BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033236
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 95/119 (79%), Gaps = 2/119 (1%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEAS 62
KS+VL+VGGTGYIG+RIV AS++ GH TYVL RP++ +IDK+QMLL FK+ GA LIEAS
Sbjct: 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEAS 63
Query: 63 FADHRSLVEAVKRVDVVICTISGVHFRSHNILMQLKLVDAIREAGNVKKRKLNE-GMIP 120
DH+ LV+A+K+VDVVI ++G SH+IL QLKLV+AI+EAGN+K+ +E GM P
Sbjct: 64 LDDHQRLVDALKQVDVVISALAG-GVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDP 121
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 7/113 (6%)
Query: 1 MG-KSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGL-DIDKLQMLLSFKKQGAHL 58
MG +S++L++G TGYIGR + KASL GH T++L R + +K Q+L SFK GA++
Sbjct: 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANI 60
Query: 59 IEASFADHRSLVEAVKRVDVVICTISGVHFRSHNILMQLKLVDAIREAGNVKK 111
+ S DH SLVEAVK VDVVI T+ + S Q+ ++ AI+E G VK+
Sbjct: 61 VHGSIDDHASLVEAVKNVDVVISTVGSLQIES-----QVNIIKAIKEVGTVKR 108
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 9/109 (8%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEAS 62
KSK+L+ GGTGYIG +VK SL GH TYV RP+ K +L F+ GA +++
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSS----KTTLLDEFQSLGAIIVKGE 66
Query: 63 FADHRSLVEAVKRVDVVICTISGVHFRSHNILMQLKLVDAIREAGNVKK 111
+H LVE +K+VDVVI ++ IL Q K+++AI+ AGN+K+
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQ-----ILDQFKILEAIKVAGNIKR 110
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 9/109 (8%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEAS 62
KSK+L+ GGTGYIG +VK SL GH TYV RP+ K +L F+ GA +++
Sbjct: 7 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSS----KTTLLDEFQSLGAIIVKGE 62
Query: 63 FADHRSLVEAVKRVDVVICTISGVHFRSHNILMQLKLVDAIREAGNVKK 111
+H LVE +K+VDVVI ++ IL Q K+++AI+ AGN+K+
Sbjct: 63 LDEHEKLVELMKKVDVVISALAFPQ-----ILDQFKILEAIKVAGNIKR 106
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 9/109 (8%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEAS 62
KSK+L+ GGTGYIG +VK SL GH TYV RP+ K +L F+ GA +++
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSS----KTTLLDEFQSLGAIIVKGE 66
Query: 63 FADHRSLVEAVKRVDVVICTISGVHFRSHNILMQLKLVDAIREAGNVKK 111
+H LVE +K+VDVVI ++ IL Q K+++AI+ AGN+K+
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQ-----ILDQFKILEAIKVAGNIKR 110
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 9/109 (8%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEAS 62
KSK+L+ GGTGYIG +VK SL GH TYV RP+ K +L F+ GA +++
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSS----KTTLLDEFQSLGAIIVKGE 66
Query: 63 FADHRSLVEAVKRVDVVICTISGVHFRSHNILMQLKLVDAIREAGNVKK 111
+H LVE +K+VDVVI ++ + L Q K+++AI+ AGN+K+
Sbjct: 67 LDEHEKLVELMKKVDVVISALAVPQY-----LDQFKILEAIKVAGNIKR 110
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGL--DIDKLQMLLSFKKQGAHLIE 60
++K+L++G TG IGR IV AS+ G+ TY L R I K +++ +++ G L+E
Sbjct: 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLE 61
Query: 61 ASFADHRSLVEAVKRVDVVICTISGVHFRSHNILMQLKLVDAIREAGNVKK 111
DH +LV+A+K+VD+VIC + Q+K++ AI+EAGNVKK
Sbjct: 62 GDINDHETLVKAIKQVDIVICAAGRLLIED-----QVKIIKAIKEAGNVKK 107
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRP-DIGLDIDKLQMLLSFKKQGAHLIEASF 63
K+++ GGTGYIG+ +V+ASL+ H T++ RP +Q+ F+ G +IE
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 64 ADHRSLVEAVKRVDVVICTISGVHFRSHNILMQLKLVDAIREAGNVKK 111
+H +V +K+VD+VI + S Q+ +++AI+ AGN+K+
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFPMISS-----QIHIINAIKAAGNIKR 108
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEAS 62
K +VL+ G TG+IG+ + ASL TY+L RP K ++ + + +GA ++
Sbjct: 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG-PRSPSKAKIFKALEDKGAIIVYGL 68
Query: 63 FADHRSLVEAVK--RVDVVICTISGVHFRSHNILMQLKLVDAIREAGNVKK 111
+ ++ + +K +D+V+ T+ G +IL Q+ LV A++ G +K+
