Query 033240
Match_columns 124
No_of_seqs 157 out of 1063
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:31:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4170 2-enoyl-CoA hydratase/ 100.0 1.1E-28 2.4E-33 162.0 9.4 112 7-124 2-113 (113)
2 PF14864 Alkyl_sulf_C: Alkyl s 99.8 2.8E-20 6.2E-25 125.6 10.7 106 6-121 10-116 (125)
3 PF02036 SCP2: SCP-2 sterol tr 99.8 1.6E-19 3.5E-24 116.9 8.9 87 26-118 14-101 (102)
4 COG2015 Alkyl sulfatase and re 99.5 8.5E-14 1.8E-18 110.8 8.3 106 6-121 539-645 (655)
5 COG3255 Putative sterol carrie 99.4 2E-12 4.4E-17 88.2 8.2 64 50-114 52-115 (134)
6 COG3154 Putative lipid carrier 98.2 3.3E-06 7.3E-11 58.7 5.7 64 49-114 61-124 (168)
7 PF13530 SCP2_2: Sterol carrie 97.3 0.0023 5E-08 46.7 8.2 83 33-121 130-212 (218)
8 PRK01346 hypothetical protein; 96.3 0.015 3.3E-07 45.9 6.6 83 33-121 320-402 (411)
9 COG3165 Uncharacterized protei 93.9 0.24 5.2E-06 36.0 5.9 74 33-115 34-110 (204)
10 PF07398 MDMPI_C: MDMPI C-term 90.9 2.3 4.9E-05 26.1 7.0 38 69-111 44-81 (82)
11 PRK11705 cyclopropane fatty ac 51.9 17 0.00037 28.8 3.1 42 71-113 35-78 (383)
12 TIGR03084 conserved hypothetic 50.9 24 0.00052 26.1 3.6 36 69-108 200-235 (253)
13 KOG0541 Alkyl hydroperoxide re 50.4 46 0.001 23.6 4.7 37 46-82 132-168 (171)
14 KOG0180 20S proteasome, regula 48.9 30 0.00065 24.9 3.6 35 4-38 154-188 (204)
15 COG4552 Eis Predicted acetyltr 44.4 76 0.0017 25.5 5.5 47 71-120 334-380 (389)
16 cd04757 Commd9 COMM_Domain con 42.6 45 0.00097 21.9 3.5 38 51-89 59-96 (108)
17 PF07305 DUF1454: Protein of u 40.7 77 0.0017 23.1 4.7 48 5-54 137-184 (200)
18 KOG2004 Mitochondrial ATP-depe 25.8 41 0.0009 29.6 1.5 52 50-107 788-839 (906)
19 PF12599 DUF3768: Protein of u 23.2 2E+02 0.0044 18.0 4.1 29 49-77 48-76 (84)
20 COG1471 RPS4A Ribosomal protei 22.9 1.9E+02 0.0042 21.7 4.3 63 50-113 15-81 (241)
21 PF07492 Trehalase_Ca-bi: Neut 22.3 91 0.002 15.7 1.8 20 31-54 9-28 (30)
22 PF03633 Glyco_hydro_65C: Glyc 21.1 1.6E+02 0.0035 16.1 5.0 32 49-81 18-49 (54)
23 PF08638 Med14: Mediator compl 21.1 74 0.0016 22.9 1.9 26 53-80 169-194 (195)
24 PF08414 NADPH_Ox: Respiratory 20.7 35 0.00076 22.1 0.1 20 1-21 56-75 (100)
25 COG0678 AHP1 Peroxiredoxin [Po 20.1 3.2E+02 0.007 19.3 4.8 19 46-64 126-144 (165)
No 1
>KOG4170 consensus 2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes [Lipid transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=161.95 Aligned_cols=112 Identities=46% Similarity=0.736 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHhcccchhhhhhhccceEEEEEeecCCCCCceeEEEEEeecCeEEeccCCCCCCcEEEEEeHHHHHHHH
Q 033240 7 LKSDALLEQMKQHLSTDAGKAVVKKLGLVYQINIAPKKMGFDEVTYTVDLKKGEVTKGSYEGGKPDATFTFKDDDFVKVA 86 (124)
Q Consensus 7 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~i~~~~~g~~~~~~~l~l~~G~~~~g~~~~~~~d~tl~~~~~~~~~l~ 86 (124)
++++.+|+.+..++.+ ++++.++++|||+|++.+ |+ .++|+|+++||..+.+.+...+||+|+++++++|.+|+
T Consensus 2 ~~~~~i~e~i~~~l~~----~~vkkvg~vfqfni~~~~-~~-~~~w~lDlK~g~g~~~~g~~~~~Dv~~ti~d~dF~~l~ 75 (113)
T KOG4170|consen 2 FKSDEIFEKIKEHLKE----DLVKKVGAVFQFNITDAD-GG-QETWTLDLKNGSGSVGPGSSGKVDVTFTIADEDFVKLL 75 (113)
T ss_pred CccHHHHHHHHHHhhH----HHHHHHhhEEEEEEecCC-CC-eEEEEEEccCCccccccCCCCCccEEEEecHHHHHHHH
Confidence 5688999999999987 478999999999999874 33 45999999999866555544899999999999999999
Q ss_pred cCCCCHHHHHHccCeEEEeCHHHHhccCCccCCCCCCC
Q 033240 87 TGKMNPQIAFMRGLMKVKGSLSAAQKFTPDLFPKPSKM 124 (124)
Q Consensus 87 ~G~~~~~~A~~~Gklki~Gd~~~~~~l~~~lf~~~~~~ 124 (124)
+|+++|+.|||+||+||+||+++|++|.+.+.+..+||
T Consensus 76 tgKl~Pq~Afm~GKlKIkG~~~~AmKL~~l~~~~~akL 113 (113)
T KOG4170|consen 76 TGKLNPQTAFMQGKLKIKGNMALAMKLEPLLRALNAKL 113 (113)
T ss_pred hCCCChHHHHHcCCeeecCCHHHHHHHHHHHhhhhccC
Confidence 99999999999999999999999999996665566775
No 2
>PF14864 Alkyl_sulf_C: Alkyl sulfatase C-terminal; PDB: 2CG2_A 2CG3_A 2CFU_A 2CFZ_A 2YHE_C.
