BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033234
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 75/106 (70%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
++D +D+ + WTG IIGPP T +E RIY LK+ CG YP+ PPSVRF T+INM +N
Sbjct: 35 LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNS 94
Query: 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 106
+GMV+ P+LA WQ Y+++ +L +L++ MMS +N KL QPPEG
Sbjct: 95 SGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 122 bits (306), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 75/106 (70%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
++D +D+ + WTG IIGPP T +E RIY LK+ CG YP+ PPSVRF T+INM +N
Sbjct: 40 LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNS 99
Query: 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 106
+GMV+ P+LA WQ Y+++ +L +L++ MMS +N KL QPPEG
Sbjct: 100 SGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 145
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 75/106 (70%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
++D +D+ + WTG IIGPP T +E RIY LK+ CG YP+ PPSVRF T+INM +N
Sbjct: 29 LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNS 88
Query: 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 106
+GMV+ P+LA WQ Y+++ +L +L++ MMS +N KL QPPEG
Sbjct: 89 SGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 134
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 75/106 (70%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
++D +D+ + WTG IIGPP T +E RIY LK+ CG YP+ PPSVRF T+INM +N
Sbjct: 30 LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNS 89
Query: 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 106
+GMV+ P+LA WQ Y+++ +L +L++ MMS +N KL QPPEG
Sbjct: 90 SGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 135
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 74/106 (69%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
++D +D+ + WTG IIGPP T++E RIY LK+ CG YP+ PP VRF T+INM VN
Sbjct: 60 LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 119
Query: 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 106
G+V+P +LA WQ Y+++ +L +L++ MMS +N KL QPPEG
Sbjct: 120 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 165
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 74/106 (69%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
++D +D+ + WTG IIGPP T++E RIY LK+ CG YP+ PP VRF T+INM VN
Sbjct: 50 LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 109
Query: 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 106
G+V+P +LA WQ Y+++ +L +L++ MMS +N KL QPPEG
Sbjct: 110 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 155
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
+ D+DDI M W GTI+GPP++ HE RIY L + CG +YPD+PP V F ++IN+ CVN
Sbjct: 31 LADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPT 90
Query: 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 106
TG V+ + F L +W+R YTME +L L+KEM +P N KL QP EG
Sbjct: 91 TGEVQ-TDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEG 135
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
+ D+DDI M W GTI+GPP++ HE RIY L + CG +YPD+PP V F ++IN+ CVN
Sbjct: 30 LADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPT 89
Query: 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 106
TG V+ + F L +W+R YTME +L L+KEM +P N KL QP EG
Sbjct: 90 TGEVQ-TDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEG 134
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 74/106 (69%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
++D +D+ + WTG I+GPP T++E RIY LK+ CG YP+ PP VRF T+INM VN
Sbjct: 32 LEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 91
Query: 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 106
G+V+P +LA WQ Y+++ +L +L++ MMS +N KL QPPEG
Sbjct: 92 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 137
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
++ ADDI + +W+ TI G P TV E RIY L +FC +YPD+PP+V+F T+I M+CV+
Sbjct: 46 LESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN- 104
Query: 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 106
G V + +L NW R YT+E IL L++EM+S N +L QP EG
Sbjct: 105 CGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEG 150
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
++ ADDI + +W+ TI G P TV E RIY L +FC +YPD+PP+V+F T+I M+CV+
Sbjct: 50 LESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN- 108
Query: 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEG 106
G V + +L NW R YT+E IL L++EM+S N +L QP EG
Sbjct: 109 CGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEG 154
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ W TI+GPP +V+EG ++ L + DYP PP V F+TRI +N + G++ L
