Query 033242
Match_columns 124
No_of_seqs 104 out of 115
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 19:09:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rz4_A Eukaryotic translation 98.2 6.6E-07 2.3E-11 69.6 3.4 67 50-123 77-143 (226)
2 4b0z_A RPN12, 26S proteasome r 98.2 7.8E-05 2.7E-09 57.4 14.0 83 40-123 98-181 (229)
3 4b4t_T 26S proteasome regulato 96.2 0.023 7.7E-07 44.9 8.5 84 40-123 104-190 (274)
4 3t5v_A Nuclear mRNA export pro 90.9 1.1 3.9E-05 35.9 8.4 86 33-122 109-210 (316)
5 3dai_A ATPase family AAA domai 62.9 16 0.00056 25.0 5.4 71 1-77 51-127 (130)
6 4g26_A Pentatricopeptide repea 61.6 31 0.0011 28.4 7.7 87 6-99 112-199 (501)
7 3d7c_A General control of amin 46.2 7.4 0.00025 26.0 1.2 29 1-29 48-76 (112)
8 2i7k_A Bromodomain-containing 45.7 7.3 0.00025 26.5 1.2 29 1-29 49-77 (117)
9 3mb4_A Protein polybromo-1; PB 44.7 7.9 0.00027 26.3 1.2 29 1-29 62-90 (124)
10 4g26_A Pentatricopeptide repea 44.5 67 0.0023 26.4 7.1 66 5-75 146-211 (501)
11 3p1f_A CREB-binding protein; s 43.8 8.7 0.0003 25.8 1.3 29 1-29 55-83 (119)
12 2dat_A Possible global transcr 43.8 8.3 0.00028 26.3 1.2 29 1-29 60-88 (123)
13 2d9e_A Peregrin; four-helix bu 43.4 8.6 0.00029 26.2 1.2 29 1-29 48-76 (121)
14 3qml_C Protein SLS1, nucleotid 43.4 1.2E+02 0.0043 24.3 8.3 99 2-118 23-127 (315)
15 2ouo_A HUNK1 protein, bromodom 42.4 9.3 0.00032 26.3 1.3 29 1-29 68-96 (130)
16 1e6i_A Transcriptional activat 42.1 9.5 0.00033 25.9 1.3 29 1-29 54-82 (121)
17 3nxb_A CAT eye syndrome critic 42.0 9.7 0.00033 25.5 1.3 29 1-29 57-85 (116)
18 2oss_A HUNK1 protein, bromodom 41.9 9.6 0.00033 26.2 1.3 29 1-29 64-92 (127)
19 3g0l_A Hwalp4, bromodomain adj 41.2 9.8 0.00033 25.5 1.2 29 1-29 54-82 (117)
20 3jvl_A Bromodomain-containing 39.9 11 0.00036 25.4 1.2 29 1-29 55-83 (120)
21 3iu5_A Protein polybromo-1; PB 39.3 11 0.00037 25.3 1.2 29 1-29 52-80 (116)
22 3k2j_A Protein polybromo-1; PB 39.2 11 0.00038 26.0 1.3 29 1-29 64-92 (130)
23 3mb3_A PH-interacting protein; 38.4 12 0.0004 25.8 1.3 29 1-29 62-90 (135)
24 3tlp_A Protein polybromo-1; PB 37.5 12 0.00042 26.2 1.3 29 1-29 72-100 (150)
25 2grc_A Probable global transcr 37.2 12 0.00042 25.6 1.2 29 1-29 59-87 (129)
26 3rcw_A Bromodomain-containing 37.2 13 0.00043 25.6 1.3 29 1-29 54-82 (135)
27 3q2e_A Bromodomain and WD repe 36.8 13 0.00044 25.2 1.3 29 1-29 51-79 (123)
28 3mqm_A Probable histone-lysine 36.2 11 0.00039 25.5 1.0 29 1-29 56-84 (126)
29 3ljw_A Protein polybromo-1; al 36.1 12 0.0004 25.3 1.0 29 1-29 55-83 (120)
30 3hme_A Bromodomain-containing 36.0 13 0.00045 25.3 1.2 29 1-29 54-82 (123)
31 2ri7_A Nucleosome-remodeling f 35.2 13 0.00044 26.4 1.1 29 1-29 113-141 (174)
32 4alg_A Bromodomain-containing 33.4 16 0.00053 26.0 1.3 29 1-29 75-103 (154)
33 2wpv_A GET4, UPF0363 protein Y 33.4 74 0.0025 25.2 5.4 74 33-108 182-275 (312)
34 2dkw_A Hypothetical protein KI 32.4 12 0.00041 26.0 0.5 29 1-29 48-76 (131)
35 4b4t_P 26S proteasome regulato 32.0 2E+02 0.0069 23.2 8.4 87 10-98 148-241 (445)
36 2kjg_A Archaeal protein SSO690 31.9 23 0.00079 23.9 1.9 27 3-29 9-35 (99)
37 3qwp_A SET and MYND domain-con 31.7 2E+02 0.0068 23.0 10.4 114 4-117 292-422 (429)
38 3uv4_A Second bromodomain of h 31.4 17 0.0006 25.9 1.3 29 1-29 71-99 (158)
39 3lpz_A GET4 (YOR164C homolog); 31.1 1.3E+02 0.0045 24.1 6.6 63 37-100 185-268 (336)
40 3mkq_B Coatomer subunit alpha; 29.9 1.2E+02 0.004 22.2 5.7 22 42-63 92-113 (177)
41 3cqc_A Nuclear pore complex pr 29.7 26 0.00089 27.2 2.1 31 40-70 34-65 (270)
42 2xev_A YBGF; tetratricopeptide 29.1 96 0.0033 18.6 6.8 88 6-96 9-97 (129)
43 2ion_A PDCD4, programmed cell 27.5 98 0.0034 21.7 4.7 45 15-67 86-130 (152)
44 3lqh_A Histone-lysine N-methyl 27.3 21 0.00073 26.3 1.2 29 1-29 105-133 (183)
45 2ff4_A Probable regulatory pro 27.2 2E+02 0.0069 22.6 7.1 70 6-81 178-252 (388)
46 3fkm_X Signaling protein; brom 25.0 23 0.00078 25.4 1.0 29 1-29 64-92 (166)
47 2yyn_A Transcription intermedi 24.8 27 0.00094 24.0 1.3 29 1-29 60-90 (135)
48 4b4t_R RPN7, 26S proteasome re 24.3 56 0.0019 26.3 3.2 30 69-98 279-308 (429)
49 2q2k_A Hypothetical protein; p 23.2 1.1E+02 0.0039 18.8 3.8 31 88-118 33-63 (70)
50 2ro1_A Transcription intermedi 23.1 29 0.001 25.3 1.3 29 1-29 115-146 (189)
51 3o36_A Transcription intermedi 22.7 30 0.001 24.8 1.2 29 1-29 121-151 (184)