Probab=99.84 E-value=2.8e-20 Score=125.59 Aligned_cols=106 Identities=20% Similarity=0.313 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHhcccchhhhhhhccceEEEEEeecCCCCCceeEEEEEeecCeEEeccC-CCCCCcEEEEEeHHHHHH
Q 033240 6 QLKSDALLEQMKQHLSTDAGKAVVKKLGLVYQINIAPKKMGFDEVTYTVDLKKGEVTKGSY-EGGKPDATFTFKDDDFVK 84 (124)
Q Consensus 6 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~i~~~~~g~~~~~~~l~l~~G~~~~g~~-~~~~~d~tl~~~~~~~~~ 84 (124)
+++++++|++|+.|+++++ +.+.+.+++|+++|. ++.|.+.++||++++... ...+||+|+++++.+|.+
T Consensus 10 ~m~~~~~fd~lavrld~~k----A~~~~~~in~~~~D~-----~e~~~l~l~NgvL~~~~~~~~~~ad~tlt~~~~~l~~ 80 (125)
T PF14864_consen 10 AMPPEMLFDYLAVRLDGEK----AADKDFTINFIFTDT-----GEQYTLELRNGVLNYRKGSPSPDADATLTLTRQTLLA 80 (125)
T ss_dssp CS-HHHHHHHHHHHB-HHH----HTT--EEEEEEETTT-----TEEEEEEEETTEEEEEET---TT-SEEEEE-HHHHHH
T ss_pred hCCHHHHHHHHHhhcCHHH----hCCCcEEEEEEEcCC-----CCeEEEEEECCEEEeecCCCCCCCCEEEEECHHHHHH
Confidence 6899999999999999965 458899999999875 689999999999875543 237899999999999999
Q ss_pred HHcCCCCHHHHHHccCeEEEeCHHHHhccCCccCCCC
Q 033240 85 VATGKMNPQIAFMRGLMKVKGSLSAAQKFTPDLFPKP 121 (124)
Q Consensus 85 l~~G~~~~~~A~~~Gklki~Gd~~~~~~l~~~lf~~~ 121 (124)
++.|+.++.+++.+|+++|+||...+.+|. .+|..|
T Consensus 81 l~~g~~~~~~~i~~g~i~v~Gd~~~~~~~~-~~ld~~ 116 (125)
T PF14864_consen 81 LLLGKTSLNEAIASGKIKVEGDPDALEEFL-GLLDKF 116 (125)
T ss_dssp HHTTSS-HHHHHHTTSCEEEE-CCHHHHHH-CTB---
T ss_pred HHhCCcchhHHhhcCCEEEECCHHHHHHHH-HHhcCC
Confidence 999999999999999999999999999998 777766
No 3
>PF02036 SCP2: SCP-2 sterol transfer family; InterPro: IPR003033 This domain is involved in binding sterols, and is found in proteins such as SCP2. This domain has a 3-layer alpha/beta/alpha fold, composed of alpha/beta(3)/(crossover)/beta/(alpha)/beta. The human sterol carrier protein 2 (SCP2) is a basic protein that is believed to participate in the intracellular transport of cholesterol and various other lipids []. The Unc-24 protein of Caenorhabditis elegans contains a domain similar to part of two ion channel regulators (the erythrocyte integral membrane protein stomatin and the C. elegans neuronal protein MEC-2) juxtaposed to a domain similar to nonspecific lipid transfer protein (nsLTP; also called sterol carrier protein 2) [].; GO: 0032934 sterol binding; PDB: 2KSH_A 2KSI_A 1PZ4_A 1C44_A 2CX7_B 1WFR_A 1QND_A 2C0L_B 1IKT_A 3BKR_A ....