Sbjct: 69 INEQEAMEKILKEHEIDIVVSTVGG-----ESILDQIALVKAMKAVGTIKR 114
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 1 MGKSKVLVVGGTGYIGRRIVKASLAQGHETYVLQR-PDIGLDIDKLQMLLSFKKQGA-HL 58
+GK VVGGTG++ +VK L +G+ R PD + K+ LL ++ G +
Sbjct: 7 IGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPD---NQKKVSHLLELQELGDLKI 63
Query: 59 IEASFADHRSLVEAVKRVDVVICTISGVHFRSHN 92
A D S + D V + VHF S +
Sbjct: 64 FRADLTDELSFEAPIAGCDFVFHVATPVHFASED 97
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGH--ETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIE 60
K +V V GGTG++G I+K+ L G+ T + P+ D+ L L ++ H
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEK-LHFFN 59
Query: 61 ASFADHRSLVEAVKRVDVVICTISGVHF 88
A ++ S A++ + T S + F
Sbjct: 60 ADLSNPDSFAAAIEGCVGIFHTASPIDF 87
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGH-ETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEA 61
+++VL++G G+IG + + L + H E Y GLDI + H +E
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVY-------GLDIGSDAISRFLNHPHFHFVEG 65
Query: 62 SFADHRSLVEA-VKRVDVVICTIS 84
+ H +E VK+ DVV+ ++
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVA 89
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGH-ETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEA 61
+++VL++G G+IG + + L + H E Y GLDI + H +E
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVY-------GLDIGSDAISRFLNHPHFHFVEG 65
Query: 62 SFADHRSLVEA-VKRVDVVICTIS 84
+ H +E VK+ DVV+ ++
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVA 89
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGH-ETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEA 61
+++VL++G G+IG + + L + H E Y GLDI + H +E
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVY-------GLDIGSDAISRFLNHPHFHFVEG 65
Query: 62 SFADHRSLVEA-VKRVDVVICTIS 84
+ H +E VK+ DVV+ ++
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVA 89
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGH-ETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEA 61
+++VL++G G+IG + + L + H E Y GLDI + H +E
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVY-------GLDIGSDAISRFLNHPHFHFVEG 65
Query: 62 SFADHRSLVEA-VKRVDVVICTIS 84
+ H +E VK+ DVV+ ++
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVA 89
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGH-ETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEA 61
+++VL++G G+IG + + L + H E Y GLDI + H +E
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVY-------GLDIGSDAISRFLNHPHFHFVEG 65
Query: 62 SFADHRSLVEA-VKRVDVVICTIS 84
+ H +E VK+ DVV+ ++
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVA 89
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 33.1 bits (74), Expect = 0.040, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGH-ETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEA 61
+++VL++G G+IG + + L + H E Y GLDI + H +E
Sbjct: 315 RTRVLILGVNGFIGNHLTERLLREDHYEVY-------GLDIGSDAISRFLNHPHFHFVEG 367
Query: 62 SFADHRSLVE-AVKRVDVVI 80
+ H +E VK+ DVV+
Sbjct: 368 DISIHSEWIEYHVKKCDVVL 387
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 4 SKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASF 63
S ++V GG G+IG +V L++ +E V+ G + F + A L++A
Sbjct: 2 SLIVVTGGAGFIGSHVVD-KLSESNEIVVIDNLSSGNE--------EFVNEAARLVKADL 52
Query: 64 A-----DHRSLVEAVKRV----DVVICTISGVHFRSHNILMQLKLVDAIREAG 107
A D+ E V + DV I + +N+L +L++A+R+AG
Sbjct: 53 AADDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG 105
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGH-ETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASF 63
+VL++G G+IG + + L + H E Y GLDI + H +E
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVY-------GLDIGSDAISRFLNHPHFHFVEGDI 54
Query: 64 ADHRSLVEA-VKRVDVVICTIS 84
+ H +E VK+ DVV+ ++
Sbjct: 55 SIHSEWIEYHVKKCDVVLPLVA 76
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHE-TYVLQRPDIG-LDIDKL 45
