Query 033241
Match_columns 124
No_of_seqs 115 out of 600
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 19:07:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_C Protein (prefoldin); ar 100.0 7.4E-31 2.5E-35 183.5 15.7 109 13-122 2-110 (133)
2 2zdi_C Prefoldin subunit alpha 100.0 8.9E-29 3E-33 176.7 13.6 110 11-122 8-120 (151)
3 2zqm_A Prefoldin beta subunit 98.9 5.6E-08 1.9E-12 65.4 13.1 86 13-122 7-92 (117)
4 1fxk_A Prefoldin; archaeal pro 98.8 3.5E-07 1.2E-11 60.6 13.1 85 14-122 3-87 (107)
5 1fxk_C Protein (prefoldin); ar 96.6 0.011 3.9E-07 40.0 7.8 94 15-121 11-116 (133)
6 2zdi_C Prefoldin subunit alpha 95.9 0.0068 2.3E-07 42.3 3.7 93 16-121 20-126 (151)
7 2l5g_B Putative uncharacterize 93.3 0.24 8.2E-06 27.4 4.9 37 12-48 2-38 (42)
8 1gmj_A ATPase inhibitor; coile 89.6 1.8 6E-05 27.5 6.7 41 14-54 39-79 (84)
9 3rrk_A V-type ATPase 116 kDa s 84.3 12 0.00041 28.6 13.3 110 13-122 93-248 (357)
10 3nmd_A CGMP dependent protein 83.2 5.5 0.00019 24.4 6.3 42 13-54 20-61 (72)
11 3aei_A Prefoldin beta subunit 79.3 9.3 0.00032 24.0 10.7 32 90-121 51-82 (99)
12 2w6a_A ARF GTPase-activating p 72.4 12 0.00043 22.0 5.7 25 16-40 31-55 (63)
13 2oa5_A Hypothetical protein BQ 70.2 3.6 0.00012 27.3 2.9 32 1-36 1-32 (110)
14 2akf_A Coronin-1A; coiled coil 69.8 9.1 0.00031 19.4 5.0 27 23-49 3-29 (32)
15 1q08_A Zn(II)-responsive regul 69.0 17 0.00059 22.3 7.0 45 11-55 16-68 (99)
16 3fx7_A Putative uncharacterize 65.8 15 0.00052 23.6 5.2 35 10-44 4-38 (94)
17 3m9b_A Proteasome-associated A 65.1 25 0.00085 26.5 7.0 69 16-97 58-127 (251)
18 2yy0_A C-MYC-binding protein; 64.9 7.1 0.00024 22.3 3.1 31 11-41 18-48 (53)
19 2lme_A Adhesin YADA; trimeric 64.8 18 0.00063 23.2 5.6 48 26-73 16-63 (105)
20 3f1i_H Hepatocyte growth facto 63.5 25 0.00087 22.6 5.9 28 29-56 58-85 (98)
21 4ioe_A Secreted protein ESXB; 61.9 22 0.00076 21.3 5.4 35 11-45 8-42 (93)
22 3gwk_C SAG1039, putative uncha 60.7 25 0.00087 21.3 6.4 36 11-46 7-42 (98)
23 3gp4_A Transcriptional regulat 58.7 38 0.0013 22.6 6.8 23 24-46 93-115 (142)
24 2jo8_A Serine/threonine-protei 58.6 22 0.00076 20.2 4.4 31 9-39 7-41 (51)
25 3jsv_C NF-kappa-B essential mo 58.4 33 0.0011 21.9 6.6 45 12-56 2-46 (94)
26 3gpv_A Transcriptional regulat 57.9 40 0.0014 22.6 6.8 29 26-54 102-130 (148)
27 2v4h_A NF-kappa-B essential mo 56.5 40 0.0014 22.2 6.5 51 7-57 19-69 (110)
28 2nrj_A HBL B protein; enteroto 53.8 48 0.0016 25.7 7.2 14 85-98 212-225 (346)
29 1q08_A Zn(II)-responsive regul 52.0 19 0.00065 22.1 3.9 27 97-123 36-62 (99)
30 3kin_B Kinesin heavy chain; mo 51.9 38 0.0013 22.1 5.5 36 10-45 80-115 (117)
31 2yy0_A C-MYC-binding protein; 51.8 31 0.0011 19.5 4.6 26 22-47 22-47 (53)
32 2gr7_A Adhesin; trimeric autot 51.4 52 0.0018 22.0 7.3 66 24-89 37-110 (129)
33 2vs0_A Virulence factor ESXA; 51.2 37 0.0013 20.2 6.4 36 11-46 5-40 (97)
34 3zbh_A ESXA; unknown function, 49.4 40 0.0014 20.2 6.3 35 12-46 9-43 (99)
35 2wt7_A Proto-oncogene protein 49.1 37 0.0013 19.6 6.5 29 17-45 28-56 (63)
36 1l8d_A DNA double-strand break 48.1 49 0.0017 20.8 6.5 44 11-54 56-99 (112)
37 4i0x_B ESAT-6-like protein MAB 46.7 50 0.0017 20.5 5.3 34 13-46 12-45 (103)
38 3ibp_A Chromosome partition pr 46.7 70 0.0024 24.6 6.9 95 12-121 10-104 (302)
39 2wuj_A Septum site-determining 46.4 37 0.0013 19.3 4.2 34 13-46 21-54 (57)
40 1go4_E MAD1 (mitotic arrest de 46.3 32 0.0011 22.2 4.3 40 77-121 50-89 (100)
41 3gp4_A Transcriptional regulat 45.8 64 0.0022 21.5 6.4 31 24-54 86-116 (142)
42 2wg5_A General control protein 45.7 46 0.0016 21.4 5.1 10 24-33 12-21 (109)
43 4e61_A Protein BIM1; EB1-like 45.5 61 0.0021 21.1 5.8 32 15-46 7-38 (106)
44 1l8d_A DNA double-strand break 44.9 56 0.0019 20.5 6.7 40 14-53 5-44 (112)
45 1aq5_A Matrilin-1, CMP, cartil 44.0 41 0.0014 18.8 5.2 32 15-46 12-43 (47)
46 2xdj_A Uncharacterized protein 43.3 57 0.0019 20.2 5.5 19 26-44 27-45 (83)
47 4i0x_A ESAT-6-like protein MAB 42.9 37 0.0013 20.7 4.1 28 14-41 2-29 (94)
48 1r8d_A Transcription activator 42.2 46 0.0016 20.9 4.6 44 12-55 60-104 (109)
49 3gpv_A Transcriptional regulat 41.4 72 0.0025 21.3 5.8 45 11-55 73-124 (148)
50 3oa7_A Head morphogenesis prot 41.2 1E+02 0.0034 22.4 6.7 25 20-44 31-55 (206)
51 4e61_A Protein BIM1; EB1-like 39.8 73 0.0025 20.7 5.2 28 26-53 11-38 (106)
52 1q06_A Transcriptional regulat 39.1 38 0.0013 22.3 4.0 27 97-123 76-102 (135)
53 3efg_A Protein SLYX homolog; x 39.1 65 0.0022 19.6 5.7 42 11-52 6-47 (78)
54 1q06_A Transcriptional regulat 39.1 80 0.0027 20.7 7.0 46 11-56 57-109 (135)
55 1nkp_B MAX protein, MYC proto- 38.0 52 0.0018 19.8 4.2 28 20-47 48-75 (83)
56 2wvr_A Geminin; DNA replicatio 37.8 1.2E+02 0.0039 22.1 6.5 36 21-56 124-159 (209)
57 1ik9_A DNA repair protein XRCC 37.5 1.1E+02 0.0039 22.0 6.7 34 21-54 141-174 (213)
58 2zhg_A Redox-sensitive transcr 36.9 81 0.0028 21.2 5.5 45 12-56 68-120 (154)
59 2e5q_A PHD finger protein 19; 36.9 45 0.0015 19.7 3.5 23 60-82 10-32 (63)
60 1lwu_C Fibrinogen gamma chain; 36.5 1.2E+02 0.004 23.4 6.9 32 23-54 23-54 (323)
61 2vz4_A Tipal, HTH-type transcr 36.4 38 0.0013 21.3 3.5 44 12-55 59-103 (108)
62 1gd2_E Transcription factor PA 35.8 49 0.0017 19.8 3.7 11 28-38 31-41 (70)
63 4hcz_A PHD finger protein 1; p 35.7 22 0.00077 20.8 2.0 32 60-91 6-41 (58)
64 2w83_C C-JUN-amino-terminal ki 35.5 66 0.0022 19.8 4.2 34 21-54 32-65 (77)
65 4dci_A Uncharacterized protein 35.2 44 0.0015 23.1 3.8 30 16-45 74-103 (150)
66 1nlw_A MAD protein, MAX dimeri 34.7 77 0.0026 19.2 4.6 9 26-34 61-69 (80)
67 3nr7_A DNA-binding protein H-N 34.6 83 0.0028 19.5 7.1 39 11-49 23-61 (86)
68 1t2k_D Cyclic-AMP-dependent tr 34.4 65 0.0022 18.3 6.2 32 22-53 25-56 (61)
69 1r8e_A Multidrug-efflux transp 34.4 75 0.0026 22.8 5.3 32 23-54 83-114 (278)
70 2zqm_A Prefoldin beta subunit 34.1 87 0.003 19.6 6.7 37 15-51 73-109 (117)
71 3qao_A LMO0526 protein, MERR-l 33.8 1.4E+02 0.0047 21.8 7.0 32 23-54 80-111 (249)
72 4dzo_A Mitotic spindle assembl 33.5 1E+02 0.0035 20.3 5.8 42 15-56 4-45 (123)
73 1ytz_T Troponin T; muscle, THI 33.3 99 0.0034 20.0 6.6 51 5-55 35-89 (107)
74 3na7_A HP0958; flagellar bioge 32.5 1.3E+02 0.0044 21.8 6.4 20 100-119 97-116 (256)
75 1fxk_A Prefoldin; archaeal pro 32.2 90 0.0031 19.2 5.9 34 15-48 68-101 (107)
76 1lrz_A FEMA, factor essential 32.0 92 0.0032 24.2 5.7 20 66-89 311-330 (426)
77 3iv1_A Tumor susceptibility ge 31.5 92 0.0032 19.1 5.9 32 21-52 13-44 (78)
78 3emo_C HIA (adhesin); transmem 31.3 1.3E+02 0.0045 20.8 8.4 75 12-90 55-144 (162)
79 1rtm_1 Mannose-binding protein 31.1 54 0.0018 21.2 3.7 24 24-47 2-25 (149)
80 2do1_A Nuclear protein HCC-1; 30.9 61 0.0021 18.5 3.4 24 2-25 3-26 (55)
81 1wlq_A Geminin; coiled-coil; 2 30.6 1E+02 0.0034 19.2 6.3 24 26-49 45-68 (83)
82 3jtz_A Integrase; four strande 30.4 72 0.0025 19.6 4.0 27 87-113 50-76 (88)
83 2pnv_A Small conductance calci 30.3 70 0.0024 17.4 4.8 18 30-47 20-37 (43)
84 1p9i_A Cortexillin I/GCN4 hybr 30.2 55 0.0019 16.1 2.9 23 16-38 3-25 (31)
85 1r8e_A Multidrug-efflux transp 29.9 1.3E+02 0.0046 21.4 6.0 33 17-49 84-116 (278)
86 1zke_A Hypothetical protein HP 29.3 48 0.0016 20.5 2.8 20 37-56 56-75 (83)
87 3viq_B Mating-type switching p 29.1 1.1E+02 0.0037 19.1 4.6 24 15-38 4-27 (85)
88 3err_A Fusion protein of micro 28.9 1.6E+02 0.0055 24.2 6.8 46 12-57 25-74 (536)
89 4ekx_C 14L protein; binding pr 28.6 86 0.0029 20.6 4.3 35 61-95 6-46 (116)
90 1deb_A APC protein, adenomatou 28.6 85 0.0029 17.8 6.9 33 21-53 19-51 (54)
91 1hjb_A Ccaat/enhancer binding 28.5 1.1E+02 0.0037 19.0 5.6 30 17-46 41-70 (87)
92 3zqs_A E3 ubiquitin-protein li 28.5 1E+02 0.0035 21.9 4.9 22 60-81 114-135 (186)
93 1ci6_A Transcription factor AT 28.4 90 0.0031 18.0 6.2 20 21-40 32-51 (63)
94 1jnm_A Proto-oncogene C-JUN; B 27.1 92 0.0031 17.7 5.0 32 21-52 24-55 (62)
95 1nkp_A C-MYC, MYC proto-oncoge 27.0 1.1E+02 0.0039 18.7 5.5 26 18-43 58-83 (88)
96 3fav_B ESAT-6, 6 kDa early sec 26.9 86 0.0029 18.6 3.9 27 14-40 7-33 (94)
97 2vkl_A RV0948C/MT0975; helical 26.7 1.2E+02 0.0039 18.7 6.2 39 9-47 9-47 (90)
98 2cly_B ATP synthase D chain, m 26.3 73 0.0025 22.0 3.8 28 96-123 98-125 (160)
99 3q0x_A Centriole protein; cent 26.3 1.6E+02 0.0056 21.5 5.8 31 17-47 183-213 (228)
100 3tso_C RAB11 family-interactin 26.2 1.2E+02 0.004 18.6 6.0 38 8-45 10-47 (75)
101 3hh0_A Transcriptional regulat 26.0 1.4E+02 0.0048 19.8 5.2 43 12-54 62-108 (146)
102 1j1d_B Troponin T, TNT; THIN f 26.0 1.4E+02 0.0047 19.3 5.4 50 6-55 36-89 (106)
103 1f8p_A Neuropeptide Y (PNPY); 25.9 50 0.0017 17.5 2.2 24 10-33 10-33 (37)
104 2l60_A Peptide YY; GPCR ligand 25.8 86 0.0029 16.9 3.2 22 11-32 15-36 (41)
105 2p2u_A HOST-nuclease inhibitor 25.6 1.7E+02 0.0057 20.2 5.8 33 16-48 42-74 (171)
106 1vp7_A Exodeoxyribonuclease VI 25.6 1.4E+02 0.0046 19.2 6.3 36 10-45 49-84 (100)
