Query 033234
Match_columns 124
No_of_seqs 117 out of 1140
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:26:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.2E-41 2.7E-46 236.8 8.1 102 3-109 26-127 (148)
2 COG5078 Ubiquitin-protein liga 100.0 4.6E-41 9.9E-46 237.6 8.5 104 3-111 31-134 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 2.1E-38 4.5E-43 216.2 7.4 102 3-109 29-130 (152)
4 KOG0425 Ubiquitin-protein liga 100.0 5.7E-38 1.2E-42 219.5 5.8 119 1-122 29-160 (171)
5 PTZ00390 ubiquitin-conjugating 100.0 7.6E-37 1.7E-41 216.9 8.7 103 3-110 27-129 (152)
6 PLN00172 ubiquitin conjugating 100.0 1.2E-36 2.5E-41 214.9 8.6 102 3-109 26-127 (147)
7 KOG0424 Ubiquitin-protein liga 100.0 5.9E-36 1.3E-40 206.7 8.0 103 4-109 35-137 (158)
8 KOG0421 Ubiquitin-protein liga 100.0 5.1E-35 1.1E-39 202.4 5.1 105 1-110 52-156 (175)
9 KOG0418 Ubiquitin-protein liga 100.0 1.3E-34 2.9E-39 207.8 6.2 101 5-109 33-133 (200)
10 PF00179 UQ_con: Ubiquitin-con 100.0 9.3E-34 2E-38 197.8 6.9 101 5-109 25-125 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 2.4E-32 5.2E-37 190.9 8.5 104 3-110 24-127 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 1.2E-31 2.7E-36 188.2 8.8 102 5-110 26-127 (145)
13 KOG0422 Ubiquitin-protein liga 100.0 4.4E-31 9.5E-36 181.7 8.5 103 2-109 27-129 (153)
14 KOG0426 Ubiquitin-protein liga 100.0 4.9E-31 1.1E-35 180.4 6.8 104 3-109 30-144 (165)
15 KOG0416 Ubiquitin-protein liga 100.0 4.7E-31 1E-35 186.9 6.2 98 10-109 30-128 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 3.9E-29 8.6E-34 177.3 6.0 102 4-109 54-155 (184)
17 KOG0423 Ubiquitin-protein liga 99.9 9.5E-27 2.1E-31 165.7 0.6 103 2-109 34-136 (223)
18 KOG0427 Ubiquitin conjugating 99.9 1.3E-24 2.8E-29 148.6 8.6 102 4-112 40-142 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 7.1E-23 1.5E-27 150.1 8.9 112 2-118 29-143 (244)
20 KOG0896 Ubiquitin-conjugating 99.8 2.2E-19 4.7E-24 123.2 7.7 109 1-109 30-138 (138)
21 KOG0428 Non-canonical ubiquiti 99.8 3.7E-19 8E-24 133.1 8.4 111 3-122 35-151 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 1.8E-16 4E-21 136.6 2.8 102 4-108 877-992 (1101)
23 KOG0429 Ubiquitin-conjugating 99.5 9.3E-15 2E-19 108.0 6.2 99 6-109 47-150 (258)
24 KOG0895 Ubiquitin-conjugating 99.4 2.7E-12 5.8E-17 111.3 8.7 89 3-94 307-404 (1101)
25 KOG0897 Predicted ubiquitin-co 98.8 6.4E-09 1.4E-13 69.9 3.2 66 29-95 13-78 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.4 6.8E-07 1.5E-11 62.0 4.9 67 25-94 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.3 8.1E-07 1.8E-11 60.8 3.3 76 11-94 34-117 (121)
28 KOG2391 Vacuolar sorting prote 97.3 0.00069 1.5E-08 53.6 6.1 71 21-95 60-138 (365)
29 PF14457 Prok-E2_A: Prokaryoti 95.7 0.019 4.1E-07 41.2 4.3 62 31-94 57-126 (162)
30 PF05773 RWD: RWD domain; Int 94.5 0.1 2.3E-06 33.8 4.9 41 11-51 31-73 (113)
31 PF14462 Prok-E2_E: Prokaryoti 93.6 1 2.2E-05 31.0 8.3 74 16-93 29-120 (122)
32 smart00591 RWD domain in RING 93.5 0.29 6.2E-06 31.5 5.5 26 25-50 39-64 (107)
33 PF08694 UFC1: Ubiquitin-fold 93.1 0.14 2.9E-06 36.2 3.5 73 11-85 49-135 (161)
34 KOG3357 Uncharacterized conser 71.6 13 0.00028 25.9 5.0 72 11-84 52-137 (167)
35 PF06113 BRE: Brain and reprod 64.1 66 0.0014 25.8 8.2 59 23-90 61-122 (333)
36 cd03457 intradiol_dioxygenase_ 61.4 9.6 0.00021 27.9 2.9 26 25-50 85-110 (188)
37 cd00421 intradiol_dioxygenase 61.4 9.9 0.00021 26.4 2.9 25 26-50 65-90 (146)
38 KOG0309 Conserved WD40 repeat- 54.1 29 0.00063 31.1 4.9 41 10-51 449-491 (1081)
39 PF06113 BRE: Brain and reprod 53.1 16 0.00034 29.3 3.1 27 27-54 306-332 (333)
40 cd03459 3,4-PCD Protocatechuat 51.9 18 0.00038 25.8 2.9 30 26-57 72-106 (158)
41 KOG4018 Uncharacterized conser 51.6 14 0.0003 27.8 2.4 20 28-47 50-69 (215)
42 PF03366 YEATS: YEATS family; 51.4 40 0.00087 21.4 4.2 32 10-41 2-33 (84)
43 PF09765 WD-3: WD-repeat regio 49.3 6.6 0.00014 30.7 0.4 59 11-92 127-186 (291)
44 TIGR02423 protocat_alph protoc 40.2 32 0.0007 25.3 2.8 25 26-50 96-125 (193)
45 cd03463 3,4-PCD_alpha Protocat 38.4 37 0.0008 24.8 2.9 29 26-56 92-125 (185)
46 PF04881 Adeno_GP19K: Adenovir 37.3 38 0.00082 23.6 2.6 29 5-35 45-74 (139)
47 KOG0177 20S proteasome, regula 36.2 11 0.00024 27.8 -0.1 40 61-102 135-174 (200)
48 COG3866 PelB Pectate lyase [Ca 32.0 74 0.0016 25.5 3.8 39 11-50 198-240 (345)
49 TIGR02439 catechol_proteo cate 29.5 61 0.0013 25.4 2.9 25 26-50 180-222 (285)
50 cd03461 1,2-HQD Hydroxyquinol 26.2 74 0.0016 24.8 2.9 25 26-50 172-214 (277)
51 cd03460 1,2-CTD Catechol 1,2 d 24.3 85 0.0018 24.6 2.9 25 26-50 176-218 (282)
52 KOG1047 Bifunctional leukotrie 24.2 76 0.0016 27.4 2.8 30 22-52 248-280 (613)
53 TIGR02438 catachol_actin catec 24.0 83 0.0018 24.6 2.8 25 26-50 184-226 (281)
54 KOG3696 Aspartyl beta-hydroxyl 23.7 52 0.0011 26.3 1.6 23 37-59 303-325 (334)
55 KOG4445 Uncharacterized conser 22.9 83 0.0018 25.2 2.6 25 27-51 45-69 (368)
56 cd03464 3,4-PCD_beta Protocate 22.4 97 0.0021 23.3 2.8 24 26-49 122-152 (220)
57 TIGR02422 protocat_beta protoc 21.8 1E+02 0.0022 23.2 2.8 24 26-49 117-147 (220)
58 KOG3203 Mitochondrial/chloropl 21.0 53 0.0011 23.6 1.1 14 51-66 50-63 (165)
59 TIGR02465 chlorocat_1_2 chloro 20.8 1.1E+02 0.0024 23.4 2.9 26 25-50 149-192 (246)
60 PF14455 Metal_CEHH: Predicted 20.6 2E+02 0.0044 20.7 4.0 22 29-51 55-76 (177)
61 PF00845 Gemini_BL1: Geminivir 20.2 1.9E+02 0.0042 22.4 4.0 42 11-53 104-154 (276)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-41 Score=236.84 Aligned_cols=102 Identities=25% Similarity=0.515 Sum_probs=99.0
Q ss_pred CCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCHH
Q 033234 3 DADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTME 82 (124)
Q Consensus 3 ~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~ 82 (124)
++||++ +|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+. +|.||+++| +++|+|+++++
T Consensus 26 ~~dnl~--~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~-~G~IclDIL--k~~WsPAl~i~ 100 (148)
T KOG0417|consen 26 VGDNLF--HWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS-NGRICLDIL--KDQWSPALTIS 100 (148)
T ss_pred CCCcee--eEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc-cccchHHhh--hccCChhhHHH
Confidence 578999 9999999999999999999999999999999999999999999999995 999999999 58899999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccCccc
Q 033234 83 DILTQLKKEMMSPQNWKLAQPPEGNED 109 (124)
Q Consensus 83 ~il~~i~~~l~~P~~~~~~~~~~~~~~ 109 (124)
+||++|+++|.+|+++++..++++..|
T Consensus 101 ~VllsI~sLL~~PnpddPL~~~ia~~~ 127 (148)
T KOG0417|consen 101 KVLLSICSLLSDPNPDDPLVPDIAELY 127 (148)
T ss_pred HHHHHHHHHhcCCCCCccccHHHHHHH
Confidence 999999999999999999999999988
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-41 Score=237.65 Aligned_cols=104 Identities=35% Similarity=0.586 Sum_probs=99.0
Q ss_pred CCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCHH
Q 033234 3 DADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTME 82 (124)
Q Consensus 3 ~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~ 82 (124)
+++|++ +|+++|.||++||||||+|++.|.||++||++||+|+|.++||||||| .+|+||+++| ++.|+|+++|+
T Consensus 31 ~d~~l~--~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~-~~G~vCLdIL--~~~WsP~~~l~ 105 (153)
T COG5078 31 DDDNLF--HWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD-PSGNVCLDIL--KDRWSPVYTLE 105 (153)
T ss_pred CCCcce--eEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC-CCCCChhHHH--hCCCCccccHH
Confidence 344777 999999999999999999999999999999999999999999999999 5999999999 49999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccCccccc
Q 033234 83 DILTQLKKEMMSPQNWKLAQPPEGNEDAR 111 (124)
Q Consensus 83 ~il~~i~~~l~~P~~~~~~~~~~~~~~~~ 111 (124)
+||.+|+++|.+||.++++|.+|+..|++
T Consensus 106 sILlsl~slL~~PN~~~Pln~daa~~~~~ 134 (153)
T COG5078 106 TILLSLQSLLLSPNPDSPLNTEAATLYRE 134 (153)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHh
Confidence 99999999999999999999999999855
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-38 Score=216.23 Aligned_cols=102 Identities=25% Similarity=0.522 Sum_probs=99.1
Q ss_pred CCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCHH
Q 033234 3 DADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTME 82 (124)
Q Consensus 3 ~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~ 82 (124)
-+||++ .|.+.|+||++|||+||+|++.|+|+++||.+||.|+|.+.+||||||+ +|.+|+++|. ..|+|+|++.