52 3qww_A SET and MYND domain-con 22.7 3E+02 0.01 22.1 9.7 105 11-115 310-431 (433)
53 3fap_B FRAP, FKBP12-rapamycin 22.5 1.7E+02 0.0058 19.2 6.9 71 11-89 22-92 (94)
54 2nsz_A Programmed cell death p 21.1 1.4E+02 0.0049 20.1 4.5 41 15-62 84-124 (129)
55 3qky_A Outer membrane assembly 20.9 2.1E+02 0.0073 19.7 7.0 80 6-88 22-101 (261)
No 1
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=98.21 E-value=6.6e-07 Score=69.64 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=59.0
Q ss_pred HHhhchhhHHHHHhhCChhhhhccHHHHHHHHHHHHHHccChHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhcC
Q 033242 50 YYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGACTKSSC 123 (124)
Q Consensus 50 Ll~~Dl~~AR~LwkRiP~~lk~~~~el~~iw~l~~~lw~rdy~~vy~al~~~~Ws~~~~~lv~~l~~~~r~rt~ 123 (124)
+...|.+.+++| ||++++ .+++++.+|.|++.||+++|++||+++++ +..+.+.|..|.+.+|++.+
T Consensus 77 ~p~~DF~~~l~L---Ip~~~~-~~~~I~~i~~L~~~L~~~~y~~fW~~l~~---~~~l~~~i~gf~dsIR~~I~ 143 (226)
T 1rz4_A 77 LPHTDFTLCKCM---IDQAHQ-EERPIRQILYLGDLLETCHFQAFWQALDE---NMDLLEGITGFEDSVRKFIC 143 (226)
T ss_dssp TTSTHHHHHHHT---SCHHHH-TSTTHHHHHHHHHHHHTTCHHHHHHHSCT---TCHHHHTSTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHh---CChhhh-cCHHHHHHHHHHHHHHcCCHHHHHHHHhc---ChhHHHHHhHHHHHHHHHHH
Confidence 347899999999 899997 68999999999999999999999999986 36788888889999988754
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.16 E-value=7.8e-05 Score=57.43 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHhhchhhHHHHHhhCChh-hhhccHHHHHHHHHHHHHHccChHHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 033242 40 WPYVIHLLGYYYVNDINSARFLWKSIPST-IKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGAC 118 (124)
Q Consensus 40 ~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~-lk~~~~el~~iw~l~~~lw~rdy~~vy~al~~~~Ws~~~~~lv~~l~~~~ 118 (124)
-+.+-+|+.+|.+|++.+-.-...++|.. +...||-++-..+|-+++++.||..|++..++.++. ....+|..|.+.+
T Consensus 98 e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~-~~~~~~~~l~~~v 176 (229)
T 4b0z_A 98 LVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFP-EFSYFMKIVMSMV 176 (229)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCG-GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccc-hHHHHHHHHHHHH
Confidence 45677788889999999999899999864 444689999999999999999999999999987664 4578999999999
Q ss_pred hhhcC
Q 033242 119 TKSSC 123 (124)
Q Consensus 119 r~rt~ 123 (124)
|.+.+
T Consensus 177 R~~~l 181 (229)
T 4b0z_A 177 RNEIA 181 (229)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.023 Score=44.90 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHhhchhhHHHHHhhCChhhhh--ccHHHHHHHHHHHHHHccChHHHHHHhhCCCCC-HHHHHHHHHHHH
Q 033242 40 WPYVIHLLGYYYVNDINSARFLWKSIPSTIKD--SRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWS-QEAQALVAAFSG 116 (124)
Q Consensus 40 ~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~--~~~el~~iw~l~~~lw~rdy~~vy~al~~~~Ws-~~~~~lv~~l~~ 116 (124)
-+.+-+|+-+|.+|++.+=.-...++|...++ .||-++-...|-+++.+.+|..||+.++..+.+ +....+|..|.+
T Consensus 104 e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~ 183 (274)
T 4b4t_T 104 KLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKS 183 (274)
T ss_dssp HHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 45666777777899999998899999965432 589999999999999999999999999988875 566889999999
Q ss_pred HHhhhcC
Q 033242 117 ACTKSSC 123 (124)
Q Consensus 117 ~~r~rt~ 123 (124)
..|.+.+
T Consensus 184 ~iR~~a~ 190 (274)
T 4b4t_T 184 AIRDEIA 190 (274)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887643
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=90.95 E-value=1.1 Score=35.88 Aligned_cols=86 Identities=12% Similarity=-0.025 Sum_probs=59.0
Q ss_pred CCcCCCc-hhHHHHHHHHHHhhchhhHHHHHhhCChhhhhccHHHHHHHHHHHHHH---------------ccChHHHHH
Q 033242 33 GIVFQDE-WPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLW---------------TRDYAGVYD 96 (124)
Q Consensus 33 g~~~~~~-~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~~~~el~~iw~l~~~lw---------------~rdy~~vy~ 96 (124)
|+..|.. -+.+-+++.+|...|+. -.-.++|.++++ +|.++-...|-+++- .++|..+|+
T Consensus 109 ~~~~~ne~EF~aY~lL~~l~~~~~~---~~l~~Lp~~i~~-~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFr 184 (316)