107 2bf9_A Pancreatic hormone; tur 25.6 81 0.0028 16.5 3.2 23 10-32 10-32 (36)
108 2wt7_B Transcription factor MA 25.2 1.3E+02 0.0045 18.9 5.9 31 23-53 52-82 (90)
109 2wvr_A Geminin; DNA replicatio 25.1 2E+02 0.0068 20.9 6.7 34 23-56 119-152 (209)
110 2z1c_A Hydrogenase expression/ 25.0 78 0.0027 19.1 3.3 27 79-106 37-63 (75)
111 1jcd_A Major outer membrane li 24.8 1E+02 0.0035 17.4 5.5 25 15-39 7-31 (52)
112 1pd7_B MAD1; PAH2, SIN3, eukar 24.8 70 0.0024 15.5 2.4 14 99-112 9-22 (26)
113 1tmo_A TMAO reductase, trimeth 24.4 78 0.0027 26.9 4.3 26 89-114 110-135 (829)
114 1tjl_A DNAK suppressor protein 24.3 1.7E+02 0.0058 19.8 5.8 30 10-39 30-59 (151)
115 2zet_C Melanophilin; complex, 24.3 1.7E+02 0.0059 19.9 6.8 41 5-45 10-53 (153)
116 2gr8_A Adhesin; trimeric autot 24.1 72 0.0025 20.3 3.2 62 28-89 11-80 (99)
117 3uul_A Utrophin; spectrin repe 24.1 99 0.0034 18.8 3.9 31 15-45 39-69 (118)
118 1zme_C Proline utilization tra 24.1 68 0.0023 18.1 2.8 15 24-38 49-63 (70)
119 1eu1_A Dimethyl sulfoxide redu 24.0 74 0.0025 26.8 4.1 27 89-115 77-103 (780)
120 3tee_A Flagella basal BODY P-r 24.0 1.1E+02 0.0038 22.0 4.6 37 55-91 165-201 (219)
121 1v5r_A Growth-arrest-specific 23.8 1.2E+02 0.0042 19.4 4.2 20 74-93 46-65 (97)
122 4dzn_A Coiled-coil peptide CC- 23.6 80 0.0027 15.8 4.6 18 26-43 9-26 (33)
123 3s9g_A Protein hexim1; cyclin 23.6 1.5E+02 0.0053 19.0 6.3 32 9-40 27-58 (104)
124 2zkr_v 60S ribosomal protein L 23.5 43 0.0015 22.4 2.0 28 7-34 7-34 (123)
125 3lay_A Zinc resistance-associa 23.4 1E+02 0.0035 21.6 4.1 33 7-39 66-98 (175)
126 2e7z_A Acetylene hydratase AHY 23.3 77 0.0026 26.4 4.0 26 89-114 71-96 (727)
127 3ju0_A Phage integrase; four s 23.3 1.5E+02 0.0051 18.8 5.2 28 87-114 50-77 (108)
128 2rkh_A Putative APHA-like tran 23.3 95 0.0033 21.7 4.0 30 94-123 116-145 (180)
129 2vpz_A Thiosulfate reductase; 23.2 78 0.0027 26.6 4.1 25 90-114 109-133 (765)
130 2zhg_A Redox-sensitive transcr 23.2 1E+02 0.0034 20.8 4.0 27 97-123 87-113 (154)
131 1u2m_A Histone-like protein HL 22.7 3.2 0.00011 27.8 -3.9 31 47-78 101-131 (143)
132 3u5e_h 60S ribosomal protein L 22.7 51 0.0017 21.9 2.2 33 1-33 1-33 (120)
133 1uii_A Geminin; human, DNA rep 22.6 1.5E+02 0.005 18.5 6.7 27 26-52 53-79 (83)
134 3ghg_A Fibrinogen alpha chain; 22.5 2.4E+02 0.0083 23.5 6.6 18 29-46 134-151 (562)
135 1vq8_V 50S ribosomal protein L 22.5 32 0.0011 20.6 1.1 26 8-33 8-33 (71)
136 2j5u_A MREC protein; bacterial 22.4 73 0.0025 23.4 3.4 64 17-90 24-93 (255)
137 3h43_A Proteasome-activating n 22.2 1E+02 0.0035 18.8 3.5 18 80-97 29-48 (85)
138 2eqj_A Metal-response element- 22.2 52 0.0018 19.6 2.0 23 60-82 16-38 (66)
139 2e5p_A Protein PHF1, PHD finge 22.0 96 0.0033 18.6 3.2 33 59-91 11-47 (68)
140 2zxx_A Geminin; coiled-coil, c 21.9 1.5E+02 0.005 18.2 5.7 24 24-47 39-62 (79)
141 3kpe_A Fusion glycoprotein F0; 21.8 1.2E+02 0.0041 17.1 4.4 26 24-49 2-27 (51)
142 3d3r_A Hydrogenase assembly ch 21.7 53 0.0018 21.3 2.1 44 62-106 38-87 (103)
143 2zjr_V 50S ribosomal protein L 21.6 1.1E+02 0.0038 17.9 3.5 26 8-33 5-30 (67)
144 1dh3_A Transcription factor CR 21.6 1.2E+02 0.004 17.0 4.5 25 28-52 24-48 (55)
145 2nw5_A Methionine aminopeptida 21.2 1.7E+02 0.0057 22.6 5.3 41 77-117 122-170 (360)
146 2l5g_A GPS2 protein, G protein 21.1 1.1E+02 0.0036 16.2 3.1 10 29-38 18-27 (38)
147 3ls0_A SLL1638 protein, PSBQ; 20.7 2E+02 0.0069 19.3 5.1 38 5-43 10-48 (133)
148 1zxa_A CGMP-dependent protein 20.6 1.4E+02 0.0047 17.7 3.7 34 14-47 13-46 (67)
149 1buu_A Protein (mannose-bindin 20.4 1.4E+02 0.0048 19.7 4.3 21 27-47 24-44 (168)
150 2z5i_A TM, general control pro 20.4 1E+02 0.0036 17.2 3.0 19 103-121 8-26 (52)
151 1fzc_C Fibrin; blood coagulati 20.3 1E+02 0.0035 23.7 3.9 19 26-44 25-43 (319)
152 3k1l_B Fancl; UBC, ring, RWD, 20.2 2.2E+02 0.0075 22.6 5.7 19 60-78 218-236 (381)
No 1
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=99.97 E-value=7.4e-31 Score=183.54 Aligned_cols=109 Identities=23% Similarity=0.418 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 033241 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY 92 (124)
Q Consensus 13 ~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~~e~lVplg~~~yv~a~I~~~~~VlV~lG~g~ 92 (124)
.+++|...+++++.+++.+++++..|+..+++|..++++|+.|++ +.+.+++||||+|+|+||+|+++++|+||||+||
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~-~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~ 80 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG-KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGV 80 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCE
Confidence 479999999999999999999999999999999999999999986 5689999999999999999999999999999999
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033241 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEV 122 (124)
Q Consensus 93 ~vE~~~~eA~~~l~~r~~~l~~~i~~l~~~ 122 (124)
|||+|.++|++|+++|++.++++++++++.
T Consensus 81 ~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~ 110 (133)
T 1fxk_C 81 AIKKNFEDAMESIKSQKNELESTLQKMGEN 110 (133)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998764
No 2
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=99.96 E-value=8.9e-29 Score=176.65 Aligned_cols=110 Identities=18% Similarity=0.397 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEE
Q 033241 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNI---RTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVD 87 (124)
Q Consensus 11 ~l~le~L~~~~~~l~~ei~~l~~~~~~L---~~~~~~~~~~~~~l~~L~~~~~~~e~lVplg~~~yv~a~I~~~~~VlV~ 87 (124)
+-.+++|...+++++.+++.+++++..| +..++++..+++.|+.++. ++.+++||||+|+|+||+|+++++|+||
T Consensus 8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~--~~~~ilvplg~~~yv~g~i~~~~~V~v~ 85 (151)
T 2zdi_C 8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE--EKPEILVPIGAGSFLKGVIVDKNNAIVS 85 (151)
T ss_dssp TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--SSCEEEEECSSSCEEEEECSCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCceEEEEcCCCeEEEEEECCCCEEEEE
Confidence 4458899999999999999999999999 7778888888888887763 5799999999999999999999999999
Q ss_pred ccCceeeecCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033241 88 IGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEV 122 (124)
Q Consensus 88 lG~g~~vE~~~~eA~~~l~~r~~~l~~~i~~l~~~ 122 (124)
||+|||||+|.++|++|+++|++.++++++++++.
T Consensus 86 lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~ 120 (151)
T 2zdi_C 86 VGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGA 120 (151)
T ss_dssp EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998763
No 3
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=98.91 E-value=5.6e-08 Score=65.36 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCce
Q 033241 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGY 92 (124)
Q Consensus 13 ~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~~e~lVplg~~~yv~a~I~~~~~VlV~lG~g~ 92 (124)
.++++....+++.++++.+..++..+.....++..+++.|+.+++ +..++.++| |+
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~---d~~vy~~iG---------------------~v 62 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPD---DAVVYKTVG---------------------TL 62 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT---TCCEEEEET---------------------TE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CcHhHHHhh---------------------HH
Confidence 456777778899999999999999999999999999999999863 345666666 99
Q ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033241 93 FVEKTMDEGKDYCERKINLLKSNFDQLIEV 122 (124)
Q Consensus 93 ~vE~~~~eA~~~l~~r~~~l~~~i~~l~~~ 122 (124)
||+.|.++|...+++|++.++..++.+.+.
T Consensus 63 fv~~~~~ea~~~L~~~~e~ie~~i~~le~~ 92 (117)
T 2zqm_A 63 IVKTTKDKAVAELKEKIETLEVRLNALERQ 92 (117)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988754
No 4
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=98.77 E-value=3.5e-07 Score=60.57 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCcee
Q 033241 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTGYF 93 (124)
Q Consensus 14 le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~~e~lVplg~~~yv~a~I~~~~~VlV~lG~g~~ 93 (124)
++++....++++++++.+..++..+.....++..+.+.|+.+++ +..++.++| ++|
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~---d~~vy~~iG---------------------~vf 58 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAAD---DAEVYKSSG---------------------NIL 58 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT---TCCEEEEET---------------------TEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CchHHHHHh---------------------HHH
Confidence 56777888899999999999999999999999999999999963 345666666 999
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033241 94 VEKTMDEGKDYCERKINLLKSNFDQLIEV 122 (124)
Q Consensus 94 vE~~~~eA~~~l~~r~~~l~~~i~~l~~~ 122 (124)
|+.|.++|...+++|++.++..++.+.+.
