Query 033242
Match_columns 124
No_of_seqs 104 out of 115
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 19:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033242.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033242hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qqea_ a.118.8.1 (A:) Vesicul 72.4 10 0.00075 26.1 8.2 95 8-103 167-265 (290)
2 d1ug3a1 a.118.1.14 (A:1235-142 54.7 7.1 0.00052 26.8 4.3 62 15-83 86-150 (193)
3 d3d7ca1 a.29.2.1 (A:731-832) G 44.4 3.9 0.00028 25.4 1.2 29 1-29 43-71 (102)
4 d1fi4a2 d.58.26.2 (A:191-393) 43.4 6.2 0.00045 28.2 2.4 26 2-27 43-68 (203)
5 d1e6ia_ a.29.2.1 (A:) GCN5 {Ba 38.1 5.7 0.00041 24.9 1.3 29 1-29 44-72 (111)
6 d3dwya1 a.29.2.1 (A:1084-1197) 36.5 6.2 0.00045 24.8 1.3 29 1-29 50-78 (114)
7 d1eqfa2 a.29.2.1 (A:1498-1625) 35.5 6.5 0.00048 25.4 1.3 29 1-29 51-79 (128)
8 d1hz4a_ a.118.8.2 (A:) Transcr 32.8 57 0.0042 20.9 6.0 59 8-67 21-79 (366)
9 d1eqfa1 a.29.2.1 (A:1359-1497) 32.3 7.9 0.00057 25.3 1.3 29 1-29 67-95 (139)
10 d1wuma1 a.29.2.1 (A:715-832) P 32.1 5.7 0.00041 25.3 0.5 29 1-29 54-82 (118)
11 d1zbpa1 e.61.1.1 (A:2-265) Hyp 30.7 58 0.0043 22.6 6.2 55 4-65 1-56 (264)
12 d1ny5a2 c.37.1.20 (A:138-384) 26.8 45 0.0032 23.1 4.8 50 68-117 172-229 (247)
13 d1jr3a1 a.80.1.1 (A:243-368) g 26.6 26 0.0019 21.4 3.1 43 78-120 6-49 (126)
14 d1k28a3 d.2.1.3 (A:130-345) Ta 25.9 80 0.0058 21.7 6.1 67 42-111 107-183 (216)
15 d2ff4a2 a.118.8.3 (A:105-283) 25.2 82 0.006 20.3 7.2 69 6-80 74-147 (179)
16 d1y6ia2 a.261.1.1 (A:83-233) M 23.9 46 0.0033 22.3 4.2 30 1-30 9-38 (151)
17 d1z3xa2 a.261.1.1 (A:88-235) G 23.7 44 0.0032 22.3 4.0 29 1-29 9-37 (148)
18 d2nsza1 a.118.1.14 (A:322-450) 23.3 62 0.0045 20.3 4.7 45 15-67 84-128 (129)
19 d1zavu1 a.108.1.1 (U:1-30) Rib 21.7 48 0.0035 16.3 2.9 26 1-26 1-26 (30)
20 d1yvia1 a.24.10.2 (A:2-143) Hi 21.3 92 0.0067 19.5 6.5 80 4-85 58-139 (142)
21 d1sr2a_ a.24.10.4 (A:) Sensor- 21.2 47 0.0035 20.2 3.6 65 3-69 48-112 (116)
No 1
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=72.41 E-value=10 Score=26.14 Aligned_cols=95 Identities=14% Similarity=0.025 Sum_probs=55.9
Q ss_pred HHHhccCHHHHHHHHHHHhhhhhhcCCcCCC-chhHHHHHHHHHHhhchhhHHHHHhhCCh---hhhhccHHHHHHHHHH
Q 033242 8 DALASKSYEKIADICDDLMLKVAAEGIVFQD-EWPYVIHLLGYYYVNDINSARFLWKSIPS---TIKDSRAEVVAAWKIG 83 (124)
Q Consensus 8 ~~~~~~~~~~l~~~cE~~EL~~~~~g~~~~~-~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~---~lk~~~~el~~iw~l~ 83 (124)
-....|+|++-+..+++.--.....+..... ...|....+.|+..+|...|+-...|.-+ .... ..+-.-+-.++
T Consensus 167 ~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~-sre~~~l~~l~ 245 (290)
T d1qqea_ 167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD-SRESNFLKSLI 245 (290)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc-hHHHHHHHHHH
Confidence 4577889999888887753221112221111 14566777889999999999888777522 2221 12344455666
Q ss_pred HHHHccChHHHHHHhhCCCC
Q 033242 84 QHLWTRDYAGVYDAIRGFDW 103 (124)
Q Consensus 84 ~~lw~rdy~~vy~al~~~~W 103 (124)
.++=.+|-..+-++++.++.