Probab=99.81 E-value=1.6e-19 Score=116.92 Aligned_cols=87 Identities=31% Similarity=0.507 Sum_probs=74.9
Q ss_pred hhhhhccce-EEEEEeecCCCCCceeEEEEEeecCeEEeccCCCCCCcEEEEEeHHHHHHHHcCCCCHHHHHHccCeEEE
Q 033240 26 KAVVKKLGL-VYQINIAPKKMGFDEVTYTVDLKKGEVTKGSYEGGKPDATFTFKDDDFVKVATGKMNPQIAFMRGLMKVK 104 (124)
Q Consensus 26 ~~~~~~~~~-~~~f~i~~~~~g~~~~~~~l~l~~G~~~~g~~~~~~~d~tl~~~~~~~~~l~~G~~~~~~A~~~Gklki~ 104 (124)
++..+++++ +|+|++++. +..|+|++++|.|........+||++|+++.++|.+|+.|++++.+|+++|+++|+
T Consensus 14 ~~~l~~l~~~~i~~~i~~~-----~~~~~l~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~l~~g~~~~~~a~~~gklki~ 88 (102)
T PF02036_consen 14 PEALKGLDGKVIQFEITDP-----PGAWYLDIKDGKLRVGEGDDEEADVTITGSYEDLLKLLTGELDPMQAFMSGKLKIE 88 (102)
T ss_dssp HHHHHHHEE-EEEEEEECT-----TEEEEEEETTTTEEEEESSSSS-SEEEEEEHHHHHHHHTTSS-HHHHHHTTSSEEE
T ss_pred HHHHhhcCCEEEEEEEECC-----CcEEEEEEECCEEEEecCCCCCCcEEEEEeHHHHHHHHcCCCCchhhhhCCcEEEE
Confidence 456789999 999999976 45999999999877655433789999999999999999999999999999999999
Q ss_pred eCHHHHhccCCccC
Q 033240 105 GSLSAAQKFTPDLF 118 (124)
Q Consensus 105 Gd~~~~~~l~~~lf 118 (124)
||+..+++|. .+|
T Consensus 89 Gd~~~~~~~~-~l~ 101 (102)
T PF02036_consen 89 GDLMLAMRLQ-KLF 101 (102)
T ss_dssp ESHHHHHHHH-HHH
T ss_pred cCHHHHHHHH-Hhh
Confidence 9999999997 544
No 4
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.50 E-value=8.5e-14 Score=110.82 Aligned_cols=106 Identities=15% Similarity=0.240 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHhcccchhhhhhhccceEEEEEeecCCCCCceeEEEEEeecCeEEeccC-CCCCCcEEEEEeHHHHHH
Q 033240 6 QLKSDALLEQMKQHLSTDAGKAVVKKLGLVYQINIAPKKMGFDEVTYTVDLKKGEVTKGSY-EGGKPDATFTFKDDDFVK 84 (124)
Q Consensus 6 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~i~~~~~g~~~~~~~l~l~~G~~~~g~~-~~~~~d~tl~~~~~~~~~ 84 (124)
+|.++++||+|+.|||..|+ .+.+.+++|.+++. ++.|.++++|+++..... ..+.+|.|+++++.+|..
T Consensus 539 ~m~~em~fD~LavrLna~kA----~g~~l~inf~~~d~-----~e~f~l~L~n~~L~~~k~~q~e~~daT~ti~ra~~~~ 609 (655)
T COG2015 539 AMDTEMLFDFLAVRLNAAKA----AGKDLSINFNFPDG-----DENFLLTLRNSVLNYRKGLQSEAADATVTIDRADLLA 609 (655)
T ss_pred hcCHhHhhhhheeeecCccc----cCcceEEEEEccCC-----CceEEEEeecceeecccCCCCCCCCceEEEcHHHHHH
Confidence 46889999999999999764 47888899999986 689999999999876544 235679999999999999
Q ss_pred HHcCCCCHHHHHHccCeEEEeCHHHHhccCCccCCCC
Q 033240 85 VATGKMNPQIAFMRGLMKVKGSLSAAQKFTPDLFPKP 121 (124)
Q Consensus 85 l~~G~~~~~~A~~~Gklki~Gd~~~~~~l~~~lf~~~ 121 (124)
++.|+.+..+.+.+|++||+||..++.+|. .+|+.+
T Consensus 610 ~l~~~~s~~~~v~~~~~ki~Gn~~~l~~l~-~~ld~f 645 (655)
T COG2015 610 VLAGGTSMVDLVKSGKAKIEGNRAALEELL-GMLDNF 645 (655)
T ss_pred HHhCCcchHHHHhCCcceEecCHHHHHHHH-HHhcCc
Confidence 999999999999999999999999999887 555544
No 5
>COG3255 Putative sterol carrier protein [Lipid metabolism]
Probab=99.39 E-value=2e-12 Score=88.18 Aligned_cols=64 Identities=33% Similarity=0.497 Sum_probs=58.1
Q ss_pred eEEEEEeecCeEEeccCCCCCCcEEEEEeHHHHHHHHcCCCCHHHHHHccCeEEEeCHHHHhccC
Q 033240 50 VTYTVDLKKGEVTKGSYEGGKPDATFTFKDDDFVKVATGKMNPQIAFMRGLMKVKGSLSAAQKFT 114 (124)
Q Consensus 50 ~~~~l~l~~G~~~~g~~~~~~~d~tl~~~~~~~~~l~~G~~~~~~A~~~Gklki~Gd~~~~~~l~ 114 (124)
..+.+.+..+.+..+..++ .||+++.++.++|.+|++|+++|.+|||+||+|++|++..++++.