Sbjct: 32 IYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQ-GVI--CL 88
Query: 69 FPMLANWQREYTMEDILTQL 88
+ NW T+ +L +
Sbjct: 89 DILKDNWSPALTISKVLLSI 108
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 12 WTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPM 71
W TI+GPP +V+EG ++ L + +YP PP V F+TRI +N + G++ L +
Sbjct: 80 WRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQ-GVI--CLDIL 136
Query: 72 LANWQREYTMEDILTQL 88
NW T+ +L +
Sbjct: 137 KDNWSPALTISKVLLSI 153
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + SL
Sbjct: 30 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSI---SL 86
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ + W T+ +L + + P
Sbjct: 87 DILRSQWSPALTISKVLLSICSLLCDP 113
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 3 DADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETG 62
D D++ W T+ GP +TV+E Y+L L +DYP PP V+F T V+Q
Sbjct: 34 DGDNLF--KWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGN 91
Query: 63 MVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQN 97
+ L + NW Y + IL L+ + P N
Sbjct: 92 IC---LDILKENWTASYDVRTILLSLQSLLGEPNN 123
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM 63
DD+ W TI+GPP + ++G ++ L + TDYP PP V F TRI +N +
Sbjct: 30 GDDLF--HWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 87
Query: 64 VEPSLFPMLANWQREYTMEDILTQLKKEMMSP 95
L + + W T+ +L + + P
Sbjct: 88 C---LDILRSQWSPALTISKVLLSICSLLCDP 116
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM 63
DD+ W TI+GPP++ ++G ++ L + TDYP PP + F T+I +N +
Sbjct: 33 GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90
Query: 64 VEPSLFPMLANWQREYTMEDILTQL 88
L + + W T+ +L +
Sbjct: 91 ---KLDILRSQWSPALTVSKVLLSI 112
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM 63
DD+ W TI+GPP++ ++G ++ L + TDYP PP + F T+I +N +
Sbjct: 33 GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90
Query: 64 VEPSLFPMLANWQREYTMEDILTQLKKEMMSP 95
L + + W T+ +L + + P
Sbjct: 91 C---LDILRSQWSPALTVSKVLLSICSLLCDP 119
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM 63
DD+ W TI+GPP++ ++G ++ L + TDYP PP + F T+I +N +
Sbjct: 29 GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 86
Query: 64 VEPSLFPMLANWQREYTMEDILTQLKKEMMSP 95
L + + W T+ +L + + P
Sbjct: 87 C---LDILRSQWSPALTVSKVLLSICSLLCDP 115
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM 63
DD+ W TI+GPP++ ++G ++ L + TDYP PP + F T+I +N +
Sbjct: 45 GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 102
Query: 64 VEPSLFPMLANWQREYTMEDILTQL 88
L + + W T+ +L +
Sbjct: 103 C---LDILRSQWSPALTVSKVLLSI 124
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + SL
Sbjct: 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI---SL 88
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ + W T+ +L + + P
Sbjct: 89 DILRSQWSPALTISKVLLSICSLLCDP 115
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 12 WTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPM 71
W G I GP T +EG + L + DYP NPP ++F T+I ++ +TG + L +
Sbjct: 55 WVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAI--CLDVL 112
Query: 72 LANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEGNEDARM--DHKGLVLKCC 122
W T+ L ++ + PQ P+ E A+M ++ L +K
Sbjct: 113 KNEWSPALTIRTALLSIQALLSDPQ----PDDPQDAEVAKMYKENHALFVKTA 161
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 14 GTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMV 64
G I GPP+T +EG YQL++ YP NPP VRF T+I ++ TG +
Sbjct: 45 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 95
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 14 GTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMV 64
G I GPP+T +EG YQL++ YP NPP VRF T+I ++ TG +
Sbjct: 94 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 144
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + SL
Sbjct: 33 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI---SL 89
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ + W T+ +L + + P
Sbjct: 90 DILRSQWSPALTISKVLLSICSLLCDP 116
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 14 GTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMV 64
G I GPP+T +EG YQL++ YP NPP VRF T+I ++ TG +
Sbjct: 43 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 93
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + SL
Sbjct: 30 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI---SL 86
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ + W T+ +L + + P
Sbjct: 87 DILRSQWSPALTISKVLLSICSLLCDP 113
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 14 GTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMV 64
G I GPP+T +EG YQL++ YP NPP VRF T+I ++ TG +