T Consensus 246 ~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 246 DAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 67777776666666665443
No 2
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.68 E-value=7.1 Score=26.80 Aligned_cols=62 Identities=11% Similarity=0.258 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCChhhhh---ccHHHHHHHHHH
Q 033242 15 YEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKD---SRAEVVAAWKIG 83 (124)
Q Consensus 15 ~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~---~~~el~~iw~l~ 83 (124)
|+.++..++++++.. |..|-|.--+++-++.+++.+..++|+-+-..+.. +-+-+..+-...
T Consensus 86 f~~~l~~l~Dl~iDi-------P~a~~~la~~~a~~i~~~~l~l~~l~~~~~~~l~~~g~~~~l~~~~L~~l 150 (193)
T d1ug3a1 86 LYEILELAEDMEIDI-------PHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLL 150 (193)
T ss_dssp HHHHHHHHHHHTTTC-------TTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhcc-------hHHHHHHHHHHHHHHHcCCCCHHHHHHHhcccccccchHHHHHHHHHHHH
Confidence 677889999888885 55667888999999999999999999866543332 235555554443
No 3
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.37 E-value=3.9 Score=25.40 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=27.2
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|++-+..|.|..+.++.++..|-.
T Consensus 43 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 71 (102)
T d3d7ca1 43 IDLKTMTERLRSRYYVTRKLFVADLQRVI 71 (102)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred cCHHHHHHHhccCccCCHHHHHHHHHHHH
Confidence 89999999999999999999999999875
No 4
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.39 E-value=6.2 Score=28.19 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=21.3
Q ss_pred CchhHHHHHhccCHHHHHHHHHHHhh
Q 033242 2 DFSPLTDALASKSYEKIADICDDLML 27 (124)
Q Consensus 2 ~~~~i~~~~~~~~~~~l~~~cE~~EL 27 (124)
++.++.+||..+||.+++.++|.-=+
T Consensus 43 r~~~m~~AI~~rDF~~f~eite~ds~ 68 (203)
T d1fi4a2 43 RFEVMRKAIVEKDFATFAKETMMDSN 68 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHH
Confidence 36788999999999999998875433
No 5
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.11 E-value=5.7 Score=24.94 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=27.2
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|..-+..|.|..+-++..+..|-.
T Consensus 44 mdL~tI~~kl~~~~Y~s~~~f~~Dv~li~ 72 (111)
T d1e6ia_ 44 MDLSTMEIKLESNKYQKMEDFIYDARLVF 72 (111)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 89999999999999999999999998875
No 6
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.46 E-value=6.2 Score=24.85 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=27.2
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|++-+..|.|..+.++.++.+|-.
T Consensus 50 mdL~tI~~kl~~~~Y~s~~ef~~Dv~li~ 78 (114)
T d3dwya1 50 MDLSTIKRKLDTGQYQEPWQYVDDVWLMF 78 (114)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCccccHHHHHHHHHHHH
Confidence 89999999999999999999999999885
No 7
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.46 E-value=6.5 Score=25.39 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=27.3
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|+.-+..|.|..+-++.++..|-.
