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=99.66 E-value=3e-17 Score=105.15 Aligned_cols=76 Identities=21% Similarity=0.338 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhcCCCCCC-CCC--CCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCCCC
Q 033233 47 EVIDRVLSVVKCFPKVDPS-QVT--PDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMA 123 (124)
Q Consensus 47 ei~~~l~~il~e~l~v~~~-~I~--~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~~a 123 (124)
.+.+.|++++++.++++.+ +++ ++++| .++|+|||++++++..||++||++||.+++.++.|++++++||.+++++
T Consensus 4 ~~~~~l~~~l~~~l~~~~~~~i~~~~~~~~-~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~~ 82 (83)
T 1or5_A 4 LTVDDLKKLLAETAGEDDSVDLAGELDTPF-VDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTPAT 82 (83)
T ss_dssp SCHHHHHHHHHHHSCCCSSCCGGGCSSSCH-HHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHhCCCcccccCCCCCCcH-HHhCCCHHHHHHHHHHHHHHHCCccCHHHHhccCCHHHHHHHHHHHhcC
Confidence 4678899999999999877 898 99998 5999999999999999999999999999999999999999999888764
No 29
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=99.62 E-value=5.6e-16 Score=97.09 Aligned_cols=75 Identities=39% Similarity=0.634 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCCC
Q 033233 48 VIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPM 122 (124)
Q Consensus 48 i~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~~ 122 (124)
+.+.+++++++.++++.++++++++|..++|+|||.+++++..+|++||++++..++.++.|++++++++.++.+
T Consensus 2 i~~~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~i~~~~~~~~~tv~~l~~~i~~~~~ 76 (77)
T 2ehs_A 2 LEERVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQTVGDVINYLKEKVG 76 (77)
T ss_dssp HHHHHHHHHHHHHCCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhCCChhhCCCccchhhccCCCHHHHHHHHHHHHHHhCCccCHHHHHHcCCHHHHHHHHHHHhc
Confidence 678899999999999988999999995599999999999999999999999999999999999999999987653
No 30
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=99.62 E-value=5.8e-17 Score=102.51 Aligned_cols=75 Identities=43% Similarity=0.588 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 47 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 47 ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
++.+++++++++.++++.++++++++|..++|+|||++++++..||++||++++..++.++.|++++++++.+++
T Consensus 4 ~i~~~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 78 (79)
T 2l3v_A 4 DTAERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKFIDKAS 78 (79)
T ss_dssp HHHHHHHHHHHHHTCCCSTTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCCCCHHHHTTCSSSSTTHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHhhCCCCCccccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHHhc
Confidence 789999999999999999999999999559999999999999999999999999999999999999999998775
No 31
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=99.61 E-value=8.3e-16 Score=101.67 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 42 HLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 42 ~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
.|+.+++.+.+.+.+....+.++++++++++| .+||+|||++++|+..||++|||+||.+++.++.|++++++||.+++
T Consensus 3 ~~t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~-~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~ 81 (95)
T 1nq4_A 3 LLTLSDLLTLLRECAGEEESIDLGGDVEDVAF-DALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASL 81 (95)
T ss_dssp CCCHHHHHHHHHHHHTCSSTTCSCSCCSSSCH-HHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHccccccccccCCCCCCh-hhhCCCHHHHHHHHHHHHHHHCCccCHHHHHcCCCHHHHHHHHHHHH
Confidence 46666766666666554444455689999999 49999999999999999999999999999999999999999997653
No 32
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=99.57 E-value=1.3e-16 Score=104.78 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhcCC--------CCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccC---hhhcccCccHHHHHH
Q 033233 47 EVIDRVLSVVKCFPK--------VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIP---DKEAVRIDACNLAIE 115 (124)
Q Consensus 47 ei~~~l~~il~e~l~--------v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~---~~~l~~~~Tv~dlv~ 115 (124)
++.++|+++|++.++ +++++++++++| .+||||||++++|+..||++|||+|+ ..++.++.|++++++
T Consensus 4 ~i~~~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l-~dlg~DSl~~vel~~~lE~~fgi~i~~~~~~~~~~~~Tv~~l~~ 82 (92)
T 1fh1_A 4 QLTLEIISAINKLVKAENGERTSVALGEITTDTEL-TSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVVE 82 (92)
T ss_dssp -CHHHHHHHHHHHC-----------------------------CTTTTHHHHHHHC-----------------CTTTSTH
T ss_pred HHHHHHHHHHHHHHHhccccccCCCHhhCCCCCCH-hhcCCChHHHHHHHHHHHHHhCCccCCccHhHHhhcCCHHHHHH
Confidence 567778888887776 445589999999 69999999999999999999999999 677899999999999
Q ss_pred HHHcCCCC
Q 033233 116 YIYNHPMA 123 (124)
Q Consensus 116 ~I~~~~~a 123 (124)
||.+++++
T Consensus 83 ~i~~~~~~ 90 (92)
T 1fh1_A 83 AVRGLLTK 90 (92)
T ss_dssp HHHC----
T ss_pred HHHHHhhc
Confidence 99988764
No 33
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=99.55 E-value=1.5e-14 Score=92.45 Aligned_cols=80 Identities=13% Similarity=0.117 Sum_probs=74.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 41 DHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 41 ~~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
..++.+++.+.+.+++++.++++.+.++++.+|. ++|+|||.++++...|+++||++++..++.+..|++++++++.++
T Consensus 8 ~~~~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~-~lG~DSl~~~~l~~~l~~~~~~~i~~~~~~~~~ti~~la~~l~~~ 86 (88)
T 2afd_A 8 QPASVEDIQSWLIDQFAQQLDVDPDDIDMEESFD-NYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAKRLGEL 86 (88)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTSCGGGCCTTSCGG-GTTCCSTHHHHHHHHHHHHTTSCCCGGGTTTCCSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCcCHHHcCCCCCHH-HcCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 4567889999999999999999888999999996 999999999999999999999999999999999999999999876
Q ss_pred C
Q 033233 121 P 121 (124)
Q Consensus 121 ~ 121 (124)
+
T Consensus 87 ~ 87 (88)
T 2afd_A 87 Y 87 (88)
T ss_dssp T
T ss_pred h
Confidence 4
No 34
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=99.50 E-value=3.9e-14 Score=91.22 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccCh--hhcccCccHHHHHHHHHcCC
Q 033233 44 TKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPD--KEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 44 ~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~--~~l~~~~Tv~dlv~~I~~~~ 121 (124)
..+++.+.+++++++.++++.++++++.+|. ++|+|||.++++...|+++||++++. .++..+.|+++++++|.+..