T Consensus 59 v~~~~~e~~~~L~~~~e~i~~~i~~le~~ 87 (107)
T 1fxk_A 59 IRVAKDELTEELQEKLETLQLREKTIERQ 87 (107)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888753
No 5
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=96.59 E-value=0.011 Score=40.03 Aligned_cols=94 Identities=10% Similarity=0.209 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccC----------CCCCceEEEecCCceeEeEEEcCCC
Q 033241 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST--ALHDLSL----------RPQGAKMLVPLTASLYVPGTLDDAR 82 (124)
Q Consensus 15 e~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~--~l~~L~~----------~~~~~e~lVplg~~~yv~a~I~~~~ 82 (124)
.++....+.+.+.++.+...+..+...+..+....+ ..+.+-| -....+++|+||+|+|+.-.+.+..
T Consensus 11 q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~ 90 (133)
T 1fxk_C 11 NIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAM 90 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHH
Confidence 455556667777888888888888877777766542 2222211 0245679999999999999988743
Q ss_pred eEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 83 KVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121 (124)
Q Consensus 83 ~VlV~lG~g~~vE~~~~eA~~~l~~r~~~l~~~i~~l~~ 121 (124)
. -+++=+++++++++.+++.+..+++
T Consensus 91 ~-------------~l~~r~~~l~~~~~~l~~~l~~l~~ 116 (133)
T 1fxk_C 91 E-------------SIKSQKNELESTLQKMGENLRAITD 116 (133)
T ss_dssp H-------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2344455555555555555555443
No 6
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=95.91 E-value=0.0068 Score=42.25 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHhhccCC----------CCCceEEEecCCceeEeEEEcCC
Q 033241 16 QLKAIKEQTDLEVNLL---QDSLNNIRTATSRLESAS-TALHDLSLR----------PQGAKMLVPLTASLYVPGTLDDA 81 (124)
Q Consensus 16 ~L~~~~~~l~~ei~~l---~~~~~~L~~~~~~~~~~~-~~l~~L~~~----------~~~~e~lVplg~~~yv~a~I~~~ 81 (124)
++....+.+.+.++.| ...+..+..+++.+.... +..+.+-+- ....+++|+||+|+||.-.+.+.
T Consensus 20 ql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA 99 (151)
T 2zdi_C 20 VLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEA 99 (151)
T ss_dssp HHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEEecHHHH
Confidence 3334455666666777 777777777766655443 233333321 23467889999999988887764
Q ss_pred CeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 82 RKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121 (124)
Q Consensus 82 ~~VlV~lG~g~~vE~~~~eA~~~l~~r~~~l~~~i~~l~~ 121 (124)
. .-+++=+++++++++.+++.+..+++
T Consensus 100 ~-------------~~l~~ri~~l~~~l~~l~~~l~~l~~ 126 (151)
T 2zdi_C 100 I-------------SFLEKRLKEYDEAIKKTQGALAELEK 126 (151)
T ss_dssp H-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 23445555666666666655555543
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=93.25 E-value=0.24 Score=27.43 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA 48 (124)
Q Consensus 12 l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~ 48 (124)
+|-++|.+-.+.++.||+.-.++|..|+..+.++.++
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5668999999999999999999999999999998876
No 8
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=89.57 E-value=1.8 Score=27.46 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (124)
Q Consensus 14 le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~ 54 (124)
.++|..++..+..++..-...|..++..+.+....+..|+.
T Consensus 39 kEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 39 KEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57888999999888888888888888888887777666653
No 9
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=84.32 E-value=12 Score=28.58 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcc-CCC-CCceE----EEe-------c-------C
Q 033241 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA---STALHDLS-LRP-QGAKM----LVP-------L-------T 69 (124)
Q Consensus 13 ~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~---~~~l~~L~-~~~-~~~e~----lVp-------l-------g 69 (124)
+++++......+..++..+.+++..|+..+.++... ++.|..+. .-+ ...-- .|| + +
T Consensus 93 ~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~~ld~~~~~g~~~g~ip~~~~~~~~~~~l~~~~ 172 (357)
T 3rrk_A 93 SLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHGLDESPRLGVIPFLVAKPEELEAVRKALQEAL 172 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTCTTEEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccCCccceeeeeeEEecChhhHHHHHHHHHHhc
Confidence 588999999999999999999999999999999999 77777544 211 11111 232 1 1
Q ss_pred CceeEe-EEEcCCCeEEEEccC----------------cee-ee-----cCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033241 70 ASLYVP-GTLDDARKVLVDIGT----------------GYF-VE-----KTMDEGKDYCERKINLLKSNFDQLIEV 122 (124)
Q Consensus 70 ~~~yv~-a~I~~~~~VlV~lG~----------------g~~-vE-----~~~~eA~~~l~~r~~~l~~~i~~l~~~ 122 (124)
.++|+. ..-.....++|-+.. .-| +. .++.+++.-++.|++.++..++.+.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~ 248 (357)
T 3rrk_A 173 ADRFVLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREE 248 (357)
T ss_dssp TTSCEEEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 232222 221222232322221 111 11 277788999999999999998887653
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=83.21 E-value=5.5 Score=24.42 Aligned_cols=42 Identities=10% Similarity=0.129 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (124)
Q Consensus 13 ~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~ 54 (124)
++++|+...+.-.+++......|..+...+.+.+..+..|..
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999988888888888888888888877777766655543
No 11
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=79.31 E-value=9.3 Score=23.97 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=24.4
Q ss_pred CceeeecCHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 90 TGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121 (124)
Q Consensus 90 ~g~~vE~~~~eA~~~l~~r~~~l~~~i~~l~~ 121 (124)
++..||.|-|+|++++++---..+..|+.+.+
T Consensus 51 ~dllveitkdeaiehier~rl~ykreie~l~~ 82 (99)
T 3aei_A 51 SDLLVEITKDEAIEHIERSRLVYKREIEKLKK 82 (99)
T ss_dssp TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999998766666666665543
No 12
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=72.40 E-value=12 Score=22.02 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 16 QLKAIKEQTDLEVNLLQDSLNNIRT 40 (124)
Q Consensus 16 ~L~~~~~~l~~ei~~l~~~~~~L~~ 40 (124)
+|..+...+.+|+..++..+..|+.
T Consensus 31 QLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 31 QLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 3444444444444444444444443
No 13
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=70.22 E-value=3.6 Score=27.26 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 1 MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLN 36 (124)
Q Consensus 1 m~~~~~i~~~~l~le~L~~~~~~l~~ei~~l~~~~~ 36 (124)
|+++++ .++.|+|.+..++|+-|-..|.+++.
T Consensus 1 Mas~r~----~~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 1 MASKKP----DKTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp -----C----CSSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777666 78999999999999988888877665
No 14
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=69.79 E-value=9.1 Score=19.39 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 23 QTDLEVNLLQDSLNNIRTATSRLESAS 49 (124)
Q Consensus 23 ~l~~ei~~l~~~~~~L~~~~~~~~~~~ 49 (124)
.+++++.+|+.-.+.|+....++.++.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666665544
No 15
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=69.04 E-value=17 Score=22.30 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033241 11 KMSVEQLKAIKEQT--------DLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (124)
Q Consensus 11 ~l~le~L~~~~~~l--------~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L 55 (124)
-+|++++..+.... ..-.+.|.+++..+...+.++....+.|..+
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788887776532 2445677777788888888887777777764
No 16
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=65.75 E-value=15 Score=23.56 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSR 44 (124)
Q Consensus 10 ~~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~ 44 (124)
...+|++|..+.++|++-.+.|++....|...-..
T Consensus 4 a~~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~ 38 (94)
T 3fx7_A 4 VQMDTEEVREFVGHLERFKELLREEVNSLSNHFHN 38 (94)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34679999999888888888888777777665443
No 17
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=65.10 E-value=25 Score=26.46 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEE-EccCceee
Q 033241 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLV-DIGTGYFV 94 (124)
Q Consensus 16 ~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~~e~lVplg~~~yv~a~I~~~~~VlV-~lG~g~~v 94 (124)
+|.....++.+..+.|...+..++ .++..+.+-|+.|+. .|+.-|.|+... +.++++| +=|-.|+|
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar---~El~~LkeElerL~s--------PPL~iGtvlev~--dd~~aiV~s~Gr~~~V 124 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEAR---QQLLALREEVDRLGQ--------PPSGYGVLLATH--DDDTVDVFTSGRKMRL 124 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHH---HHHHHHHHHHHHHHS--------CCEEEEEEEEEC--SSSCEEEECSSSCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC--------CCceEEEEEEEc--CCCEEEEEeCCceEEE
Confidence 344444444444444444444444 444444555555543 344444454421 3344333 34444555
Q ss_pred ecC
Q 033241 95 EKT 97 (124)
Q Consensus 95 E~~ 97 (124)
..+
T Consensus 125 ~Vs 127 (251)
T 3m9b_A 125 TCS 127 (251)
T ss_dssp CBC
T ss_pred EeC
Confidence 444
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=64.88 E-value=7.1 Score=22.35 Aligned_cols=31 Identities=6% Similarity=0.126 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTA 41 (124)
Q Consensus 11 ~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~ 41 (124)
.-+.+.|......+..+++.|.+++..|+..
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555554443
No 19
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=64.84 E-value=18 Score=23.21 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCcee
Q 033241 26 LEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLY 73 (124)
Q Consensus 26 ~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~~e~lVplg~~~y 73 (124)
+.++.|..+++.+......--..--++..|+......+..|-.|-|.|
T Consensus 16 ~~~~~l~~~i~~~~~~~~~g~A~a~A~a~lp~~~~~gk~~v~~g~G~y 63 (105)
T 2lme_A 16 HKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGY 63 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEEecc
Confidence 344455555666666666655666777777643334456666665554
No 20
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=63.46 E-value=25 Score=22.64 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033241 29 NLLQDSLNNIRTATSRLESASTALHDLS 56 (124)
Q Consensus 29 ~~l~~~~~~L~~~~~~~~~~~~~l~~L~ 56 (124)
+.....+..|+..+..+.+|..+|+.|.
T Consensus 58 ee~R~~yE~LQDkL~qi~eAR~ALdaLR 85 (98)
T 3f1i_H 58 DERRLYYEGLQDKLAQIRDARGALSALR 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888888888888764
No 21
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=61.89 E-value=22 Score=21.27 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (124)
Q Consensus 11 ~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~ 45 (124)
..++++|...-.++......++..+..|+..+..+
T Consensus 8 ~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 8 KITPEELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999888888877777777777777665554
No 22
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=60.72 E-value=25 Score=21.31 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (124)
Q Consensus 11 ~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~ 46 (124)
.+++++|...-.++......+++.+..|...+..+.
T Consensus 7 ~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~ 42 (98)
T 3gwk_C 7 KLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVID 42 (98)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888777777777777777666554
No 23
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=58.65 E-value=38 Score=22.64 Aligned_cols=23 Identities=9% Similarity=0.325 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033241 24 TDLEVNLLQDSLNNIRTATSRLE 46 (124)
Q Consensus 24 l~~ei~~l~~~~~~L~~~~~~~~ 46 (124)
++++++.|+..+..|...+..|+
T Consensus 93 l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 93 LKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 24
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=58.61 E-value=22 Score=20.22 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 033241 9 MEKMSVEQLKAIKEQTD----LEVNLLQDSLNNIR 39 (124)
Q Consensus 9 ~~~l~le~L~~~~~~l~----~ei~~l~~~~~~L~ 39 (124)
+..||.++|.+....++ +|++.+..+|..=+
T Consensus 7 Lk~ls~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KR 41 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQSKR 41 (51)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhH
Confidence 45789999998766655 55555655554433
No 25
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=58.36 E-value=33 Score=21.93 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033241 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (124)
Q Consensus 12 l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~ 56 (124)
+.++.|.......++-+..-+..+..|+..+.......+.+..|+
T Consensus 2 ~~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk 46 (94)
T 3jsv_C 2 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLK 46 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888889999999999999998888888876
No 26
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=57.90 E-value=40 Score=22.64 Aligned_cols=29 Identities=3% Similarity=0.100 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 26 LEVNLLQDSLNNIRTATSRLESASTALHD 54 (124)
Q Consensus 26 ~ei~~l~~~~~~L~~~~~~~~~~~~~l~~ 54 (124)
+.++.+.+++..|+.....+...++.++.