T 3t5v_A 109 GGTCPNEAEFRAYALLSKIRDPQYD---ENIQRLPKHIFQ-DKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQ 184 (316)
T ss_dssp TCCCTTHHHHHHHHHHHSTTCTHHH---HHHTTSCHHHHT-SHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhccchHH---HHHHhCCHHHhc-CHHHHHHHHHHHHHHhcccccccccccccccchHHHHHH
Confidence 4434432 45665666666544432 345789999995 799999999888764 268999999
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHhhhc
Q 033242 97 AIRGFDWSQEAQALVAAFSGACTKSS 122 (124)
Q Consensus 97 al~~~~Ws~~~~~lv~~l~~~~r~rt 122 (124)
.+++..=|-....+|..+....|.+.
T Consensus 185 L~~~~~~pyL~aclle~~~~~vR~~A 210 (316)
T 3t5v_A 185 LMQSPSLPLLMGFFLQMHLTDIRFYA 210 (316)
T ss_dssp HHTCTTSCHHHHHHHGGGHHHHHHHH
T ss_pred HHhccCCChHHHHHHHHHHHHHHHHH
Confidence 99863345566777777777777654
No 5
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=62.89 E-value=16 Score=24.97 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=45.0
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhhhhc-----CCcCCCchhHHHHHHHHHHhhchhhHHHHH-hhCChhhhhccH
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKVAAE-----GIVFQDEWPYVIHLLGYYYVNDINSARFLW-KSIPSTIKDSRA 74 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~~~~-----g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~Lw-kRiP~~lk~~~~ 74 (124)
||++.|+.-+..|.|..+.++..+..|-. .| |..++.. ...+-.+..+.+.. +-+. +.+.+++.....
T Consensus 51 mdL~tI~~kl~~~~Y~~~~~f~~D~~li~-~Na~~yN~~~s~~~--~~i~~~A~~L~~~~---~~~i~~el~~~~~~~ce 124 (130)
T 3dai_A 51 MDLSSVISKIDLHKYLTVKDYLRDIDLIC-SNALEYNPDRDPGD--RLIRHRACALRDTA---YAIIKEELDEDFEQLCE 124 (130)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH-HHHHHHCCSSSHHH--HHHHHHHHHHHHHH---HHHHHHHSCHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHH-HHHHHHCCCCChhH--HHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHH
Confidence 89999999999999999999999999886 33 3322211 23333444444332 2333 366666665555
Q ss_pred HHH
Q 033242 75 EVV 77 (124)
Q Consensus 75 el~ 77 (124)
+++
T Consensus 125 ~i~ 127 (130)
T 3dai_A 125 EIQ 127 (130)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=61.56 E-value=31 Score=28.40 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=55.8
Q ss_pred HHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCChhhhhccHHHHHHHHHHHH
Q 033242 6 LTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQH 85 (124)
Q Consensus 6 i~~~~~~~~~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~~~~el~~iw~l~~~ 85 (124)
|..+...|++++-..+.+++.- .|+. |+..-|..++-+|.-.+++..|.-++++|...=- .|.....-.+..+
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~----~g~~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~--~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKA----FGIQ-PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV--VPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----TTCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--CCCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH----cCCC-CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHH
Confidence 5667778888888888777652 3543 5666799999999999999999999988755322 2333333334433
Q ss_pred HH-ccChHHHHHHhh
Q 033242 86 LW-TRDYAGVYDAIR 99 (124)
Q Consensus 86 lw-~rdy~~vy~al~ 99 (124)
.- .++...+++.++
T Consensus 185 ~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 185 SMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHH
Confidence 33 235555554443
No 7
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=46.23 E-value=7.4 Score=25.99 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-+..|.|..+.++..+.+|-.
T Consensus 48 mdL~tI~~kl~~~~Y~s~~~f~~Dv~li~ 76 (112)
T 3d7c_A 48 IDLKTMTERLRSRYYVTRKLFVADLQRVI 76 (112)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 8
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=45.69 E-value=7.3 Score=26.51 Aligned_cols=29 Identities=28% Similarity=0.627 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-+.+|.|..+.++..+..|-.
T Consensus 49 MDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~ 77 (117)
T 2i7k_A 49 MDFSTMKEKIKNNDYQSIEELKDNFKLMC 77 (117)
T ss_dssp CCHHHHHHHHTTTSCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999986
No 9
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=44.73 E-value=7.9 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.527 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-+..+.|..+.+++.+..|-.