+VLV GGTG+IG + + A+GHE T V ++P G + D+L
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDEL 44
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 36/130 (27%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASFA 64
+VLV GG+GYIG L GH+ +L L + K+ +IE
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN------------LCNSKRSVLPVIERLGG 49
Query: 65 DHRSLVEAVKRVDVVICTI-------SGVHFR----------------SHNILMQLKLVD 101
H + VE R + ++ I + +HF +N+ L+L+
Sbjct: 50 KHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLIS 109
Query: 102 AIREAGNVKK 111
A+R A NVK
Sbjct: 110 AMR-AANVKN 118
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 36/130 (27%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASFA 64
+VLV GG+GYIG L GH+ +L L + K+ +IE
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN------------LCNSKRSVLPVIERLGG 49
Query: 65 DHRSLVEAVKRVDVVICTI-------SGVHFR----------------SHNILMQLKLVD 101
H + VE R + ++ I + +HF +N+ L+L+
Sbjct: 50 KHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLIS 109
Query: 102 AIREAGNVKK 111
A+R A NVK
Sbjct: 110 AMR-AANVKN 118
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 36/130 (27%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASFA 64
+VLV GG+GYIG L GH+ +L L + K+ +IE
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN------------LCNSKRSVLPVIERLGG 49
Query: 65 DHRSLVEAVKRVDVVICTI-------SGVHFR----------------SHNILMQLKLVD 101
H + VE R + ++ I + +HF +N+ L+L+
Sbjct: 50 KHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLIS 109
Query: 102 AIREAGNVKK 111
A+R A NVK
Sbjct: 110 AMR-AANVKN 118
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 36/130 (27%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASFA 64
+VLV GG+GYIG L GH+ +L L + K+ +IE
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN------------LCNSKRSVLPVIERLGG 49
Query: 65 DHRSLVEAVKRVDVVICTI-------SGVHFR----------------SHNILMQLKLVD 101
H + VE R + ++ I + +HF +N+ L+L+
Sbjct: 50 KHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLIS 109
Query: 102 AIREAGNVKK 111
A+R A NVK
Sbjct: 110 AMR-AANVKN 118
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 36/130 (27%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASFA 64
+VLV GG+GYIG L GH+ +L L + K+ +IE
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN------------LCNSKRSVLPVIERLGG 49
Query: 65 DHRSLVEAVKRVDVVICTI-------SGVHFR----------------SHNILMQLKLVD 101
H + VE R + ++ I + +HF +N+ L+L+
Sbjct: 50 KHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLIS 109
Query: 102 AIREAGNVKK 111
A+R A NVK
Sbjct: 110 AMR-AANVKN 118
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 36/130 (27%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASFA 64
+VLV GG+GYIG L GH+ +L L + K+ +IE
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN------------LCNSKRSVLPVIERLGG 49
Query: 65 DHRSLVEAVKRVDVVICTI-------SGVHFR----------------SHNILMQLKLVD 101
H + VE R + ++ I + +HF +N+ L+L+
Sbjct: 50 KHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLIS 109
Query: 102 AIREAGNVKK 111
A+R A NVK
Sbjct: 110 AMR-AANVKN 118
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 36/130 (27%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASFA 64
+VLV GG+GYIG L GH+ +L L + K+ +IE
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN------------LCNSKRSVLPVIERLGG 49
Query: 65 DHRSLVEAVKRVDVVICTI-------SGVHFR----------------SHNILMQLKLVD 101
H + VE R + ++ I + +HF +N+ L+L+
Sbjct: 50 KHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLIS 109
Query: 102 AIREAGNVKK 111
A+R A NVK
Sbjct: 110 AMR-AANVKN 118
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 36/130 (27%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASFA 64
+VLV GG+GYIG L GH+ +L L + K+ +IE
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN------------LCNSKRSVLPVIERLGG 49
