BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033244
         (124 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2A3Q|A Chain A, X-Ray Structure Of Protein From Mus Musculus Mm.29898
 pdb|2A3Q|B Chain B, X-Ray Structure Of Protein From Mus Musculus Mm.29898
 pdb|2Q4P|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
           From Mus Musculus Mm.29898
 pdb|2Q4P|B Chain B, Ensemble Refinement Of The Crystal Structure Of Protein
           From Mus Musculus Mm.29898
          Length = 170

 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 61/102 (59%)

Query: 17  SLQELRDRLAEFAEVRGWKQYHSPRNXXXXXXXXXXXXSEIFQWRGEVARGLPNWSSDDK 76
           +L+++R   AEFA  R W+Q+H PRN            +E+FQW+ +   G   W   ++
Sbjct: 30  TLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKER 89

Query: 77  EHLEEELSDVLLYLIQLADVCGLDLGQAALAKIVKNARKYPV 118
             L+EELSDVL+YL+ LA  C +DL QA ++K   N ++YPV
Sbjct: 90  AALQEELSDVLIYLVALAARCHVDLPQAVISKXDTNRQRYPV 131


>pdb|2OIE|A Chain A, Crystal Structure Of Rs21-C6 Core Segment Rscut
 pdb|2OIE|B Chain B, Crystal Structure Of Rs21-C6 Core Segment Rscut
 pdb|2OIE|C Chain C, Crystal Structure Of Rs21-C6 Core Segment Rscut
 pdb|2OIE|D Chain D, Crystal Structure Of Rs21-C6 Core Segment Rscut
 pdb|2OIG|A Chain A, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
           Complex
 pdb|2OIG|B Chain B, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
           Complex
 pdb|2OIG|C Chain C, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
           Complex
 pdb|2OIG|D Chain D, Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp
           Complex
          Length = 111

 Score = 79.3 bits (194), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 58/99 (58%)

Query: 14  KDVSLQELRDRLAEFAEVRGWKQYHSPRNXXXXXXXXXXXXSEIFQWRGEVARGLPNWSS 73
            + +L+++R   AEFA  R W+Q+H PRN            +E+FQW+ +   G   W  
Sbjct: 12  PEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPP 71

Query: 74  DDKEHLEEELSDVLLYLIQLADVCGLDLGQAALAKIVKN 112
            ++  L+EELSDVL+YL+ LA  C +DL QA ++K+  N
Sbjct: 72  KERAALQEELSDVLIYLVALAARCHVDLPQAVISKMDTN 110


>pdb|3OBC|A Chain A, Crystal Structure Of A Pyrophosphatase (Af1178) From
           Archaeoglobus Fulgidus At 1.80 A Resolution
 pdb|3OBC|B Chain B, Crystal Structure Of A Pyrophosphatase (Af1178) From
           Archaeoglobus Fulgidus At 1.80 A Resolution
          Length = 118

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 17/107 (15%)

Query: 19  QELRDRLAEFAEVRGWKQYHSPRNXXXXXXXXXXXXSEIFQWRGEVARGLPNWSSDD--- 75
           +EL D L EF + RGW +YH+P+N             EIFQW           SSD+   
Sbjct: 14  EELLDILREFRDSRGWLKYHTPKNLAVSISIEVAELLEIFQW---------TRSSDEEFE 64

Query: 76  -----KEHLEEELSDVLLYLIQLADVCGLDLGQAALAKIVKNARKYP 117
                K  +EEE++DVL+YL+ L DV  ++  +A   K  KN RKYP
Sbjct: 65  VLERRKGEVEEEIADVLIYLLFLCDVAEINPIEAVKRKXEKNERKYP 111


>pdb|1VMG|A Chain A, Crystal Structure Of Mazg Nucleotide Pyrophosphohydrolase
           (13816655) From Sulfolobus Solfataricus At 1.46 A
           Resolution
          Length = 95

 Score = 29.3 bits (64), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 7/51 (13%)

Query: 58  FQWR----GEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADVCGLDLGQA 104
           F W     GE+A  L    S++ + ++EEL+DV+ + + +A++ G+D+ +A
Sbjct: 41  FTWLVEEVGELAEALL---SNNLDSIQEELADVIAWTVSIANLEGIDIEEA 88


>pdb|2Q73|A Chain A, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
           (P41212)
 pdb|2Q73|B Chain B, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
           (P41212)
 pdb|2Q73|C Chain C, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
           (P41212)
 pdb|2Q73|D Chain D, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
           (P41212)
 pdb|2Q9L|A Chain A, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
           (P43212)
 pdb|2Q9L|B Chain B, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
           (P43212)
 pdb|2Q9L|C Chain C, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
           (P43212)
 pdb|2Q9L|D Chain D, Crystal Structure Of Imazg From Vibrio Dat 722: Ctag-Imazg
           (P43212)
          Length = 100