Sbjct: 42 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 92
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 14 GTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMV 64
G I GPP+T +EG YQL++ YP NPP VRF T+I ++ TG +
Sbjct: 58 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 108
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---L 88
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ + W T+ +L + + P
Sbjct: 89 DALRSQWSPALTISKVLLSICSLLCDP 115
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM 63
DD+ W TI+GP ++ + G ++ L + TDYP PP V F TRI +N +
Sbjct: 27 GDDLFH--WQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSI 84
Query: 64 VEPSLFPMLANWQREYTMEDILTQLKKEMMSPQ 96
L + W T+ +L + + P
Sbjct: 85 C---LDILRDQWSPALTISKVLLSISSLLTDPN 114
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---L 88
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSPQ 96
+ + W T+ +L + + P
Sbjct: 89 DILRSQWSPALTISKVLLSICSLLCDPN 116
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 30 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---L 86
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ + W T+ +L + + P
Sbjct: 87 DILRSQWSPALTISKVLLSICSLLCDP 113
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 35 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---L 91
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ + W T+ +L + + P
Sbjct: 92 DILRSQWSPALTISKVLLSICSLLCDP 118
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 29 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---L 85
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSPQ 96
+ + W T+ +L + + P
Sbjct: 86 DILRSQWSPALTISKVLLSICSLLCDPN 113
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---L 88
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ + W T+ +L + + P
Sbjct: 89 DILRSQWSPALTISKVLLSICSLLCDP 115
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---L 88
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ + W T+ +L + + P
Sbjct: 89 DILRSQWSPALTISKVLLSICSLLCDP 115
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 12 WTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPM 71
W I GP +T +G ++L L DYP+ PP+VRF +R+ + + + +
Sbjct: 36 WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSIC----LDI 91
Query: 72 LAN-WQREYTMEDILTQLKKEMMSPQNWKLAQPPEGNEDARM 112
L N W Y + ILT ++ + P P +E ARM
Sbjct: 92 LQNQWSPIYDVAAILTSIQSLLCDPN----PNSPANSEAARM 129
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 40 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---L 96
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSPQ 96
+ + W T+ +L + + P
Sbjct: 97 DILRSQWSPALTISKVLLSICSLLCDPN 124
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 48 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI---XL 104
Query: 69 FPMLANWQREYTMEDILTQL 88
+ + W T+ +L +
Sbjct: 105 DILRSQWSPALTISKVLLSI 124
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 40 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---L 96
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ + W T+ +L + + P
Sbjct: 97 DILRSQWSPALTISKVLLSICSLLCDP 123
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 38 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---L 94
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSPQ 96
+ + W T+ +L + + P
Sbjct: 95 DILRSQWSPALTISKVLLSICSLLCDPN 122
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + SL
Sbjct: 29 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI---SL 85
Query: 69 FPMLANWQREYTMEDILTQL 88
+ + W + +L +
Sbjct: 86 DILRSQWSPALKISKVLLSI 105
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 48 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---L 104
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ + W T+ +L + + P
Sbjct: 105 DILRSQWSPALTISKVLLSICSLLCDP 131
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRI 52
+D+ D + +W I GPPNT +EG ++ +L DYP +PP+ RF T++
Sbjct: 29 VDEGD---LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKM 77
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 32 MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---L 88
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ + W T+ +L + + P
Sbjct: 89 DILRSQWGPALTISKVLLSICSLLCDP 115
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRI 52
+D+ D + +W I GPPNT +EG ++ +L DYP +PP+ RF T++
Sbjct: 32 VDEGD---LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKM 80
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ W G I GP T +EG + L + DYP NPP ++F T+I ++ +TG + L
Sbjct: 74 IHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAI--CL 131
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ W T+ L ++ + P