T Consensus 52 ~~~~~~i~~~~v~~~d~~~-~~d~~l~as~~~w~~i~~G~l~p~~AfmtGklkveg~~~~a~~l~ 115 (134)
T COG3255 52 CLGVEVIDGGTVSKADAPD-PPDFTLGASLDNWLDIITGKLNPTSAFMTGKLKVEGGMLSAMKLR 115 (134)
T ss_pred CceEEEEcCceEEeccCCC-CCCeEEEeCHHHHHHHHcCCcchhhHhhcCceEEeccccHHHHHH
Confidence 6788889888887777644 799999999999999999999999999999999999999988876
No 6
>COG3154 Putative lipid carrier protein [Lipid metabolism]
Probab=98.23 E-value=3.3e-06 Score=58.73 Aligned_cols=64 Identities=17% Similarity=0.322 Sum_probs=58.0
Q ss_pred eeEEEEEeecCeEEeccCCCCCCcEEEEEeHHHHHHHHcCCCCHHHHHHccCeEEEeCHHHHhccC
Q 033240 49 EVTYTVDLKKGEVTKGSYEGGKPDATFTFKDDDFVKVATGKMNPQIAFMRGLMKVKGSLSAAQKFT 114 (124)
Q Consensus 49 ~~~~~l~l~~G~~~~g~~~~~~~d~tl~~~~~~~~~l~~G~~~~~~A~~~Gklki~Gd~~~~~~l~ 114 (124)
+-.|.+...||.++.... ..+|++++.+..+|..|+.|+.+|...|++++++|+||+.+.+.+.
T Consensus 61 ~l~~~v~~~~g~l~v~~~--~~adv~~~g~l~dllaL~~gk~D~DtLFFqRrL~I~GDtElgLavk 124 (168)
T COG3154 61 PLRWFVEPVNGKLVVSRK--AQADVSFSGDLFDLLALAEGKQDPDTLFFQRRLVIEGDTELGLAVK 124 (168)
T ss_pred CeeEEEEecCCeEEEeec--cCcceEEecCHHHHHHHHcCCCCCcceEEeeeeecccchHHHHHHH
Confidence 689999999999876654 5799999999999999999999999999999999999998877654
No 7
>PF13530 SCP2_2: Sterol carrier protein domain; PDB: 3SXN_C 3N7Z_A 3RYO_B 3R1K_A 3UY5_A 2HV2_F 2I00_D 2OZG_A.
Probab=97.26 E-value=0.0023 Score=46.67 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=60.6
Q ss_pred ceEEEEEeecCCCCCceeEEEEEeecCeEEeccCCCCCCcEEEEEeHHHHHHHHcCCCCHHHHHHccCeEEEeCHHHHhc
Q 033240 33 GLVYQINIAPKKMGFDEVTYTVDLKKGEVTKGSYEGGKPDATFTFKDDDFVKVATGKMNPQIAFMRGLMKVKGSLSAAQK 112 (124)
Q Consensus 33 ~~~~~f~i~~~~~g~~~~~~~l~l~~G~~~~g~~~~~~~d~tl~~~~~~~~~l~~G~~~~~~A~~~Gklki~Gd~~~~~~ 112 (124)
+..+.|.|+|+-.-...+.|.|.+.+|..+..... ..+++++ +-.+|..++.|-.++..+...|+++ |+...+..
T Consensus 130 ~~~~~l~V~D~~~~~N~g~~~l~~~~g~~~v~~~~-~~~~~~l--~i~~Ls~l~~G~~~~~~l~~~g~i~--~~~~~l~~ 204 (218)
T PF13530_consen 130 DGELVLEVTDPLLPWNNGTFRLEVSDGKGSVERTE-EDPDLSL--DIGALSQLLFGYRSARELARAGRIE--GSDAALAE 204 (218)
T ss_dssp -EEEEEEEETSSSGGGSEEEEEEEETTEEEEEESS-SSCSEEE--EHHHHHHHHTTSS-HHHHHHTTSEE--ESHHHHHH
T ss_pred CceEEEEEECCCCCcCCcEEEEEEECCeEEEEEcC-CCceEEE--eHHHHHHHHHCCCCHHHHHHcCCCc--CCHHHHHH
Confidence 56688888875311237899999999976655442 4566555 5568999999999999999999995 66677777
Q ss_pred cCCccCCCC
Q 033240 113 FTPDLFPKP 121 (124)
Q Consensus 113 l~~~lf~~~ 121 (124)
|. .+|+..