T Consensus 29 ~~~niM--~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya-~G~iClDiLq--NrWsp~Ydva 103 (152)
T KOG0419|consen 29 VENNIM--EWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYA-DGSICLDILQ--NRWSPTYDVA 103 (152)
T ss_pred Ccccee--eeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCC-CCcchHHHHh--cCCCCchhHH
Confidence 478999 9999999999999999999999999999999999999999999999998 8999999995 7999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccCccc
Q 033234 83 DILTQLKKEMMSPQNWKLAQPPEGNED 109 (124)
Q Consensus 83 ~il~~i~~~l~~P~~~~~~~~~~~~~~ 109 (124)
+||.+||++|++|++.+|+|.+|+..|
T Consensus 104 ~ILtsiQslL~dPn~~sPaN~eAA~Lf 130 (152)
T KOG0419|consen 104 SILTSIQSLLNDPNPNSPANSEAARLF 130 (152)
T ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence 999999999999999999999999888
No 4
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-38 Score=219.46 Aligned_cols=119 Identities=29% Similarity=0.472 Sum_probs=108.5
Q ss_pred CCCCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCC----------
Q 033234 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFP---------- 70 (124)
Q Consensus 1 ~~~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~---------- 70 (124)
|.|++|++ +|.+.|+||++|.||||.|+..+.||.+||.+||+++|.++|||||||. +|++|.++|.
T Consensus 29 lvd~~dif--~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~-~G~vCISILH~pgdD~~gyE 105 (171)
T KOG0425|consen 29 LVDDSDIF--EWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE-DGDVCISILHPPGDDPSGYE 105 (171)
T ss_pred cccCCcee--EEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC-CCCEEEEeecCCCCCcccCC
Confidence 56888999 9999999999999999999999999999999999999999999999997 9999999995
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCccCccc--cccccccceeeee
Q 033234 71 -MLANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEGNED--ARMDHKGLVLKCC 122 (124)
Q Consensus 71 -~~~~W~p~~~l~~il~~i~~~l~~P~~~~~~~~~~~~~~--~~~~~~~~~~~c~ 122 (124)
..+.|+|..|+++||++|.++|++||.++|+|-+|+.+| .+-..|..+.||+
T Consensus 106 ~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~v 160 (171)
T KOG0425|consen 106 LPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCV 160 (171)
T ss_pred ChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHH
Confidence 136899999999999999999999999999999999988 3445566666665
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=7.6e-37 Score=216.88 Aligned_cols=103 Identities=22% Similarity=0.418 Sum_probs=98.6
Q ss_pred CCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCHH
Q 033234 3 DADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTME 82 (124)
Q Consensus 3 ~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~ 82 (124)
.++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+. +|.||+++| .+.|+|++|+.
T Consensus 27 ~~~d~~--~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~-~G~iCl~iL--~~~W~p~~ti~ 101 (152)
T PTZ00390 27 DPGNYR--HFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK-LGRICLDIL--KDKWSPALQIR 101 (152)
T ss_pred CCCCcc--EEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC-CCeEECccC--cccCCCCCcHH
Confidence 467887 9999999999999999999999999999999999999999999999996 999999999 48999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccCcccc
Q 033234 83 DILTQLKKEMMSPQNWKLAQPPEGNEDA 110 (124)
Q Consensus 83 ~il~~i~~~l~~P~~~~~~~~~~~~~~~ 110 (124)
+||++|+++|.+|+++++.+.+++..|.
T Consensus 102 ~iL~~i~~ll~~P~~~~pln~~aa~~~~ 129 (152)
T PTZ00390 102 TVLLSIQALLSAPEPDDPLDTSVADHFK 129 (152)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 9999999999999999999999999983
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.2e-36 Score=214.88 Aligned_cols=102 Identities=24% Similarity=0.511 Sum_probs=98.1
Q ss_pred CCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCHH
Q 033234 3 DADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTME 82 (124)
Q Consensus 3 ~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~ 82 (124)
+++|++ +|+++|.||++|||+||.|++.|.||++||++||+|+|.|+|+||||+. +|.||+++|. ++|+|+++++
T Consensus 26 ~~~nl~--~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~-~G~iCl~il~--~~W~p~~ti~ 100 (147)
T PLN00172 26 SDENLF--RWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS-NGSICLDILR--DQWSPALTVS 100 (147)
T ss_pred CCCChh--eEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC-CCEEEcccCc--CCCCCcCcHH
Confidence 457777 9999999999999999999999999999999999999999999999997 9999999994 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccCccc
Q 033234 83 DILTQLKKEMMSPQNWKLAQPPEGNED 109 (124)
Q Consensus 83 ~il~~i~~~l~~P~~~~~~~~~~~~~~ 109 (124)
+||.+|+++|.+|+.+++.|.++++.|
T Consensus 101 ~il~~i~~ll~~P~~~~p~n~~aa~~~ 127 (147)
T PLN00172 101 KVLLSISSLLTDPNPDDPLVPEIARVF 127 (147)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 999999999999999999999999988
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-36 Score=206.75 Aligned_cols=103 Identities=24% Similarity=0.406 Sum_probs=98.0
Q ss_pred CCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCHHH
Q 033234 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMED 83 (124)
Q Consensus 4 ~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~~ 83 (124)
..|++ .|+|.|.|++||+||||.|.+++.||++||.+||+++|.+++||||||+ +|.|||++|+....|+|+.||.+
T Consensus 35 ~~nl~--~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVyp-sgtVcLsiL~e~~~W~paitikq 111 (158)
T KOG0424|consen 35 TLNLM--NWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYP-SGTVCLSILNEEKDWRPAITIKQ 111 (158)
T ss_pred cceeE--EEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCC-CCcEehhhhccccCCCchhhHHH
Confidence 55777 9999999999999999999999999999999999999999999999999 99999999974445999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCccCccc
Q 033234 84 ILTQLKKEMMSPQNWKLAQPPEGNED 109 (124)
Q Consensus 84 il~~i~~~l~~P~~~~~~~~~~~~~~ 109 (124)
||.+||.||.+||..+++|.+|...|
T Consensus 112 iL~gIqdLL~~Pn~~~pAq~eA~~~~ 137 (158)
T KOG0424|consen 112 ILLGIQDLLDTPNITSPAQTEAYTIY 137 (158)
T ss_pred HHHHHHHHhcCCCCCCchhhHHHHHH
Confidence 99999999999999999999998888
No 8
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-35 Score=202.38 Aligned_cols=105 Identities=28% Similarity=0.513 Sum_probs=100.7
Q ss_pred CCCCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCC
Q 033234 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYT 80 (124)
Q Consensus 1 ~~~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~ 80 (124)
++++||++ .|.++|.||++|+|||-.|++.+.||.+||++||.|+|.|+.||||||. .|.||+++| ++.|+..|+
T Consensus 52 FP~~dnlf--~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~-~GnIcLDIL--kdKWSa~Yd 126 (175)
T KOG0421|consen 52 FPESDNLF--KWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL-SGNICLDIL--KDKWSAVYD 126 (175)
T ss_pred CcCcCcee--EEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc-cccchHHHH--HHHHHHHHh
Confidence 57889999 9999999999999999999999999999999999999999999999997 999999999 599999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCccCcccc
Q 033234 81 MEDILTQLKKEMMSPQNWKLAQPPEGNEDA 110 (124)
Q Consensus 81 l~~il~~i~~~l~~P~~~~~~~~~~~~~~~ 110 (124)
+++||++||++|-+||+++|.|..|+..+.