T Consensus 51 mDL~tI~~kl~~~~Y~s~~ef~~Dv~li~ 79 (128)
T d1eqfa2 51 MDLETIRKNISKHKYQSRESFLDDVNLIL 79 (128)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 89999999999999999999999999875
No 8
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
Probab=32.78 E-value=57 Score=20.91 Aligned_cols=59 Identities=7% Similarity=-0.012 Sum_probs=36.3
Q ss_pred HHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCCh
Q 033242 8 DALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPS 67 (124)
Q Consensus 8 ~~~~~~~~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~ 67 (124)
.++..|+|++-...+++. |+..+++........+..+=.+|...+|..+|.-..++.-.
T Consensus 21 ~~~~~g~~~~A~~~~~~a-L~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 79 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLA-LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 79 (366)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH-HhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 367899999988888875 22222211100111233344577788999999988876543
No 9
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.31 E-value=7.9 Score=25.29 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=27.4
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
|||+.|..=+..|.|..+-++.++..|-.
T Consensus 67 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 95 (139)
T d1eqfa1 67 MDLQTLRENVRKRLYPSREEFREHLELIV 95 (139)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCcCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 10
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.09 E-value=5.7 Score=25.27 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=27.1
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.|..-|.+|.|..+.++..+..|-.
T Consensus 54 mdL~~I~~kl~~~~Y~s~~ef~~Dv~li~ 82 (118)
T d1wuma1 54 MDLKTMSERLKNRYYVSKKLFMADLQRVF 82 (118)
T ss_dssp CCHHHHHHHHTTTCCCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHhcccccCchHHHHHHHHHHH
Confidence 89999999999999999999999988875
No 11
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=30.75 E-value=58 Score=22.61 Aligned_cols=55 Identities=9% Similarity=0.025 Sum_probs=42.6
Q ss_pred hhHHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCc-hhHHHHHHHHHHhhchhhHHHHHhhC
Q 033242 4 SPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDE-WPYVIHLLGYYYVNDINSARFLWKSI 65 (124)
Q Consensus 4 ~~i~~~~~~~~~~~l~~~cE~~EL~~~~~g~~~~~~-~~Y~~~L~~yLl~~Dl~~AR~LwkRi 65 (124)
|.-+++++.|++++-+..+++. |+.. |++ ..+..+.-+|+..+|..+|.-..++.
T Consensus 1 tq~~~aL~~G~l~eAl~~l~~a-l~~~------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a 56 (264)
T d1zbpa1 1 TQWKNALSEGQLQQALELLIEA-IKAS------PKDASLRSSFIELLCIDGDFERADEQLMQS 56 (264)
T ss_dssp CCHHHHTTTTCHHHHHHHHHHH-HHTC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ChHHHHHHCCCHHHHHHHHHHH-HHHC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3467899999999988888765 3321 222 46888888999999999999888875
No 12
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=26.85 E-value=45 Score=23.08 Aligned_cols=50 Identities=10% Similarity=0.317 Sum_probs=31.6
Q ss_pred hhhhccHHHHHHHHHHHHHHccCh--------HHHHHHhhCCCCCHHHHHHHHHHHHH
Q 033242 68 TIKDSRAEVVAAWKIGQHLWTRDY--------AGVYDAIRGFDWSQEAQALVAAFSGA 117 (124)
Q Consensus 68 ~lk~~~~el~~iw~l~~~lw~rdy--------~~vy~al~~~~Ws~~~~~lv~~l~~~ 117 (124)
++.+....+..+..-.-.-..+.+ +.+...|..++|+..+.+|...+...