T Consensus 8 ~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~-~lG~DSL~~~~l~~~l~~~~g~~l~~~~~~l~~~~Tv~~la~~l~~~~ 86 (89)
T 2kr5_A 8 VSNEKLDAVMRVVSEESGIALEELTDDSNFA-DMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDFMLGSG 86 (89)
T ss_dssp CCHHHHHHHHHHHHHHHCCCGGGCCTTCBHH-HHTCCHHHHHHHHHHHHHTTCCCCCSSCCTTTSCCBHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHHHHHHCcCHHHCCCCCCHH-HcCccHHHHHHHHHHHHHHHCCCCCchHHHHHcCCCHHHHHHHHHHhC
Confidence 4568999999999999999989999999995 99999999999999999999999999 88999999999999998754
Q ss_pred C
Q 033233 122 M 122 (124)
Q Consensus 122 ~ 122 (124)
.
T Consensus 87 ~ 87 (89)
T 2kr5_A 87 D 87 (89)
T ss_dssp C
T ss_pred c
Confidence 3
No 35
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=99.50 E-value=4.4e-14 Score=92.23 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 41 DHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 41 ~~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
..++.+++.+.+.+++++.++++.++++++.+|. ++|+|||.++++...|+++||++++..++....|+++++++|.++
T Consensus 15 ~~~~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~-~lG~DSl~~~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~ 93 (99)
T 2liu_A 15 NQVNLSEIKQVLKQQLAEALYTEESEIAEDQKFV-DLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSGYIAQI 93 (99)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCGGGCCSSSCHH-HHTCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCSHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHCcCHHHcCCCCCHH-HhCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 3468899999999999999999989999999996 999999999999999999999999999999999999999999765
Q ss_pred C
Q 033233 121 P 121 (124)
Q Consensus 121 ~ 121 (124)
+
T Consensus 94 ~ 94 (99)
T 2liu_A 94 L 94 (99)
T ss_dssp H
T ss_pred h
Confidence 3
No 36
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=99.46 E-value=8.7e-14 Score=102.94 Aligned_cols=85 Identities=14% Similarity=0.277 Sum_probs=75.3
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHH
Q 033233 37 SSHDDHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEY 116 (124)
Q Consensus 37 ~~~~~~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~ 116 (124)
....+.|+++++.+.|++++++.++++.++|+++.+|. +||+|||.+++|...|+++||++++..++.++.|++++++|
T Consensus 16 ~~~~~~~~~~~i~~~l~~~~a~~l~~~~~~i~~~~~f~-~lG~DSl~~~el~~~l~~~~g~~l~~~~~~~~~Ti~~la~~ 94 (212)
T 2l22_A 16 PRGSHMVADDECAQFLRQSLAAMLYCEPGQIRDGSRFL-ELGLDSVIAAQWIREINKHYQLKIPADGIYTYPVFKAFTQW 94 (212)
T ss_dssp ------CCTTHHHHHHHHHHHHHTTCCTTSCCTTCBHH-HHTCCHHHHHHHHHHHHHHTTCCCCTTHHHHCCBHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCcCHHHcCCCCCHH-HhCCcHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHH
Confidence 34556688899999999999999999999999999996 99999999999999999999999999999999999999999
Q ss_pred HHcCCC
Q 033233 117 IYNHPM 122 (124)
Q Consensus 117 I~~~~~ 122 (124)
|.++..
T Consensus 95 l~~~~~ 100 (212)
T 2l22_A 95 VGTQLQ 100 (212)
T ss_dssp HHTTSC
T ss_pred HHHhcc
Confidence 987653
No 37
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=99.41 E-value=1.7e-13 Score=89.12 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhhcCC-CCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 44 TKEEVIDRVLSVVKCFPK-VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 44 ~~~ei~~~l~~il~e~l~-v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
.++.+.+.+.+++++.++ .+.+.++++.+|. ++|+|||..+++...++++||++++..++.+..|++++++++.+++
T Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~i~~~~~f~-~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~l 94 (95)
T 2ju1_A 17 RTAELVRLVRTSTATVLGHDDPKAVRATTPFK-ELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAGFLDAEL 94 (95)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCGGGCCSSSCHH-HHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCChhhCCCCCCHH-HcCCcHHHHHHHHHHHHHHHCCCCChhHHhcCCCHHHHHHHHHHHc
Confidence 345788899999999999 7788999999996 9999999999999999999999999999999999999999997653
No 38
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=99.39 E-value=1e-12 Score=86.78 Aligned_cols=70 Identities=24% Similarity=0.309 Sum_probs=62.4
Q ss_pred HHHHHHHhhcCCCC-CCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 50 DRVLSVVKCFPKVD-PSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 50 ~~l~~il~e~l~v~-~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
..|++.+++++|++ ++.|+++.+|. +||+|||+.+||...||++||+++|..++..+ |+++|++++....
T Consensus 9 ~~v~~~va~iLg~~~~~~I~~~~~l~-dLG~DSL~aVELr~~Le~~fgi~lp~~~l~~~-Ti~~La~~v~~~~ 79 (91)
T 2cg5_B 9 RDLVEAVAHILGIRDLAAVNLDSSLA-DLGLDALMSVEVRQTLERELNLVLSVREVRQL-TLRKLQELSSKAD 79 (91)
T ss_dssp TTHHHHHHHHTTCCSCTTSCTTSBTT-TTTCCHHHHHHHHHHHHHHHCCCCCHHHHHTC-BHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHCCCchhhCCCCCCHH-HhCCcchHHHHHHHHHHHHHCCCCCHHHHHhC-CHHHHHHHHhccc
Confidence 35788888899986 58999999995 99999999999999999999999999998785 9999999987553
No 39
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=99.35 E-value=1.6e-12 Score=84.95 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCCC
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPM 122 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~~ 122 (124)
.+++.+.|.+++++++|+ +.++.+.+|+ ++|.|||.+++++..|+++||++++..++....|+++++++|.+...