T Consensus 205 l~-~lf~~~ 212 (218)
T PF13530_consen 205 LD-RLFPTR 212 (218)
T ss_dssp HH-HHCS-S
T ss_pred HH-HhcCCC
Confidence 77 888864
No 8
>PRK01346 hypothetical protein; Provisional
Probab=96.29 E-value=0.015 Score=45.92 Aligned_cols=83 Identities=11% Similarity=0.164 Sum_probs=60.1
Q ss_pred ceEEEEEeecCCCCCceeEEEEEeecCeEEeccCCCCCCcEEEEEeHHHHHHHHcCCCCHHHHHHccCeEEEeCHHHHhc
Q 033240 33 GLVYQINIAPKKMGFDEVTYTVDLKKGEVTKGSYEGGKPDATFTFKDDDFVKVATGKMNPQIAFMRGLMKVKGSLSAAQK 112 (124)
Q Consensus 33 ~~~~~f~i~~~~~g~~~~~~~l~l~~G~~~~g~~~~~~~d~tl~~~~~~~~~l~~G~~~~~~A~~~Gklki~Gd~~~~~~ 112 (124)
+..+.|.|+|+ .+...+.|.|.+.+|........ ..+| ++++-.+|-.+..|-.++.++...|+++.. +...+.+
T Consensus 320 ~~~~~l~V~D~-~~~N~G~~~l~~~~g~~~~~~~~-~~~~--~~l~i~~L~~l~~G~~s~~~l~~~g~i~~~-~~~a~~~ 394 (411)
T PRK01346 320 DGDVVLEVTDP-LGWAGGRFRLDVGDGGASCTPTD-AAAD--LALDVADLGSLYLGGHRASTLAAAGRVREL-DPGALAR 394 (411)
T ss_pred CCCEEEEEecC-CCCCCCeEEEEecCCCceeeecC-CCcc--eEEcHHHhhhhhcCCCCHHHHHHcCCeeec-CccHHHH
Confidence 35577888877 66667899999988753322221 3355 567778999999999999999999999864 4455556
Q ss_pred cCCccCCCC
Q 033240 113 FTPDLFPKP 121 (124)
Q Consensus 113 l~~~lf~~~ 121 (124)
|. .+|+.+
T Consensus 395 l~-~~f~~~ 402 (411)
T PRK01346 395 AD-AAFATD 402 (411)
T ss_pred HH-HHhCCC
Confidence 65 777644
No 9
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.88 E-value=0.24 Score=36.03 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=54.0
Q ss_pred ceEEEEEeecCCCCCceeEEEEEeecCeE---EeccCCCCCCcEEEEEeHHHHHHHHcCCCCHHHHHHccCeEEEeCHHH
Q 033240 33 GLVYQINIAPKKMGFDEVTYTVDLKKGEV---TKGSYEGGKPDATFTFKDDDFVKVATGKMNPQIAFMRGLMKVKGSLSA 109 (124)
Q Consensus 33 ~~~~~f~i~~~~~g~~~~~~~l~l~~G~~---~~g~~~~~~~d~tl~~~~~~~~~l~~G~~~~~~A~~~Gklki~Gd~~~ 109 (124)
+-|+.+++... .-..++.+....+ +..+ ..+|||++.....+-++..+. ++.+++-+|++.|+||...
T Consensus 34 gKVl~v~l~~~-----~~~L~~~~s~~~~dvls~~e---g~~Dc~v~~~~s~L~~L~~~~-~~~~~~~~g~l~veGD~q~ 104 (204)
T COG3165 34 GKVLAVDLAGF-----SLPLALVFSERQVDVLSAWE---GEADCTVRARASVLPKLRDRQ-QLGQLARSGELEVEGDIQL 104 (204)
T ss_pred CcEEEEEecCC-----CcceEEEEcCcccchhhccc---CCCCeeeeechhhhHHHHhhc-cchhhccCCceeecchHHH
Confidence 34678888654 3345566655433 2222 579999999999999888765 4566778999999999999
Q ss_pred HhccCC
Q 033240 110 AQKFTP 115 (124)
Q Consensus 110 ~~~l~~ 115 (124)
+..|..
T Consensus 105 ~q~l~~ 110 (204)
T COG3165 105 AQNLVA 110 (204)
T ss_pred HHHHHH
Confidence 988763
No 10
>PF07398 MDMPI_C: MDMPI C-terminal domain; InterPro: IPR010872 This domain is found at the C terminus of the mycothiol maleylpyruvate isomerase enzyme (MDMPI). The structure of this protein has been solved []. This domain appears weakly similar to Pfam:PF08608.
Probab=90.92 E-value=2.3 Score=26.12 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=32.9
Q ss_pred CCCcEEEEEeHHHHHHHHcCCCCHHHHHHccCeEEEeCHHHHh
Q 033240 69 GKPDATFTFKDDDFVKVATGKMNPQIAFMRGLMKVKGSLSAAQ 111 (124)
Q Consensus 69 ~~~d~tl~~~~~~~~~l~~G~~~~~~A~~~Gklki~Gd~~~~~ 111 (124)
..++++++.+..++...+.|+.++... +.+.||...+.