T Consensus 127 VrTILLSiQSLLGEPNn~SPLNaqAAelW~ 156 (175)
T KOG0421|consen 127 VRTILLSIQSLLGEPNNSSPLNAQAAELWS 156 (175)
T ss_pred HHHHHHHHHHHhCCCCCCCcchhHHHHHhc
Confidence 999999999999999999999998887763
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-34 Score=207.76 Aligned_cols=101 Identities=24% Similarity=0.461 Sum_probs=94.7
Q ss_pred CCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033234 5 DDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDI 84 (124)
Q Consensus 5 dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~~i 84 (124)
+|+. +.++.|.||+|||||||+|.+.|.+|++||++||+|+|.|+||||||.+.+|.||+++| +++|++++||+++
T Consensus 33 ~~~~--~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDil--kd~Wa~slTlrtv 108 (200)
T KOG0418|consen 33 ENLK--EIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDIL--KDQWAASLTLRTV 108 (200)
T ss_pred CChh--hceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhh--hcccchhhhHHHH
Confidence 4666 89999999999999999999999999999999999999999999999999999999999 5999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCccCccc
Q 033234 85 LTQLKKEMMSPQNWKLAQPPEGNED 109 (124)
Q Consensus 85 l~~i~~~l~~P~~~~~~~~~~~~~~ 109 (124)
|++||++|..|++.++....-++.|
T Consensus 109 LislQalL~~pEp~dPqDavva~qy 133 (200)
T KOG0418|consen 109 LISLQALLCAPEPKDPQDAVVAEQY 133 (200)
T ss_pred HHHHHHHHcCCCCCChHHHHHHHHH
Confidence 9999999999999999776666655
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=9.3e-34 Score=197.79 Aligned_cols=101 Identities=30% Similarity=0.559 Sum_probs=91.2
Q ss_pred CCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033234 5 DDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDI 84 (124)
Q Consensus 5 dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~~i 84 (124)
+|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|+||||+ .+|.||+++|. .+.|+|++++.+|
T Consensus 25 ~~~~--~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G~icl~~l~-~~~W~p~~~i~~i 100 (140)
T PF00179_consen 25 DNLF--EWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENGRICLDILN-PESWSPSYTIESI 100 (140)
T ss_dssp TETT--EEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTSBBGHGGGT-TTTC-TTSHHHHH
T ss_pred CChh--eEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccccchhhhhh-cccCCcccccccH
Confidence 4777 999999999999999999999999999999999999999999999999 59999999995 4569999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCccCccc
Q 033234 85 LTQLKKEMMSPQNWKLAQPPEGNED 109 (124)
Q Consensus 85 l~~i~~~l~~P~~~~~~~~~~~~~~ 109 (124)
|.+|+++|.+|+.+++.|.+++..|
T Consensus 101 l~~i~~ll~~p~~~~~~n~~a~~~~ 125 (140)
T PF00179_consen 101 LLSIQSLLSEPNPEDPLNEEAAELY 125 (140)
T ss_dssp HHHHHHHHHSTCTTSTSSHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcchHHHHHHH
Confidence 9999999999999999999999887
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.97 E-value=2.4e-32 Score=190.95 Aligned_cols=104 Identities=31% Similarity=0.564 Sum_probs=97.2
Q ss_pred CCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCHH
Q 033234 3 DADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTME 82 (124)
Q Consensus 3 ~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~ 82 (124)
+++|+. +|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+. +|.||+++|. .+.|+|++++.
T Consensus 24 ~~~~~~--~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~-~G~icl~~l~-~~~W~p~~~l~ 99 (141)
T cd00195 24 VEENLL--EWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDE-NGKICLSILK-THGWSPAYTLR 99 (141)
T ss_pred CCCChh--EEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCC-CCCCchhhcC-CCCcCCcCcHH
Confidence 445777 9999999999999999999999999999999999999999999999994 9999999995 33499999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccCcccc
Q 033234 83 DILTQLKKEMMSPQNWKLAQPPEGNEDA 110 (124)
Q Consensus 83 ~il~~i~~~l~~P~~~~~~~~~~~~~~~ 110 (124)
+||++|+++|.+|+.++++|.+|+++|.
T Consensus 100 ~il~~i~~~l~~p~~~~~~n~~aa~~~~ 127 (141)
T cd00195 100 TVLLSLQSLLNEPNPSDPLNAEAAKLYK 127 (141)
T ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHH
Confidence 9999999999999999999999999884
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.97 E-value=1.2e-31 Score=188.15 Aligned_cols=102 Identities=30% Similarity=0.566 Sum_probs=97.1
Q ss_pred CCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033234 5 DDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDI 84 (124)
Q Consensus 5 dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~~i 84 (124)
+|+. +|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||++ +|.+|+++|. .++|+|++++.++
T Consensus 26 ~~~~--~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-~G~icl~~l~-~~~W~p~~~l~~i 101 (145)
T smart00212 26 DNLL--EWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-SGEICLDILK-QEKWSPATTLETV 101 (145)
T ss_pred CChh--eEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-CCCEehhhcC-CCCCCCCCcHHHH
Confidence 3777 9999999999999999999999999999999999999999999999997 9999999984 3799999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCccCcccc
Q 033234 85 LTQLKKEMMSPQNWKLAQPPEGNEDA 110 (124)
Q Consensus 85 l~~i~~~l~~P~~~~~~~~~~~~~~~ 110 (124)
|.+|+++|.+|+.++++|.+|+..|.
T Consensus 102 l~~i~~~l~~p~~~~~~n~eaa~~~~ 127 (145)
T smart00212 102 LLSIQSLLSEPNPDSPLNADAATLYK 127 (145)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHH
Confidence 99999999999999999999999883
No 13
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-31 Score=181.74 Aligned_cols=103 Identities=24% Similarity=0.447 Sum_probs=99.3
Q ss_pred CCCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCH
Q 033234 2 DDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTM 81 (124)
Q Consensus 2 ~~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l 81 (124)
.+++|++ .|++.|. |.+-||..|.|+++|.||.+|||+||+|+|.|+|||||||+ .|++|+.+++ .++|.|++++
T Consensus 27 ~~e~nll--~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe-~gqvClPiis-~EnWkP~T~t 101 (153)
T KOG0422|consen 27 VDEANLL--KWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE-KGQVCLPIIS-AENWKPATRT 101 (153)
T ss_pred cccccce--eEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC-CCceeeeeee-cccccCcccH
Confidence 4677888 9999999 89999999999999999999999999999999999999997 7999999997 8999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCccCccc
Q 033234 82 EDILTQLKKEMMSPQNWKLAQPPEGNED 109 (124)
Q Consensus 82 ~~il~~i~~~l~~P~~~~~~~~~~~~~~ 109 (124)
.+||+++.+++++|+++++.+.+.|.+|
T Consensus 102 eqVlqaLi~liN~P~pe~plr~dlA~ey 129 (153)
T KOG0422|consen 102 EQVLQALIALINDPEPEHPLRIDLAEEY 129 (153)
T ss_pred HHHHHHHHHHhcCCCccccchhhHHHHH
Confidence 9999999999999999999999999998
No 14
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.9e-31 Score=180.38 Aligned_cols=104 Identities=24% Similarity=0.414 Sum_probs=98.7
Q ss_pred CCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCC-----------
Q 033234 3 DADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPM----------- 71 (124)
Q Consensus 3 ~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~----------- 71 (124)
++||++ +|.+.|.||++|+|+||.|..++.||.+||.+||+++|...+|||||++ +|++|.++|-.