T Consensus 14 ~~~~e~~l~~i~~~vL~~--~~i~~~~~Ff-~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~pTi~~la~~l~~~~~ 88 (93)
T 4i4d_A 14 RRALERDIAAIWAETLGR--DSVGPHEDFA-ALGGNSIHAIXITNRVEELVDAELSIRVLLETRTVAGMTDHVHATLT 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHTC--SCCCTTCCTT-TTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCSHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCC--CCCCCCCCHH-HcCCcHHHHHHHHHHHHHHhCCCCCHHHHHcCCCHHHHHHHHHHHcc
Confidence 557889999999999998 4699999998 99999999999999999999999999999999999999999987653
No 40
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=99.32 E-value=3.4e-12 Score=83.38 Aligned_cols=73 Identities=15% Similarity=0.230 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 46 EEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 46 ~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
.++.+.|.++++++++++ .++.+.+|+ ++|.|||.+++++..|+++||++++..++....|++++++++.+..
T Consensus 13 ~~~e~~l~~i~~~vL~~~--~i~~~~~Ff-~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~~Ti~~la~~i~~~~ 85 (91)
T 1dny_A 13 NAVESKLAEIWERVLGVS--GIGILDNFF-QIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATRS 85 (91)
T ss_dssp SHHHHHHHHHHHHHHTCS--SCCSSCCTT-SSCCSSHHHHHHHHHHHHHCCCCCCHHHHHHSCSHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhCCC--CCCCCCCHH-HcCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHhh
Confidence 467889999999999984 799999998 9999999999999999999999999999999999999999997653
No 41
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=99.31 E-value=3.4e-12 Score=94.34 Aligned_cols=78 Identities=15% Similarity=0.276 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 43 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
.+++++.+.|++++++.++++.++|+++.+|. ++|+|||.+++++..|+++||++++..++.++.|++++++||.++.
T Consensus 126 ~~~~~i~~~l~~~~~~~l~~~~~~i~~~~~f~-~lG~DSl~a~el~~~l~~~~g~~l~~~~l~~~~Ti~~La~~l~~~~ 203 (212)
T 2l22_A 126 AQRESIQDYLKQSLGELLFLDPGQLRSGAQFL-DLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADEVDRRV 203 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSSSCCSSCCGG-GGCSSSHHHHHHHHHHHHHTTCCCCGGGGGGCCSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHCCChhhCCCCCCHH-HhCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHHHHh
Confidence 45788999999999999999999999999997 9999999999999999999999999999999999999999997654
No 42
>3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A
Probab=98.88 E-value=3.3e-09 Score=81.97 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 46 EEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 46 ~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
+++.+.|.+++++++|++. +..+.+|+ ++|.|||.+++++..|+++||++++..++....|+++++++|.+..
T Consensus 10 ~~~e~~l~~~~~~~l~~~~--i~~~~~ff-~lGgdSl~a~~l~~~l~~~~~~~~~~~~~~~~~t~~~la~~~~~~~ 82 (329)
T 3tej_A 10 AGSETIIAAAFSSLLGCDV--QDADADFF-ALGGHXLLAMKLAAQLSRQVARQVTPGQVMVASTVAKLATIIDAEE 82 (329)
T ss_dssp TTHHHHHHHHHHHHHTC-C--CSTTCBTT-TTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHCCBHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHhCCCC--CCCCCCHH-HcCCcHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHhhc
Confidence 3677889999999999864 89999997 9999999999999999999999999999999999999999998654
No 43
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=2.6e-09 Score=72.71 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhhcCC-CCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhC-CccChhhcccCccHHHHHHHHHcC
Q 033233 45 KEEVIDRVLSVVKCFPK-VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFK-LEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~-v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fg-I~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
+.++...|.++..++++ + ..|..+++|+ ++|-|||.++.++..|+++|| ++++..++....|+++++++|.++
T Consensus 23 ~~~~E~~La~iW~~vL~~~--~~i~~~ddFF-~lGG~SLla~rLv~~ir~~~g~v~l~l~~Lf~~pTl~~lA~~l~~~ 97 (110)
T 2cq8_A 23 ELVTAEAVRSVWQRILPKV--LEVEDSTDFF-KSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRK 97 (110)
T ss_dssp HHHHHHHHHHHHHHHCSSC--SCCCTTCBHH-HHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCC--CCCCCCCCHH-hcCChHHHHHHHHHHHHHHcCCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 46688999999999998 4 4699999998 999999999999999999999 999999999999999999998754
No 44
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.58 E-value=9.7e-08 Score=77.29 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
..++...|.+++++++|++ .|..+.+|+ +||.|||.+++++..++++||++++..++....|++++++++.+.
T Consensus 8 ~~~~e~~l~~iw~~vL~~~--~i~~~d~ff-~lGgdSl~a~~l~~~~~~~~g~~l~~~~i~~~~ti~~la~~~~~~ 80 (520)
T 2jgp_A 8 RSVWEARLAQVWEQVLNVP--QVGALDDFF-ALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQELAAFIEET 80 (520)
T ss_dssp CSHHHHHHHHHHHHHHTCS--CCCTTCBTT-TTTCCHHHHHHHHHHHHHHHCBCCCHHHHHHSCBHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCC--CCCCCccHH-HhcccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhh
Confidence 3467788999999999985 689999998 999999999999999999999999999999999999999999754
No 45
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=98.57 E-value=1.2e-07 Score=73.06 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=61.6
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHc
Q 033233 50 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYN 119 (124)
Q Consensus 50 ~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~ 119 (124)
+++++.+++.+ ++.+++.++.+|. ++|+||+.++.++..+++. |++++..++.+..|++++.+++.+
T Consensus 218 dwlr~~va~~L-~~~~~i~~~~nL~-~lGlDSi~~m~l~~~~~~~-g~~~~~~~l~~~ptl~~~~~~l~~ 284 (287)
T 2fq1_A 218 AALREVILPLL-DESDEPFDDDNLI-DYGLDSVRMMALAARWRKV-HGDIDFVMLAKNPTIDAWWKLLSR 284 (287)
T ss_dssp HHHHHHHGGGC-CCSSCCCTTSCSG-GGTCCTTHHHHHHHHHTTT-CTTCCHHHHHTSCSHHHHHHHHHC
T ss_pred HHHHHHHHHHh-CCHhhcCCCCCHH-HhCccHHHHHHHHHHHHHc-CCCCCHHHHHhCccHHHHHHHHHh
Confidence 35777888888 8888999999997 9999999999999999998 999999999999999999999983
No 46
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=98.34 E-value=5.7e-07 Score=80.90 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
..++.+.+.+++++++|+ +.|..+.+|+ ++|.|||.+++++..|+++||++++..++....|+++|++++...