Sbjct: 132 DILKHEWSPALTIRTALLSIQAMLADP 158
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM 63
DD+ W TI+GP ++ ++G ++ L + TDYP PP V F T+I +N +
Sbjct: 32 GDDLF--HWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSI 89
Query: 64 VEPSLFPMLANWQREYTMEDILTQLKKEMMSP 95
L + + W T+ +L + + P
Sbjct: 90 C---LDILRSQWSPALTVSKVLLSICSLLCDP 118
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W TI+GP ++ + G ++ L + +DYP PP V F T+I +N + + L
Sbjct: 50 MFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAIC---L 106
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ W T+ +L + + P
Sbjct: 107 DILKDQWSPALTISKVLLSISSLLTDP 133
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 5 DDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRI 52
DD + W IIGPP+T++EG +++ L DYP PP ++F T I
Sbjct: 43 DDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 90
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W T +GP ++ ++G ++ L + TDYP PP V F TRI +N + L
Sbjct: 32 MFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---L 88
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ + W T+ +L + + P
Sbjct: 89 DILRSQWSPALTISKVLLSICSLLCDP 115
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 14 GTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLA 73
GT +GPP T +EG + + + +YP PP ++F T++ ++ TG + +L
Sbjct: 36 GTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI---CLDILK 92
Query: 74 N-WQREYTMEDILTQLKKEMMSPQ 96
N W T++ L L+ + SP+
Sbjct: 93 NAWSPVITLKSALISLQALLQSPE 116
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
DD + W +IGPP+T++EG ++ L DYP PP ++F + I +++E
Sbjct: 28 VDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKE 84
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ GT +GPP T +EG + + + +YP PP ++F T++ ++ TG +
Sbjct: 32 IHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI---C 88
Query: 69 FPMLAN-WQREYTMEDILTQLKKEMMSPQ 96
+L N W T++ L L+ + SP+
Sbjct: 89 LDILRNAWSPVITLKSALISLQALLQSPE 117
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
++ + TI GP + +E I++L+L+ DYP P VRF T+I +++ G + SL
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDR-LGRI--SL 88
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ NW + +L ++ + SP
Sbjct: 89 DVLKTNWSPALQIRTVLLSIQALLASP 115
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ W +I+GP ++ + G ++ L + TDYP PP + F T+I +N + L
Sbjct: 31 LYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNIC---L 87
Query: 69 FPMLANWQREYTMEDILTQL 88
+ W T+ +L +
Sbjct: 88 DILKDQWSPALTLSKVLLSI 107
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
++ + TI GP + +E I++L+L+ DYP P VRF T+I +++ G + SL
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR-LGRI--SL 88
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ NW + +L ++ + SP
Sbjct: 89 DVLKTNWSPALQIRTVLLSIQALLASP 115
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM 63
DDI WT TI GP ++ ++G ++ L + DYP P V F T++ +N+ G+
Sbjct: 30 GDDIF--HWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKN-GV 86
Query: 64 VEPSLFPMLANWQREYTMEDILTQLKKEMMSP 95
+ L + W T+ +L + + P
Sbjct: 87 I--CLDILKDQWSPALTLSRVLLSISSLLTDP 116
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 12 WTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPM 71
W GTI G TV+E Y+L L + YP N P+V+F T V+ + + SL +
Sbjct: 62 WVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNI---SLDIL 118
Query: 72 LANWQREYTMEDILTQLKKEMMSP 95
W Y + IL ++ + P
Sbjct: 119 KEKWSALYDVRTILLSIQSLLGEP 142
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM 63
+++ +MQ W I GP T E ++L + +YP+ PP+VRF +++ V + +
Sbjct: 29 SENNIMQ-WNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSI 87
Query: 64 VEPSLFPMLAN-WQREYTMEDILTQLKKEM-----MSPQNWKLAQ 102
+L N W Y + ILT ++ + SP N + AQ
Sbjct: 88 C----LDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQ 128
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 16 IIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRI 52
I GP T +EG Y+L+LF YP PP VRF T+I
Sbjct: 37 INGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 16 IIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRI 52
I GP T +EG Y+L+LF YP PP VRF T+I
Sbjct: 37 INGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
++ + TI GP + +E I++L+L+ DYP P VRF T+I +++ G + L
Sbjct: 34 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR-LGRI--CL 90
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ NW + +L ++ + SP
Sbjct: 91 DVLKTNWSPALQIRTVLLSIQALLASP 117
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
++ + TI GP + +E I++L+L+ DYP P VRF T+I +++ G + L
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR-LGRI--CL 88
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+ NW + +L ++ + SP
