BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033242
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 54 DINSARFLWKSIPSTIKDSRAEVV 77
DIN RF W PST D+ + VV
Sbjct: 8 DINGVRFTWNVFPSTRSDANSNVV 31
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active
Fragment Of Sec31
Length = 772
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 54 DINSARFLWKSIPSTIKDSRAEVV 77
DIN RF W PST D+ + VV
Sbjct: 12 DINGVRFTWNVFPSTRSDANSNVV 35
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 33 GIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKD 71
GI+F+D+ YV + + V+ + +W+ I + IKD
Sbjct: 215 GILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKD 253
>pdb|3V9I|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
Length = 566
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 7 TDALASKSYEKI---ADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWK 63
T LAS + +I A + +++ V A+G +F D HL G + + + + LWK
Sbjct: 240 TAMLASYAVYRILREAGLPPNIIQFVPADGPLFGDTVTSSEHLCGINFTGSVPTFKHLWK 299
Query: 64 SI 65
+
Sbjct: 300 QV 301
>pdb|3V9G|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
Length = 566
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 7 TDALASKSYEKI---ADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWK 63
T LAS + +I A + +++ V A+G +F D HL G + + + + LWK
Sbjct: 240 TAMLASYAVYRILREAGLPPNIIQFVPADGPLFGDTVTSSEHLCGINFTGSVPTFKHLWK 299
Query: 64 SI 65
+
Sbjct: 300 QV 301
>pdb|3V9H|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
Length = 566
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 7 TDALASKSYEKI---ADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWK 63
T LAS + +I A + +++ V A+G +F D HL G + + + + LWK
Sbjct: 240 TAMLASYAVYRILREAGLPPNIIQFVPADGPLFGDTVTSSEHLCGINFTGSVPTFKHLWK 299
Query: 64 SI 65
+
Sbjct: 300 QV 301
>pdb|2GK4|A Chain A, The Crystal Structure Of The Dna/pantothenate Metabolism
Flavoprotein From Streptococcus Pneumoniae
pdb|2GK4|B Chain B, The Crystal Structure Of The Dna/pantothenate Metabolism
Flavoprotein From Streptococcus Pneumoniae
Length = 232
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 4 SPLTDALASKSYE-KIA--DICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
S L + L+ ++++ KI+ D L LK + I EW IHL+G+ + D+
Sbjct: 112 SNLKEFLSKQNHQAKISSTDEVQVLFLKKTPKIISLVKEWNPTIHLIGFKLLVDVTEDHL 171
Query: 61 LWKSIPSTIKDSRAEVVAAWKIGQ 84
+ + S IK+ +A+++ A + Q
Sbjct: 172 VDIARKSLIKN-QADLIIANDLTQ 194
>pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2-
Enoyl-coa Isomerase
pdb|1SG4|B Chain B, Crystal Structure Of Human Mitochondrial Delta3-delta2-
Enoyl-coa Isomerase
pdb|1SG4|C Chain C, Crystal Structure Of Human Mitochondrial Delta3-delta2-
Enoyl-coa Isomerase
Length = 260
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 13/44 (29%)
Query: 80 WKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGACTKSSC 123
WK Q LW R Y Q LV+A +GAC C
Sbjct: 83 WKAVQELWLRLY-------------QSNLVLVSAINGACPAGGC 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,793,848
Number of Sequences: 62578
Number of extensions: 140103
Number of successful extensions: 387
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 11
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)