T Consensus 102 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 102 QQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444
No 27
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=56.47 E-value=40 Score=22.19 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 033241 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL 57 (124)
Q Consensus 7 i~~~~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~~ 57 (124)
-....+-+..|..-....++-+..-+..+..++..+...++.++.|.-|+.
T Consensus 19 ~~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLka 69 (110)
T 2v4h_A 19 SHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKA 69 (110)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788999988899999999999999999999999998888888863
No 28
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=53.81 E-value=48 Score=25.65 Aligned_cols=14 Identities=21% Similarity=0.045 Sum_probs=8.1
Q ss_pred EEEccCceeeecCH
Q 033241 85 LVDIGTGYFVEKTM 98 (124)
Q Consensus 85 lV~lG~g~~vE~~~ 98 (124)
-++++.|.+++.-.
T Consensus 212 ~~~i~Ggi~a~~a~ 225 (346)
T 2nrj_A 212 GLPIIGGIIVGVAR 225 (346)
T ss_dssp EEEETTTEEEEEEG
T ss_pred hhhhhhHHHHHHHH
Confidence 34556677766544
No 29
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=52.00 E-value=19 Score=22.09 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033241 97 TMDEGKDYCERKINLLKSNFDQLIEVR 123 (124)
Q Consensus 97 ~~~eA~~~l~~r~~~l~~~i~~l~~~~ 123 (124)
+.++..+++..+++.+++++..++..+
T Consensus 36 ~~~~~~~~L~~~~~~l~~~i~~L~~~~ 62 (99)
T 1q08_A 36 TCQESKGIVQERLQEVEARIAELQSMQ 62 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999988754
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=51.86 E-value=38 Score=22.12 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (124)
Q Consensus 10 ~~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~ 45 (124)
...+.+++...+++...+++.|...+..|+..+.++
T Consensus 80 ~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 80 LELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888888888888888888777665
No 31
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.78 E-value=31 Score=19.55 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 22 EQTDLEVNLLQDSLNNIRTATSRLES 47 (124)
Q Consensus 22 ~~l~~ei~~l~~~~~~L~~~~~~~~~ 47 (124)
+.+..|.+.|+.++..|+....++..
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666665555543
No 32
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=51.42 E-value=52 Score=22.02 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeE--------eEEEcCCCeEEEEcc
Q 033241 24 TDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYV--------PGTLDDARKVLVDIG 89 (124)
Q Consensus 24 l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~~e~lVplg~~~yv--------~a~I~~~~~VlV~lG 89 (124)
+...+..|+++++.+......=-.+--++..|+.....-+.+|-+|.|.|= -..+.+..++.+.+|
T Consensus 37 ~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~LPq~~~pGk~~v~~g~G~Y~GqsAvAvG~s~~s~ngk~~~k~s 110 (129)
T 2gr7_A 37 LAGQVNNLEGKVNKVGKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLS 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSTTCEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCEEEEEEEEecCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 344555666666666555555556667788886433334566777766551 124445555555544
No 33
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=51.19 E-value=37 Score=20.25 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (124)
Q Consensus 11 ~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~ 46 (124)
..++++|...-.++......++..+..|...+..+.
T Consensus 5 ~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~ 40 (97)
T 2vs0_A 5 KMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIA 40 (97)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888877777777777777776666543
No 34
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=49.40 E-value=40 Score=20.16 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (124)
Q Consensus 12 l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~ 46 (124)
.++++|...-.++....+.++..+..|...+..+.
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~ 43 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQ 43 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888877777777777777666653
No 35
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.13 E-value=37 Score=19.65 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (124)
Q Consensus 17 L~~~~~~l~~ei~~l~~~~~~L~~~~~~~ 45 (124)
|..-...+..+...|...+..|......+
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444433333
No 36
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=48.11 E-value=49 Score=20.81 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (124)
Q Consensus 11 ~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~ 54 (124)
.++.+........++.++..+...+..|...+..+...++.+..
T Consensus 56 ~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 56 ELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556666777777777777777777776665555543
No 37
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=46.68 E-value=50 Score=20.45 Aligned_cols=34 Identities=6% Similarity=0.297 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (124)
Q Consensus 13 ~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~ 46 (124)
+++.|...-..+......++..+..|+..+..+.
T Consensus 12 ~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~ 45 (103)
T 4i0x_B 12 DLDHIEQVTSRARGFKEFVTENLDQLESRAQKLV 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566665555555555555555555555444443
No 38
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=46.66 E-value=70 Score=24.62 Aligned_cols=95 Identities=16% Similarity=0.142 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCc
Q 033241 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTG 91 (124)
Q Consensus 12 l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~~e~lVplg~~~yv~a~I~~~~~VlV~lG~g 91 (124)
..+.++...+-.+.++.+.|+.+|.+|....+....+.++++.|.... | ..+.++..|+=.+-..
T Consensus 10 ~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~-g--------------~~~~ds~~v~~~mq~~ 74 (302)
T 3ibp_A 10 DSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQC-G--------------EEFTSSQDVTEYLQQL 74 (302)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T--------------CCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHh-C--------------CcCCCHHHHHHHHHHH
Confidence 346677777888889999999999999999999999999999986421 0 1122221111111111
Q ss_pred eeeecCHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 92 YFVEKTMDEGKDYCERKINLLKSNFDQLIE 121 (124)
Q Consensus 92 ~~vE~~~~eA~~~l~~r~~~l~~~i~~l~~ 121 (124)
.--|+...-.++-+..+...|+..|+.|.+
T Consensus 75 Le~Ere~~~~Rd~~a~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 75 LEREREAIVERDEVGARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 112345555666677777777777777654
No 39
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=46.44 E-value=37 Score=19.34 Aligned_cols=34 Identities=6% Similarity=0.206 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (124)
Q Consensus 13 ~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~ 46 (124)
+.++.-.+..++..+++.+..+...|+..+.++.
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777776666666655543
No 40
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.33 E-value=32 Score=22.22 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=23.9
Q ss_pred EEcCCCeEEEEccCceeeecCHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 77 TLDDARKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIE 121 (124)
Q Consensus 77 ~I~~~~~VlV~lG~g~~vE~~~~eA~~~l~~r~~~l~~~i~~l~~ 121 (124)
.....++=+|++. .=|...|.+-..+-++.|+..++.|+.
T Consensus 50 d~~~~~TKVlH~~-----~NPa~~a~~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 50 DYDQSRTKVLHMS-----LNPTSVARQRLREDHSQLQAECERLRG 89 (100)
T ss_dssp CCCTTTEEEEEES-----SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccCeeeeec-----CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556644 346667766666777777777666653
No 41
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=45.75 E-value=64 Score=21.46 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 24 TDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (124)
Q Consensus 24 l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~ 54 (124)
+++.++.+.+++..|+.....+...++.++.
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554444443
No 42
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=45.70 E-value=46 Score=21.42 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 033241 24 TDLEVNLLQD 33 (124)
Q Consensus 24 l~~ei~~l~~ 33 (124)
++.++..+.+
T Consensus 12 l~~~~~~l~~ 21 (109)
T 2wg5_A 12 LEDKVEELLS 21 (109)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 43
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=45.51 E-value=61 Score=21.13 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (124)
Q Consensus 15 e~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~ 46 (124)
.-+++...+..+++..|.+++..|+..+..+.
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555566666666666666655554
No 44
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=44.92 E-value=56 Score=20.54 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033241 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (124)
Q Consensus 14 le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~ 53 (124)
++.+....+.+..++..|.+.+..+...+..+...+.-++
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566667777888888888888888887777776665553
No 45
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=43.98 E-value=41 Score=18.76 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (124)
Q Consensus 15 e~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~ 46 (124)
|-|..++......++.|.+++..+..++..+.
T Consensus 12 Eslv~FQ~~v~~~l~~Lt~kL~~vt~rle~lE 43 (47)
T 1aq5_A 12 KSIVKFQTKVEELINTLQQKLEAVAKRIEALE 43 (47)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888887777666654
No 46
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=43.33 E-value=57 Score=20.17 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033241 26 LEVNLLQDSLNNIRTATSR 44 (124)
Q Consensus 26 ~ei~~l~~~~~~L~~~~~~ 44 (124)
..++.++..+..|+..+++
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~ 45 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQE 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 3333444444444443333
No 47
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=42.92 E-value=37 Score=20.75 Aligned_cols=28 Identities=7% Similarity=0.207 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTA 41 (124)
Q Consensus 14 le~L~~~~~~l~~ei~~l~~~~~~L~~~ 41 (124)
|++|...-..+..-...++..+..|...
T Consensus 2 peel~~~a~~~~~~~~~i~~~l~~l~~~ 29 (94)
T 4i0x_A 2 IDEVGALSKFAASLADQMRAGSNSLDRD 29 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444444444444444444443
No 48
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=42.24 E-value=46 Score=20.88 Aligned_cols=44 Identities=9% Similarity=0.214 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033241 12 MSVEQLKAIKEQTD-LEVNLLQDSLNNIRTATSRLESASTALHDL 55 (124)
Q Consensus 12 l~le~L~~~~~~l~-~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L 55 (124)
+|++++..+...-. ...+.|.+++..|...+.+++..++.|+..
T Consensus 60 ~~l~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 104 (109)
T 1r8d_A 60 FRLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRT 104 (109)
T ss_dssp CCHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665543211 234566666777777777777766666653
No 49
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=41.41 E-value=72 Score=21.30 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033241 11 KMSVEQLKAIKEQ-------TDLEVNLLQDSLNNIRTATSRLESASTALHDL 55 (124)
Q Consensus 11 ~l~le~L~~~~~~-------l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L 55 (124)
-+|++++..+... .....+.+.+++..|...+.+++...+.|+..
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 124 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQK 124 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776552 34556677888888888888888877777663
No 50
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=41.15 E-value=1e+02 Score=22.40 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 20 IKEQTDLEVNLLQDSLNNIRTATSR 44 (124)
Q Consensus 20 ~~~~l~~ei~~l~~~~~~L~~~~~~ 44 (124)
..||++.++-.....++.|....++
T Consensus 31 ~~~~~~a~~~s~~s~~~dl~~s~~~ 55 (206)
T 3oa7_A 31 ALQQLRVNYGSFVSEYNDLTKSHNT 55 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444444444444443
No 51
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=39.76 E-value=73 Score=20.74 Aligned_cols=28 Identities=11% Similarity=0.279 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033241 26 LEVNLLQDSLNNIRTATSRLESASTALH 53 (124)
Q Consensus 26 ~ei~~l~~~~~~L~~~~~~~~~~~~~l~ 53 (124)
.++...++++..|+..+.++...++.++
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555554444444
No 52
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=39.14 E-value=38 Score=22.34 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033241 97 TMDEGKDYCERKINLLKSNFDQLIEVR 123 (124)
Q Consensus 97 ~~~eA~~~l~~r~~~l~~~i~~l~~~~ 123 (124)
+.++..+++..+++.+++++..++..+
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~ 102 (135)
T 1q06_A 76 HSADVKRRTLEKVAEIERHIEELQSMR 102 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888889988888887654
No 53
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.09 E-value=65 Score=19.60 Aligned_cols=42 Identities=10% Similarity=0.106 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (124)
Q Consensus 11 ~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l 52 (124)
++...+|.+....|+..+......+..|+..+.+-...++.+
T Consensus 6 ~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L 47 (78)
T 3efg_A 6 SPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARN 47 (78)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667777777777777777766665554444443
No 54
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=39.08 E-value=80 Score=20.67 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033241 11 KMSVEQLKAIKEQT-------DLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (124)
Q Consensus 11 ~l~le~L~~~~~~l-------~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~ 56 (124)
-+|++++..+.... ..-.+.+.+++..+...+.+++...+.|+.+.