T Consensus 44 ~~~~~~V~G~a~~lll~l~GR~~~~~~-----l~~~GD~~l~~ 81 (82)
T PF07398_consen 44 DWPDVTVRGTASDLLLWLWGRLPPDDA-----LEVDGDAALLD 81 (82)
T ss_pred CCcceEEEeCHHHHHHHHhCCCCCccc-----eEeccChhhhc
Confidence 345699999999999999999999776 89999987654
No 11
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=51.95 E-value=17 Score=28.85 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=29.5
Q ss_pred CcEEEEEeHHH-HHHHH-cCCCCHHHHHHccCeEEEeCHHHHhcc
Q 033240 71 PDATFTFKDDD-FVKVA-TGKMNPQIAFMRGLMKVKGSLSAAQKF 113 (124)
Q Consensus 71 ~d~tl~~~~~~-~~~l~-~G~~~~~~A~~~Gklki~Gd~~~~~~l 113 (124)
+.++|++..+. |.+++ .|.+..-+|||.|.+.++ |+..++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~lg~~eaY~~g~~~~~-~l~~~~~~ 78 (383)
T PRK11705 35 RPWDIQVHNPRFFKRVLQEGSLGLGESYMDGWWDCD-RLDEFFSR 78 (383)
T ss_pred CCeEEEECCHHHHHHHhccCCccHHHHHHcCCeecC-CHHHHHHH
Confidence 33455554443 45554 569999999999999998 87777654
No 12
>TIGR03084 conserved hypothetical protein TIGR03084. This family, like Pfam family pfam07398, belongs to the larger set of probable enzymes modeled by TIGRFAMs family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized.
Probab=50.89 E-value=24 Score=26.14 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=30.9
Q ss_pred CCCcEEEEEeHHHHHHHHcCCCCHHHHHHccCeEEEeCHH
Q 033240 69 GKPDATFTFKDDDFVKVATGKMNPQIAFMRGLMKVKGSLS 108 (124)
Q Consensus 69 ~~~d~tl~~~~~~~~~l~~G~~~~~~A~~~Gklki~Gd~~ 108 (124)
..++++++.+..+|..++.|+.++.. +.+.|.||..
T Consensus 200 ~~~~~~V~G~a~dl~l~l~GR~~~~~----~~~~v~Gd~~ 235 (253)
T TIGR03084 200 EDAAQRVTGPAEDFCLLVTQRRHRDD----TDLVAVGADA 235 (253)
T ss_pred CCccceEeeCHHHHHHHHhcccChhh----ceeEEeCHHH
Confidence 45889999999999999999977554 3599999987
No 13
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=50.43 E-value=46 Score=23.59 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=23.4
Q ss_pred CCceeEEEEEeecCeEEeccCCCCCCcEEEEEeHHHH
Q 033240 46 GFDEVTYTVDLKKGEVTKGSYEGGKPDATFTFKDDDF 82 (124)
Q Consensus 46 g~~~~~~~l~l~~G~~~~g~~~~~~~d~tl~~~~~~~ 82 (124)
|-..++|.+.++||.++.-.-+....|+|++.....+
T Consensus 132 g~RS~R~a~vvengkV~~~nvE~~g~~~t~ssa~~il 168 (171)
T KOG0541|consen 132 GVRSRRYALVVENGKVTVVNVEEGGTDFTVSSAEDIL 168 (171)
T ss_pred ccccccEEEEEeCCeEEEEEeccCCCceEEecHHHHh
Confidence 4457889999999987643322134557777654433
No 14
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=48.93 E-value=30 Score=24.89 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHhcccchhhhhhhccceEEEE
Q 033240 4 STQLKSDALLEQMKQHLSTDAGKAVVKKLGLVYQI 38 (124)
Q Consensus 4 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f 38 (124)
-|.+.++++|+.+.+.+-..-..+..++|.+++-+
T Consensus 154 ~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyi 188 (204)
T KOG0180|consen 154 EPNMEPDELFETISQALLNAVDRDALSGWGAVVYI 188 (204)
T ss_pred CCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEE
Confidence 37899999999999886543334677888866533
No 15