T Consensus 970 ~~~~e~~l~~~~~~vL~~--~~i~~~~~ff-~lGg~Sl~a~~l~~~l~~~~g~~l~~~~~~~~~ti~~la~~~~~~ 1042 (1304)
T 2vsq_A 970 RNEMEETIAQIWSEVLGR--KQIGIHDDFF-ALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNG 1042 (1304)
T ss_dssp SSHHHHHHHHHHHHHHTC--SCCCTTCCTT-TTTCCHHHHHHHHHHSSSTTSCCCCSSCTTTCCSHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHcCC--CccCCCCCHH-HhCCChHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHhc
Confidence 457788999999999997 4589999998 999999999999999999999999999999999999999999754
No 47
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}
Probab=98.25 E-value=1.2e-07 Score=77.21 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
..++...|.++++++++++ .|..+.+|+ ++|.|||.+++++..|++ ||+.++..++....|+++++++|.+.
T Consensus 43 ~~~~e~~l~~~w~~~l~~~--~i~~~~~ff-~lGg~Sl~a~~l~~~~~~-~~~~~~~~~~~~~~t~~~la~~~~~~ 114 (508)
T 4f6l_B 43 SNEIEQTFVDVFGEVLKQN--DVGVDDDFF-ELGGNSLEAMLVVSHLKR-FGHHISMQTLYQYKTVRQIVNYMYQN 114 (508)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHhCCC--CCCCCCChH-HcCchHHHHHHHHHHHHH-cCCCccHHHHhcCCcHHHHHHHHHhh
Confidence 4577888999999999985 689999998 999999999999999986 99999999999999999999999764
No 48
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=98.09 E-value=6.1e-06 Score=68.58 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=59.2
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHcCC
Q 033233 49 IDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHP 121 (124)
Q Consensus 49 ~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~~ 121 (124)
...+.+++.+.++. .+.+..+.+|+ ++|.|||.+++|+..|++ ++++++..++.+..|+++++++|.+++
T Consensus 547 ~~~l~~~~~~~l~~-~~~~~~~d~Ff-~lGgdSl~a~~l~~~l~~-~~~~~~~~~~~~~pti~~la~~l~~~~ 616 (617)
T 3rg2_A 547 KAALREVILPLLDE-SDEPFDDDNLI-DYGLDSVRMMALAARWRK-VHGDIDFVMLAKNPTIDAWWKLLSREV 616 (617)
T ss_dssp HHHHHHHHGGGSCT-TCCCCTTSCGG-GGTCCHHHHHHHHHHHHT-TSTTCCHHHHHHSCCHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcc-CCCCCCCCChh-hcCccHHHHHHHHHHHHH-hcCCCCHHHHhcCCCHHHHHHHHHhhc
Confidence 35677788888763 34678899998 999999999999999987 788999999999999999999997654
No 49
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=98.05 E-value=6.1e-07 Score=75.21 Aligned_cols=73 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHH-HhCCccChhhcccCccHHHHHHHHHcC
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEE-EFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe-~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
.++....+.++++++++++ .+..+.+|+ ++|.|||.+++++..|++ .||++++..++....|+.+|+++|.+.
T Consensus 522 ~~~~e~~l~~iw~~vL~~~--~~~~~d~Ff-~lGGdSl~a~~l~~~l~~~~~~~~l~~~~~f~~pti~~la~~l~~~ 595 (620)
T 4dg8_A 522 LDPDQRGCAQLWSELLGCE--VGAADQDFF-LCGGNSLLALQLVALCQSAGAGANLGLADLQANSRLDQFSRLLRSH 595 (620)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHhCCC--CCCCCCChh-hccCcHHHHHHHHHHHHhhCCCCCcCHHHHhcCCCHHHHHHHHHhc
Confidence 3456778899999999984 478888998 999999999999999999 899999999999999999999999764
No 50
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.28 E-value=3.9e-05 Score=73.51 Aligned_cols=69 Identities=26% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCC-CCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHHHHHHc
Q 033233 49 IDRVLSVVKCFPKVD-PSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYN 119 (124)
Q Consensus 49 ~~~l~~il~e~l~v~-~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~ 119 (124)
.+.+.++++++++++ .+.|+.+.+|. +||+|||..+||...|+++||+.++..++.+ .|+..+.+++..
T Consensus 2125 ~~~l~~~~a~vL~~~~~~~i~~~~~~~-~lG~DSL~avelr~~i~~~~~~~l~~~~i~~-~t~~~la~~~~~ 2194 (2512)
T 2vz8_A 2125 QKDLVKAVAHILGIRDVASINPDSTLV-DLGLDSLMGVEVRQILEREHDLVLSMREVRQ-LSLRKLQELSSK 2194 (2512)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCcccccCCCCchH-HhCcchHHHHHHHHHHHHHhCCcccHHHHHh-hhHHHHHHHHhh
Confidence 456888889999986 57899999997 9999999999999999999999999988866 688888777643
No 51
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens}
Probab=91.59 E-value=0.033 Score=41.92 Aligned_cols=37 Identities=5% Similarity=-0.123 Sum_probs=8.7
Q ss_pred CCChhhHHHHHHHHHHHhCCccChhhcccCccHHHHH
Q 033233 78 GLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAI 114 (124)
Q Consensus 78 GlDSL~~veli~~lEe~fgI~I~~~~l~~~~Tv~dlv 114 (124)
|.|||.+++++..|+++||++++..++....|+..++
T Consensus 1 GGdSL~a~~l~~rl~~~~g~~l~~~~lf~~pt~~~l~ 37 (316)
T 2px6_A 1 GSHNLACPTPKEDGLAQQQTQLNLRSLLVNPEGPTLM 37 (316)
T ss_dssp -------------------------CCCCCTTSCSEE
T ss_pred CCchHHHHHHHHHHHHHHhhccchhhhhcCCCcCeeE
Confidence 7899999999999999999999999988877776554
No 52
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=80.37 E-value=1.6 Score=23.87 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=17.2
Q ss_pred CCChhhHHHHHHHHHHHhCCc
Q 033233 78 GLDSLDNVEIVMALEEEFKLE 98 (124)
Q Consensus 78 GlDSL~~veli~~lEe~fgI~ 98 (124)
++.=+.+.+|+..+|++|||.