 Score = 28.9 bits (63), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 81  EELSDVLLYLIQLADVCGLDLGQAALAKIVKNARKY 116
           EEL DVL Y+  LA++ G++L +    K V N  KY
Sbjct: 57  EELYDVLYYVCALANIHGVNLEKTHELKEVLNKVKY 92


>pdb|2Q5Z|A Chain A, Crystal Structure Of Imazg From Vibrio Dat 722: Ntag-Imazg
           (P43212)
 pdb|2Q5Z|B Chain B, Crystal Structure Of Imazg From Vibrio Dat 722: Ntag-Imazg
           (P43212)
          Length = 114

 Score = 28.5 bits (62), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 81  EELSDVLLYLIQLADVCGLDLGQAALAKIVKNARKY 116
           EEL DVL Y+  LA++ G++L +    K V N  KY
Sbjct: 77  EELYDVLYYVCALANIHGVNLEKTRELKEVLNKVKY 112


>pdb|2GTA|A Chain A, Crystal Structure Of The Putative Pyrophosphatase Ypjd
           From Bacillus Subtilis. Northeast Structural Genomics
           Consortium Target Sr428.
 pdb|2GTA|B Chain B, Crystal Structure Of The Putative Pyrophosphatase Ypjd
           From Bacillus Subtilis. Northeast Structural Genomics
           Consortium Target Sr428.
 pdb|2GTA|C Chain C, Crystal Structure Of The Putative Pyrophosphatase Ypjd
           From Bacillus Subtilis. Northeast Structural Genomics
           Consortium Target Sr428.
 pdb|2GTA|D Chain D, Crystal Structure Of The Putative Pyrophosphatase Ypjd
           From Bacillus Subtilis. Northeast Structural Genomics
           Consortium Target Sr428
          Length = 119

 Score = 28.5 bits (62), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 7/50 (14%)

Query: 62  GEVARGL-------PNWSSDDKEHLEEELSDVLLYLIQLADVCGLDLGQA 104
           GE+AR +       P  +++D +  EEE+ DVL  L+ LA+   + L +A
Sbjct: 39  GELAREVNHRYGEKPKKATEDDKSXEEEIGDVLFVLVCLANSLDISLEEA 88


>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
           Oxidase From Hansenula Polymorpha Expressed In Yeast
 pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
           Oxidase From Hansenula Polymorpha Expressed In Yeast
 pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
           Oxidase From Hansenula Polymorpha Expressed In Yeast
 pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
           Oxidase From Hansenula Polymorpha Expressed In Yeast
 pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
           Oxidase From Hansenula Polymorpha Expressed In Yeast
 pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
           Oxidase From Hansenula Polymorpha Expressed In Yeast
          Length = 657

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 59  QWRGEVARGLPNWSSDDKEHLEEELSDVLLY 89
           QW G+  RG+  W  D  E+++   +D+L +
Sbjct: 573 QWSGDGVRGMREWIGDGSENIDN--TDILFF 601


>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
           Copper Amine Oxidase Of Hansenula Polymorpha Expressed
           In Escherichia Coli
 pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
           Copper Amine Oxidase Of Hansenula Polymorpha Expressed
           In Escherichia Coli
 pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
           Copper Amine Oxidase Of Hansenula Polymorpha Expressed
           In Escherichia Coli
          Length = 656

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 59  QWRGEVARGLPNWSSDDKEHLEEELSDVLLY 89
           QW G+  RG+  W  D  E+++   +D+L +
Sbjct: 573 QWSGDGVRGMREWIGDGSENIDN--TDILFF 601


>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
 pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
 pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
 pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
 pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
 pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
          Length = 655

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 59  QWRGEVARGLPNWSSDDKEHLEEELSDVLLY 89
           QW G+  RG+  W  D  E+++   +D+L +
Sbjct: 572 QWSGDGVRGMREWIGDGSENIDN--TDILFF 600


>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
           The Copper Amine Oxidase From Hansenula Polymorpha
 pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
           The Copper Amine Oxidase From Hansenula Polymorpha
 pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
           The Copper Amine Oxidase From Hansenula Polymorpha
 pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
           The Copper Amine Oxidase From Hansenula Polymorpha
 pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
           The Copper Amine Oxidase From Hansenula Polymorpha
 pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
           The Copper Amine Oxidase From Hansenula Polymorpha
          Length = 663

 Score = 27.3 bits (59), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 59  QWRGEVARGLPNWSSDDKEHLEEELSDVLLY 89
           QW G+  RG+  W  D  E+++   +D+L +
Sbjct: 576 QWSGDGVRGMREWIGDGSENIDN--TDILFF 604


>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
           Oxidase From Hansenula Polymorpha
 pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
           Oxidase From Hansenula Polymorpha
 pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
           Oxidase From Hansenula Polymorpha
 pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
           Oxidase From Hansenula Polymorpha
 pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
           Oxidase From Hansenula Polymorpha
 pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
           Oxidase From Hansenula Polymorpha
          Length = 692