Query: 65 DHRSLVEAVKRVDVVICTI-------SGVHFR----------------SHNILMQLKLVD 101
H + VE R + ++ I + +HF +N+ L+L+
Sbjct: 50 KHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLIS 109
Query: 102 AIREAGNVKK 111
A+R A NVK
Sbjct: 110 AMR-AANVKN 118
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 36/130 (27%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASFA 64
+VLV GG+GYIG L GH+ +L L + K+ +IE
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN------------LCNSKRSVLPVIERLGG 49
Query: 65 DHRSLVEAVKRVDVVICTI-------SGVHFR----------------SHNILMQLKLVD 101
H + VE R + ++ I + +HF +N+ L+L+
Sbjct: 50 KHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLIS 109
Query: 102 AIREAGNVKK 111
A+R A NVK
Sbjct: 110 AMR-AANVKN 118
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 36/130 (27%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASFA 64
+VLV GG+GYIG L GH+ +L L + K+ +IE
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN------------LCNSKRSVLPVIERLGG 49
Query: 65 DHRSLVEAVKRVDVVICTI-------SGVHFR----------------SHNILMQLKLVD 101
H + VE R + ++ I + +HF +N+ L+L+
Sbjct: 50 KHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLIS 109
Query: 102 AIREAGNVKK 111
A+R A NVK
Sbjct: 110 AMR-AANVKN 118
>pdb|2Z5L|A Chain A, The First Ketoreductase Of The Tylosin Pks
Length = 511
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 6 VLVVGGTGYIGRRIVKASLAQGHETYVL 33
VL+ GG G IGRR+ + A+G E VL
Sbjct: 262 VLITGGMGAIGRRLARRLAAEGAERLVL 289
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVL 33
K ++L+ GG G+IG + +A +A G E VL
Sbjct: 7 KHRILITGGAGFIGGHLARALVASGEEVTVL 37
>pdb|2K5L|A Chain A, Solution Nmr Structure Of Protein Feoa From Clostridium
Thermocellum, Northeast Structural Genomics Consortium
Target Cmr17
Length = 81
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIG--LDIDKLQMLLSFKKQGAHLIEAS 62
KV+ + GTG + RRI+ + +G E Y+ + +G + I+ LS +K A +IE
Sbjct: 14 KVVKLHGTGALKRRIMDMGITRGCEIYIRKVAPLGDPIQINVRGYELSLRKSAAEMIEVE 73
Query: 63 F 63
Sbjct: 74 L 74
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 25/97 (25%)
Query: 1 MGKSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDI-------------DKL-- 45
+G+ + + G T + VKA LA+G++ ++ D LD DK
Sbjct: 668 VGEENIFIFGHT----VKQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAF 723
Query: 46 -QMLLSFKKQGA--HLIEASFADHRSLVEAVKRVDVV 79
QML S KQG +L+ A FA + VEA K+VDV+
Sbjct: 724 DQMLHSIGKQGGDPYLVMADFA---AYVEAQKQVDVL 757
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad And Udp
Length = 330
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQR 35
++L+ GG G +G +++ L QGHE V+
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQGHEILVIDN 52
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 25/97 (25%)
Query: 1 MGKSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDI-------------DKL-- 45
+G+ + + G T + VKA LA+G++ ++ D LD DK
Sbjct: 669 VGEENIFIFGHT----VKQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAF 724
Query: 46 -QMLLSFKKQGA--HLIEASFADHRSLVEAVKRVDVV 79
QML S KQG +L+ A FA + VEA K+VDV+
Sbjct: 725 DQMLHSIGKQGGDPYLVMADFA---AYVEAQKQVDVL 758
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVL 33
+VLV GG G+IG IV+ LA+G E VL
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVL 30
>pdb|3H05|A Chain A, The Crystal Structure Of A Putative Nicotinate-Nucleotide
Adenylyltransferase From Vibrio Parahaemolyticus
pdb|3H05|B Chain B, The Crystal Structure Of A Putative Nicotinate-Nucleotide
Adenylyltransferase From Vibrio Parahaemolyticus
Length = 177
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 66 HRSLVEAVKRVDVVICTISGVHFRSHNIL---MQLKLVDA-IREAG--NVKKRKLNEGM 118
H+S++E++ D+V+ S H N+L ++ KLVDA I++ G NV++ L + +
Sbjct: 18 HKSVIESLSHFDLVLLEPSIAHAWGKNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQAL 76
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 36/127 (28%)