T Consensus 12 ~lTvlE~~eLvk~leekfGVs 32 (40)
T 1dd4_C 12 KLTVSELAELVKKLEDKFGVT 32 (40)
T ss_dssp TSCHHHHHHHHHHHHHHTCCC
T ss_pred hCcHHHHHHHHHHHHHHHCCC
Confidence 344467889999999999997
No 53
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=73.43 E-value=2.6 Score=21.64 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=13.9
Q ss_pred ChhhHHHHHHHHHHHhC
Q 033233 80 DSLDNVEIVMALEEEFK 96 (124)
Q Consensus 80 DSL~~veli~~lEe~fg 96 (124)
.=+.+.+|+..+|++||
T Consensus 14 TvlEl~eLvk~lEe~fG 30 (30)
T 1zav_U 14 TVSELAELVKKLEDKFG 30 (30)
T ss_dssp BHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 34577889999999997
No 54
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*
Probab=65.86 E-value=1.3 Score=44.03 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCccccc-CCChhhHHHHHHHHHHHhCCccChh
Q 033233 48 VIDRVLSVVKCFPKVDPSQVTPDVHFQKDL-GLDSLDNVEIVMALEEEFKLEIPDK 102 (124)
Q Consensus 48 i~~~l~~il~e~l~v~~~~I~~dt~l~~dL-GlDSL~~veli~~lEe~fgI~I~~~ 102 (124)
..+.++.+++..++...++|.++.++. +| |.+|....||+..|+.+||..+|+.
T Consensus 1795 a~~~~~~liA~~~k~~~~~i~~~~~i~-~L~gg~St~~nell~dl~~efg~~~p~~ 1849 (3089)
T 3zen_D 1795 AADATVALIALSAKMRIDQIEALDSIE-SITDGASSRRNQLLVDLGSELNLGAIDG 1849 (3089)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCChhHCCccccHH-HHhCCchHHHHHHHHHHHHHhCCCCCCc
Confidence 345688888888999999999999996 66 9999999999999999999976543
No 55
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=64.42 E-value=4.1 Score=26.56 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHHhhc-CC--CCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhCCc
Q 033233 41 DHLTKEEVIDRVLSVVKCF-PK--VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLE 98 (124)
Q Consensus 41 ~~M~~~ei~~~l~~il~e~-l~--v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fgI~ 98 (124)
..|++.+|...|++.|.+. +. -+...|..|..|..-+|-|.+.+.++...|...|--.
T Consensus 33 ~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~ 93 (101)
T 1v32_A 33 EMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKEN 93 (101)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSC
T ss_pred cccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCcc
Confidence 5799999999999999975 32 2455688888887778999999999999999888643
No 56
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=63.29 E-value=22 Score=21.43 Aligned_cols=46 Identities=13% Similarity=0.307 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHh-CCccChhh
Q 033233 40 DDHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEF-KLEIPDKE 103 (124)
Q Consensus 40 ~~~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~f-gI~I~~~~ 103 (124)
+...+.+++...|.++|+.. .++++..=.+-..||++| |+++....
T Consensus 9 ~~~Psd~ei~~~I~~IL~~a------------------DL~tvT~K~VR~~Le~~~pg~dLs~kK 55 (70)
T 1q1v_A 9 KKPPTDEELKETIKKLLASA------------------NLEEVTMKQICKKVYENYPTYDLTERK 55 (70)
T ss_dssp CCCCCHHHHHHHHHHHHTTS------------------CGGGCCHHHHHHHHHHHCSSSCCSHHH
T ss_pred cCCcCHHHHHHHHHHHHHhC------------------CHHHHhHHHHHHHHHHHccCCCChHHH
Confidence 34557889999999988762 134556667889999999 99988543
No 57
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=54.44 E-value=5.1 Score=25.56 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHhhc-CC--CCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhC
Q 033233 41 DHLTKEEVIDRVLSVVKCF-PK--VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFK 96 (124)
Q Consensus 41 ~~M~~~ei~~~l~~il~e~-l~--v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fg 96 (124)
..+++.++...+++.|.+. +. -+...|.-|..|..-+|-|++.+.++...|...|-
T Consensus 25 ~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~ 83 (93)
T 1uhr_A 25 HTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLM 83 (93)
T ss_dssp SEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEE
T ss_pred CccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcC
Confidence 4679999999999999976 22 23456888999977789999999999888887764
No 58
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=49.45 E-value=4.2 Score=25.92 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCC---CCCCCCCCCCcccccCCChhhHHHHHHHHHHHhC
Q 033233 42 HLTKEEVIDRVLSVVKCFPKV---DPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFK 96 (124)
Q Consensus 42 ~M~~~ei~~~l~~il~e~l~v---~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fg 96 (124)
.+++.++...+++.|.+.--. +...|.-|..|..-+|-|++.+.++...|...|-
T Consensus 26 ~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~ 83 (93)
T 1v31_A 26 VETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLS 83 (93)
T ss_dssp EECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCB
T ss_pred ccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcC
Confidence 579999999999999986222 2345778888877789999999999888888764
No 59
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=48.01 E-value=47 Score=20.54 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHhhc---CCCC---------CCCCCCCCCc--c--cccCCChhhHHHHHHHHHHHhCCccChh
Q 033233 40 DDHLTKEEVIDRVLSVVKCF---PKVD---------PSQVTPDVHF--Q--KDLGLDSLDNVEIVMALEEEFKLEIPDK 102 (124)