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 57 GFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp TCCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777765432 23346677777777777777777777777653
No 55
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=38.03 E-value=52 Score=19.81 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 20 IKEQTDLEVNLLQDSLNNIRTATSRLES 47 (124)
Q Consensus 20 ~~~~l~~ei~~l~~~~~~L~~~~~~~~~ 47 (124)
+...++.+.+.+...+..|+.....+..
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544444433
No 56
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=37.83 E-value=1.2e+02 Score=22.14 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033241 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (124)
Q Consensus 21 ~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~ 56 (124)
..+++.++..|......|+......+...+.|+.|.
T Consensus 124 ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555555555556666653
No 57
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=37.50 E-value=1.1e+02 Score=21.98 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (124)
Q Consensus 21 ~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~ 54 (124)
...+..+.+.++..++.++....+|..+++..+.
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~ 174 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKAVSAKEALET 174 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666677777666666666665554
No 58
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=36.95 E-value=81 Score=21.25 Aligned_cols=45 Identities=7% Similarity=-0.027 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033241 12 MSVEQLKAIKEQ--------TDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (124)
Q Consensus 12 l~le~L~~~~~~--------l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~ 56 (124)
+|++++..+... ...-.+.+..++..|...+.+++...+.|+.+-
T Consensus 68 ~sl~eI~~~l~~~~~~~~~~~~~~~~ll~~~~~~l~~qi~~L~~~~~~L~~~~ 120 (154)
T 2zhg_A 68 IPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_dssp CCHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665432 122334556667777777777777777777754
No 59
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.89 E-value=45 Score=19.73 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.9
Q ss_pred CCceEEEecCCceeEeEEEcCCC
Q 033241 60 QGAKMLVPLTASLYVPGTLDDAR 82 (124)
Q Consensus 60 ~~~e~lVplg~~~yv~a~I~~~~ 82 (124)
++.++|..=+.|.|..|+|...+
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~ 32 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVS 32 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCC
T ss_pred cCCEEEEEecCCCEEEEEEEEEe
Confidence 57899999999999999999866
No 60
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.54 E-value=1.2e+02 Score=23.43 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 23 QTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (124)
Q Consensus 23 ~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~ 54 (124)
..+.+++.|+..+..++..+.++...+..+..
T Consensus 23 ~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 23 SHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555444443
No 61
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=36.39 E-value=38 Score=21.28 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033241 12 MSVEQLKAIKEQTD-LEVNLLQDSLNNIRTATSRLESASTALHDL 55 (124)
Q Consensus 12 l~le~L~~~~~~l~-~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L 55 (124)
+|++++..+...-. ...+.+.+++..+...+.+++..++.|+.+
T Consensus 59 ~sl~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 103 (108)
T 2vz4_A 59 FPLDEVAALLDDPAADPRAHLRRQHELLSARIGKLQKMAAAVEQA 103 (108)
T ss_dssp CCHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666543211 223556666777777777777777666654
No 62
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.85 E-value=49 Score=19.83 Aligned_cols=11 Identities=9% Similarity=0.310 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 033241 28 VNLLQDSLNNI 38 (124)
Q Consensus 28 i~~l~~~~~~L 38 (124)
+..|+.++..|
T Consensus 31 i~~LE~~v~~l 41 (70)
T 1gd2_E 31 LKALETQVVTL 41 (70)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 63
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=35.69 E-value=22 Score=20.75 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=24.4
Q ss_pred CCceEEEecCCceeEeEEEcCC----CeEEEEccCc
Q 033241 60 QGAKMLVPLTASLYVPGTLDDA----RKVLVDIGTG 91 (124)
Q Consensus 60 ~~~e~lVplg~~~yv~a~I~~~----~~VlV~lG~g 91 (124)
.+.++|+--+.|.|..|+|... ..-+|--+.|
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~ 41 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDD 41 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTS
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCC
Confidence 5789999999999999999862 2455554444
No 64
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.46 E-value=66 Score=19.77 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (124)
Q Consensus 21 ~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~ 54 (124)
++.+=..++.|+.....|+..+.....++..++.
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ 65 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEE 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555444
No 65
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=35.22 E-value=44 Score=23.08 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (124)
Q Consensus 16 ~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~ 45 (124)
++..++++++++.+.+.+...+|...+..+
T Consensus 74 qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv 103 (150)
T 4dci_A 74 QVANIQQQVAGKRSELEEQKRNLLQQQAQV 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777776666666665555554443
No 66
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=34.66 E-value=77 Score=19.22 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 033241 26 LEVNLLQDS 34 (124)
Q Consensus 26 ~ei~~l~~~ 34 (124)
.+.+.|..+
T Consensus 61 ~e~~~L~~e 69 (80)
T 1nlw_A 61 HQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 67
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=34.65 E-value=83 Score=19.55 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAS 49 (124)
Q Consensus 11 ~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~ 49 (124)
.+|+++|......+..-++.-.......+....+-.+-+
T Consensus 23 el~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl 61 (86)
T 3nr7_A 23 ESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKL 61 (86)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999998877777666665555554444333
No 68
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.40 E-value=65 Score=18.29 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033241 22 EQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (124)
Q Consensus 22 ~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~ 53 (124)
+.++.++..|...-..|...+..+..-+..|.
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555545555555544444444433
No 69
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=34.37 E-value=75 Score=22.79 Aligned_cols=32 Identities=3% Similarity=0.075 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 23 QTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (124)
Q Consensus 23 ~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~ 54 (124)
-+++..+.+.+++..|+.....+...++.++.
T Consensus 83 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (278)
T 1r8e_A 83 FYTEQERQIREKLDFLSALEQTISLVKKRMKR 114 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555554444444443
No 70
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.12 E-value=87 Score=19.60 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTA 51 (124)
Q Consensus 15 e~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~ 51 (124)
+.|..-.+.++.++..+..++..+.....++...+..
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777777777777777776666655443
No 71
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=33.80 E-value=1.4e+02 Score=21.79 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 23 QTDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (124)
Q Consensus 23 ~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~ 54 (124)
.+...++.|.+++..|+..+..+...++.++.
T Consensus 80 ~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~ 111 (249)
T 3qao_A 80 ALDMQRHLLIEKKQRIETMLATLDLTIKNEKG 111 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555556666666555555555544
No 72
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=33.51 E-value=1e+02 Score=20.29 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033241 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (124)
Q Consensus 15 e~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~ 56 (124)
.++.+++.+++..--..+.--+..+.++.+|++++-.|=+++
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~LlGyk 45 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQ 45 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeE
Confidence 345555555444333444434456678888999988887764
No 73
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=33.27 E-value=99 Score=20.01 Aligned_cols=51 Identities=8% Similarity=0.052 Sum_probs=34.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhc
Q 033241 5 KGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT----SRLESASTALHDL 55 (124)
Q Consensus 5 ~~i~~~~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~----~~~~~~~~~l~~L 55 (124)
.+.|+..||.++|...-+++-+-|..|.+.-=.|.... -++.+....+..|
T Consensus 35 ~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 35 KPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 45789999999999998888888877777644444433 3344444555555
No 74
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=32.53 E-value=1.3e+02 Score=21.84 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033241 100 EGKDYCERKINLLKSNFDQL 119 (124)
Q Consensus 100 eA~~~l~~r~~~l~~~i~~l 119 (124)
.=++++++++..+++.+..+
T Consensus 97 kEie~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENL 116 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444
No 75
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.23 E-value=90 Score=19.21 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA 48 (124)
Q Consensus 15 e~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~ 48 (124)
+.|..-.+.++.++..+..++..+.....++...
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666555543
No 76
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=31.98 E-value=92 Score=24.22 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=13.0
Q ss_pred EecCCceeEeEEEcCCCeEEEEcc
Q 033241 66 VPLTASLYVPGTLDDARKVLVDIG 89 (124)
Q Consensus 66 Vplg~~~yv~a~I~~~~~VlV~lG 89 (124)
.||++++|+.. .+++.-..|
T Consensus 311 ~~lAgal~~~~----~~~~~y~y~ 330 (426)
T 1lrz_A 311 LPISAGFFFIN----PFEVVYYAG 330 (426)
T ss_dssp EEEEEEEEEEC----SSCEEEEEE
T ss_pred ceeEEEEEEEE----CCEEEEEec
Confidence 78888888763 355555544
No 77
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=31.48 E-value=92 Score=19.12 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (124)
Q Consensus 21 ~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l 52 (124)
+.++.+.+...+..+..|+...+++..-...|
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL 44 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHH
Confidence 44455555555555555555555555443333
No 78
>3emo_C HIA (adhesin); transmembrane, outer membrane, trimeric autotransporter, membrane protein/cell adhesion complex; 3.00A {Haemophilus influenzae}
Probab=31.26 E-value=1.3e+02 Score=20.80 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhccCCCCCceEEEecCCceeE--------eE
Q 033241 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLE-------SASTALHDLSLRPQGAKMLVPLTASLYV--------PG 76 (124)
Q Consensus 12 l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~-------~~~~~l~~L~~~~~~~e~lVplg~~~yv--------~a 76 (124)
.+.-||....+++ ..+..++..|...+.+.. ..--++..|+.....-+..|-+|.|.|= -.
T Consensus 55 vN~~Ql~~~~~~v----~n~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~LP~~~~pGk~~va~G~G~Y~GqsAvAvG~s 130 (162)
T 3emo_C 55 INGSQLYAVAKGV----TNLAGQVNNLEGKVNKVGKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVS 130 (162)
T ss_dssp CBHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred ccHHHHhhhhhhh----hhhHHHHHHHHhhhhhhHHhHHHHHHHHHHhccCCCcCCCCCEEEEEEEEeeCCCcEEEEEee
Confidence 3456666665543 234445555555555544 4556777785332233556777765541 11
Q ss_pred EEcCCCeEEEEccC
Q 033241 77 TLDDARKVLVDIGT 90 (124)
Q Consensus 77 ~I~~~~~VlV~lG~ 90 (124)
.+.+..++++.+|.
T Consensus 131 ~~s~N~~~~~k~s~ 144 (162)
T 3emo_C 131 RISDNGKVIIRLSG 144 (162)
T ss_dssp EECTTSSEEEEEEE
T ss_pred eeccCCcEEEEEEE
Confidence 45556666665543
No 79
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=31.11 E-value=54 Score=21.24 Aligned_cols=24 Identities=4% Similarity=0.253 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 24 TDLEVNLLQDSLNNIRTATSRLES 47 (124)
Q Consensus 24 l~~ei~~l~~~~~~L~~~~~~~~~ 47 (124)
+.++++.|+.++.+|+..+..+..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666666666655
No 80
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=30.95 E-value=61 Score=18.48 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Q 033241 2 ASSKGGGMEKMSVEQLKAIKEQTD 25 (124)
Q Consensus 2 ~~~~~i~~~~l~le~L~~~~~~l~ 25 (124)
|+...++++.|.+.+|.+..++..
T Consensus 3 s~~~~~~l~klkV~eLK~~L~~rG 26 (55)
T 2do1_A 3 SGSSGVELHKLKLAELKQECLARG 26 (55)
T ss_dssp SCCCCCCTTTSCHHHHHHHHHHHT
T ss_pred CcccccCHHHCcHHHHHHHHHHcC
Confidence 446679999999999999877654
No 81
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=30.55 E-value=1e+02 Score=19.22 Aligned_cols=24 Identities=13% Similarity=0.273 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 26 LEVNLLQDSLNNIRTATSRLESAS 49 (124)
Q Consensus 26 ~ei~~l~~~~~~L~~~~~~~~~~~ 49 (124)
.+++.+...+..|+....++.+..
T Consensus 45 ~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 45 KEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443333
No 82
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=30.44 E-value=72 Score=19.56 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=20.4
Q ss_pred EccCceeeecCHHHHHHHHHHHHHHHH
Q 033241 87 DIGTGYFVEKTMDEGKDYCERKINLLK 113 (124)
Q Consensus 87 ~lG~g~~vE~~~~eA~~~l~~r~~~l~ 113 (124)
.++.|-|=++|+++|++...+-...+.