Sbjct: 89 DVLKTNWSPALQIRTVLLSIQALLASP 115
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 9 MQSWTGTIIGPPNTVH--EGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM 63
+ +W + P ++V+ G YQL + DYP PP+VRF T + V E G+
Sbjct: 49 IYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGI 105
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
M W I G N+V +G ++QL + ++Y PP V+F T V+ TG
Sbjct: 52 MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDF 111
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEGNEDARMDHKGLVLKCCIL 124
W YT+ IL L+ + +P + + P E AR+ K L IL
Sbjct: 112 LDNPEKWNTNYTLSSILLALQVMLSNP----VLENPVNLEAARILVKDESLYRTIL 163
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 15 TIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLAN 74
TI GP T + G ++++KL G D+P +PP F T+I V E + + +
Sbjct: 48 TIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANG---EICVNVLKRD 104
Query: 75 WQREYTMEDILTQLKKEMMSPQ 96
W E + +L +K ++ P
Sbjct: 105 WTAELGIRHVLLTIKCLLIHPN 126
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ +W I G T EG +++L++ DYP +PP +F+ + V +G V S+
Sbjct: 38 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVSLSI 96
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+W+ T++ IL +++ + P
Sbjct: 97 LEEDKDWRPAITIKQILLGIQELLNEP 123
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 5 DDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMV 64
D+IL +W I GP T E ++L L +YP+ PP+V+F +++ V + +
Sbjct: 31 DNIL--TWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSIC 88
Query: 65 EPSLFPMLAN-WQREYTMEDILTQLKKEMMSP 95
+L N W Y + ILT ++ + P
Sbjct: 89 ----LDILQNRWSPTYDVAAILTSIQSLLDEP 116
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 5 DDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMV 64
D+IL +W I GP T E ++L L +YP+ PP+V+F +++ V + +
Sbjct: 34 DNIL--TWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSIC 91
Query: 65 EPSLFPMLAN-WQREYTMEDILTQLKKEMMSP 95
+L N W Y + ILT ++ + P
Sbjct: 92 ----LDILQNRWSPTYDVAAILTSIQSLLDEP 119
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ +W I G T EG +++L++ DYP +PP +F+ + V +G V S+
Sbjct: 38 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVXLSI 96
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+W+ T++ IL +++ + P
Sbjct: 97 LEEDKDWRPAITIKQILLGIQELLNEP 123
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 12 WTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPM 71
W IIGP +T +E ++L L +YP+ PP V+F + + V + +
Sbjct: 36 WNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEIC----LDI 91
Query: 72 LAN-WQREYTMEDILTQLKKEMMSPQNWKLAQPPEGNEDARM--DHKGLVLK 120
L N W Y + ILT ++ P P E A + DHK +K
Sbjct: 92 LQNRWTPTYDVASILTSIQSLFNDPN----PASPANVEAATLFKDHKSQYVK 139
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ +W I G T EG +++L++ DYP +PP +F+ + V +G V S+
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-APSGTVCLSI 99
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+W+ T++ IL +++ + P
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEP 126
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ +W I G T EG +++L++ DYP +PP +F+ + V +G V S+
Sbjct: 40 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 98
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+W+ T++ IL +++ + P
Sbjct: 99 LEEDKDWRPAITIKQILLGIQELLNEP 125
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ +W I G T EG +++L++ DYP +PP +F+ + V +G V S+
Sbjct: 43 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 101
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+W+ T++ IL +++ + P
Sbjct: 102 LEEDKDWRPAITIKQILLGIQELLNEP 128
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ +W I G T EG +++L++ DYP +PP +F+ + V +G V S+
Sbjct: 40 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 98
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+W+ T++ IL +++ + P
Sbjct: 99 LEEDKDWRPAITIKQILLGIQELLNEP 125
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ +W I G T EG +++L++ DYP +PP +F+ + V +G V S+
Sbjct: 38 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 96
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+W+ T++ IL +++ + P
Sbjct: 97 LEEDKDWRPAITIKQILLGIQELLNEP 123
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ +W I G T EG +++L++ DYP +PP +F+ + V +G V S+
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 99
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+W+ T++ IL +++ + P
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEP 126
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 15 TIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQ 59
I GP ++ EG ++L+LF +YP P VRF T+I V++
Sbjct: 43 VIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 87