Q Consensus 40 ~~~M~~~ei~~~l~~il~e~---l~v~---------~~~I~~dt~l--~--~dLGlDSL~~veli~~lEe~fgI~I~~~ 102 (124)
|+.|++ ++.+.+++.+... .++. .++.++++++ . -+-+.+-....++...+++.+|..++--
T Consensus 1 ~~~m~~-~~l~~l~~~i~~l~~~~~v~~v~LFGS~arG~~~~~SDiDl~V~~~~~~~~~~~~~l~~~l~~~l~~~vDlv 78 (98)
T 1wot_A 1 GSHMDL-ETLRARREAVLSLCARHGAVRVRVFGSVARGEAREDSDLDLLVAFEEGRTLLDHARLKLALEGLLGVRVDIV 78 (98)
T ss_dssp CCCCCH-HHHHHHHHHHHHHHHHHTCSSCEECSHHHHTCCCTTCCCEEEECCCSSCCHHHHHHHHHHHHHHSCSCCEEE
T ss_pred CCcCCH-HHHHHHHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 456888 7777766666543 2332 2344555554 0 0112344557788888999888766543
No 60
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=43.24 E-value=48 Score=20.00 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=22.5
Q ss_pred HHHHHHHhCCc-cChhhcccCccHHHHHHHHHcC
Q 033233 88 VMALEEEFKLE-IPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 88 i~~lEe~fgI~-I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
+..+++.||++ ++.++-..+.|++.++-....+
T Consensus 19 l~dl~~~l~~~~l~~~~~~~~~Tl~G~i~~~lg~ 52 (86)
T 2pls_A 19 VPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGR 52 (86)
T ss_dssp HHHHHHHHTCSCCTTTTSCSCCBHHHHHHHHHTS
T ss_pred HHHHHHHhCCCcCCCccCCCcccHHHHHHHHhCC
Confidence 34678889998 9863223678998887654443
No 61
>3ufe_A Transcriptional antiterminator (BGLG family); extended helix bundle, arcimboldo; 1.50A {Bacillus subtilis} PDB: 3gwh_A
Probab=41.67 E-value=17 Score=22.55 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCccChhhc
Q 033233 84 NVEIVMALEEEFKLEIPDKEA 104 (124)
Q Consensus 84 ~veli~~lEe~fgI~I~~~~l 104 (124)
+..+...+++.||+.+|+++.
T Consensus 79 a~~i~~~ie~~~~i~i~~~Ei 99 (111)
T 3ufe_A 79 AWKLIKILQQTLKKPVHEAEA 99 (111)
T ss_dssp HHHHHHHHHHHHCSCCCTHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHH
Confidence 456778889999999999885
No 62
>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*
Probab=41.45 E-value=40 Score=20.85 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=18.7
Q ss_pred HHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 88 VMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 88 i~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
+..+.+.||+.+|.++-..+.|++.++-....+
T Consensus 28 l~dl~~~l~~~l~~~~~~~~dTlgG~i~~~lg~ 60 (94)
T 2oai_A 28 IEELREVLGAELPDGEENNYHTLAGMCISYFGR 60 (94)
T ss_dssp HHHHHHHHTC-------CCCSBHHHHHHHHHSS
T ss_pred HHHHHHHhCCCCCcccCCCCccHHHHHHHHhCC
Confidence 346788899999863223678999887655443
No 63
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=41.16 E-value=44 Score=21.51 Aligned_cols=18 Identities=6% Similarity=0.158 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHhhcC
Q 033233 43 LTKEEVIDRVLSVVKCFP 60 (124)
Q Consensus 43 M~~~ei~~~l~~il~e~l 60 (124)
|+++++.+.|+.+|..++
T Consensus 3 ~~~~~~l~~vkk~irslL 20 (102)
T 3s93_A 3 SEQERIQECLRKEIRSLL 20 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhh
Confidence 567778887777777653
No 64
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=37.65 E-value=62 Score=19.39 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 89 MALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 89 ~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
..+++.||++++.+ .+.|++.++-....+
T Consensus 20 ~dl~~~l~~~l~~~---~~~Tl~G~i~~~lg~ 48 (83)
T 3llb_A 20 DAFNDFFGSEFSDE---EFDTVGGLVMSAFGH 48 (83)
T ss_dssp HHHHHHHCCCCCTT---TCSBHHHHHHHHHSS
T ss_pred HHHHHHhCCCCCCC---CCcCHHHHHHHHhCc
Confidence 47788999999854 567998887555443
No 65
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=36.78 E-value=60 Score=19.62 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=21.4
Q ss_pred HHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 88 VMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 88 i~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
+..+++.||+++|.+ .+.|++.++-....+
T Consensus 18 l~dl~~~l~~~l~~~---~~dTl~G~v~~~lg~ 47 (87)
T 2rk5_A 18 LNDFNEYFETDLESD---NVDTIAGFYLTGVGT 47 (87)
T ss_dssp HHHHHHHHTCCCCCT---TCCBHHHHHHHHHCS
T ss_pred HHHHHHHhCCCCCCC---CcccHHHHHHHHhCc
Confidence 346788899999864 478998887554443
No 66
>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4
Probab=36.51 E-value=60 Score=20.63 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=21.7
Q ss_pred HHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 88 VMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 88 i~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
+..+++.||++++.+ .+.|++.++-....+
T Consensus 22 l~dl~~~lg~~l~~e---~~dTlgGli~~~lg~ 51 (101)
T 2p3h_A 22 LDEVERAIGYELPEG---DYETISGLLFDHANA 51 (101)
T ss_dssp HHHHHHHHTSCCCCS---SCCBHHHHHHHHHCS
T ss_pred HHHHHHHhCCCCCCC---CCccHHHHHHHHhCC
Confidence 346788899999863 578998887654443
No 67
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=35.31 E-value=57 Score=19.46 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=20.8
Q ss_pred HHHHHHHhCCccChhhcccCccHHHHHHHHHc
Q 033233 88 VMALEEEFKLEIPDKEAVRIDACNLAIEYIYN 119 (124)
Q Consensus 88 i~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~ 119 (124)
+..+++.||++++.+ .+.|++.++-....
