BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033240
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IKT|A Chain A, Liganded Sterol Carrier Protein Type 2 (Scp-2) Like Domain
Of Human Multifunctional Enzyme Type 2 (Mfe-2)
Length = 120
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 3 DSTQLKSDALLEQMKQHLSTDAGKAVVKKLGLVYQINIAPKKMGFDEVTYTVDLKKGEVT 62
+ +L+S + E++ + L D G VVKK+ V++ +I K G +T+DLK G +
Sbjct: 2 EGGKLQSTFVFEEIGRRLK-DIGPEVVKKVNAVFEWHIT--KGGNIGAKWTIDLKSG--S 56
Query: 63 KGSYEG---GKPDATFTFKDDDFVKVATGKMNPQIAFMRGLMKVKGSLSAAQKF 113
Y+G G D T D+DF++V GK++PQ AF G +K +G++ +QK
Sbjct: 57 GKVYQGPAKGAADTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNIMLSQKL 110
>pdb|1QND|A Chain A, Sterol Carrier Protein-2, Nmr, 20 Structures
Length = 123
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 29 VKKLGLVYQINIAPKKMGFDEVTYTVDLKKGEVTKGSYEGGKPDATFTFKDDDFVKVATG 88
VKK+G ++ + G E T+ VD+K G+ + K D T T D DF+ + TG
Sbjct: 28 VKKIGGIFAFKVKDGPGG-KEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTG 86
Query: 89 KMNPQIAFMRGLMKVKGSLSAAQKF 113
KMNPQ AF +G +K+ G++ A K
Sbjct: 87 KMNPQSAFFQGKLKITGNMGLAMKL 111
>pdb|2C0L|B Chain B, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 122
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 29 VKKLGLVYQINIAPKKMGFDEVTYTVDLKKGEVTKGSYEGGKPDATFTFKDDDFVKVATG 88
VKK+G ++ + G E T+ VD+K G+ + K D T T D DF+ + TG
Sbjct: 27 VKKIGGIFAFKVKDGPGG-KEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTG 85
Query: 89 KMNPQIAFMRGLMKVKGSLSAAQKF 113
KMNPQ AF +G +K+ G++ A K
Sbjct: 86 KMNPQSAFFQGKLKITGNMGLAMKL 110
>pdb|1C44|A Chain A, Sterol Carrier Protein 2 (Scp2) From Rabbit
Length = 123
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 29 VKKLGLVYQINIAPKKMGFDEVTYTVDLKKGEVTKGSYEGGKPDATFTFKDDDFVKVATG 88
VKK+G ++ + G E T+ VD+K G+ + K D T T D D + + TG
Sbjct: 28 VKKIGGIFAFKVKDGPGG-KEATWVVDVKNGKGSVLPNSDKKADCTITMADSDLLALMTG 86
Query: 89 KMNPQIAFMRGLMKVKGSLSAAQKF 113
KMNPQ AF +G +K+ G++ A K
Sbjct: 87 KMNPQSAFFQGKLKITGNMGLAMKL 111
>pdb|2OLU|A Chain A, Structural Insight Into The Transglycosylation Step Of
Bacterial Cell Wall Biosynthesis : Apoenzyme
pdb|2OLV|A Chain A, Structural Insight Into The Transglycosylation Step Of
Bacterial Cell Wall Biosynthesis : Donor Ligand Complex
pdb|2OLV|B Chain B, Structural Insight Into The Transglycosylation Step Of
Bacterial Cell Wall Biosynthesis : Donor Ligand Complex
Length = 669
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 13 LEQMKQHLSTDAGKAVVKKLGLVYQINIAPKKM 45
+ +KQ+ DA K KLGL Y+ +I P ++
Sbjct: 405 WQSVKQNAGNDAPKKFAAKLGLNYEGDIGPSEV 437
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 6 QLKSDALLEQMKQHLSTDAGKAVVKKLGLVYQINIAPKKMGFDEVTYTVDLKKGEVTKGS 65
QL SD + K L +G+ K LG + K F V ++ G+ ++G+
Sbjct: 39 QLFSDICPKTCKNFLCLCSGE---KGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGN 95
Query: 66 YEGGKPDATFTFKDDDFV 83
+GG+ FKD++F+
Sbjct: 96 GKGGESIYGGYFKDENFI 113
>pdb|3DWK|A Chain A, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|B Chain B, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|C Chain C, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
pdb|3DWK|D Chain D, Identification Of Dynamic Structural Motifs Involved In
Peptidoglycan Glycosyltransfer
Length = 625
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 13 LEQMKQHLSTDAGKAVVKKLGLVYQINIAPKKM 45
+ +KQ+ DA K KLGL Y+ +I P ++
Sbjct: 396 WQSVKQNAGNDAPKKFAAKLGLNYEGDIGPSEV 428
>pdb|3CNU|A Chain A, Crystal Structure Of The Predicted Coding Region Af_1534
From Archaeoglobus Fulgidus
Length = 116
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 67 EGGKPDATFTF--KDDDFVKVATGKMNPQIAFMRGLMKVKGSLSAAQKFT 114
EG TFT D ++ V G+ +P FM G +++G++ AQ+
Sbjct: 55 EGVHSSPTFTVVAPPDFWLAVLKGQEDPVSGFMMGKYRIEGNIMEAQRLA 104
>pdb|3BKR|A Chain A, Crystal Structure Of Sterol Carrier Protein-2 Like-3
(Scp2- L3) From Aedes Aegypti
pdb|3BKS|A Chain A, Crystal Structure Of Sterol Carrier Protein-2 Like-3
(Scp2- L3) From Aedes Aegypti
Length = 126
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 55 DLKKGEV-----TKGSYEGGKPDATFTFKDDDFVKVATGKMNPQIAFMRGLMKVKGS 106
DLK E+ + Y + DA+ T D+DF VAT + + +G + + G+
Sbjct: 56 DLKISEIELAVTSTADYPAERIDASITIDDNDFYLVATKETSFAALIEQGKVDITGN 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,670,246
Number of Sequences: 62578
Number of extensions: 147081
Number of successful extensions: 236
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 13
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)