T Consensus 62 mdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 90 (124)
T 3mb4_A 62 MDMEKIRSHMMANKYQDIDSMVEDFVMMF 90 (124)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 10
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=44.54 E-value=67 Score=26.36 Aligned_cols=66 Identities=8% Similarity=0.028 Sum_probs=52.6
Q ss_pred hHHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCChhhhhccHH
Q 033242 5 PLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAE 75 (124)
Q Consensus 5 ~i~~~~~~~~~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~~~~e 75 (124)
-|..+...|++++...+.+++.- .|+. |+..-|..++-+|.-.+++..|.-+.+++-+...+-++.
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~----~G~~-Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVE----SEVV-PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----TTCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh----cCCC-CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 36677788999998888887752 3553 666679999999999999999999999997776654443
No 11
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=43.79 E-value=8.7 Score=25.84 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-+..|.|..+.++..+..|-.
T Consensus 55 mdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 83 (119)
T 3p1f_A 55 MDLSTIKRKLDTGQYQEPWQYVDDVWLMF 83 (119)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 12
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.75 E-value=8.3 Score=26.25 Aligned_cols=29 Identities=24% Similarity=0.586 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|+.-|..+.|..+.++..+.+|-.
T Consensus 60 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 60 VDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999886
No 13
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.45 E-value=8.6 Score=26.20 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|+.-+..+.|..+.++..+.+|-.
T Consensus 48 mdL~tI~~kl~~~~Y~s~~ef~~D~~li~ 76 (121)
T 2d9e_A 48 MDFFTMKQNLEAYRYLNFDDFEEDFNLIV 76 (121)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 14
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=43.36 E-value=1.2e+02 Score=24.33 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=60.1
Q ss_pred CchhHHHHHhcc------CHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCChhhhhccHH
Q 033242 2 DFSPLTDALASK------SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAE 75 (124)
Q Consensus 2 ~~~~i~~~~~~~------~~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~~~~e 75 (124)
||-.|++++.+| |++.+-..+|.+|=- ..+..|+.=+..| .-++-.+=..-+..|..+++-
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~El--------SHDi~~G~KI~~~--ef~lL~nL~~~~~~~~~~rE~--- 89 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEF--------AHDYKHGYKIITH--EFALLANLSLNENLPLTLREL--- 89 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGG--------TTSHHHHHHHHHH--HHHHHHHHHHCTTSCHHHHHH---
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHh--------hhhHHhhhHHHhC--cHHHHHHHHhhccCChhHHHH---
Confidence 578899999999 888888888887722 2345666666553 112111111223467776642
Q ss_pred HHHHHHHHHHHHccChHHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 033242 76 VVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGAC 118 (124)
Q Consensus 76 l~~iw~l~~~lw~rdy~~vy~al~~~~Ws~~~~~lv~~l~~~~ 118 (124)
+.=-||-||-|+ |.+-+.+.. .|+.-+..+...+.+.+
T Consensus 90 --aarII~ssLRNN--P~Al~~V~~-~~p~fv~~lf~~L~~~~ 127 (315)
T 3qml_C 90 --STRVITSCLRNN--PPVVEFINE-SFPNFKSKIMAALSNLN 127 (315)
T ss_dssp --HHHHHHHHHTTC--HHHHHHHHH-HCTTHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHccC--HHHHHHHHH-hChhHHHHHHHHHHHHh
Confidence 233345555433 555555544 69999988888877643
No 15
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=42.38 E-value=9.3 Score=26.33 Aligned_cols=29 Identities=24% Similarity=0.467 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|+.-|..|.|..+-++.++..|-.
T Consensus 68 mDL~tI~~kl~~~~Y~s~~ef~~Dv~li~ 96 (130)
T 2ouo_A 68 MDMSTIKSKLEAREYRDAQEFGADVRLMF 96 (130)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999886
No 16
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=42.10 E-value=9.5 Score=25.91 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|+.-+.+|.|..+.++..+..|-.
T Consensus 54 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 82 (121)
T 1e6i_A 54 MDLSTMEIKLESNKYQKMEDFIYDARLVF 82 (121)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999986
No 17
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=41.99 E-value=9.7 Score=25.49 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=27.3
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|..-+.+|.|..+.++..+.+|..
T Consensus 57 mdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 85 (116)
T 3nxb_A 57 MDISSMEKKLNGGLYCTKEEFVNDMKTMF 85 (116)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999885
No 18
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=41.92 E-value=9.6 Score=26.16 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|+.-|.+|.|..+-++..+..|-.
T Consensus 64 mdL~tI~~kl~~~~Y~s~~ef~~D~~li~ 92 (127)
T 2oss_A 64 MDMGTIKKRLENNYYWNAQECIQDFNTMF 92 (127)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999886
No 19
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=41.24 E-value=9.8 Score=25.51 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=27.3
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-|..|.|..+.++..+..|-.
T Consensus 54 mdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 82 (117)
T 3g0l_A 54 MDFSTIREKLSSGQYPNLETFALDVRLVF 82 (117)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 20
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=39.85 E-value=11 Score=25.45 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=27.4
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-|.+|.|..+.++..+..|-.
T Consensus 55 mdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 83 (120)
T 3jvl_A 55 MDMSTIKSKLESREYRDAQEFGADVRLMF 83 (120)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 21
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=39.26 E-value=11 Score=25.26 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=27.4
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-+..+.|..+.++..+..|-.