T Consensus 19 l~dl~~~l~~~l~~~---~~~Tl~G~i~~~lg 47 (81)
T 3lae_A 19 LRDLNKMFNWELDTE---DARTFNGLILEHLE 47 (81)
T ss_dssp HHHHHHHHCCCCCCS---SCSBHHHHHHHHCS
T ss_pred HHHHHHHhCCCCCCC---CCccHHHHHHHHhC
Confidence 347788999999853 56799888755433
No 68
>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4
Probab=34.88 E-value=78 Score=20.36 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=23.7
Q ss_pred HHHHHHHhCCc--cChhhcccCccHHHHHHHHHcC
Q 033233 88 VMALEEEFKLE--IPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 88 i~~lEe~fgI~--I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
+..|++.||+. +|.++-..+.|++.++-....+
T Consensus 45 l~dl~e~lg~~~~l~~~~~~~~dTlgGlil~~lg~ 79 (113)
T 3ded_A 45 LDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGR 79 (113)
T ss_dssp HHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHHCS
T ss_pred HHHHHHHhCCCccCCcccCCCCccHHHHHHHHhCC
Confidence 45788999998 8864334678999887655444
No 69
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=32.59 E-value=76 Score=19.30 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=21.7
Q ss_pred HHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 88 VMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 88 i~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
+..+++.||+.++.+ .+.|++.++-....+
T Consensus 26 l~dl~~~l~~~l~~~---~~~TlgG~i~~~lg~ 55 (93)
T 2r2z_A 26 IDEFNEVFETDLHMS---DVDTMAGYLITALGT 55 (93)
T ss_dssp HHHHHHHHTCCCCCT---TCCBHHHHHHHHHSS
T ss_pred HHHHHHHhCCCCCCC---CcccHHHHHHHHhCC
Confidence 346788899999864 478999887654443
No 70
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=32.36 E-value=79 Score=19.24 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=21.7
Q ss_pred HHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 88 VMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 88 i~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
+..+++.||+++|.+ .+.|++.++-....+
T Consensus 28 l~dl~~~l~~~l~~~---~~dTlgG~i~~~lg~ 57 (91)
T 2pli_A 28 IEDINTFFGTEYSSE---EADTIGGLVIQELGH 57 (91)
T ss_dssp HHHHHHHHCCCCCCS---SCCBHHHHHHHHHSS
T ss_pred HHHHHHHhCCCCCCC---CCccHHHHHHHHhCC
Confidence 346788899999863 578998887654443
No 71
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4
Probab=32.03 E-value=85 Score=19.03 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=22.1
Q ss_pred HHHHHHHhCCccChhhcccCccHHHHHHHHHcC
Q 033233 88 VMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 88 i~~lEe~fgI~I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
+..+++.||++++.+ -..+.|++.++-....+
T Consensus 25 l~dl~~~l~~~l~~~-~~~~~TlgG~i~~~lg~ 56 (90)
T 2p13_A 25 IRKASNLLEHDLVDE-AERYSTLGGYLLWQFGY 56 (90)
T ss_dssp HHHHHHHHTSCCCCT-TCCCCBHHHHHHHHHSS
T ss_pred HHHHHHHHCCCCCCc-CCCCccHHHHHHHHhCC
Confidence 346788899999863 12578998887554443
No 72
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=30.43 E-value=89 Score=18.75 Aligned_cols=30 Identities=10% Similarity=0.247 Sum_probs=20.7
Q ss_pred HHHHHHhCCc-cChhhcccCccHHHHHHHHHcC
Q 033233 89 MALEEEFKLE-IPDKEAVRIDACNLAIEYIYNH 120 (124)
Q Consensus 89 ~~lEe~fgI~-I~~~~l~~~~Tv~dlv~~I~~~ 120 (124)
..+++.||++ +|.++ .+.|++.++-....+
T Consensus 20 ~dl~~~l~~~~l~~~~--~~~Tl~G~i~~~lg~ 50 (86)
T 2p4p_A 20 EDVMRALNIHTFPRDE--NYETIGGFMMYMLRX 50 (86)
T ss_dssp HHHHHHTTCCCSCCSC--SSCBHHHHHHHHHCS
T ss_pred HHHHHHhCCCCCCcCC--CCccHHHHHHHHhCC
Confidence 4678889996 87532 578998887554443
No 73
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=30.03 E-value=31 Score=23.21 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=17.2
Q ss_pred CChhhHHHHHHHHHHHhCCcc
Q 033233 79 LDSLDNVEIVMALEEEFKLEI 99 (124)
Q Consensus 79 lDSL~~veli~~lEe~fgI~I 99 (124)
+.=+.+.+|+..||++|||.-
T Consensus 15 ltllE~~eLv~~lee~fgv~a 35 (122)
T 2zjq_5 15 LTIMELADLIDGLKETWGVTA 35 (122)
T ss_pred CCHHHHHHHHHHHHHHcCCCC
Confidence 344678899999999999974
No 74
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=29.77 E-value=32 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.1
Q ss_pred CChhhHHHHHHHHHHHhCCcc
Q 033233 79 LDSLDNVEIVMALEEEFKLEI 99 (124)
Q Consensus 79 lDSL~~veli~~lEe~fgI~I 99 (124)
+.=+.+.+|+..||++|||.-
T Consensus 15 ltllE~~eLv~~lee~fgv~a 35 (125)
T 2j01_L 15 ATVLELKQLIDALKEAWGVTA 35 (125)
T ss_pred CCHHHHHHHHHHHHHHcCCCc
Confidence 344578899999999999974
No 75
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=28.46 E-value=32 Score=22.99 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhCCccChhh
Q 033233 85 VEIVMALEEEFKLEIPDKE 103 (124)
Q Consensus 85 veli~~lEe~fgI~I~~~~ 103 (124)
-+-+..+|+++|+.+|.+-
T Consensus 24 ~e~I~~~E~~Lgi~fP~dY 42 (135)
T 2pag_A 24 EDQLVEIEEQLFINIPFVF 42 (135)
T ss_dssp HHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHCCCCCHHH
Confidence 4567899999999999863
No 76
>3rio_A PTSGHI operon antiterminator; twisted beta sheet, four helix bundle, transcriptional antitermination, transcription; 1.99A {Bacillus subtilis}
Probab=26.37 E-value=40 Score=23.36 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhCCccChhhc
Q 033233 84 NVEIVMALEEEFKLEIPDKEA 104 (124)
Q Consensus 84 ~veli~~lEe~fgI~I~~~~l 104 (124)
+..++..|++.||+.+|+++.