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ +W I G T EG +++L++ DYP +PP +F+ + V +G V S+
Sbjct: 39 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 97
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+W+ T++ IL +++ + P
Sbjct: 98 LEEDKDWRPAITIKQILLGIQELLNEP 124
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 15 TIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQ 59
I GP ++ EG ++L+LF +YP P VRF T+I V++
Sbjct: 36 VIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 80
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 15 TIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQ 59
I GP ++ EG ++L+LF +YP P VRF T+I V++
Sbjct: 38 VIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 82
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 15 TIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQ 59
I GP ++ EG ++L+LF +YP P VRF T+I V++
Sbjct: 40 VIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 84
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ +W I G T EG +++L++ DYP +PP +F+ + V +G V S+
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQV-YPSGTVCLSI 99
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+W+ T++ IL +++ + P
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEP 126
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 155
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 15 TIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQ 59
I GP ++ EG ++L+LF +YP P VRF T+I V++
Sbjct: 41 VIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 85
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ +W I G T EG +++L++ DYP +PP +F+ + V +G V S+
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 99
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+W+ T++ IL +++ + P
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEP 126
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ +W I G T EG +++L++ DYP +PP +F+ + V +G V S+
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 99
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSP 95
+W+ T++ IL +++ + P
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEP 126
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRF-QTRINMTCVNQ 59
++ D+ + W I GP +T +E +++ + + YP NPP + F Q I + V
Sbjct: 39 LNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKS 98
Query: 60 ETGMV 64
TG +
Sbjct: 99 ATGEI 103
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 2 DDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQET 61
D DD+ Q I+G NT +E +++L++ YP PP +RF T I ++
Sbjct: 31 DQMDDLRAQ-----ILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAG 85
Query: 62 GMVEPSL-FPMLANWQREYTMEDILTQLKKEMMSP 95
+ L P W+ + +LT ++ M P
Sbjct: 86 RICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEP 120
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ +W I G P T EG +Y+L + +YP PP RF + V +G V S+
Sbjct: 44 LMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNV-YPSGTVCLSI 102
Query: 69 FPMLANWQREYTMEDIL 85
W+ T++ IL
Sbjct: 103 LNEEEGWKPAITIKQIL 119
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTR 51
++ W +G NT++ +Y+LK+ DYP PP V F +
Sbjct: 35 IRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK 77
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTC-VNQ 59
++ D+ + W I GP +T +E +++ + + YP NPP + F + C V
Sbjct: 39 LNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKS 98
Query: 60 ETGMV 64
TG +
Sbjct: 99 ATGEI 103
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTC-VNQ 59
++ D+ + W I GP +T +E +++ + + YP NPP + F + C V
Sbjct: 39 LNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKS 98
Query: 60 ETGMV 64
TG +
Sbjct: 99 ATGEI 103
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 5 DDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMV 64
D+ + +W G I+ P N ++ +++++ +YP PP + F+T+I ++++ +
Sbjct: 28 DEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVC 86
Query: 65 EPSLFPMLANWQREYTMEDILTQLKKEMMSPQ 96
P + NW+ + ++ L + PQ
Sbjct: 87 LPVI--SAENWKPATKTDQVIQSLIALVNDPQ 116
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 5 DDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMV 64
D+ + +W G I+ P N ++ +++++ +YP PP + F+T+I ++++ +
Sbjct: 30 DEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVC 88
Query: 65 EPSLFPMLANWQREYTMEDILTQLKKEMMSPQ 96
P + NW+ + ++ L + PQ
Sbjct: 89 LPVI--SAENWKPATKTDQVIQSLIALVNDPQ 118
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 18 GPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMV 64
GP T +EG I+++ + DYP PS+ F ++ V++ +G V
Sbjct: 37 GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSV 83