T Consensus 30 ~EdnfF--~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~-dG~VCISILHaPGDDP~~YEls 106 (165)
T KOG0426|consen 30 NEDNFF--EWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYELS 106 (165)
T ss_pred Ccccee--eeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccC-CCeEEEEEeeCCCCCCccchhh
Confidence 689999 9999999999999999999999999999999999999999999999998 99999999852
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCccCccc
Q 033234 72 LANWQREYTMEDILTQLKKEMMSPQNWKLAQPPEGNED 109 (124)
Q Consensus 72 ~~~W~p~~~l~~il~~i~~~l~~P~~~~~~~~~~~~~~ 109 (124)
.+.|+|..+++.||+++.++|.+||.++.+|..|...+
T Consensus 107 ~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mW 144 (165)
T KOG0426|consen 107 AERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMW 144 (165)
T ss_pred hhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHH
Confidence 37899999999999999999999999999998887766
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.7e-31 Score=186.91 Aligned_cols=98 Identities=17% Similarity=0.331 Sum_probs=94.3
Q ss_pred ceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCHHHHHHHH-
Q 033234 10 QSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQL- 88 (124)
Q Consensus 10 ~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~~il~~i- 88 (124)
++++|.+.||.+||||||+++++|.+|++||++.|+|.|.++|||||||..+|.||++++ ++.|+|.+.|..|+..+
T Consensus 30 ~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDVi--NQtWSp~yDL~NIfetfL 107 (189)
T KOG0416|consen 30 QEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVI--NQTWSPLYDLVNIFETFL 107 (189)
T ss_pred cEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHH--hhhhhHHHHHHHHHHHHh
Confidence 399999999999999999999999999999999999999999999999999999999999 59999999999999886
Q ss_pred HHHhcCCCCCCCCCCccCccc
Q 033234 89 KKEMMSPQNWKLAQPPEGNED 109 (124)
Q Consensus 89 ~~~l~~P~~~~~~~~~~~~~~ 109 (124)
-++|..||+.++.|.+||+.|
T Consensus 108 PQLL~YPNp~DPLN~eAAal~ 128 (189)
T KOG0416|consen 108 PQLLRYPNPSDPLNGEAAALY 128 (189)
T ss_pred HHHhcCCCCCCCcccHHHHHH
Confidence 489999999999999999998
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.9e-29 Score=177.34 Aligned_cols=102 Identities=19% Similarity=0.327 Sum_probs=96.3
Q ss_pred CCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCHHH
Q 033234 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMED 83 (124)
Q Consensus 4 ~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~~ 83 (124)
.+|++..+++++|. |+.+.|.||.|+|.+.+|+.||+.||+|+|.|+|||||||- .|.||+++| .++|+|+.+|.+
T Consensus 54 ~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~-~GnVCLnIL--RedW~P~lnL~s 129 (184)
T KOG0420|consen 54 PDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDL-DGNVCLNIL--REDWRPVLNLNS 129 (184)
T ss_pred CcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCC-cchHHHHHH--HhcCccccchHH
Confidence 56666446999999 99999999999999999999999999999999999999996 999999999 599999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCccCccc
Q 033234 84 ILTQLKKEMMSPQNWKLAQPPEGNED 109 (124)
Q Consensus 84 il~~i~~~l~~P~~~~~~~~~~~~~~ 109 (124)
|+.+++.+|.+|+++++.|-+||...
T Consensus 130 Ii~GL~~LF~epn~eDpLN~eAA~~l 155 (184)
T KOG0420|consen 130 IIYGLQFLFLEPNPEDPLNKEAAAVL 155 (184)
T ss_pred HHHHHHHHhccCCCcccccHHHHHHH
Confidence 99999999999999999999999877
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.5e-27 Score=165.73 Aligned_cols=103 Identities=20% Similarity=0.353 Sum_probs=97.3
Q ss_pred CCCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCH
Q 033234 2 DDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTM 81 (124)
Q Consensus 2 ~~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l 81 (124)
.+++|+. ..++.|.||.||||++|.|++.+.+..|||.+||+-.|+|+||||||-. +|.||.+.| +..|+|...+
T Consensus 34 ~NeeD~t--diqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa-NGEICVNtL--KkDW~p~LGi 108 (223)
T KOG0423|consen 34 VNEEDFT--DIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA-NGEICVNTL--KKDWNPSLGI 108 (223)
T ss_pred cChHHhH--HHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc-Cceehhhhh--hcccCcccch
Confidence 4677777 8999999999999999999999999999999999999999999999996 999999999 5999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCccCccc
Q 033234 82 EDILTQLKKEMMSPQNWKLAQPPEGNED 109 (124)
Q Consensus 82 ~~il~~i~~~l~~P~~~~~~~~~~~~~~ 109 (124)
+.||+.|+.+|-.|++++..|.+|+...
T Consensus 109 rHvLltikCLLI~PnPESALNEeAGkmL 136 (223)
T KOG0423|consen 109 RHVLLTIKCLLIEPNPESALNEEAGKML 136 (223)
T ss_pred hhHhhhhheeeecCChHHHHhHHHHHHH
Confidence 9999999999999999999998887654
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.3e-24 Score=148.63 Aligned_cols=102 Identities=17% Similarity=0.356 Sum_probs=92.9
Q ss_pred CCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeec-ccCCccCCCCeeeccCCCCCCCCCCCCCHH
Q 033234 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRI-NMTCVNQETGMVEPSLFPMLANWQREYTME 82 (124)
Q Consensus 4 ~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~ 82 (124)
.||+. +|.+-+.|.+||.|+|.+|++.+.||+.||+..|+|.|..++ .||+|++ +|.||+++|. +.|+|++++.
T Consensus 40 ~dnlq--qWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYS-NGHICL~iL~--d~WsPAmsv~ 114 (161)
T KOG0427|consen 40 TDNLQ--QWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYS-NGHICLDILY--DSWSPAMSVQ 114 (161)
T ss_pred ccchh--eeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceec-CCeEEEEeec--ccCCcchhhH
Confidence 46777 999999999999999999999999999999999999999887 7999997 9999999994 9999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccCcccccc
Q 033234 83 DILTQLKKEMMSPQNWKLAQPPEGNEDARM 112 (124)
Q Consensus 83 ~il~~i~~~l~~P~~~~~~~~~~~~~~~~~ 112 (124)
+|.++|.++|++ ......+.++..|.|.
T Consensus 115 SvClSIlSMLSS--s~eKqrP~Dn~~Yvk~ 142 (161)
T KOG0427|consen 115 SVCLSILSMLSS--SKEKQRPTDNDRYVKN 142 (161)
T ss_pred HHHHHHHHHHcc--CccccCCCccchhhhh
Confidence 999999999987 3445667888888665
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.1e-23 Score=150.15 Aligned_cols=112 Identities=21% Similarity=0.314 Sum_probs=89.7
Q ss_pred CCCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCC-CCCCCCCCCC
Q 033234 2 DDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFP-MLANWQREYT 80 (124)
Q Consensus 2 ~~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~-~~~~W~p~~~ 80 (124)
+.++||. +||.+|.||+||||+||.|+.+|.||.+||++||.|+.+|+- .-...+-++||++-+ ..+.|+|.|+
T Consensus 29 P~p~nIL--EWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN---GRFktntRLCLSiSDfHPdsWNP~Ws 103 (244)
T KOG0894|consen 29 PNPNNIL--EWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN---GRFKTNTRLCLSISDFHPDSWNPGWS 103 (244)
T ss_pred CCcccee--eeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC---CceecCceEEEeccccCcCcCCCccc
Confidence 5688999 999999999999999999999999999999999999999852 122235679999976 3589999999
Q ss_pred HHHHHHHHHHHhcC--CCCCCCCCCccCccccccccccce
Q 033234 81 MEDILTQLKKEMMS--PQNWKLAQPPEGNEDARMDHKGLV 118 (124)
Q Consensus 81 l~~il~~i~~~l~~--P~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
+.+||.+|.++|.+ |...++...+...+..+.+.+.++
T Consensus 104 VStILtGLlSFM~e~~pTtGSI~tS~~~kr~lA~~SlaFN 143 (244)
T KOG0894|consen 104 VSTILTGLLSFMTEDSPTTGSIETSDQDKRMLAKSSLAFN 143 (244)
T ss_pred HHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHhhhhhc
Confidence 99999999999975 555555555444444444555555
No 20
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.2e-19 Score=123.15 Aligned_cols=109 Identities=54% Similarity=0.978 Sum_probs=100.4
Q ss_pred CCCCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCC
Q 033234 1 MDDADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYT 80 (124)
Q Consensus 1 ~~~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~ 80 (124)
|+|.||+.++.|..+|.||+.|+||+.+|.++|....+||..||.|+|.+++--..|++.+|.+.-..+....+|...++
T Consensus 30 l~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~ 109 (138)
T KOG0896|consen 30 LEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYS 109 (138)
T ss_pred ccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccch
Confidence 57899999999999999999999999999999999999999999999999999999999898887766555689999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCccCccc
Q 033234 81 MEDILTQLKKEMMSPQNWKLAQPPEGNED 109 (124)
Q Consensus 81 l~~il~~i~~~l~~P~~~~~~~~~~~~~~ 109 (124)
++.+|.+++.+|....+.+.+|+.+++.|
T Consensus 110 ~~~vl~~lr~~m~~~eN~kl~qp~eg~~~ 138 (138)
T KOG0896|consen 110 IKMVLGQLRKEMMSKENRKLPQPPEGQCF 138 (138)
T ss_pred hhHHHHhhhHHHHHHHhhcccCCCCCCcC
Confidence 99999999999888888899999888754
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.7e-19 Score=133.07 Aligned_cols=111 Identities=25% Similarity=0.361 Sum_probs=85.0
Q ss_pred CCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCC-CCCCCCCCCCH
Q 033234 3 DADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFP-MLANWQREYTM 81 (124)
Q Consensus 3 ~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~-~~~~W~p~~~l 81 (124)
=+||++ +|+.+|.||.||-||||+|+.+|.||.+||++||.+..+|+-- -...+-.||+++-. ..+.|.|+|++
T Consensus 35 lEdNlF--EWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG---RFE~nkKiCLSISgyHPEtWqPSWSi 109 (314)
T KOG0428|consen 35 LEDNLF--EWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG---RFEVNKKICLSISGYHPETWQPSWSI 109 (314)
T ss_pred chhcee--eEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC---ceeeCceEEEEecCCCccccCcchhH
Confidence 478999 9999999999999999999999999999999999999888521 22225579999975 35899999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCccCccc-----cccccccceeeee
Q 033234 82 EDILTQLKKEMMSPQNWKLAQPPEGNED-----ARMDHKGLVLKCC 122 (124)
Q Consensus 82 ~~il~~i~~~l~~P~~~~~~~~~~~~~~-----~~~~~~~~~~~c~ 122 (124)
++.|.+|..+|-. ++...-..-.| ++++-|+--+.|.