T Consensus 147 a~~~~~~Ie~~~~i~lpedEi 167 (180)
T 3rio_A 147 AKEVIDMINEKAGLCLPEGEI 167 (180)
T ss_dssp HHHHHHHHHHHHTSCCCTTHH
T ss_pred HHHHHHHHHHHHCCCCCHHHH
Confidence 357788899999999999985
No 77
>2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A
Probab=26.31 E-value=2.4 Score=31.50 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccCCChhhHHHHHHHHHHHhC
Q 033233 40 DDHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFK 96 (124)
Q Consensus 40 ~~~M~~~ei~~~l~~il~e~l~v~~~~I~~dt~l~~dLGlDSL~~veli~~lEe~fg 96 (124)
++.-.++++.+.|.++.++++|++. +.+|+ +| +.++..|++.|.
T Consensus 21 ~~~~P~~~~E~~la~iw~~vL~~~~-----~d~Ff-~l-------~~l~~~~~~~f~ 64 (319)
T 2hfk_A 21 MSGADTGAGAGMFRALFRQAVEDDR-----YGEFL-DV-------LAEASAFRPQFA 64 (319)
T ss_dssp ---------CCHHHHHHHHHHHTTC-----HHHHH-HH-------HHHHHTTSCEEC
T ss_pred CCCCCCCchHHHHHHHHHHHHcCCc-----hHHHH-HH-------HHHHHHHHHhcC
Confidence 3334556777889999999999865 67777 55 888888877664
No 78
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=25.04 E-value=52 Score=18.41 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCC
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQV 67 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~I 67 (124)
+.++.+.|.+.+.+.+|++++.+
T Consensus 15 K~~L~~~it~~~~~~lg~~~~~v 37 (62)
T 3m20_A 15 KREFVERLTSVAAEIYGMDRSAI 37 (62)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHHHHhCcCcceE
Confidence 56788899999999999887654
No 79
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=22.91 E-value=59 Score=22.23 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=17.3
Q ss_pred CCChhhHHHHHHHHHHHhCCcc
Q 033233 78 GLDSLDNVEIVMALEEEFKLEI 99 (124)
Q Consensus 78 GlDSL~~veli~~lEe~fgI~I 99 (124)
+|.=|.+.+|+..||++|||.-
T Consensus 12 ~LtllE~~eLv~~leekfgv~a 33 (137)
T 2ftc_E 12 SLTLLEISDLNELLKKTLKIQD 33 (137)
T ss_pred cCCHHHHHHHHHHHHHHhCCCc
Confidence 3444677899999999999963
No 80
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=22.87 E-value=80 Score=19.74 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=25.3
Q ss_pred cccchhhhhccccCCCCCCCHHHHHHHHHHHHhhc
Q 033233 25 QRWSVLGSLRFMSSHDDHLTKEEVIDRVLSVVKCF 59 (124)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~M~~~ei~~~l~~il~e~ 59 (124)
-|.++...+....++-..|..+++.+.+.+||..+
T Consensus 31 kPmTT~dLl~KFK~r~~~~~~~e~v~~~a~ILKki 65 (82)
T 1nha_A 31 KPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRL 65 (82)
T ss_dssp SCBCHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhcccCCCHHHHHHHHHHHHHc
Confidence 35556666777777777788888888888877754
No 81
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=21.36 E-value=47 Score=22.49 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=16.8
Q ss_pred CCChhhHHHHHHHHHHHhCCc
Q 033233 78 GLDSLDNVEIVMALEEEFKLE 98 (124)
Q Consensus 78 GlDSL~~veli~~lEe~fgI~ 98 (124)
++.=+.+.+|+..||++|||.
T Consensus 12 ~ltllE~~eLv~~lee~fgv~ 32 (128)
T 1dd3_A 12 KLTVSELAELVKKLEDKFGVT 32 (128)
T ss_dssp TSCHHHHHHHHHHHHHHHCHH
T ss_pred cCCHHHHHHHHHHHHHHhCCC
Confidence 344467789999999999996
No 82
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=20.97 E-value=56 Score=20.80 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCC
Q 033233 42 HLTKEEVIDRVLSVVKCFPKVDPSQVT 68 (124)
Q Consensus 42 ~M~~~ei~~~l~~il~e~l~v~~~~I~ 68 (124)
+=--+.+.+.|.++|+++..++.+.++
T Consensus 37 pd~l~~lk~eIl~VIsKYv~Id~~~v~ 63 (95)
T 2kxo_A 37 PDYLPTLRKALMEVLSKYVNVSLDNIR 63 (95)
T ss_dssp CCSHHHHHHHHHHHHHHHSCCCTTSEE
T ss_pred HHHHHHHHHHHHHHHHHheecchhheE
Confidence 334589999999999999999876554
No 83
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=20.71 E-value=52 Score=18.08 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCC
Q 033233 45 KEEVIDRVLSVVKCFPKVDPSQ 66 (124)
Q Consensus 45 ~~ei~~~l~~il~e~l~v~~~~ 66 (124)
+.++.+.|.+.+.+.+|++++.
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~ 38 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEE 38 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHhCCCccc
Confidence 5578899999999999987654
No 84
>3d5p_A Putative glucan synthesis regulator of SMI1/KNR4; STR genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Bacteroides fragilis nctc 9343}
Probab=20.14 E-value=58 Score=21.55 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhCCccChh
Q 033233 85 VEIVMALEEEFKLEIPDK 102 (124)
Q Consensus 85 veli~~lEe~fgI~I~~~ 102 (124)
-+-+..+|+++|+.+|.+
T Consensus 17 ~~~I~~~E~~lgi~lP~~ 34 (144)
T 3d5p_A 17 SASIDDVEKLLNTTLPKQ 34 (144)
T ss_dssp HHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHhCCCCCHH
Confidence 356778999999999976
Done!