>pdb|3RBT|A Chain A, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|B Chain B, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|C Chain C, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|D Chain D, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
Length = 246
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 54 MTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNW 98
+ CVN + + SLFP A+W + ++DI +KK SPQ +
Sbjct: 189 LRCVNDRKFVEKKSLFPNFADWGDQMQLDDI---VKKHAHSPQEY 230
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+Q W I G T G +Y + + +YP PP V+F V +G + S+
Sbjct: 40 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV-YPSGTICLSI 98
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEGNEDAR 111
+W+ T++ I+ ++ + SP AQ P +R
Sbjct: 99 LNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSR 141
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+Q W I G T G +Y + + +YP PP V+F V +G + S+
Sbjct: 38 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV-YPSGTICLSI 96
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEGNEDAR 111
+W+ T++ I+ ++ + SP AQ P +R
Sbjct: 97 LNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSR 139
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br
Domain Of Gp78 At 1.8-A Resolution
Length = 164
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 12 WTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFP 70
W I+GP +T E ++ L DYP +PP +RF TC M P+++P
Sbjct: 36 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRF------TC-----EMFHPNIYP 83
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
Length = 168
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 12 WTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFP 70
W I+GP +T E ++ L DYP +PP +RF TC M P+++P
Sbjct: 40 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRF------TC-----EMFHPNIYP 87
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 12 WTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRI 52
W I GPP+T + ++ KL DYP +PP + F I
Sbjct: 37 WDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSI 77
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 12 WTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFP 70
W I+GP +T E ++ L DYP +PP +RF TC M P+++P
Sbjct: 39 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRF------TC-----EMFHPNIYP 86
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 12 WTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFP 70
W I+GP +T E ++ L DYP +PP +RF TC M P+++P
Sbjct: 42 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRF------TC-----EMFHPNIYP 89
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
Length = 136
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRF 48
++ W +G NT++ +Y++K+ +YP PP V F
Sbjct: 49 IRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYF 88
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 6 DILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVE 65
D + + W GP T +E + L + +DYP PS+ F RI V++ +G V
Sbjct: 35 DTVAEFWV-EFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSV- 92
Query: 66 PSLFPMLANWQREYTMEDILTQLKKEMM 93
L + W Y +E+I +++
Sbjct: 93 -CLDVINQTWTPMYQLENIFDVFLPQLL 119
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 9 MQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSL 68
+ + GP T +EG ++++++ YP PS+ F +I +++ +G V L
Sbjct: 50 LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTV--CL 107
Query: 69 FPMLANWQREYTMEDILTQLKKEMMSPQN 97
+ W Y + +I ++++ N
Sbjct: 108 DVINQTWTALYDLTNIFESFLPQLLAYPN 136
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical
Ubiquitin-Conjugating Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical
Ubiquitin-Conjugating Enzyme, Loc55284
Length = 136
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 12 WTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRF 48
W + G P T++EG +QL + YP + P V F
Sbjct: 56 WIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMF 92
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 12 WTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPM 71
W + GP T +EG Y KL ++P PPS+ T N + P
Sbjct: 46 WHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHP- 104
Query: 72 LANWQREYTMEDILTQLKKEMM 93
W +++ ILT L M+
Sbjct: 105 -DTWNPAWSVSTILTGLLSFMV 125
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 16 IIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQT 50
I GP +T + ++ ++ DYP +PP V +T
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 150
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
D DD+L +I P ++ + G YP +PP V+ +T + ++ E
Sbjct: 28 FSDPDDLLNFKL---VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLE 84