T Consensus 52 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 80 (116)
T 3iu5_A 52 IDLMKIQQKLKMEEYDDVNLLTADFQLLF 80 (116)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 22
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=39.25 E-value=11 Score=26.02 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-|.++.|..+.++..+..|-.
T Consensus 64 MdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (130)
T 3k2j_A 64 ISLQQIRTKLKNQEYETLDHLECDLNLMF 92 (130)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 23
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=38.39 E-value=12 Score=25.79 Aligned_cols=29 Identities=31% Similarity=0.684 Sum_probs=27.4
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|..-|..|.|..+.++..+..|-.
T Consensus 62 mdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 90 (135)
T 3mb3_A 62 MDFATVRETLEAGNYESPMELCKDVRLIF 90 (135)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 24
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=37.55 E-value=12 Score=26.17 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|+.-|..+.|..+.+++.+..|-.
T Consensus 72 mdL~tI~~kl~~~~Y~s~~ef~~D~~li~ 100 (150)
T 3tlp_A 72 MDLKIIEHNIRNDKYAGEEGMIEDMKLMF 100 (150)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 25
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=37.24 E-value=12 Score=25.65 Aligned_cols=29 Identities=24% Similarity=0.576 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|+.-|..|.|..+.++..+..|-.
T Consensus 59 mdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 59 VDFKKIKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999886
No 26
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=37.17 E-value=13 Score=25.63 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-+..|.|..+.++..+..|-.
T Consensus 54 mdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 82 (135)
T 3rcw_A 54 MDFATMRKRLEAQGYKNLHEFEEDFDLII 82 (135)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 27
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=36.83 E-value=13 Score=25.20 Aligned_cols=29 Identities=28% Similarity=0.647 Sum_probs=27.4
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-|..|.|..+.++..+..|-.
T Consensus 51 mdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 79 (123)
T 3q2e_A 51 MDFGTVRETLDAGNYDSPLEFCKDIRLIF 79 (123)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 28
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=36.23 E-value=11 Score=25.53 Aligned_cols=29 Identities=10% Similarity=0.311 Sum_probs=27.3
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-+..|.|..+.++..+..|-.
T Consensus 56 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 84 (126)
T 3mqm_A 56 LDLITIEKQILTGYYKTVEAFDADMLKVF 84 (126)
T ss_dssp CCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 29
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=36.10 E-value=12 Score=25.33 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=27.3
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-|..|.|..+.++..+..|-.
T Consensus 55 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 55 IDLKTIAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp CCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 30
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=36.04 E-value=13 Score=25.27 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|..-+..|.|..+.++..+.+|-.
T Consensus 54 mdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 82 (123)
T 3hme_A 54 MDFGTMKDKIVANEYKSVTEFKADFKLMC 82 (123)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 31
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=35.24 E-value=13 Score=26.40 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=27.4
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|+.-|..|.|..+-++..+..|-.
T Consensus 113 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 141 (174)
T 2ri7_A 113 MDLATMEERVQRRYYEKLTEFVADMTKIF 141 (174)
T ss_dssp CCHHHHHHHHHTTCCCBHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999885
No 32
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=33.40 E-value=16 Score=26.00 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|+.-|..+.|..+.++..+..|-.
T Consensus 75 MDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 103 (154)
T 4alg_A 75 MDMGTIKRRLENNYYWAASECMQDFNTMF 103 (154)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999886
No 33
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=33.38 E-value=74 Score=25.18 Aligned_cols=74 Identities=8% Similarity=-0.005 Sum_probs=52.0
Q ss_pred CCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCChhhh--------------------hccHHHHHHHHHHHHHHccChH
Q 033242 33 GIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIK--------------------DSRAEVVAAWKIGQHLWTRDYA 92 (124)
Q Consensus 33 g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk--------------------~~~~el~~iw~l~~~lw~rdy~ 92 (124)
|-....+.+.+.-++-||..+++..|+.+....-+.+. .+.|.|.=+|-+..++-.++ .
T Consensus 182 ~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~~pllnF~~lLl~t~e~~~-~ 260 (312)
T 2wpv_A 182 IEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDYSDLNFLQLLLITCQTKD-K 260 (312)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEESSCHHHHHHHHHHHHHHHTC-H
T ss_pred CCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCccHHHHHHHHHHHhcCC-H
Confidence 54444457899999999999999999988765433221 13488888898888765444 6
Q ss_pred HHHHHhhCCCCCHHHH
Q 033242 93 GVYDAIRGFDWSQEAQ 108 (124)
Q Consensus 93 ~vy~al~~~~Ws~~~~ 108 (124)
.+|+.|+. ...+.++
T Consensus 261 ~lF~~L~~-~Y~~~L~ 275 (312)
T 2wpv_A 261 SYFLNLKN-HYLDFSQ 275 (312)
T ss_dssp HHHHHHHH-HCHHHHH
T ss_pred HHHHHHHH-HHHHHHH
Confidence 67888874 4555543
No 34
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.37 E-value=12 Score=25.98 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|..-+..|.|..+.++..+..|-.