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=44.41 E-value=76 Score=25.45 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=35.9
Q ss_pred CcEEEEEeHHHHHHHHcCCCCHHHHHHccCeEEEeCHHHHhccCCccCCC
Q 033240 71 PDATFTFKDDDFVKVATGKMNPQIAFMRGLMKVKGSLSAAQKFTPDLFPK 120 (124)
Q Consensus 71 ~d~tl~~~~~~~~~l~~G~~~~~~A~~~Gklki~Gd~~~~~~l~~~lf~~ 120 (124)
+...|.++-+++..+.+|--++.+.++.|||.++ + ..+.|+. .+|++
T Consensus 334 ~~~ei~idi~~L~~Ly~gyf~~~~L~~~gkl~~k-e-~~l~rl~-qifa~ 380 (389)
T COG4552 334 AAAEIEIDIDVLGSLYTGYFTASTLAAAGKLRTK-E-SQLLRLD-QIFAS 380 (389)
T ss_pred ccceeeeeHHHHHHHHhccccHHHHHHhcCcCCc-H-HHHHHHH-HHhcc
Confidence 4455667778899999999999999999999876 3 3344455 66664
No 16
>cd04757 Commd9 COMM_Domain containing protein 9. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=42.61 E-value=45 Score=21.95 Aligned_cols=38 Identities=8% Similarity=0.126 Sum_probs=25.9
Q ss_pred EEEEEeecCeEEeccCCCCCCcEEEEEeHHHHHHHHcCC
Q 033240 51 TYTVDLKKGEVTKGSYEGGKPDATFTFKDDDFVKVATGK 89 (124)
Q Consensus 51 ~~~l~l~~G~~~~g~~~~~~~d~tl~~~~~~~~~l~~G~ 89 (124)
...+.++++....|.-+ .--.++++++.+++..|+.|=
T Consensus 59 ll~lkv~~~~~~~~~~~-~~~~v~~ELsKe~l~tml~~L 96 (108)
T cd04757 59 LLQMKIQEAPSLCGLLP-PLSTLTMELSKETLDTMLDGL 96 (108)
T ss_pred EEEEEeecCccccccCC-CcceEEEEcCHHHHHHHHHHH
Confidence 34566666644333221 456799999999999998763
No 17
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=40.73 E-value=77 Score=23.08 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHhcccchhhhhhhccceEEEEEeecCCCCCceeEEEE
Q 033240 5 TQLKSDALLEQMKQHLSTDAGKAVVKKLGLVYQINIAPKKMGFDEVTYTV 54 (124)
Q Consensus 5 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~f~i~~~~~g~~~~~~~l 54 (124)
|.++.++-.+.+...|...+....-....|.+++.|.|. |..+-+|.|
T Consensus 137 Ptls~eQs~~kl~~lL~~gk~~~yy~q~~GAiRYVvad~--gekglTFAV 184 (200)
T PF07305_consen 137 PTLSPEQSQEKLQKLLTKGKGSRYYSQTEGAIRYVVADN--GEKGLTFAV 184 (200)
T ss_pred CcCCHHHHHHHHHHHHHcCCCCcceeeccCceEEEEecC--CCceeEEEe
Confidence 556666666666666654432222334455666666665 443444443
No 18
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=25.77 E-value=41 Score=29.61 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=38.9
Q ss_pred eEEEEEeecCeEEeccCCCCCCcEEEEEeHHHHHHHHcCCCCHHHHHHccCeEEEeCH
Q 033240 50 VTYTVDLKKGEVTKGSYEGGKPDATFTFKDDDFVKVATGKMNPQIAFMRGLMKVKGSL 107 (124)
Q Consensus 50 ~~~~l~l~~G~~~~g~~~~~~~d~tl~~~~~~~~~l~~G~~~~~~A~~~Gklki~Gd~ 107 (124)
...++++..|.+.. +++.|-||+-.+ |..+++|+.=.++.-|+|.+.+.|-.
T Consensus 788 ~~IHlH~PeGAtpK---DGPSAGvTmvTs---LlSLa~~kpVr~d~AMTGEvtLtGkV 839 (906)
T KOG2004|consen 788 SDIHLHVPEGATPK---DGPSAGVTMVTA---LLSLALGKPVRQDLAMTGEVTLTGKV 839 (906)
T ss_pred cceeeeccCCCCCC---cCCcccchhHHH---HHHHhhCCcchhhhHhhcccccccce
Confidence 45566666554321 224677888765 89999999999999999999999864
No 19
>PF12599 DUF3768: Protein of unknown function (DUF3768); InterPro: IPR022243 This family of proteins is found in bacteria. Proteins in this family are typically between 108 and 129 amino acids in length. There are two conserved sequence motifs: NDP and RVLT.