T Consensus 50 ~~~LG~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 50 RIALGAYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp EEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHHHH
Confidence 456678899999999987766555543
No 83
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=30.28 E-value=70 Score=17.37 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033241 30 LLQDSLNNIRTATSRLES 47 (124)
Q Consensus 30 ~l~~~~~~L~~~~~~~~~ 47 (124)
.|..++..|..+...+.+
T Consensus 20 ~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 20 DFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 84
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=30.18 E-value=55 Score=16.15 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033241 16 QLKAIKEQTDLEVNLLQDSLNNI 38 (124)
Q Consensus 16 ~L~~~~~~l~~ei~~l~~~~~~L 38 (124)
||.++.-.++.|-..+......|
T Consensus 3 qlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555655555544444333
No 85
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=29.94 E-value=1.3e+02 Score=21.40 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLESAS 49 (124)
Q Consensus 17 L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~ 49 (124)
|....++++++++.|+..+..|...+..+....
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 84 YTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455666777777777777766666655443
No 86
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=29.25 E-value=48 Score=20.49 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 033241 37 NIRTATSRLESASTALHDLS 56 (124)
Q Consensus 37 ~L~~~~~~~~~~~~~l~~L~ 56 (124)
++...+.++++++++|+.++
T Consensus 56 QideeV~~LKe~IdaLNK~K 75 (83)
T 1zke_A 56 QLSEEVERLKELINALNKIK 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666665
No 87
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=29.13 E-value=1.1e+02 Score=19.13 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 15 EQLKAIKEQTDLEVNLLQDSLNNI 38 (124)
Q Consensus 15 e~L~~~~~~l~~ei~~l~~~~~~L 38 (124)
+.|..-...++++...+.+++..+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 88
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=28.89 E-value=1.6e+02 Score=24.16 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccC
Q 033241 12 MSVEQLKAIKEQTDLEVNLLQDSL----NNIRTATSRLESASTALHDLSL 57 (124)
Q Consensus 12 l~le~L~~~~~~l~~ei~~l~~~~----~~L~~~~~~~~~~~~~l~~L~~ 57 (124)
..++.+..++++++.+...++..- ..|..+.+-+.+|.++|++|++
T Consensus 25 ~~~~~~~~~~~~l~~~~~~i~~~k~~~e~dLa~A~PaL~~A~~AL~~L~k 74 (536)
T 3err_A 25 LDLEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKK 74 (536)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 356666666666665555544433 3677788889999999999874
No 89
>4ekx_C 14L protein; binding protein, beta trefoil, immunoglobulin fold, YLDV, YA yatapoxvirus, cytokine signaling, cytokine-viral prote complex; 1.75A {Yaba-like disease virus} PDB: 4eee_A
Probab=28.60 E-value=86 Score=20.63 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=23.8
Q ss_pred CceEEEecCCc--eeEeEEEcC---CCeEEEE-ccCceeee
Q 033241 61 GAKMLVPLTAS--LYVPGTLDD---ARKVLVD-IGTGYFVE 95 (124)
Q Consensus 61 ~~e~lVplg~~--~yv~a~I~~---~~~VlV~-lG~g~~vE 95 (124)
+..+.||+-.+ +.++++.-. ....++| +|.|-|+|
T Consensus 6 ~~~v~vp~~~ts~l~l~C~~~s~~~~fS~lYW~lgN~sfIe 46 (116)
T 4ekx_C 6 SVNIHVPVKETSKVVLECRGDSYFRHFSYVYWIIGKNKTVD 46 (116)
T ss_dssp EEEEEEESSCCSEEEEEEEEECSCTTSCEEEEEETTTEEGG
T ss_pred eEEEEeccCCCcEEEEEeEEEeCCCCccEEEEEEcCCcchh
Confidence 46677888777 666665542 2447777 89898887
No 90
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=28.57 E-value=85 Score=17.78 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033241 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (124)
Q Consensus 21 ~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~ 53 (124)
--.+.+|++.-+.+++.|.......++....+.
T Consensus 19 NshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 19 NSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 345667777777777777777777766655443
No 91
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.54 E-value=1.1e+02 Score=19.04 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLE 46 (124)
Q Consensus 17 L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~ 46 (124)
+..-...|+.+-..|..++.+|......+.
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555444443
No 92
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=28.52 E-value=1e+02 Score=21.93 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=18.5
Q ss_pred CCceEEEecCCceeEeEEEcCC
Q 033241 60 QGAKMLVPLTASLYVPGTLDDA 81 (124)
Q Consensus 60 ~~~e~lVplg~~~yv~a~I~~~ 81 (124)
...--.+.||.++|+.-.|.+-
T Consensus 114 ~~~~RRIalg~~vsl~i~vdP~ 135 (186)
T 3zqs_A 114 SATARRIALGNNVSINIEVDPR 135 (186)
T ss_dssp TCCEEEEEEETTEEEEEECCTT
T ss_pred cCcEEEEEECCCcEEEEEECCC
Confidence 4567889999999999999653
No 93
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.35 E-value=90 Score=17.98 Aligned_cols=20 Identities=5% Similarity=0.174 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033241 21 KEQTDLEVNLLQDSLNNIRT 40 (124)
Q Consensus 21 ~~~l~~ei~~l~~~~~~L~~ 40 (124)
.+.+..+...|..++..|..
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 94
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.14 E-value=92 Score=17.72 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 21 KEQTDLEVNLLQDSLNNIRTATSRLESASTAL 52 (124)
Q Consensus 21 ~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l 52 (124)
.+.++.++..|...-..|...+..+..-+..|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554444333
No 95
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.01 E-value=1.1e+02 Score=18.72 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 18 KAIKEQTDLEVNLLQDSLNNIRTATS 43 (124)
Q Consensus 18 ~~~~~~l~~ei~~l~~~~~~L~~~~~ 43 (124)
....+.+..+++.|..+..+|...+.
T Consensus 58 ~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 58 QAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444333
No 96
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=26.87 E-value=86 Score=18.59 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 14 VEQLKAIKEQTDLEVNLLQDSLNNIRT 40 (124)
Q Consensus 14 le~L~~~~~~l~~ei~~l~~~~~~L~~ 40 (124)
+++|...-..+......++..+..|..
T Consensus 7 ~~~l~~~a~~~~~~~~~i~~~l~~l~~ 33 (94)
T 3fav_B 7 FAGIEAAASAIQGNVTSIHSLLDEGKQ 33 (94)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333
No 97
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=26.73 E-value=1.2e+02 Score=18.71 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (124)
Q Consensus 9 ~~~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~ 47 (124)
....++++|......++.++=.|=.+...+-..+.+++.
T Consensus 9 ~~~~~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~ 47 (90)
T 2vkl_A 9 QPVPEIDTLREEIDRLDAEILALVKRRAEVSKAIGKARM 47 (90)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666665555555555555555554
No 98
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=26.27 E-value=73 Score=22.00 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=21.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033241 96 KTMDEGKDYCERKINLLKSNFDQLIEVR 123 (124)
Q Consensus 96 ~~~~eA~~~l~~r~~~l~~~i~~l~~~~ 123 (124)
..+++..+..+.|+..|++.+++++..|
T Consensus 98 ~~a~~~~~~s~~ri~~lekeL~~i~~~~ 125 (160)
T 2cly_B 98 KSCAEFLTQSKTRIQEYEKELEKMRNII 125 (160)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455777788899999999999998765
No 99
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.26 E-value=1.6e+02 Score=21.53 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (124)
Q Consensus 17 L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~ 47 (124)
|.+-.++.+.|++.++.++.+.+.+.+++++
T Consensus 183 l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 183 LSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555444
No 100
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=26.24 E-value=1.2e+02 Score=18.56 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 8 GMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (124)
Q Consensus 8 ~~~~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~ 45 (124)
..+.+|-++|.++.-+.+.++..-..++..|+.-+..+
T Consensus 10 ~y~~ltreELi~l~lk~~~~l~~k~~~v~eLEdYID~L 47 (75)
T 3tso_C 10 GYRSLTYEEVLQELVKHKELLRRKDTHIRELEDYIDNL 47 (75)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999998888888888877777777666654
No 101
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=25.99 E-value=1.4e+02 Score=19.79 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033241 12 MSVEQLKAIKEQ----TDLEVNLLQDSLNNIRTATSRLESASTALHD 54 (124)
Q Consensus 12 l~le~L~~~~~~----l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~ 54 (124)
+|++++..+... ....++.|..+...|...+.+++..++.|+.
T Consensus 62 ~sl~~I~~~l~~~~~~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~ 108 (146)
T 3hh0_A 62 FSLGEIQNIILQRDIETEVFLRQMHFQREVLLAEQERIAKVLSHMDE 108 (146)
T ss_dssp CCHHHHHHHHTSSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544321 1223334444444555555555544444444
No 102
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=25.96 E-value=1.4e+02 Score=19.31 Aligned_cols=50 Identities=8% Similarity=0.089 Sum_probs=33.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhc
Q 033241 6 GGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT----SRLESASTALHDL 55 (124)
Q Consensus 6 ~i~~~~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~----~~~~~~~~~l~~L 55 (124)
+.|+..||.++|...-+++-+-|..|.+.-=.|.... -++.+....+..|
T Consensus 36 pL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 36 VLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 3578889999999998888888877777644444433 2344444444444
No 103
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=25.89 E-value=50 Score=17.47 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 033241 10 EKMSVEQLKAIKEQTDLEVNLLQD 33 (124)
Q Consensus 10 ~~l~le~L~~~~~~l~~ei~~l~~ 33 (124)
..-++|||.+....|.+-++.+..
T Consensus 10 ~~a~pEela~Y~~~Lr~YinlvTR 33 (37)
T 1f8p_A 10 EDAPAEDLARYYSALRHYINLITR 33 (37)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcc
Confidence 456789999999999988877764
No 104
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=25.76 E-value=86 Score=16.92 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 033241 11 KMSVEQLKAIKEQTDLEVNLLQ 32 (124)
Q Consensus 11 ~l~le~L~~~~~~l~~ei~~l~ 32 (124)
.-|+|||.+...++.+-++.+.
T Consensus 15 ~aspEela~Y~~~Lr~YinlvT 36 (41)
T 2l60_A 15 KLSPEELNRYYASLRHYLNLVT 36 (41)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 4578999999999888776653
No 105
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=25.64 E-value=1.7e+02 Score=20.19 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 16 QLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA 48 (124)
Q Consensus 16 ~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~ 48 (124)
++..+++.+..++..+.+++..|...+..|-++
T Consensus 42 eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~ 74 (171)
T 2p2u_A 42 AIDAAKARASQKSAPLLARRKELEDGVATFATL 74 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666777777777777666554
No 106
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=25.63 E-value=1.4e+02 Score=19.16 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (124)
Q Consensus 10 ~~l~le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~ 45 (124)
..+||++...++++-..-+...++.+...+..+..+
T Consensus 49 gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~~L 84 (100)
T 1vp7_A 49 GTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVL 84 (100)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776666666666666666666655555555
No 107
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=25.56 E-value=81 Score=16.54 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 033241 10 EKMSVEQLKAIKEQTDLEVNLLQ 32 (124)
Q Consensus 10 ~~l~le~L~~~~~~l~~ei~~l~ 32 (124)
..-++|||.+....+..-|+.+.
T Consensus 10 ~dA~~Eela~Y~~~LrhYiNlvT 32 (36)
T 2bf9_A 10 DDAPVEDLIRFYNDLQQYLNVVT 32 (36)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999988777654
No 108
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.22 E-value=1.3e+02 Score=18.86 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033241 23 QTDLEVNLLQDSLNNIRTATSRLESASTALH 53 (124)
Q Consensus 23 ~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~ 53 (124)
.|+.+...|+.++..|.....++....+.+.
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544443
No 109
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.06 E-value=2e+02 Score=20.88 Aligned_cols=34 Identities=6% Similarity=0.234 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033241 23 QTDLEVNLLQDSLNNIRTATSRLESASTALHDLS 56 (124)
Q Consensus 23 ~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~ 56 (124)
.|..+++.+...+..|+....++++..+.+..|.