T Consensus 172 pLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~WPGNl~EL~~~l~~a 229 (247)
T d1ny5a2 172 PLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERA 229 (247)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred ChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 455554556655554333222221 57899999999999988877666544
No 13
>d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]}
Probab=26.57 E-value=26 Score=21.42 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=27.9
Q ss_pred HHHHHHHHHHccChHHHHHHhhCC-CCCHHHHHHHHHHHHHHhh
Q 033242 78 AAWKIGQHLWTRDYAGVYDAIRGF-DWSQEAQALVAAFSGACTK 120 (124)
Q Consensus 78 ~iw~l~~~lw~rdy~~vy~al~~~-~Ws~~~~~lv~~l~~~~r~ 120 (124)
.++.+..++-++|.+++.+.++.. +=+...+.++..+.+.+|+
T Consensus 6 ~~~~L~~~I~~~d~~~~L~~l~~i~~~G~d~~~~l~~L~~~~r~ 49 (126)
T d1jr3a1 6 QALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHR 49 (126)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 567888888999999888887651 2334444555555555543
No 14
>d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic domain {Bacteriophage T4 [TaxId: 10665]}
Probab=25.94 E-value=80 Score=21.65 Aligned_cols=67 Identities=13% Similarity=0.236 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhchhhHHH----------HHhhCChhhhhccHHHHHHHHHHHHHHccChHHHHHHhhCCCCCHHHHHHH
Q 033242 42 YVIHLLGYYYVNDINSARF----------LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALV 111 (124)
Q Consensus 42 Y~~~L~~yLl~~Dl~~AR~----------LwkRiP~~lk~~~~el~~iw~l~~~lw~rdy~~vy~al~~~~Ws~~~~~lv 111 (124)
++.=-+-.|+.+||..|.- .|..+|+..+ +.-+-=++.+|.. .-+.|+.+.++|+..+|..-...++
T Consensus 107 it~~ea~~Ll~~Dl~~a~~~~~~~~~~~~~~~~L~~~~q--~ALvsm~FNlG~~-~l~kF~~~~~al~~gd~~~Aa~Eml 183 (216)
T d1k28a3 107 ITMEEATTLFERDLADMQRDIKSHSKVGPVWQAVNRSRQ--MALENMAFQMGVG-GVAKFNTMLTAMLAGDWEKAYKAGR 183 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHSCHHHH--HHHHHHHHHHHHH-HHTTCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCHHHH--HHHhcceeccCCc-hhcccHHHHHHHHcCCHHHHHHHHH
Confidence 4444566677777776653 3566888887 3566667787764 2246777888887777777776654
No 15
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.19 E-value=82 Score=20.26 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=49.3
Q ss_pred HHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCChhhhhc-----cHHHHHHH
Q 033242 6 LTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDS-----RAEVVAAW 80 (124)
Q Consensus 6 i~~~~~~~~~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~~-----~~el~~iw 80 (124)
...++..|++++.+..|+..--. .| -+...|..++-+|.-.++..+|.-.++|.=..+++. .|+++.+.
T Consensus 74 a~~~~~~g~~~~Al~~~~~al~~-~P-----~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~ 147 (179)
T d2ff4a2 74 AEAEIACGRASAVIAELEALTFE-HP-----YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 147 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-ST-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHh-CC-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 45678899999999999876322 11 123569999999999999999988888764444332 46665553
No 16
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=23.88 E-value=46 Score=22.26 Aligned_cols=30 Identities=33% Similarity=0.650 Sum_probs=24.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKVA 30 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~~ 30 (124)
||++.++++++++++++-=..=-+++|+.+
T Consensus 9 idY~~L~~lL~~~~W~eAD~eT~~lml~~a 38 (151)
T d1y6ia2 9 IDYLPLQEALGSQDFETADEITRDKLCELA 38 (151)
T ss_dssp CCCHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHh
Confidence 799999999999999986666666777753
No 17
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.73 E-value=44 Score=22.26 Aligned_cols=29 Identities=14% Similarity=0.390 Sum_probs=22.9
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~EL~~ 29 (124)
||++.+++++++|++++-=..=-+++|+.