Probab=23.19 E-value=2e+02 Score=18.01 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=20.4
Q ss_pred eeEEEEEeecCeEEeccCCCCCCcEEEEE
Q 033240 49 EVTYTVDLKKGEVTKGSYEGGKPDATFTF 77 (124)
Q Consensus 49 ~~~~~l~l~~G~~~~g~~~~~~~d~tl~~ 77 (124)
.--|-|+.-+..+..|...+.+|.+|.++
T Consensus 48 ~vfWKIDyYD~d~~~gS~dPaDp~~T~RV 76 (84)
T PF12599_consen 48 KVFWKIDYYDPDLEFGSPDPADPAVTTRV 76 (84)
T ss_pred EEEEEEEEEcCccccCCCCCCCcceeEEE
Confidence 56688999888888887644566666543
No 20
>COG1471 RPS4A Ribosomal protein S4E [Translation, ribosomal structure and biogenesis]
Probab=22.85 E-value=1.9e+02 Score=21.74 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=41.4
Q ss_pred eEEEEEeecCeEE----eccCCCCCCcEEEEEeHHHHHHHHcCCCCHHHHHHccCeEEEeCHHHHhcc
Q 033240 50 VTYTVDLKKGEVT----KGSYEGGKPDATFTFKDDDFVKVATGKMNPQIAFMRGLMKVKGSLSAAQKF 113 (124)
Q Consensus 50 ~~~~l~l~~G~~~----~g~~~~~~~d~tl~~~~~~~~~l~~G~~~~~~A~~~Gklki~Gd~~~~~~l 113 (124)
.+|.|.=+.+... .|++. ..-.+.+-+=-.|+.+.+.-.--....+++|+++|+|...+=.+|
T Consensus 15 ~~w~i~rK~~kw~~~P~pGPH~-~~~slPL~~iiRd~LkyAd~~REa~~Ii~~g~v~VDG~vRkd~kf 81 (241)
T COG1471 15 KSWPIPRKTGKWAVRPSPGPHK-AEESLPLLVIIRDYLKYADNAREARKILSEGKVLVDGKVRKDYKF 81 (241)
T ss_pred ceEEeccccceEeccCCCCCCc-ccccccEEeeehhHHHhccchHHHHHHHhcCcEEECCEEeccccC
Confidence 4555555555433 23321 123344544556789998888888999999999999987665554
No 21
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=22.32 E-value=91 Score=15.68 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=12.4
Q ss_pred ccceEEEEEeecCCCCCceeEEEE
Q 033240 31 KLGLVYQINIAPKKMGFDEVTYTV 54 (124)
Q Consensus 31 ~~~~~~~f~i~~~~~g~~~~~~~l 54 (124)
+.++.||+.|.|. | .+++.+
T Consensus 9 DTDgn~qITIeD~--G--PKv~~l 28 (30)
T PF07492_consen 9 DTDGNFQITIEDT--G--PKVLSL 28 (30)
T ss_pred ccCCCcEEEEecC--C--CeEEec
Confidence 4556688888876 3 555443
No 22
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=21.12 E-value=1.6e+02 Score=16.10 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=17.6
Q ss_pred eeEEEEEeecCeEEeccCCCCCCcEEEEEeHHH
Q 033240 49 EVTYTVDLKKGEVTKGSYEGGKPDATFTFKDDD 81 (124)
Q Consensus 49 ~~~~~l~l~~G~~~~g~~~~~~~d~tl~~~~~~ 81 (124)
+..+.|.+....++.....++ +.++|.+..+.
T Consensus 18 g~~l~v~i~~~~v~v~~~~g~-~~l~i~v~g~~ 49 (54)
T PF03633_consen 18 GHWLEVEITHEKVTVTLLSGD-APLTIKVYGEE 49 (54)
T ss_dssp TEEEEEEEETTEEEEEEEESS---EEEEETT--
T ss_pred CEEEEEEEECCEEEEEEccCC-ccEEEEECCCc
Confidence 466788888877654432213 67777776543
No 23
>PF08638 Med14: Mediator complex subunit MED14; InterPro: IPR013947 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Saccharomyces cerevisiae (Baker's yeast) RGR1 mediator complex subunit affects chromatin structure, transcriptional regulation of diverse genes, and sporulation. It is required for glucose repression, HO repression, RME1 repression and sporulation [, ]. This subunit is also found in higher eukaryotes and MED14 is the agreed unified nomenclature for this subunit []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.09 E-value=74 Score=22.87 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=15.0
Q ss_pred EEEeecCeEEeccCCCCCCcEEEEEeHH
Q 033240 53 TVDLKKGEVTKGSYEGGKPDATFTFKDD 80 (124)
Q Consensus 53 ~l~l~~G~~~~g~~~~~~~d~tl~~~~~ 80 (124)
...++||.++...+ ..=.+.+++..+
T Consensus 169 ~~~I~dGrv~f~V~--~EFev~LTl~~~ 194 (195)
T PF08638_consen 169 NYSIKDGRVTFTVP--GEFEVDLTLGDE 194 (195)
T ss_pred eEEEECCEEEEEEC--CeEEEEEEecCC
Confidence 56678888776544 334455554443
No 24
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=20.69 E-value=35 Score=22.15 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=12.9
Q ss_pred CCCCCCCCHHHHHHHHHHhcc
Q 033240 1 MADSTQLKSDALLEQMKQHLS 21 (124)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~l~ 21 (124)
|.+|+.| +.++|++|+.|=+
T Consensus 56 M~dSkeF-A~eLFdALaRrr~ 75 (100)
T PF08414_consen 56 MKDSKEF-AGELFDALARRRG 75 (100)
T ss_dssp --S-HHH-HHHHHHHHHHHTT
T ss_pred CcccHHH-HHHHHHHHHHhcC
Confidence 4556666 7789999998743
No 25
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.08 E-value=3.2e+02 Score=19.30 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=14.7
Q ss_pred CCceeEEEEEeecCeEEec
Q 033240 46 GFDEVTYTVDLKKGEVTKG 64 (124)
Q Consensus 46 g~~~~~~~l~l~~G~~~~g 64 (124)
|-...+|.+.++||+++.-
T Consensus 126 G~RS~RYsmvV~nGvV~~~ 144 (165)
T COG0678 126 GVRSWRYSMVVENGVVEKL 144 (165)
T ss_pred ceeeeeEEEEEeCCeEEEE
Confidence 3456789999999987643
Done!