Query: 1 MGKSKVLVVGGTGYIGRRIVKASLAQGHETYVLQR-PDIG-LDIDKLQMLLSFKKQGAHL 58
M K+LV GG G+IG ++ Y+L++ PD ++IDK L + A+L
Sbjct: 1 MHSMKLLVTGGMGFIGSNFIR---------YILEKHPDWEVINIDK----LGYGSNPANL 47
Query: 59 -----------IEASFADHRSLVEAVKRVDVVICTISGVH----------FRSHNILMQL 97
++ AD+ + E V++VD V+ + H F N++
Sbjct: 48 KDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTY 107
Query: 98 KLVDAIR 104
L+++IR
Sbjct: 108 TLLESIR 114
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 25/97 (25%)
Query: 1 MGKSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDI-------------DKL-- 45
+G+ + + G T VKA LA+G++ ++ D LD DK
Sbjct: 668 VGEENIFIFGHT----VEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAF 723
Query: 46 -QMLLSFKKQGA--HLIEASFADHRSLVEAVKRVDVV 79
QML S KQG +L+ A FA + VEA K+VDV+
Sbjct: 724 DQMLHSIGKQGGDPYLVMADFA---AYVEAQKQVDVL 757
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 25/97 (25%)
Query: 1 MGKSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDI-------------DKL-- 45
+G+ + + G T VKA LA+G++ ++ D LD DK
Sbjct: 668 VGEENIFIFGHT----VEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAF 723
Query: 46 -QMLLSFKKQGA--HLIEASFADHRSLVEAVKRVDVV 79
QML S KQG +L+ A FA + VEA K+VDV+
Sbjct: 724 DQMLHSIGKQGGDPYLVMADFA---AYVEAQKQVDVL 757
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVL 33
+VLV GG GYIG V+A L + + V+
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVI 32
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 1 MGKSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIE 60
M KVL++G G+IG + K L ET + + + D+L L+ K + H E
Sbjct: 22 MKAKKVLILGVNGFIGHHLSKRIL----ETTDWEVFGMDMQTDRLGDLV--KHERMHFFE 75
Query: 61 ASFADHRSLVEA-VKRVDVVICTIS 84
++ VE VK+ DV++ ++
Sbjct: 76 GDITINKEWVEYHVKKCDVILPLVA 100
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQR 35
K+ V GGTG++G+ +V++ G+ +L R
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTR 34
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 1 MGKSKVLVVGGTGYIGRRIVKASLAQG 27
+ + V+VVGG G++G +VK L G
Sbjct: 30 LANTNVMVVGGAGFVGSNLVKRLLELG 56
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVL 33
+ ++L+ GG G++G + + GHE V+
Sbjct: 5 RKRILITGGAGFVGSHLTDKLMMDGHEVTVV 35
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 6 VLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASFAD 65
VLV GG GYIG V + G++ V D + L K E D
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLS-NSTYDSVARLEVLTKHHIPFYEVDLCD 72
Query: 66 HRSLVEAVK--RVDVVI 80
+ L + K ++D VI
Sbjct: 73 RKGLEKVFKEYKIDSVI 89
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of
Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus
Anthracis Str. Ames In Complex With Nad
Length = 346
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETY 31
+LV GG G+IG V L Q +ETY
Sbjct: 26 NILVTGGAGFIGSNFVHYXL-QSYETY 51
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 4 SKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLS 50
+K+L+ GG G++G + +L+QG + V D L L S
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS 48
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHE 29
K +LV GG GYIG LA G++
Sbjct: 5 KGTILVTGGAGYIGSHTAVELLAHGYD 31
>pdb|3EWB|X Chain X, Crystal Structure Of N-Terminal Domain Of Putative 2-
Isopropylmalate Synthase From Listeria Monocytogenes
Length = 293
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 34 QRPDIGLDI-DKLQMLLSFKKQGAHLIEASFA-DHRSLVEAVKRVDVVI--CTISGV 86
Q P + D+ +K+Q+ L +K G +IEA F E VK + I C+++G+
Sbjct: 18 QTPGVNFDVKEKIQIALQLEKLGIDVIEAGFPISSPGDFECVKAIAKAIKHCSVTGL 74
>pdb|3EW7|A Chain A, Crystal Structure Of The Lmo0794 Protein From Listeria
Monocytogenes. Northeast Structural Genomics Consortium
Target Lmr162
Length = 221
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQR 35
K+ ++G TG G RI++ + +GHE + R
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVR 32