Query: 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSP 95
+ L + +W+ T+ I+ L+ + P
Sbjct: 85 GNVC---LNILREDWKPVLTINSIIYGLQYLFLEP 116
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQE 60
D DD+L +I P ++ + G YP +PP V+ +T + ++ E
Sbjct: 48 FSDPDDLLN---FKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLE 104
Query: 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSP 95
+ +L + +W+ T+ I+ L+ + P
Sbjct: 105 GNV---ALNILREDWKPVLTINSIIYGLQYLFLEP 136
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM 63
+DD + W ++ P + + + L++ +YP PP ++F T+I V++ +
Sbjct: 29 SDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQI 87
Query: 64 VEP 66
P
Sbjct: 88 CLP 90
>pdb|1VPH|A Chain A, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|B Chain B, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|C Chain C, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|D Chain D, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|E Chain E, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
pdb|1VPH|F Chain F, Crystal Structure Of A Ybjq-Like Protein Of Unknown
Function (Sso2532) From Sulfolobus Solfataricus P2 At
1.76 A Resolution
Length = 149
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 63 MVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWK 99
V S ++AN MEDILT++K+ ++WK
Sbjct: 54 FVAHSTAAIVANEHERGLMEDILTKIKEFTEPSRSWK 90
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
Length = 152
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM 63
+DD + W ++ P + + + L++ +YP PP ++F T+I V++ +
Sbjct: 26 SDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQI 84
Query: 64 VEP 66
P
Sbjct: 85 CLP 87
>pdb|2DRV|A Chain A, Structure Of Ph1069 Protein From Pyrococcus Horikoshii Ot3
pdb|2DRV|B Chain B, Structure Of Ph1069 Protein From Pyrococcus Horikoshii Ot3
pdb|2IT2|A Chain A, Structure Of Ph1069 Protein From Pyrococcus Horikoshii
pdb|2IT2|B Chain B, Structure Of Ph1069 Protein From Pyrococcus Horikoshii
pdb|2IT3|A Chain A, Structure Of Ph1069 Protein From Pyrococcus Horikoshii
pdb|2IT3|B Chain B, Structure Of Ph1069 Protein From Pyrococcus Horikoshii
Length = 200
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 72 LANWQREYTMEDILTQLKKEMMSPQNWKLAQPP 104
L W RE ++ ++L +KK S Q W L + P
Sbjct: 75 LGKWHREVSLYEVLEAIKKH-RSGQLWFLVRSP 106
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 16 IIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM--VEPSLFPML 72
I+G NT+ + L LF D P VR N+ CVN+ G+ + SL P +
Sbjct: 348 ILGKDNTIE----HLLPLFLA-QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI 401
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 55 TCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQ 102
T N T + + F L N E M+D T +M P +LAQ
Sbjct: 222 TATNDSTYITDAEQFITLGNTMNENKMQDKWTMCWDDMYVPAALRLAQ 269
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 16 IIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM--VEPSLFPML 72
I+G NT+ + L LF D P VR N+ CVN+ G+ + SL P +
Sbjct: 354 ILGKDNTIE----HLLPLFLA-QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI 407
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 16 IIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM--VEPSLFPML 72
I+G NT+ + L LF D P VR N+ CVN+ G+ + SL P +
Sbjct: 354 ILGKDNTIE----HLLPLFLA-QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI 407
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 16 IIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM--VEPSLFPML 72
I+G NT+ + L LF D P VR N+ CVN+ G+ + SL P +
Sbjct: 346 ILGKDNTIE----HLLPLFLA-QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI 399
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 16 IIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM--VEPSLFPML 72
I+G NT+ + L LF D P VR N+ CVN+ G+ + SL P +
Sbjct: 355 ILGKDNTIE----HLLPLFLA-QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI 408
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 16 IIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM--VEPSLFPML 72
I+G NT+ + L LF D P VR N+ CVN+ G+ + SL P +
Sbjct: 355 ILGKDNTIE----HLLPLFLA-QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI 408
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 16 IIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGM--VEPSLFPML 72
I+G NT+ + L LF D P VR N+ CVN+ G+ + SL P +
Sbjct: 348 ILGKDNTIE----HLLPLFLA-QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI 401
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,313,596
Number of Sequences: 62578
Number of extensions: 165080
Number of successful extensions: 414
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 127
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)