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la 152 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAEVAEHVQYMA 152 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666653
No 110
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=25.03 E-value=78 Score=19.12 Aligned_cols=27 Identities=15% Similarity=0.104 Sum_probs=19.1
Q ss_pred cCCCeEEEEccCceeeecCHHHHHHHHH
Q 033241 79 DDARKVLVDIGTGYFVEKTMDEGKDYCE 106 (124)
Q Consensus 79 ~~~~~VlV~lG~g~~vE~~~~eA~~~l~ 106 (124)
...+.|+||+|.-.- -.+.++|.+.++
T Consensus 37 ~vGD~VLVH~GfAi~-~ideeeA~etl~ 63 (75)
T 2z1c_A 37 KPGDWVIVHTGFAIE-KLDEKKAMEILE 63 (75)
T ss_dssp CTTCEEEEETTEEEE-EECHHHHHHHHH
T ss_pred CCCCEEEEecchhhh-hCCHHHHHHHHH
Confidence 446899999874433 267888887765
No 111
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.79 E-value=1e+02 Score=17.39 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 15 EQLKAIKEQTDLEVNLLQDSLNNIR 39 (124)
Q Consensus 15 e~L~~~~~~l~~ei~~l~~~~~~L~ 39 (124)
.+|..--++|..++..|+..+..++
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 112
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=24.78 E-value=70 Score=15.54 Aligned_cols=14 Identities=36% Similarity=0.366 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q 033241 99 DEGKDYCERKINLL 112 (124)
Q Consensus 99 ~eA~~~l~~r~~~l 112 (124)
=||-+|++||....
T Consensus 9 LeAAeyLErrEre~ 22 (26)
T 1pd7_B 9 LEAADYLERREREA 22 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 47889999887643
No 113
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=24.43 E-value=78 Score=26.89 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.2
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHH
Q 033241 89 GTGYFVEKTMDEGKDYCERKINLLKS 114 (124)
Q Consensus 89 G~g~~vE~~~~eA~~~l~~r~~~l~~ 114 (124)
|.|=|++.|-+||++++.++++.+.+
T Consensus 110 G~g~~~~iSWdeAl~~ia~~l~~i~~ 135 (829)
T 1tmo_A 110 GDFRFVRVTWDKALTLFKHSLDEVQT 135 (829)
T ss_dssp TSCEEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEecHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999988765
No 114
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=24.28 E-value=1.7e+02 Score=19.84 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIR 39 (124)
Q Consensus 10 ~~l~le~L~~~~~~l~~ei~~l~~~~~~L~ 39 (124)
+.|+.++|..+++.|.+..+.|..++....
T Consensus 30 ~~M~~~ql~~fr~~L~~~k~eL~~~l~~~~ 59 (151)
T 1tjl_A 30 EYMNEAQLAHFRRILEAWRNQLRDEVDRTV 59 (151)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999988888877666543
No 115
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=24.27 E-value=1.7e+02 Score=19.88 Aligned_cols=41 Identities=7% Similarity=0.135 Sum_probs=25.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHH
Q 033241 5 KGGGMEKMSVEQLKAIKEQTDLE--VN-LLQDSLNNIRTATSRL 45 (124)
Q Consensus 5 ~~i~~~~l~le~L~~~~~~l~~e--i~-~l~~~~~~L~~~~~~~ 45 (124)
+.+||+.|+.++...+.+-++.+ ++ .-++++..|+..+.+.
T Consensus 10 ~~~dLs~LteeEr~~Il~VL~Rd~~l~~~EeeRi~kLk~~l~~~ 53 (153)
T 2zet_C 10 KRLDLSTLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQKE 53 (153)
T ss_dssp -CCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCCHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 56999999999998876644432 22 2335566666665544
No 116
>2gr8_A Adhesin; trimeric autotransporter, adhesion, protein secretion, microbial pathogenesis, membrane protein; 2.00A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=24.14 E-value=72 Score=20.31 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeE--------eEEEcCCCeEEEEcc
Q 033241 28 VNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYV--------PGTLDDARKVLVDIG 89 (124)
Q Consensus 28 i~~l~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~~e~lVplg~~~yv--------~a~I~~~~~VlV~lG 89 (124)
...|+.+++.+......=-.+--++..|+......+.+|-+|.|.|= -..+.+..++.+.+|
T Consensus 11 ~~~l~~~I~~~~k~a~aGiA~A~A~a~lpq~~~pGk~~v~~g~g~y~GqsAvAvG~s~~s~ngk~~~k~~ 80 (99)
T 2gr8_A 11 SGGGGGLVPRGSKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLS 80 (99)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCCCCSTTCEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCcEEEEEEEEecCCceEEEEEEEEEcCCCCEEEEEE
Confidence 34555666666555555555667778887544445577888876651 124555555655544
No 117
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=24.10 E-value=99 Score=18.79 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRL 45 (124)
Q Consensus 15 e~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~ 45 (124)
+.+..-++.+..++...+..+..+......+
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L 69 (118)
T 3uul_A 39 KEQFATHETFMMELSAHQSSVGSVLQAGNQL 69 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344556666666655555555544443
No 118
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=24.06 E-value=68 Score=18.08 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 033241 24 TDLEVNLLQDSLNNI 38 (124)
Q Consensus 24 l~~ei~~l~~~~~~L 38 (124)
++..+..|...+..|
T Consensus 49 L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 49 LQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444433333
No 119
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=24.03 E-value=74 Score=26.83 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=24.1
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHHH
Q 033241 89 GTGYFVEKTMDEGKDYCERKINLLKSN 115 (124)
Q Consensus 89 G~g~~vE~~~~eA~~~l~~r~~~l~~~ 115 (124)
|.|=|++.|-+||.+++.++++.+.+.
T Consensus 77 G~g~~~~iSWdeAl~~ia~~l~~i~~~ 103 (780)
T 1eu1_A 77 GNGDFVRVTWDEALDLVARELKRVQES 103 (780)
T ss_dssp TSSCEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEecHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999887653
No 120
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=24.01 E-value=1.1e+02 Score=21.95 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=28.9
Q ss_pred ccCCCCCceEEEecCCceeEeEEEcCCCeEEEEccCc
Q 033241 55 LSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTG 91 (124)
Q Consensus 55 L~~~~~~~e~lVplg~~~yv~a~I~~~~~VlV~lG~g 91 (124)
|..+..|..+.|-..+|=-+.|+|.+.++|.|.+.-+
T Consensus 165 L~~G~~Gd~IrVr~~Sgkiv~g~V~~~g~V~V~L~p~ 201 (219)
T 3tee_A 165 MNNAAVAQNARVRMTSGQIVSGTVDSDGNILINLDPN 201 (219)
T ss_dssp CSCBCTTSEEEEEETTSCEEEEEECTTSCEEEEC---
T ss_pred ccccCCCCEEEEECCCCCEEEEEEecCCEEEEEcCCC
Confidence 3334567788899999999999999999999998644
No 121
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=23.82 E-value=1.2e+02 Score=19.36 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=15.9
Q ss_pred EeEEEcCCCeEEEEccCcee
Q 033241 74 VPGTLDDARKVLVDIGTGYF 93 (124)
Q Consensus 74 v~a~I~~~~~VlV~lG~g~~ 93 (124)
+-.++...++|+|-+|.||.
T Consensus 46 i~vRil~~~~vMVRVGGGW~ 65 (97)
T 1v5r_A 46 LFIRMLHNKHVMVRVGGGWE 65 (97)
T ss_dssp EEEEEETTTEEEEEETTEEE
T ss_pred EEEEEecCCEEEEEeCCcHH
Confidence 44566677799999999995
No 122
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=23.55 E-value=80 Score=15.77 Aligned_cols=18 Identities=11% Similarity=0.294 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033241 26 LEVNLLQDSLNNIRTATS 43 (124)
Q Consensus 26 ~ei~~l~~~~~~L~~~~~ 43 (124)
+|+..|...+..|+-.+.
T Consensus 9 qeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 9 QEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 123
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.55 E-value=1.5e+02 Score=19.05 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRT 40 (124)
Q Consensus 9 ~~~l~le~L~~~~~~l~~ei~~l~~~~~~L~~ 40 (124)
|..||-++|.+-+-+++..++.++..-..|+.
T Consensus 27 L~~mSKqELIqEYl~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 27 LQNMSKQELIKEYLELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999888888888777554444444
No 124
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.50 E-value=43 Score=22.39 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 033241 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDS 34 (124)
Q Consensus 7 i~~~~l~le~L~~~~~~l~~ei~~l~~~ 34 (124)
-.|-.+|.++|......+..|+-+|.-+
T Consensus 7 ~ELR~~s~eEL~~~L~eLK~ELf~LRfq 34 (123)
T 2zkr_v 7 RDLRGKKKEELLKQLDDLKVELSQLRVA 34 (123)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999998887543
No 125
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.36 E-value=1e+02 Score=21.60 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIR 39 (124)
Q Consensus 7 i~~~~l~le~L~~~~~~l~~ei~~l~~~~~~L~ 39 (124)
.|||+-.-.++..+.++...+...+.+++...+
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr 98 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKR 98 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455566655555554444333
No 126
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=23.31 E-value=77 Score=26.41 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=23.0
Q ss_pred cCceeeecCHHHHHHHHHHHHHHHHH
Q 033241 89 GTGYFVEKTMDEGKDYCERKINLLKS 114 (124)
Q Consensus 89 G~g~~vE~~~~eA~~~l~~r~~~l~~ 114 (124)
|.|=|.+.|-+||.+++.++++.+.+
T Consensus 71 G~g~~~~isWdeAl~~ia~~l~~i~~ 96 (727)
T 2e7z_A 71 GEQRWERISWDQALDEIAEKLKKIIA 96 (727)
T ss_dssp TCCCEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEecHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999988765
No 127
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=23.26 E-value=1.5e+02 Score=18.84 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=21.5
Q ss_pred EccCceeeecCHHHHHHHHHHHHHHHHH
Q 033241 87 DIGTGYFVEKTMDEGKDYCERKINLLKS 114 (124)
Q Consensus 87 ~lG~g~~vE~~~~eA~~~l~~r~~~l~~ 114 (124)
.++.|-|=++|+.+|++....-...+..