T Consensus 110 RTALlAlIgFmPt----~p~GAlGSlDYpp~ERr~LAkkS~e~~ck 151 (314)
T KOG0428|consen 110 RTALLALIGFMPT----KPEGALGSLDYPPEERRALAKKSQEFCCK 151 (314)
T ss_pred HHHHHHHHccccC----CCCCccccCcCCHHHHHHHHHhhcccCcc
Confidence 9999999988832 33222222223 4556666555554
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.8e-16 Score=136.63 Aligned_cols=102 Identities=19% Similarity=0.290 Sum_probs=83.8
Q ss_pred CCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeec--ccCCccCCCCeeeccCCCC-----CCCCC
Q 033234 4 ADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRI--NMTCVNQETGMVEPSLFPM-----LANWQ 76 (124)
Q Consensus 4 ~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i--~Hpnv~~~~G~icl~~l~~-----~~~W~ 76 (124)
+|.++ ...+.|.||.||||.+|.|.|.+.||++||.+||.+...+.- ++||.|. .|++|+++|+. .+.|+
T Consensus 877 e~r~d--~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~-~g~vc~s~l~tw~g~~~e~w~ 953 (1101)
T KOG0895|consen 877 EDRMD--LLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE-DGKVCLSLLNTWHGRGNEVWN 953 (1101)
T ss_pred hHHHH--HHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc-ccceehhhhccccCCCccccC
Confidence 44555 567889999999999999999999999999999999998754 8999996 99999999972 47899
Q ss_pred CCCCHHHHHHHHHHHh-------cCCCCCCCCCCccCcc
Q 033234 77 REYTMEDILTQLKKEM-------MSPQNWKLAQPPEGNE 108 (124)
Q Consensus 77 p~~~l~~il~~i~~~l-------~~P~~~~~~~~~~~~~ 108 (124)
|+.++.+||.+||.++ ++|..++......+..
T Consensus 954 ~~s~~lq~l~s~q~l~l~~~py~ne~gy~~~~g~~~g~~ 992 (1101)
T KOG0895|consen 954 PSSSILQVLVSIQGLVLNEEPYFNEAGYEKQRGTAEGEK 992 (1101)
T ss_pred cchhHHHHHHHhhhhhcccccccCccccccccccccccc
Confidence 9999999999999985 3455554444443333
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=9.3e-15 Score=107.95 Aligned_cols=99 Identities=15% Similarity=0.337 Sum_probs=86.5
Q ss_pred CCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCC--CCCCCceeeeecccCCccCCCCeeeccCCCCCCCCC-CCCCHH
Q 033234 6 DILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYP--DNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQ-REYTME 82 (124)
Q Consensus 6 d~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP--~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~-p~~~l~ 82 (124)
|-. .|-++|++ ..+.|.||+|+|+|.+|++|| ..-|+|.|.+.++||+|.+.++.+|++-. ..+|. -...+.
T Consensus 47 n~l--~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~ra--f~eWRk~ehhiw 121 (258)
T KOG0429|consen 47 NKL--LWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRA--FPEWRKEEHHIW 121 (258)
T ss_pred ccc--eEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhh--hhhhhccccHHH
Confidence 445 89999996 556899999999999999999 46799999999999999999999999875 46796 466799
Q ss_pred HHHHHHHHHhcCCCCCCC--CCCccCccc
Q 033234 83 DILTQLKKEMMSPQNWKL--AQPPEGNED 109 (124)
Q Consensus 83 ~il~~i~~~l~~P~~~~~--~~~~~~~~~ 109 (124)
.||..+|..+++|+-+.. .|++|+..|
T Consensus 122 qvL~ylqriF~dpd~si~kl~N~eAa~l~ 150 (258)
T KOG0429|consen 122 QVLVYLQRIFYDPDVSIDKLINPEAAVLY 150 (258)
T ss_pred HHHHHHHHHhcCcccchhhhcChHHHHHH
Confidence 999999999999977654 588888888
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.7e-12 Score=111.31 Aligned_cols=89 Identities=20% Similarity=0.341 Sum_probs=80.1
Q ss_pred CCCCCccceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeee---cccCCccCCCCeeeccCCC-----CCCC
Q 033234 3 DADDILMQSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTR---INMTCVNQETGMVEPSLFP-----MLAN 74 (124)
Q Consensus 3 ~~dd~~l~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~---i~Hpnv~~~~G~icl~~l~-----~~~~ 74 (124)
++..++ ..++.|.||.||||++|+|.|.|.||..||..||.+++++. -+.||.|. +|+||+++|. ..+.
T Consensus 307 ~e~RMd--~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn-~GKVcLslLgTwtg~~~e~ 383 (1101)
T KOG0895|consen 307 DEGRMD--LIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYN-DGKVCLSLLGTWTGSRREK 383 (1101)
T ss_pred cccccc--eeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCccc-CceEEeeeeeecccccccC
Confidence 456666 89999999999999999999999999999999999999987 38999996 9999999986 2378
Q ss_pred CCCC-CCHHHHHHHHHHHhcC
Q 033234 75 WQRE-YTMEDILTQLKKEMMS 94 (124)
Q Consensus 75 W~p~-~~l~~il~~i~~~l~~ 94 (124)
|++. .+|.++|.+||.++.+
T Consensus 384 wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 384 WTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred CCccccchhhhhhhhhhhhcc
Confidence 9998 8899999999999865
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6.4e-09 Score=69.91 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=55.8
Q ss_pred EEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCC
Q 033234 29 YQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSP 95 (124)
Q Consensus 29 f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p~~~l~~il~~i~~~l~~P 95 (124)
.-+.+.|+++||+.||.++-..++..-..--++|+||+.+|. .+.|+.+++++.++++|.+++.+-
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt-~qgwssay~Ve~vi~qiaatlVkG 78 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT-KQGWSSAYEVERVIMQIAATLVKG 78 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc-cccccchhhHHHHHHHHHHHhhcc
Confidence 345678999999999999988776555544458999999998 999999999999999999988753
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.37 E-value=6.8e-07 Score=61.95 Aligned_cols=67 Identities=24% Similarity=0.394 Sum_probs=59.4
Q ss_pred CCCEEEEEEEeCCCCCCCCCCceeeeec---ccCCccCCCCeeec---cCCCCCCCCCCCCCHHHHHHHHHHHhcC
Q 033234 25 EGRIYQLKLFCGTDYPDNPPSVRFQTRI---NMTCVNQETGMVEP---SLFPMLANWQREYTMEDILTQLKKEMMS 94 (124)
Q Consensus 25 egg~f~~~i~fp~~yP~~pP~v~f~t~i---~Hpnv~~~~G~icl---~~l~~~~~W~p~~~l~~il~~i~~~l~~ 94 (124)
.|+.+.+.|.+|+.||..||.|....+. +-|||+. +|.+|+ ... .+.|.|.-.+.++|.+.+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~--~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELV--LDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcc--cCccCHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999888544 6899998 999999 554 58999999999999999998874
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.26 E-value=8.1e-07 Score=60.85 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=53.9
Q ss_pred eEEEEEECCCCCCCCCCEEE--EEEEeCCCCCCCCCCceeeeec-----ccCCccCCCCeeeccCCCCCCCCCC-CCCHH
Q 033234 11 SWTGTIIGPPNTVHEGRIYQ--LKLFCGTDYPDNPPSVRFQTRI-----NMTCVNQETGMVEPSLFPMLANWQR-EYTME 82 (124)
Q Consensus 11 ~W~~~i~Gp~~tpyegg~f~--~~i~fp~~yP~~pP~v~f~t~i-----~Hpnv~~~~G~icl~~l~~~~~W~p-~~~l~ 82 (124)
...++|. -.|.|..|. +.|-+|.+||.+||.+...... -+.+||+ +|+|.+..| ++|++ ..+|.