 Score = 27.3 bits (59), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 59  QWRGEVARGLPNWSSDDKEHLEEELSDVLLY 89
           QW G+  RG+  W  D  E+++   +D+L +
Sbjct: 589 QWSGDGVRGMREWIGDGSENIDN--TDILFF 617


>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
           1.7 Angstroms
 pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
           1.7 Angstroms
 pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
           1.7 Angstroms
 pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
           1.7 Angstroms
 pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
           Complex With Xe To 1.6 Angstroms
 pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
           Complex With Xe To 1.6 Angstroms
 pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
           Complex With Xe To 1.6 Angstroms
 pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
           Complex With Xe To 1.6 Angstroms
          Length = 660

 Score = 27.3 bits (59), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 59  QWRGEVARGLPNWSSDDKEHLEEELSDVLLY 89
           QW G+  RG+  W  D  E+++   +D+L +
Sbjct: 577 QWSGDGVRGMREWIGDGSENIDN--TDILFF 605


>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
           1.7 Angstroms
 pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
           1.7 Angstroms
 pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
           Complex With Xe To 1.6 Angstroms
 pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
           Complex With Xe To 1.6 Angstroms
          Length = 660

 Score = 27.3 bits (59), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 59  QWRGEVARGLPNWSSDDKEHLEEELSDVLLY 89
           QW G+  RG+  W  D  E+++   +D+L +
Sbjct: 577 QWSGDGVRGMREWIGDGSENIDN--TDILFF 605


>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
           Form
 pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
           Form
 pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
           Form
 pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Co(ii)
 pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Co(ii)
 pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Co(ii)
 pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Co(ii)
 pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Co(ii)
 pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Co(ii)
 pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Cu(i)
 pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Cu(i)
 pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
           With Cu(i)
          Length = 692

 Score = 27.3 bits (59), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 59  QWRGEVARGLPNWSSDDKEHLEEELSDVLLY 89
           QW G+  RG+  W  D  E+++   +D+L +
Sbjct: 589 QWSGDGVRGMREWIGDGSENIDN--TDILFF 617


>pdb|1REQ|B Chain B, Methylmalonyl-Coa Mutase
 pdb|1REQ|D Chain D, Methylmalonyl-Coa Mutase
 pdb|2REQ|B Chain B, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
           Open Conformation Representing Substrate-Free State
 pdb|2REQ|D Chain D, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
           Open Conformation Representing Substrate-Free State
 pdb|3REQ|B Chain B, Methylmalonyl-Coa Mutase, Substrate-Free State (Poor
           Quality Structure)
 pdb|6REQ|B Chain B, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
           Complex
 pdb|6REQ|D Chain D, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
           Complex
 pdb|7REQ|B Chain B, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
           Complex
 pdb|7REQ|D Chain D, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
           Complex
 pdb|4REQ|B Chain B, Methylmalonyl-Coa Mutase Substrate Complex
 pdb|4REQ|D Chain D, Methylmalonyl-Coa Mutase Substrate Complex
 pdb|5REQ|B Chain B, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
 pdb|5REQ|D Chain D, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
 pdb|1E1C|B Chain B, Methylmalonyl-Coa Mutase H244a Mutant
 pdb|1E1C|D Chain D, Methylmalonyl-Coa Mutase H244a Mutant
          Length = 637

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 77  EHLEEELSDVLLYLIQLADVCGLDLGQAALAKI 109
           EHL+E LSDVLL + ++      D G AA A +
Sbjct: 147 EHLDEVLSDVLLEMTKVEVFSRYDQGAAAEALV 179


>pdb|2JNA|A Chain A, Solution Nmr Structure Of Salmonella Typhimurium Lt2
          Secreted Protein Stm0082: Northeast Structural Genomics
          Consortium Target Str109
 pdb|2JNA|B Chain B, Solution Nmr Structure Of Salmonella Typhimurium Lt2
          Secreted Protein Stm0082: Northeast Structural Genomics
          Consortium Target Str109
          Length = 104

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 17 SLQELRDRLAEFAEVRGWKQYH 38
          S  +LR++L+E A+ +G K YH
Sbjct: 52 SPSDLREKLSELADAKGGKYYH 73


>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
           Recognition Sequence Site B
 pdb|3K49|C Chain C, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
           Recognition Sequence Site B
 pdb|3K49|E Chain E, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
           Recognition Sequence Site B
 pdb|3K4E|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
           Recognition Sequence Site A
 pdb|3K4E|C Chain C, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
           Recognition Sequence Site A
 pdb|3K4E|E Chain E, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
           Recognition Sequence Site A
          Length = 369

 Score = 25.4 bits (54), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 64  VARGLPNWSSDDKEHLEEELSDVLLYLIQ 92
           + R L   SS+D+E +  EL D + YLIQ
Sbjct: 190 IQRLLEFGSSEDQESILNELKDFIPYLIQ 218


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,183,754
Number of Sequences: 62578
Number of extensions: 99066
Number of successful extensions: 224
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 20
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)