T Consensus 50 ~~~LG~yp~~SLa~AR~~a~~~r~~l~~ 77 (108)
T 3ju0_A 50 LLALGVYPAVSLADARQRRDEAKKLLAA 77 (108)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4667789999999999887766655543
No 128
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=23.26 E-value=95 Score=21.67 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=26.1
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033241 94 VEKTMDEGKDYCERKINLLKSNFDQLIEVR 123 (124)
Q Consensus 94 vE~~~~eA~~~l~~r~~~l~~~i~~l~~~~ 123 (124)
--.+.+++...+++|++.++..++.+...+
T Consensus 116 ~~l~~e~~~~~L~~r~~~l~~~l~~~~~~~ 145 (180)
T 2rkh_A 116 GLMEAEERAHQIDLLIEGVDSELARLADLR 145 (180)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999988764
No 129
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=23.24 E-value=78 Score=26.62 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.6
Q ss_pred CceeeecCHHHHHHHHHHHHHHHHH
Q 033241 90 TGYFVEKTMDEGKDYCERKINLLKS 114 (124)
Q Consensus 90 ~g~~vE~~~~eA~~~l~~r~~~l~~ 114 (124)
.|=|.+.|-+||.+++.++++.+.+
T Consensus 109 ~g~~~~isWdeAl~~ia~~l~~i~~ 133 (765)
T 2vpz_A 109 EGKYRVATWEEALDHIAKKMLEIRE 133 (765)
T ss_dssp SCCEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEeeHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999988764
No 130
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=23.15 E-value=1e+02 Score=20.78 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033241 97 TMDEGKDYCERKINLLKSNFDQLIEVR 123 (124)
Q Consensus 97 ~~~eA~~~l~~r~~~l~~~i~~l~~~~ 123 (124)
+.++...++..+.+.++.++..|+..+
T Consensus 87 ~~~~~~~ll~~~~~~l~~qi~~L~~~~ 113 (154)
T 2zhg_A 87 SAKEWKQLSSQWREELDRRIHTLVALR 113 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888887654
No 131
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=22.74 E-value=3.2 Score=27.84 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=18.7
Q ss_pred HHHHHHhhccCCCCCceEEEecCCceeEeEEE
Q 033241 47 SASTALHDLSLRPQGAKMLVPLTASLYVPGTL 78 (124)
Q Consensus 47 ~~~~~l~~L~~~~~~~e~lVplg~~~yv~a~I 78 (124)
....+|..+.. ..|..+.++-++-+|+...+
T Consensus 101 ~i~~ai~~vak-~~gy~~Vld~~~vly~~~~~ 131 (143)
T 1u2m_A 101 RIQTAVKSVAN-SQDIDLVVDANAVAYNSSDV 131 (143)
T ss_dssp HHHHHHHHHHH-HTTCSEEEEGGGEEEECTTS
T ss_pred HHHHHHHHHHH-HCCCeEEEECCceeEeCCCc
Confidence 33344555432 35788888877666776554
No 132
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=22.71 E-value=51 Score=21.93 Aligned_cols=33 Identities=27% Similarity=0.158 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 033241 1 MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQD 33 (124)
Q Consensus 1 m~~~~~i~~~~l~le~L~~~~~~l~~ei~~l~~ 33 (124)
|+--+.-.|-.+|.++|......+..|+-+|.-
T Consensus 1 Ma~mK~~ELR~~s~eEL~~~L~eLK~ELf~LRf 33 (120)
T 3u5e_h 1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKV 33 (120)
T ss_dssp -CCCCHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 333333457789999999999999888877653
No 133
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.63 E-value=1.5e+02 Score=18.45 Aligned_cols=27 Identities=7% Similarity=0.259 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 26 LEVNLLQDSLNNIRTATSRLESASTAL 52 (124)
Q Consensus 26 ~ei~~l~~~~~~L~~~~~~~~~~~~~l 52 (124)
.+++.+...+..++....++++..+.+
T Consensus 53 ~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 53 KEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 134
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.53 E-value=2.4e+02 Score=23.49 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033241 29 NLLQDSLNNIRTATSRLE 46 (124)
Q Consensus 29 ~~l~~~~~~L~~~~~~~~ 46 (124)
+.|+..|..+...+.+++
T Consensus 134 rvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 135
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=22.47 E-value=32 Score=20.64 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Q 033241 8 GMEKMSVEQLKAIKEQTDLEVNLLQD 33 (124)
Q Consensus 8 ~~~~l~le~L~~~~~~l~~ei~~l~~ 33 (124)
.|-.+|.++|......+..|+-+|.-
T Consensus 8 elr~~s~~EL~~~l~elk~ELf~LR~ 33 (71)
T 1vq8_V 8 EIRDMTPAEREAELDDLKTELLNARA 33 (71)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999988888888877653
No 136
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=22.45 E-value=73 Score=23.44 Aligned_cols=64 Identities=8% Similarity=0.037 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEecCCceeEeEEEcC------CCeEEEEccC
Q 033241 17 LKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDD------ARKVLVDIGT 90 (124)
Q Consensus 17 L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~~~~~l~~L~~~~~~~e~lVplg~~~yv~a~I~~------~~~VlV~lG~ 90 (124)
|.+..++|.+++..|+.+...+.....+.....+.|+.-. . +...-|+.|+|.. .+.|+++-|.
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~~-~---------~~~~~~i~A~VI~~~~~~~~~~i~IdkGs 93 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITD-S---------IRDYDPLNASVISRNPTNWNDQVEIDKGS 93 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-C---------TTCEEEEEEEEEECCGGGTTTEEEESCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-c---------cccCceEEEEEEEECCCCcceEEEEeCCc
Confidence 3334445666666666666666655555555444444311 1 0112345565542 4578888876
No 137
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=22.19 E-value=1e+02 Score=18.85 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=10.3
Q ss_pred CCCeEEEE--ccCceeeecC
Q 033241 80 DARKVLVD--IGTGYFVEKT 97 (124)
Q Consensus 80 ~~~~VlV~--lG~g~~vE~~ 97 (124)
+.++++|. -|..|||..+
T Consensus 29 dd~~~iVkss~g~~~~V~v~ 48 (85)
T 3h43_A 29 GERKVVVKSSTGPSFLVNVS 48 (85)
T ss_dssp ETTEEEEEETTSSEEEEEBC
T ss_pred CCCEEEEEeCCCCeEEEEec
Confidence 44666663 4556666554
No 138
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=22.18 E-value=52 Score=19.64 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=19.9
Q ss_pred CCceEEEecCCceeEeEEEcCCC
Q 033241 60 QGAKMLVPLTASLYVPGTLDDAR 82 (124)
Q Consensus 60 ~~~e~lVplg~~~yv~a~I~~~~ 82 (124)
.|..++..-+.|.|.+|+|...+
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~ 38 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKIN 38 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCEEEEEEccCcEEEeEEEEEc
Confidence 57889999999999999998643
No 139
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.99 E-value=96 Score=18.55 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCCceEEEecCCceeEeEEEcCCC----eEEEEccCc
Q 033241 59 PQGAKMLVPLTASLYVPGTLDDAR----KVLVDIGTG 91 (124)
Q Consensus 59 ~~~~e~lVplg~~~yv~a~I~~~~----~VlV~lG~g 91 (124)
.++.++|..=+.|.|..|+|...+ .-+|.-+.|
T Consensus 11 ~eGqdVLarWsDGlfYlGtV~kV~~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 11 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDD 47 (68)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETTT
T ss_pred ccCCEEEEEecCCcEEEeEEEEEecCCcEEEEEEccC
Confidence 367899999999999999998644 345544443
No 140
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=21.91 E-value=1.5e+02 Score=18.23 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 24 TDLEVNLLQDSLNNIRTATSRLES 47 (124)
Q Consensus 24 l~~ei~~l~~~~~~L~~~~~~~~~ 47 (124)
|..+++.++..+..|+.....+.+
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333333
No 141
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=21.80 E-value=1.2e+02 Score=17.10 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 24 TDLEVNLLQDSLNNIRTATSRLESAS 49 (124)
Q Consensus 24 l~~ei~~l~~~~~~L~~~~~~~~~~~ 49 (124)
++.++..|.+.+..-+.++.++....
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~~g~ 27 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLSNGV 27 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556555555555555554443
No 142
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=21.75 E-value=53 Score=21.27 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=26.6
Q ss_pred ceEEEecCCc------eeEeEEEcCCCeEEEEccCceeeecCHHHHHHHHH
Q 033241 62 AKMLVPLTAS------LYVPGTLDDARKVLVDIGTGYFVEKTMDEGKDYCE 106 (124)
Q Consensus 62 ~e~lVplg~~------~yv~a~I~~~~~VlV~lG~g~~vE~~~~eA~~~l~ 106 (124)
.-..|.+++. .+++..+..-+.|||++|.-.- -.+.++|.+.++
T Consensus 38 ~~A~Vd~~Gv~reV~l~Lv~e~~~vGDyVLVHvGfAi~-kIDeeeA~etl~ 87 (103)
T 3d3r_A 38 QSVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHIGFVMN-KIDRNDALQSLE 87 (103)
T ss_dssp TEEEEEETTEEEEEECTTBSSCCCTTCEEEEEEEEEEE-EECHHHHHHHHH
T ss_pred CEEEEEcCCEEEEEEEEeecCCCCCCCEEEEeechhhh-hCCHHHHHHHHH
Confidence 3456666531 1344334457899999874333 257888887765
No 143
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=21.63 E-value=1.1e+02 Score=17.86 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Q 033241 8 GMEKMSVEQLKAIKEQTDLEVNLLQD 33 (124)
Q Consensus 8 ~~~~l~le~L~~~~~~l~~ei~~l~~ 33 (124)
.|-.+|.++|......+..|+-+|.-
T Consensus 5 elr~~s~~EL~~~l~elk~ELf~LR~ 30 (67)
T 2zjr_V 5 EMRNLQATDFAKEIDARKKELMELRF 30 (67)
T ss_dssp TTTTSCHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999988877753
No 144
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.60 E-value=1.2e+02 Score=17.01 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 28 VNLLQDSLNNIRTATSRLESASTAL 52 (124)
Q Consensus 28 i~~l~~~~~~L~~~~~~~~~~~~~l 52 (124)
++.|..++..|......+..-+..+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333
No 145
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Probab=21.15 E-value=1.7e+02 Score=22.62 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=25.9
Q ss_pred EEcCCCeEEEEccC---ceeeecCH-----HHHHHHHHHHHHHHHHHHH
Q 033241 77 TLDDARKVLVDIGT---GYFVEKTM-----DEGKDYCERKINLLKSNFD 117 (124)
Q Consensus 77 ~I~~~~~VlV~lG~---g~~vE~~~-----~eA~~~l~~r~~~l~~~i~ 117 (124)
.+.+.+-|++++|+ ||+...+. ++..++++-=.+.++.-++
T Consensus 122 ~L~~GDlV~ID~G~~~~GY~sD~tRT~~v~~~~~~l~~av~eA~~aai~ 170 (360)
T 2nw5_A 122 VLKEDDVLKIDFGTHSDGRIMDSAFTVAFKENLEPLLVAAREGTETGIK 170 (360)
T ss_dssp BCCTTCEEEEEEEEEETTEEEEEEEEEECCGGGHHHHHHHHHHHHHHHH
T ss_pred CcCCCCEEEEEEEEEECCEEEEEEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 46677889999996 77776654 4555555554444444443
No 146
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.10 E-value=1.1e+02 Score=16.23 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 033241 29 NLLQDSLNNI 38 (124)
Q Consensus 29 ~~l~~~~~~L 38 (124)
..++..+..|
T Consensus 18 ~~l~~kl~~L 27 (38)
T 2l5g_A 18 LKLEEKLLAL 27 (38)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 147
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=20.68 E-value=2e+02 Score=19.32 Aligned_cols=38 Identities=8% Similarity=0.155 Sum_probs=19.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 033241 5 KGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNN-IRTATS 43 (124)
Q Consensus 5 ~~i~~~~l~le~L~~~~~~l~~ei~~l~~~~~~-L~~~~~ 43 (124)
......+-|+++|.+++...+ .++..++++.. |..-++
T Consensus 10 ~a~~pptysp~~i~~Iq~y~~-~i~~ar~Rl~e~L~~lI~ 48 (133)
T 3ls0_A 10 QVEIPTTYSPEKIAQLQVYVN-PIAVARDGMEKRLQGLIA 48 (133)
T ss_dssp ------CCCHHHHHHHHHHHH-HHHHHHHHHHHTHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHH-HHHHHHHHhHHHHHHHhh
Confidence 344568889999988766554 34455555555 444443
No 148
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.58 E-value=1.4e+02 Score=17.74 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033241 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLES 47 (124)
Q Consensus 14 le~L~~~~~~l~~ei~~l~~~~~~L~~~~~~~~~ 47 (124)
.+++......-+..+..|+..+..=...+.+++.
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~ 46 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKR 46 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555566665544444444444433
No 149
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=20.45 E-value=1.4e+02 Score=19.71 Aligned_cols=21 Identities=5% Similarity=0.227 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033241 27 EVNLLQDSLNNIRTATSRLES 47 (124)
Q Consensus 27 ei~~l~~~~~~L~~~~~~~~~ 47 (124)
+++.|+.++..|+..+..+.+
T Consensus 24 ~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 24 KLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555555554
No 150
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.42 E-value=1e+02 Score=17.17 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 033241 103 DYCERKINLLKSNFDQLIE 121 (124)
Q Consensus 103 ~~l~~r~~~l~~~i~~l~~ 121 (124)
+|.+|.+..|++.|+.|+.
T Consensus 8 efAERsV~KLek~ID~LEd 26 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLED 26 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777653
No 151
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=20.33 E-value=1e+02 Score=23.74 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033241 26 LEVNLLQDSLNNIRTATSR 44 (124)
Q Consensus 26 ~ei~~l~~~~~~L~~~~~~ 44 (124)
..++.++.++.+|+..+..
T Consensus 25 ~~l~~~~~ki~~L~~~i~~ 43 (319)
T 1fzc_C 25 EIYNSNNQKIVNLKEKVAQ 43 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433333
No 152
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=20.16 E-value=2.2e+02 Score=22.59 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.9
Q ss_pred CCceEEEecCCceeEeEEE
Q 033241 60 QGAKMLVPLTASLYVPGTL 78 (124)
Q Consensus 60 ~~~e~lVplg~~~yv~a~I 78 (124)
...--.++||.++++.-.|
T Consensus 218 s~t~RRIaLgn~vSl~IeV 236 (381)
T 3k1l_B 218 KHKTRLFPLKDRVYLKLTI 236 (381)
T ss_dssp TCCEEEEEEETTEEEEEEE
T ss_pred CCceEEEEeCCCeEEEEEe
Confidence 4567889999999999999
Done!