T Consensus 34 ~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~-~G~v~~pyL---~~W~~~~s~L~ 105 (121)
T PF05743_consen 34 CLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDS-NGRVYLPYL---QNWNPPSSNLV 105 (121)
T ss_dssp EEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-T-TSBB-SHHH---HT--TTTS-HH
T ss_pred EEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECC-CCCEeCchh---ccCCCCCCCHH
Confidence 5555555 258888886 5567999999999999776432 2559997 999999987 79987 88999
Q ss_pred HHHHHHHHHhcC
Q 033234 83 DILTQLKKEMMS 94 (124)
Q Consensus 83 ~il~~i~~~l~~ 94 (124)
+++..+++.|++
T Consensus 106 ~lv~~l~~~F~~ 117 (121)
T PF05743_consen 106 DLVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHHCCCH
T ss_pred HHHHHHHHHHhH
Confidence 999999988764
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.00069 Score=53.59 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=57.5
Q ss_pred CCCCCCCEEEEEE--EeCCCCCCCCCCceeeee-----cccCCccCCCCeeeccCCCCCCCCC-CCCCHHHHHHHHHHHh
Q 033234 21 NTVHEGRIYQLKL--FCGTDYPDNPPSVRFQTR-----INMTCVNQETGMVEPSLFPMLANWQ-REYTMEDILTQLKKEM 92 (124)
Q Consensus 21 ~tpyegg~f~~~i--~fp~~yP~~pP~v~f~t~-----i~Hpnv~~~~G~icl~~l~~~~~W~-p~~~l~~il~~i~~~l 92 (124)
-.+|.|..|.+-| -+.+.||..||.+.-... -.|-+||+ +|.|.|..| .+|. |+++|..+++-+.+.|
T Consensus 60 p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~-nG~V~LPYL---h~W~~pssdLv~Liq~l~a~f 135 (365)
T KOG2391|consen 60 PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP-NGKVYLPYL---HNWDPPSSDLVGLIQELIAAF 135 (365)
T ss_pred cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC-CCeEechhh---ccCCCccchHHHHHHHHHHHh
Confidence 3578898887654 489999999999866532 14999998 999999998 7997 5788999999998888
Q ss_pred cCC
Q 033234 93 MSP 95 (124)
Q Consensus 93 ~~P 95 (124)
.++
T Consensus 136 ~~~ 138 (365)
T KOG2391|consen 136 SED 138 (365)
T ss_pred cCC
Confidence 753
No 29
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.72 E-value=0.019 Score=41.22 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=49.1
Q ss_pred EEEEeCCCCCCCCCCceeeeecc---cCCccCCC-----CeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcC
Q 033234 31 LKLFCGTDYPDNPPSVRFQTRIN---MTCVNQET-----GMVEPSLFPMLANWQREYTMEDILTQLKKEMMS 94 (124)
Q Consensus 31 ~~i~fp~~yP~~pP~v~f~t~i~---Hpnv~~~~-----G~icl~~l~~~~~W~p~~~l~~il~~i~~~l~~ 94 (124)
+.|.|+.+||..+|.|.+..+.| +||+++ . ..+|+-.-+ ..+|.++.++..+|..|..-|.+
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~-~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGP-WSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCC-HHHhhhccCHHHHHHHHHHHHHH
Confidence 56899999999999887776543 577765 4 578876654 57889999999999999988753
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.49 E-value=0.1 Score=33.85 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=26.6
Q ss_pred eEEEEEEC--CCCCCCCCCEEEEEEEeCCCCCCCCCCceeeee
Q 033234 11 SWTGTIIG--PPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTR 51 (124)
Q Consensus 11 ~W~~~i~G--p~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~ 51 (124)
.+.+.+.+ ...+.-....+.+.+.||++||..+|.|.....
T Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 31 SLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp EEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred ceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 45666621 234444567899999999999999999987665
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=93.58 E-value=1 Score=30.98 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=47.8
Q ss_pred EEC--CCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCC-Cee--eccCCC------------CCCCCCCC
Q 033234 16 IIG--PPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQET-GMV--EPSLFP------------MLANWQRE 78 (124)
Q Consensus 16 i~G--p~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~-G~i--cl~~l~------------~~~~W~p~ 78 (124)
|.| -+.+.|....-.+.|.+|..||..+|...+..+ -+-..+ |.+ |.+... ....|.|.
T Consensus 29 i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P----~L~~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~ 104 (122)
T PF14462_consen 29 IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP----PLKLADGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPG 104 (122)
T ss_pred EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC----ceEccCCCcCCchhcchhhcCCeeeeeecCCCCCCCCC
Confidence 444 455669999999999999999999987766543 222222 333 333221 12567775
Q ss_pred C-CHHHHHHHHHHHhc
Q 033234 79 Y-TMEDILTQLKKEMM 93 (124)
Q Consensus 79 ~-~l~~il~~i~~~l~ 93 (124)
. +|.+.|..|...|.
T Consensus 105 ~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 105 VDDLWTHLARVEHALA 120 (122)
T ss_pred CCcHHHHHHHHHHHHh
Confidence 4 48888888876653
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.51 E-value=0.29 Score=31.51 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=21.9
Q ss_pred CCCEEEEEEEeCCCCCCCCCCceeee
Q 033234 25 EGRIYQLKLFCGTDYPDNPPSVRFQT 50 (124)
Q Consensus 25 egg~f~~~i~fp~~yP~~pP~v~f~t 50 (124)
..-.+.+.+.+|.+||..+|.|.+..
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEEC
Confidence 34568899999999999999988764
No 33
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=93.06 E-value=0.14 Score=36.19 Aligned_cols=73 Identities=14% Similarity=0.228 Sum_probs=34.0
Q ss_pred eEEEEEECCCCCCCCCC----------EEEEEEEeCCCCCCCCCCceeeeec-ccCCccCCCCeeeccCCCCCCCC---C
Q 033234 11 SWTGTIIGPPNTVHEGR----------IYQLKLFCGTDYPDNPPSVRFQTRI-NMTCVNQETGMVEPSLFPMLANW---Q 76 (124)
Q Consensus 11 ~W~~~i~Gp~~tpyegg----------~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~~G~icl~~l~~~~~W---~ 76 (124)
.|--.=.-+.||-|.|. .|.+++++|..||..||.|..-.-- --.-.+. .|+||++.-- ..-| .
T Consensus 49 dWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYR-GGkIClt~HF-kPLWakN~ 126 (161)
T PF08694_consen 49 DWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKTAKMYR-GGKICLTDHF-KPLWAKNV 126 (161)
T ss_dssp --EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-SSBCC-CCBB---TTH-HHHHHCTT
T ss_pred CeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCchhhhhc-CceEeeeccc-chhhhhcC
Confidence 34333345778877774 3557788999999999999763211 0112343 8999998632 3446 3
Q ss_pred CCCCHHHHH
Q 033234 77 REYTMEDIL 85 (124)
Q Consensus 77 p~~~l~~il 85 (124)
|.+.+...+
T Consensus 127 PkfGIaHal 135 (161)
T PF08694_consen 127 PKFGIAHAL 135 (161)
T ss_dssp TT--HHHHH
T ss_pred CchhHHHHH
Confidence 566666654
No 34
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.56 E-value=13 Score=25.95 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=44.3
Q ss_pred eEEEEEECCCCCCCCCC----------EEEEEEEeCCCCCCCCCCceeeeecc-cCCccCCCCeeeccCCCCCCCCCC--
Q 033234 11 SWTGTIIGPPNTVHEGR----------IYQLKLFCGTDYPDNPPSVRFQTRIN-MTCVNQETGMVEPSLFPMLANWQR-- 77 (124)
Q Consensus 11 ~W~~~i~Gp~~tpyegg----------~f~~~i~fp~~yP~~pP~v~f~t~i~-Hpnv~~~~G~icl~~l~~~~~W~p-- 77 (124)
.|.-.=.-++||-|-|. .|.+++.+|-.||..+|.+..-.--- ---.+ ..|.||+..-- +.-|..