T Consensus 48 mDL~tI~~kl~~~~Y~s~~~f~~D~~Li~ 76 (131)
T 2dkw_A 48 MDLSTVITKIDKHNYLTAKDFLKDIDLIC 76 (131)
T ss_dssp CCHHHHHHHHHTTCCCSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 35
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.02 E-value=2e+02 Score=23.17 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=58.9
Q ss_pred HhccCHHHHHHHHHHHhhhhhhcCCcCCC--chhHHHHHHHHHHhhchhhHHHHHhhCChhhhh--ccHHHHHHHHHHHH
Q 033242 10 LASKSYEKIADICDDLMLKVAAEGIVFQD--EWPYVIHLLGYYYVNDINSARFLWKSIPSTIKD--SRAEVVAAWKIGQH 85 (124)
Q Consensus 10 ~~~~~~~~l~~~cE~~EL~~~~~g~~~~~--~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~--~~~el~~iw~l~~~ 85 (124)
.+.|+|.+.+.++.++-.++ .|...-. .-+|..-+=.|+-.+|...|+.+.+++-..... .+|+++........
T Consensus 148 e~~g~~~eA~~iL~~l~~Et--~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~ 225 (445)
T 4b4t_P 148 KEEGKIDEAADILCELQVET--YGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLV 225 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHH--CSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 46799999999999988775 4432111 146777888899999999999999998433322 24667665544332
Q ss_pred ---HHccChHHHHHHh
Q 033242 86 ---LWTRDYAGVYDAI 98 (124)
Q Consensus 86 ---lw~rdy~~vy~al 98 (124)
.-.|||-.+++..
T Consensus 226 ~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 226 KISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHCCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHH
Confidence 3457777655443
No 36
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=31.91 E-value=23 Score=23.93 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=22.4
Q ss_pred chhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 3 FSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 3 ~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|-+++..=..-|++.+-+++|+.|+++
T Consensus 9 FveLrkfKgkvd~~~v~~IL~eiE~~~ 35 (99)
T 2kjg_A 9 FVKLRQFKGKVNFNLVMQILDEIELDL 35 (99)
T ss_dssp HHHHHHHTCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 445666667789999999999999997
No 37
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=31.70 E-value=2e+02 Score=23.03 Aligned_cols=114 Identities=10% Similarity=0.062 Sum_probs=71.4
Q ss_pred hhHHHHHhccCHHHHHHHHHHHh-hhhhhcCCcCCCc-hhHHHHHHHHHHhhchhhHHHHHhhCChhhh----hccHHH-
Q 033242 4 SPLTDALASKSYEKIADICDDLM-LKVAAEGIVFQDE-WPYVIHLLGYYYVNDINSARFLWKSIPSTIK----DSRAEV- 76 (124)
Q Consensus 4 ~~i~~~~~~~~~~~l~~~cE~~E-L~~~~~g~~~~~~-~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk----~~~~el- 76 (124)
+.|.++-..|+|++....|++.- +....=|.-+|+. -.+..+..+|..+++..+|.-+.+|.=+-.+ ..+|.+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 45677888999999998887653 2211113333332 3467777889999999999988887644332 235554
Q ss_pred HHHHHHHHHHHcc-ChHHHHHHhhC---------CCCCHHHHHHHHHHHHH
Q 033242 77 VAAWKIGQHLWTR-DYAGVYDAIRG---------FDWSQEAQALVAAFSGA 117 (124)
Q Consensus 77 ~~iw~l~~~lw~r-dy~~vy~al~~---------~~Ws~~~~~lv~~l~~~ 117 (124)
..+.++|...|+. +|...-..++. .+-++.++.+...+.+.
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~ 422 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEEC 422 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 4566788877765 66653322221 35677777766655543
No 38
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=31.44 E-value=17 Score=25.92 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|+.-|..+.|..+.++..+..|-.
T Consensus 71 MDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 99 (158)
T 3uv4_A 71 MDLETIRKNISKHKYQSRESFLDDVNLIL 99 (158)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 39
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=31.07 E-value=1.3e+02 Score=24.12 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=43.0
Q ss_pred CCchhHHHHHHHHHHhhchhhHHHHH----hhC----Ch-h---h---------hhccHHHHHHHHHHHHHHccChHHHH
Q 033242 37 QDEWPYVIHLLGYYYVNDINSARFLW----KSI----PS-T---I---------KDSRAEVVAAWKIGQHLWTRDYAGVY 95 (124)
Q Consensus 37 ~~~~~Y~~~L~~yLl~~Dl~~AR~Lw----kRi----P~-~---l---------k~~~~el~~iw~l~~~lw~rdy~~vy 95 (124)
..+.|.+.-++-||+.+++..|+.+. +++ |. . + -.+.|.|.=+|-+..++- |+-..+|
T Consensus 185 e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q-~~~~~lF 263 (336)
T 3lpz_A 185 TAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQ-KGSPDLF 263 (336)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHH-SCCHHHH
T ss_pred cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHh-cCCHHHH
Confidence 34579999999999999999997753 222 22 0 0 012587888888887654 5556778
Q ss_pred HHhhC
Q 033242 96 DAIRG 100 (124)
Q Consensus 96 ~al~~ 100 (124)
+.|+.