>pdb|1X1E|A Chain A, Crystal Structure Of Tt0495 Protein From Thermus
Thermophilus Hb8
pdb|2EKP|A Chain A, Structure Of Tt0495 Protein From Thermus Thermophilus
pdb|2EKQ|A Chain A, Structure Of Tt0495 Protein From Thermus Thermophilus
pdb|2EKQ|B Chain B, Structure Of Tt0495 Protein From Thermus Thermophilus
pdb|2EKQ|C Chain C, Structure Of Tt0495 Protein From Thermus Thermophilus
pdb|2EKQ|D Chain D, Structure Of Tt0495 Protein From Thermus Thermophilus
Length = 239
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVLQR 35
+ K LV GG+ IGR I +A +A+G+ + R
Sbjct: 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASR 34
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKKQGAHLIEASFA 64
K V+G TG +G +A A GH+ ++ RP ++Q L + + A
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPS-----SQIQRLAYLEPE---CRVAEML 66
Query: 65 DHRSLVEAVKRVDVVICTISGVHFRSHNILMQLKLVDAI 103
DH L A++ +D VI S ++ S Q ++ A+
Sbjct: 67 DHAGLERALRGLDGVI--FSAGYYPSRPRRWQEEVASAL 103
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
With Reduced Fad
Length = 384
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVL-QRPDIG 39
KSK +++ G G+ G I + +GH+ +++ QR IG
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG 39
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVL-QRPDIG 39
KSK +++ G G+ G I + +GH+ +++ QR IG
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG 39
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVL-QRPDIG 39
KSK +++ G G+ G I + +GH+ +++ QR IG
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG 39
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGH 28
KVLV GG GYIG V L G+
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGH 28
KVLV GG GYIG V L G+
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGH 28
KVLV GG GYIG V L G+
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGY 27
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVL 33
+ ++L+ GG G++G + GHE V+
Sbjct: 27 RKRILITGGAGFVGSHLTDKLXXDGHEVTVV 57
>pdb|3U9L|A Chain A, The Crystal Structure Of
3-Oxoacyl-[acyl-Carrier-Protein] Reductase (Nadph) From
Sinorhizobium Meliloti
Length = 324
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 3 KSKVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKLQMLLSFKK 53
K +L+ G + GR +A GH Y R +G + ++ + F +
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVYASXRDIVGRNASNVEAIAGFAR 55
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 6 VLVVGGTGYIGRRIVKA 22
++V GG G+IG IVKA
Sbjct: 2 IIVTGGAGFIGSNIVKA 18
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 6 VLVVGGTGYIGRRIVKA 22
++V GG G+IG IVKA
Sbjct: 49 IIVTGGAGFIGSNIVKA 65
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 7 LVVGGTGYIGRRIVKASLAQGHETYVLQRPD 37
L+ G TG++G +++A H Y R D
Sbjct: 73 LLTGATGFLGAYLIEALQGYSHRIYCFIRAD 103
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 7 LVVGGTGYIGRRIVKASLAQGHETYVLQRPD 37
L+ G TG++G +++A H Y R D
Sbjct: 154 LLTGATGFLGAYLIEALQGYSHRIYCFIRAD 184
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
Length = 361
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 5 KVLVVGGTGYIGRRIVKASLAQGHETYVLQRPDIGLDIDKL 45
K+L+ GG G+IG +V+ + +T V +IDKL
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVV--------NIDKL 34
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 4 SKVLVVGGTGYIGRRIVKASLAQG 27
+ +L+ GG GYIG VK + +G
Sbjct: 2 NSILICGGAGYIGSHAVKKLVDEG 25
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 41 DIDKLQMLLSFKKQGAHLIEASFADHRSLVEAVK 74
D D +Q LL FK + H+IE F + V +K
Sbjct: 341 DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMK 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,290,097
Number of Sequences: 62578
Number of extensions: 113826
Number of successful extensions: 669
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 102
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)