T Consensus 52 dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmy-rggkiclt~hf-kplwarn~ 129 (167)
T KOG3357|consen 52 DWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMY-RGGKICLTDHF-KPLWARNV 129 (167)
T ss_pred cceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhh-cCceEeecccc-chhhhhcC
Confidence 45444456888988884 35677788999999999886421100 00123 28999987532 456753
Q ss_pred -CCCHHHH
Q 033234 78 -EYTMEDI 84 (124)
Q Consensus 78 -~~~l~~i 84 (124)
.+.+...
T Consensus 130 pkfgiaha 137 (167)
T KOG3357|consen 130 PKFGIAHA 137 (167)
T ss_pred cchhHHHH
Confidence 4444443
No 35
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=64.05 E-value=66 Score=25.84 Aligned_cols=59 Identities=17% Similarity=0.383 Sum_probs=40.8
Q ss_pred CCCCCEEEEEEEeCCCCCCCCCCceeee-ecccCCccCCCCeeeccCCCCCCCCCCCC--CHHHHHHHHHH
Q 033234 23 VHEGRIYQLKLFCGTDYPDNPPSVRFQT-RINMTCVNQETGMVEPSLFPMLANWQREY--TMEDILTQLKK 90 (124)
Q Consensus 23 pyegg~f~~~i~fp~~yP~~pP~v~f~t-~i~Hpnv~~~~G~icl~~l~~~~~W~p~~--~l~~il~~i~~ 90 (124)
||.|...+-+|.|...+|..||.+.|.. .-|+|-. ..+ .. ..+|.+.- .+..++..+..
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~----s~l--~~---L~~Wd~~dp~~Ll~li~EL~~ 122 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDP----SKL--PS---LVNWDPSDPNCLLNLISELRQ 122 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCCh----hhc--ch---hhcCCCCCchHHHHHHHHHHH
Confidence 4889999999999999999999999973 2367732 111 22 36897654 35555555443
No 36
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=61.43 E-value=9.6 Score=27.89 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=23.6
Q ss_pred CCCEEEEEEEeCCCCCCCCCCceeee
Q 033234 25 EGRIYQLKLFCGTDYPDNPPSVRFQT 50 (124)
Q Consensus 25 egg~f~~~i~fp~~yP~~pP~v~f~t 50 (124)
+.|.|.|.-.+|--||..+|.|+|+-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35999999999999999999999984
No 37
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=61.39 E-value=9.9 Score=26.45 Aligned_cols=25 Identities=24% Similarity=0.630 Sum_probs=22.9
Q ss_pred CCEEEEEEEeCCCCC-CCCCCceeee
Q 033234 26 GRIYQLKLFCGTDYP-DNPPSVRFQT 50 (124)
Q Consensus 26 gg~f~~~i~fp~~yP-~~pP~v~f~t 50 (124)
.|.|.|.-.+|-.|| ..||.|+|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 499999999999999 9999999974
No 38
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=54.10 E-value=29 Score=31.14 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=28.2
Q ss_pred ceEEEEEECCCCCCCCCCE-EEEEEEeCCCCCC-CCCCceeeee
Q 033234 10 QSWTGTIIGPPNTVHEGRI-YQLKLFCGTDYPD-NPPSVRFQTR 51 (124)
Q Consensus 10 ~~W~~~i~Gp~~tpyegg~-f~~~i~fp~~yP~-~pP~v~f~t~ 51 (124)
+.-.+.+.||-..- .|-+ .++.|.||.+||. .+|+++|..+
T Consensus 449 Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 449 RSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred ceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 35567777655433 4433 3788999999997 4689888753
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=53.06 E-value=16 Score=29.28 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=22.0
Q ss_pred CEEEEEEEeCCCCCCCCCCceeeeeccc
Q 033234 27 RIYQLKLFCGTDYPDNPPSVRFQTRINM 54 (124)
Q Consensus 27 g~f~~~i~fp~~yP~~pP~v~f~t~i~H 54 (124)
-.|-+.|.+|..||...|.++|.+ +||
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 346677889999999999999986 355
No 40
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=51.86 E-value=18 Score=25.75 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCEEEEEEEeCCCCC-----CCCCCceeeeecccCCc
Q 033234 26 GRIYQLKLFCGTDYP-----DNPPSVRFQTRINMTCV 57 (124)
Q Consensus 26 gg~f~~~i~fp~~yP-----~~pP~v~f~t~i~Hpnv 57 (124)
.|.|.|+-.+|--|| ..||.|+|.- +++..
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V--~~~g~ 106 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV--FARGL 106 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE--ECCCc
Confidence 489999999999999 8999999974 34443
No 41
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=51.59 E-value=14 Score=27.79 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=18.5
Q ss_pred EEEEEEEeCCCCCCCCCCce
Q 033234 28 IYQLKLFCGTDYPDNPPSVR 47 (124)
Q Consensus 28 ~f~~~i~fp~~yP~~pP~v~ 47 (124)
.+.+.+.++.+||..+|-+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 78899999999999999993
No 42
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=51.41 E-value=40 Score=21.35 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=24.1
Q ss_pred ceEEEEEECCCCCCCCCCEEEEEEEeCCCCCC
Q 033234 10 QSWTGTIIGPPNTVHEGRIYQLKLFCGTDYPD 41 (124)
Q Consensus 10 ~~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~ 41 (124)
++|.+-+.|+.+.-...-+=++...+.+.|+.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~ 33 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN 33 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC
Confidence 68999999988875556677788888888875
No 43
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=49.27 E-value=6.6 Score=30.74 Aligned_cols=59 Identities=20% Similarity=0.429 Sum_probs=38.4
Q ss_pred eEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCCceeeeecccCCccCCCCeeeccCCCCCCCCCC-CCCHHHHHHHHH
Q 033234 11 SWTGTIIGPPNTVHEGRIYQLKLFCGTDYPDNPPSVRFQTRINMTCVNQETGMVEPSLFPMLANWQR-EYTMEDILTQLK 89 (124)
Q Consensus 11 ~W~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~~~~~W~p-~~~l~~il~~i~ 89 (124)
..++.+.. +.....++|.++.+||.++|.+..- .|... ...|.+ ..++.+++.+++
T Consensus 127 ~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~--------------~P~~~---~~~w~~~~ssL~~v~~qF~ 183 (291)
T PF09765_consen 127 TIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLD--------------LPIPF---SLSWSPSQSSLKDVVQQFQ 183 (291)
T ss_dssp EEEEEEET------TCEEEEEEEETTTTTTTSEEEECS---------------TTS-H---HHHHHCHT-SHHHHHHHHH
T ss_pred EEEEEEEc------CCceEEEEEEECCCCCCCCceeeCC--------------CCcch---hhhhcccccCHHHHHHHHH
Confidence 55666652 1256778999999999999964321 11111 247888 788999988877
Q ss_pred HHh
Q 033234 90 KEM 92 (124)
Q Consensus 90 ~~l 92 (124)
..+
T Consensus 184 ~~l 186 (291)
T PF09765_consen 184 EAL 186 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 44
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=40.24 E-value=32 Score=25.28 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCEEEEEEEeCCCCCC-----CCCCceeee
Q 033234 26 GRIYQLKLFCGTDYPD-----NPPSVRFQT 50 (124)
Q Consensus 26 gg~f~~~i~fp~~yP~-----~pP~v~f~t 50 (124)
.|.|.|+-..|-.||. .||.|+|.-
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 4889999999999998 899988873
No 45
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=38.37 E-value=37 Score=24.80 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=23.1
Q ss_pred CCEEEEEEEeCCCCCC-----CCCCceeeeecccCC
Q 033234 26 GRIYQLKLFCGTDYPD-----NPPSVRFQTRINMTC 56 (124)
Q Consensus 26 gg~f~~~i~fp~~yP~-----~pP~v~f~t~i~Hpn 56 (124)
.|.|.|.-.+|--||. .||.|+|. +++|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~--V~~~g 125 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW--VFARG 125 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE--EECCC
Confidence 4889999999999995 88988887 34444
No 46
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=37.31 E-value=38 Score=23.59 Aligned_cols=29 Identities=21% Similarity=0.380 Sum_probs=19.0
Q ss_pred CCCccceEEEEEECCCCCCCC-CCEEEEEEEe
Q 033234 5 DDILMQSWTGTIIGPPNTVHE-GRIYQLKLFC 35 (124)
Q Consensus 5 dd~~l~~W~~~i~Gp~~tpye-gg~f~~~i~f 35 (124)
.|.. .|.|++.|++||+.. ..+|-+.+.|
T Consensus 45 Gd~~--~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 45 GDPE--WYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCc--ceEEEEECCCCcceeccccchheeeH
Confidence 3444 788999999988774 4454444443
No 47
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.17 E-value=11 Score=27.82 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=30.1
Q ss_pred CCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCC
Q 033234 61 TGMVEPSLFPMLANWQREYTMEDILTQLKKEMMSPQNWKLAQ 102 (124)
Q Consensus 61 ~G~icl~~l~~~~~W~p~~~l~~il~~i~~~l~~P~~~~~~~ 102 (124)
.+.+|+++|+ +.|+|.+|.++.+.-++.++.+-...-+.|
T Consensus 135 ~~~f~~sIlD--r~Y~pdmt~eea~~lmkKCv~El~kRlvin 174 (200)
T KOG0177|consen 135 GSYFCLSILD--RYYKPDMTIEEALDLMKKCVLELKKRLVIN 174 (200)
T ss_pred hhhhhHHHHH--hhhCCCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 5679999995 999999999998888877765433333333
No 48
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=31.98 E-value=74 Score=25.49 Aligned_cols=39 Identities=15% Similarity=0.377 Sum_probs=29.4
Q ss_pred eEEEEEECCCCC-CCCCCEEEEEEE---eCCCCCCCCCCceeee
Q 033234 11 SWTGTIIGPPNT-VHEGRIYQLKLF---CGTDYPDNPPSVRFQT 50 (124)
Q Consensus 11 ~W~~~i~Gp~~t-pyegg~f~~~i~---fp~~yP~~pP~v~f~t 50 (124)
+|+..|.|-+++ -|++|.+++++. |-.-+- +.|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~q-R~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQ-RGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccccc-cCCceEeeE
Confidence 689999996665 888999999887 434444 566999953
No 49
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=29.46 E-value=61 Score=25.41 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.8
Q ss_pred CCEEEEEEEeCCCCC------------------CCCCCceeee
Q 033234 26 GRIYQLKLFCGTDYP------------------DNPPSVRFQT 50 (124)
Q Consensus 26 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 50 (124)
.|.|.|.-.+|.-|| ..||.|+|+-
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 589999999999997 6889999874
No 50
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=26.16 E-value=74 Score=24.81 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.9
Q ss_pred CCEEEEEEEeCCCCC------------------CCCCCceeee
Q 033234 26 GRIYQLKLFCGTDYP------------------DNPPSVRFQT 50 (124)
Q Consensus 26 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 50 (124)
.|.|.|.-..|.-|| ..||.|+|.-
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 214 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFMV 214 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEEE
Confidence 589999999999998 5899999874
No 51
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=24.29 E-value=85 Score=24.56 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=21.5
Q ss_pred CCEEEEEEEeCCCCC------------------CCCCCceeee
Q 033234 26 GRIYQLKLFCGTDYP------------------DNPPSVRFQT 50 (124)
Q Consensus 26 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 50 (124)
.|.|.|.-..|.-|| ..||.|+|.-
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 218 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFFV 218 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEEE
Confidence 599999999999996 6789998874
No 52
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=24.17 E-value=76 Score=27.43 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=24.7
Q ss_pred CCCCCCEEEEEEEeCCCCCC---CCCCceeeeec
Q 033234 22 TVHEGRIYQLKLFCGTDYPD---NPPSVRFQTRI 52 (124)
Q Consensus 22 tpyegg~f~~~i~fp~~yP~---~pP~v~f~t~i 52 (124)
+||.=|.|-+ +.+|++||+ +-|.++|.|+-
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~TpT 280 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPT 280 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecch
Confidence 5788888887 458999995 77999999873
No 53
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=24.01 E-value=83 Score=24.61 Aligned_cols=25 Identities=8% Similarity=0.242 Sum_probs=21.2
Q ss_pred CCEEEEEEEeCCCCC------------------CCCCCceeee
Q 033234 26 GRIYQLKLFCGTDYP------------------DNPPSVRFQT 50 (124)
Q Consensus 26 gg~f~~~i~fp~~yP------------------~~pP~v~f~t 50 (124)
.|.|.|.-.+|..|| ..||.|+|.-
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~V 226 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLKV 226 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEEE
Confidence 589999999998887 6889998873
No 54
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=23.71 E-value=52 Score=26.28 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=19.1
Q ss_pred CCCCCCCCCceeeeecccCCccC
Q 033234 37 TDYPDNPPSVRFQTRINMTCVNQ 59 (124)
Q Consensus 37 ~~yP~~pP~v~f~t~i~Hpnv~~ 59 (124)
+.-+...|+|.|.-.+|||||-+
T Consensus 303 dgs~eds~rvV~~V~lwhpevq~ 325 (334)
T KOG3696|consen 303 DGSSEDSPRVVFTVDLWHPEVQP 325 (334)
T ss_pred CCCcccCceEEEEEeccCccccc
Confidence 34456789999999999999976
No 55
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=22.90 E-value=83 Score=25.20 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=20.9
Q ss_pred CEEEEEEEeCCCCCCCCCCceeeee
Q 033234 27 RIYQLKLFCGTDYPDNPPSVRFQTR 51 (124)
Q Consensus 27 g~f~~~i~fp~~yP~~pP~v~f~t~ 51 (124)
-.+.+.+..+..||...|.|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4567888999999999999987654
No 56
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=22.41 E-value=97 Score=23.32 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=21.0
Q ss_pred CCEEEEEEEeCCCCCC-------CCCCceee
Q 033234 26 GRIYQLKLFCGTDYPD-------NPPSVRFQ 49 (124)
Q Consensus 26 gg~f~~~i~fp~~yP~-------~pP~v~f~ 49 (124)
.|.|.|.-..|--||. .||.|+|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5999999999999964 89999986
No 57
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=21.76 E-value=1e+02 Score=23.19 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=21.2
Q ss_pred CCEEEEEEEeCCCCCC-------CCCCceee
Q 033234 26 GRIYQLKLFCGTDYPD-------NPPSVRFQ 49 (124)
Q Consensus 26 gg~f~~~i~fp~~yP~-------~pP~v~f~ 49 (124)
.|.|.|.-.+|--||. .||.|+|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5999999999999975 89999986
No 58
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=21.02 E-value=53 Score=23.58 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=11.3
Q ss_pred ecccCCccCCCCeeec
Q 033234 51 RINMTCVNQETGMVEP 66 (124)
Q Consensus 51 ~i~Hpnv~~~~G~icl 66 (124)
++|||+.| -|.+|.
T Consensus 50 PiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 50 PIYHPSTD--CGDHVV 63 (165)
T ss_pred CccCCccC--CCCEEE
Confidence 68999999 687663
No 59
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=20.85 E-value=1.1e+02 Score=23.39 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=21.4
Q ss_pred CCCEEEEEEEeCCCCC------------------CCCCCceeee
Q 033234 25 EGRIYQLKLFCGTDYP------------------DNPPSVRFQT 50 (124)
Q Consensus 25 egg~f~~~i~fp~~yP------------------~~pP~v~f~t 50 (124)
+.|.|.|.-..|.-|| ..||.|+|.-
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~V 192 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYKV 192 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEEE
Confidence 3589999999999996 4788888873
No 60
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=20.64 E-value=2e+02 Score=20.69 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=17.7
Q ss_pred EEEEEEeCCCCCCCCCCceeeee
Q 033234 29 YQLKLFCGTDYPDNPPSVRFQTR 51 (124)
Q Consensus 29 f~~~i~fp~~yP~~pP~v~f~t~ 51 (124)
-.++|.| .+|-..||+|.|..+
T Consensus 55 ~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 55 LRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred eEEEEec-cccCcCCCceEEecc
Confidence 4566666 789999999999876
No 61
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=20.22 E-value=1.9e+02 Score=22.39 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=28.5
Q ss_pred eEEEEEECCCCCCC-CC---CEEEEEEEeC-----CCCCCCCCCceeeeecc
Q 033234 11 SWTGTIIGPPNTVH-EG---RIYQLKLFCG-----TDYPDNPPSVRFQTRIN 53 (124)
Q Consensus 11 ~W~~~i~Gp~~tpy-eg---g~f~~~i~fp-----~~yP~~pP~v~f~t~i~ 53 (124)
=|++.... .+|-- .| ..|+..+.+. .|-||++|+|+.+++-|
T Consensus 104 PWkl~YrV-~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 104 PWKLYYRV-EDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CeEEEEEe-ecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 47777773 44433 33 3455666665 68899999999998765
Done!