T Consensus 264 ~~L~~ 268 (336)
T 3lpz_A 264 RQLKS 268 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 40
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=29.91 E-value=1.2e+02 Score=22.15 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhchhhHHHHHh
Q 033242 42 YVIHLLGYYYVNDINSARFLWK 63 (124)
Q Consensus 42 Y~~~L~~yLl~~Dl~~AR~Lwk 63 (124)
+..-+..+|+.||+.++--+.+
T Consensus 92 ~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 92 FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 7777888888888888766653
No 41
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=29.69 E-value=26 Score=27.20 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=23.1
Q ss_pred hhHHHHHHHH-HHhhchhhHHHHHhhCChhhh
Q 033242 40 WPYVIHLLGY-YYVNDINSARFLWKSIPSTIK 70 (124)
Q Consensus 40 ~~Y~~~L~~y-Ll~~Dl~~AR~LwkRiP~~lk 70 (124)
..++..|.=+ |..+.+..||-|.+|||.+.-
T Consensus 34 l~~~n~l~R~FL~~gkl~AAr~l~~rlp~~~i 65 (270)
T 3cqc_A 34 LKQGNAIMRKFLASKKHEAAKEVFVKIPQDSI 65 (270)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCTTHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHCChHHH
Confidence 3455555544 448899999999999999873
No 42
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=29.13 E-value=96 Score=18.57 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=50.5
Q ss_pred HHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCChhhhhccHHHHHHHHHHHH
Q 033242 6 LTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQH 85 (124)
Q Consensus 6 i~~~~~~~~~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~~~~el~~iw~l~~~ 85 (124)
-..+...|+|++-...+++.--. .|+....++ .+-.+-.+|+-.+|..+|.-..+++-..-............+|.+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~--~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL-YPNGVYTPN--ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CSSSTTHHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH-CCCCcccHH--HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34567899999988888765322 122111001 234444567788999999988877533222211113455667776
Q ss_pred HHc-cChHHHHH
Q 033242 86 LWT-RDYAGVYD 96 (124)
Q Consensus 86 lw~-rdy~~vy~ 96 (124)
..+ .++...-.
T Consensus 86 ~~~~g~~~~A~~ 97 (129)
T 2xev_A 86 QYGEGKNTEAQQ 97 (129)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcCCHHHHHH
Confidence 654 46666443
No 43
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.49 E-value=98 Score=21.71 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCCh
Q 033242 15 YEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPS 67 (124)
Q Consensus 15 ~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~ 67 (124)
|+.+++.+++++|.. |.-+-|..-+++..+.+++-+..|+-+ +|.
T Consensus 86 f~~vl~~ldDl~lDi-------P~A~~~la~~v~~ai~~g~l~~~~~~~-~p~ 130 (152)
T 2ion_A 86 YERIYNEIPDINLDV-------PHSYSVLERFVEECFQAGIISKQLRDL-CPS 130 (152)
T ss_dssp HHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTCSCHHHHHT-CTT
T ss_pred HHHHHHhChHhccCc-------cchHHHHHHHHHHHHHCCCCCHHHHHh-CCC
Confidence 777999999999885 445567888889999999999988877 776
No 44
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=27.34 E-value=21 Score=26.32 Aligned_cols=29 Identities=14% Similarity=0.438 Sum_probs=26.9
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-+.+|.|..+-++.++..+.-
T Consensus 105 mDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf 133 (183)
T 3lqh_A 105 LDLEGVKRKMDQGNYTSVLEFSDDIVKII 133 (183)
T ss_dssp CSHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999888875
No 45
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=27.23 E-value=2e+02 Score=22.55 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=51.4
Q ss_pred HHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCChhhhhc-----cHHHHHHH
Q 033242 6 LTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDS-----RAEVVAAW 80 (124)
Q Consensus 6 i~~~~~~~~~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~~-----~~el~~iw 80 (124)
+...++.|++++++..|+.+ +.. . + -+...|..++.+|.-.++-.+|.-...+.=..+.+. .|+++++.
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~-~~~--~--P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEAL-TFE--H--P-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHH--S--T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH-HHh--C--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45677889999999888876 332 1 1 133579999999999999999988887776666542 47777765
Q ss_pred H
Q 033242 81 K 81 (124)
Q Consensus 81 ~ 81 (124)
.
T Consensus 252 ~ 252 (388)
T 2ff4_A 252 E 252 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 46
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=24.98 E-value=23 Score=25.40 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|+.-|..+.|..+.++..+..|..
T Consensus 64 mDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (166)
T 3fkm_X 64 MSFSCIKTKLKKGQYAYPSEFVKDVQLIF 92 (166)
T ss_dssp CCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999886
No 47
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=24.84 E-value=27 Score=24.03 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=26.2
Q ss_pred CCchhHHHHHhc--cCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALAS--KSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~--~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|+.-|.. +.|..+.++..+..|-.
T Consensus 60 mDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif 90 (135)
T 2yyn_A 60 MDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 90 (135)
T ss_dssp CCHHHHHHHHHSSSCCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 999999999998 48999999999998885
No 48
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.28 E-value=56 Score=26.27 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=25.7
Q ss_pred hhhccHHHHHHHHHHHHHHccChHHHHHHh
Q 033242 69 IKDSRAEVVAAWKIGQHLWTRDYAGVYDAI 98 (124)
Q Consensus 69 lk~~~~el~~iw~l~~~lw~rdy~~vy~al 98 (124)
+.+..|++..+-.+..++++++|...+..+
T Consensus 279 ~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~ 308 (429)
T 4b4t_R 279 LISTTAALQSISSLTISLYASDYASYFPYL 308 (429)
T ss_dssp GGGSHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hccCChhHHHHHHHHHHHHhccHHHHHHHH
Confidence 445679999999999999999999988764
No 49
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=23.24 E-value=1.1e+02 Score=18.84 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=24.6
Q ss_pred ccChHHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 033242 88 TRDYAGVYDAIRGFDWSQEAQALVAAFSGAC 118 (124)
Q Consensus 88 ~rdy~~vy~al~~~~Ws~~~~~lv~~l~~~~ 118 (124)
..||+.+|.-+.+.+=+...+-|-++++...