T Consensus 9 idY~~L~~lL~~~~W~eAD~eT~~lml~~ 37 (148)
T d1z3xa2 9 VDYQELAKLLVAEKFEAADRLTTQKLCEL 37 (148)
T ss_dssp CCCHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 79999999999999998544445566664
No 18
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.29 E-value=62 Score=20.32 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCCh
Q 033242 15 YEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPS 67 (124)
Q Consensus 15 ~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~ 67 (124)
|+.+++.++++++.. |+-+-|---+++-...+++-+.. +-.++|.
T Consensus 84 f~~~l~~l~Dl~lDv-------P~a~~~l~~fi~rav~d~~l~~~-~~~~~p~ 128 (129)
T d2nsza1 84 YERIYNEIPDINLDV-------PHSYSVLERFVEECFQAGIISKQ-LRDLCPS 128 (129)
T ss_dssp HHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTCSCHH-HHHTCTT
T ss_pred HHHHHhhCcHHhhcc-------ccHHHHHHHHHHHHHHcCCCCHH-HHhhCCC
Confidence 677888899988885 44445777788888899888766 4455553
No 19
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.70 E-value=48 Score=16.34 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=19.3
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHh
Q 033242 1 MDFSPLTDALASKSYEKIADICDDLM 26 (124)
Q Consensus 1 m~~~~i~~~~~~~~~~~l~~~cE~~E 26 (124)
|...+|.++|..-.-.+++.....+|
T Consensus 1 m~~eeiv~aiekltvaelaelvk~le 26 (30)
T d1zavu1 1 MTIDEIIEAIEKLTVSELAELVKKLE 26 (30)
T ss_dssp CCHHHHHHHHHHSBHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77788888888877777776655554
No 20
>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=21.34 E-value=92 Score=19.47 Aligned_cols=80 Identities=10% Similarity=0.106 Sum_probs=46.1
Q ss_pred hhHHHHHhc--cCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCChhhhhccHHHHHHHH
Q 033242 4 SPLTDALAS--KSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWK 81 (124)
Q Consensus 4 ~~i~~~~~~--~~~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~lk~~~~el~~iw~ 81 (124)
..|+.++++ +||+++...|-.+-=.++.=|... .---+.-+=-+.-.+|+..++-+..+|...+.....+|....+
T Consensus 58 ~~l~~al~~~~~D~~~~~~~aH~LKGss~~lGa~~--l~~~~~~lE~~~~~~~~~~~~~~~~~L~~e~~~l~~~L~~~l~ 135 (142)
T d1yvia1 58 NEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQK--VKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQ 135 (142)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhHHhhccHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777764 577777666655431111102211 1123444444555677778888888888777777777776666
Q ss_pred HHHH
Q 033242 82 IGQH 85 (124)
Q Consensus 82 l~~~ 85 (124)
+-+.
T Consensus 136 ~~~q 139 (142)
T d1yvia1 136 LEQQ 139 (142)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 21
>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.21 E-value=47 Score=20.20 Aligned_cols=65 Identities=12% Similarity=0.040 Sum_probs=33.2
Q ss_pred chhHHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhchhhHHHHHhhCChhh
Q 033242 3 FSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTI 69 (124)
Q Consensus 3 ~~~i~~~~~~~~~~~l~~~cE~~EL~~~~~g~~~~~~~~Y~~~L~~yLl~~Dl~~AR~LwkRiP~~l 69 (124)
...++.+++++||+++...+-.+= ++++....+...-.+.-|=...-.+|...++-+.+.|-..+
T Consensus 48 l~~L~~a~~~~D~~~l~~~aH~LK--Gs~~~~Ga~~l~~~~~~lE~~~~~~~~~~~~~ll~~le~~~ 112 (116)
T d1sr2a_ 48 VKRLYTEAATSDFAALAQTAHRLK--GVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSYV 112 (116)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH--HHHHHcCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 457888999999999877765443 32111111111123333333444555555555555443333
Done!