T Consensus 33 kedypqifdflenvprgtktahirealrryi 63 (70)
T 2q2k_A 33 KEDYPQIFDFLENVPRGTKTAHIREALRRYI 63 (70)
T ss_dssp TTTSHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHcCCCccchHHHHHHHHHHH
Confidence 4699999999999888887777777766544
No 50
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=23.09 E-value=29 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=27.0
Q ss_pred CCchhHHHHHhcc---CHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASK---SYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~---~~~~l~~~cE~~EL~~ 29 (124)
|||+.|+.-|..+ .|..+-++..+..|.-
T Consensus 115 MDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif 146 (189)
T 2ro1_A 115 LDLTLIRARLQEKLSPPYSSPQEFAQDVGRMF 146 (189)
T ss_dssp CCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcCCCcccCCHHHHHHHHHHHH
Confidence 9999999999999 8999999999998885
No 51
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=22.73 E-value=30 Score=24.80 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=26.3
Q ss_pred CCchhHHHHHhc--cCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALAS--KSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~--~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|++-|.. +.|..+.++..+..|..
T Consensus 121 mdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~ 151 (184)
T 3o36_A 121 MDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 151 (184)
T ss_dssp CCHHHHHHHHHSTTCSCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 899999999998 78999999999988885
No 52
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=22.72 E-value=3e+02 Score=22.13 Aligned_cols=105 Identities=12% Similarity=-0.036 Sum_probs=64.9
Q ss_pred hccCHHHHHHHHHHH-hhhhhhcCCcCCCc-hhHHHHHHHHHHhhchhhHHHHHhhCChhhhh----ccHHHH-HHHHHH
Q 033242 11 ASKSYEKIADICDDL-MLKVAAEGIVFQDE-WPYVIHLLGYYYVNDINSARFLWKSIPSTIKD----SRAEVV-AAWKIG 83 (124)
Q Consensus 11 ~~~~~~~l~~~cE~~-EL~~~~~g~~~~~~-~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~----~~~el~-~iw~l~ 83 (124)
..|+|++....+++. ++....=|.-+|+. -.|..+-.+|.-+++..+|.-+.+|.=+-.+. .+|.+. .+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 456788877777653 33322225444443 45777888899999999999999987544432 256554 456777
Q ss_pred HHHHcc-ChHHHHHHhhC---------CCCCHHHHHHHHHHH
Q 033242 84 QHLWTR-DYAGVYDAIRG---------FDWSQEAQALVAAFS 115 (124)
Q Consensus 84 ~~lw~r-dy~~vy~al~~---------~~Ws~~~~~lv~~l~ 115 (124)
...|+. +|+..-..++. .+.++.++.+...+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 776644 66653332221 367777766655443
No 53
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=22.54 E-value=1.7e+02 Score=19.19 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=47.7
Q ss_pred hccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCChhhhhccHHHHHHHHHHHHHHcc
Q 033242 11 ASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTR 89 (124)
Q Consensus 11 ~~~~~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~~~~el~~iw~l~~~lw~r 89 (124)
..+|.++....++-+--.. ..|..+ ..--=+..-+-.||.+|+-..+|-... .....|..+|.+-..+++|
T Consensus 22 ~~~n~~~m~~~L~pLh~~l-~~~peT-----~~E~sF~~~fG~~L~~A~~~~~~y~~t--~~~~~l~qAWdiY~~V~~r 92 (94)
T 3fap_B 22 GERNVKGMFEVLEPLHAMM-ERGPQT-----LKETSFNQAYGRDLMEAQEWCRKYMKS--GNVKDLTQAWDLYYHVFRR 92 (94)
T ss_dssp TTCCHHHHHHHHHHHHHHH-HHCCCS-----HHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH-cCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHhc
Confidence 5678899888888764332 234433 222333446789999999999997554 2357899999987666543
No 54
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.09 E-value=1.4e+02 Score=20.06 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHH
Q 033242 15 YEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLW 62 (124)
Q Consensus 15 ~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~Lw 62 (124)
|+.+.+.+++++|.. |.-+-|-.-+++..+.+++-+..|+-
T Consensus 84 f~~v~~~l~Dl~lDi-------P~a~~~l~~~v~~ai~~g~l~~~~~~ 124 (129)
T 2nsz_A 84 YERIYNEIPDINLDV-------PHSYSVLERFVEECFQAGIISKQLRD 124 (129)
T ss_dssp HHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHhhChHhhcCc-------cchHHHHHHHHHHHHHCCCCCHHHHh
Confidence 677888888888885 44455777778888888887776654
No 55
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=20.87 E-value=2.1e+02 Score=19.70 Aligned_cols=80 Identities=8% Similarity=0.028 Sum_probs=49.2
Q ss_pred HHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCChhhhhccHHHHHHHHHHHH
Q 033242 6 LTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQH 85 (124)
Q Consensus 6 i~~~~~~~~~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~~~~el~~iw~l~~~ 85 (124)
-..++..|+|++-+..+++.--. .|+....++ .+-.+=.+|+-.+|...|.-..+++=..-..+.....+...+|.+
T Consensus 22 a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~--a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 22 AMEFYNQGKYDRAIEYFKAVFTY-GRTHEWAAD--AQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHGGG-CSCSTTHHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh-CCCCcchHH--HHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 34677899999999998876433 122110011 244444567888999999998887644333221223556777887
Q ss_pred HHc
Q 033242 86 LWT 88 (124)
Q Consensus 86 lw~ 88 (124)
...
T Consensus 99 ~~~ 101 (261)
T 3qky_A 99 YYK 101 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
Done!