Query 033244
Match_columns 124
No_of_seqs 109 out of 1077
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03819 MazG: MazG nucleotide 99.8 1.1E-19 2.5E-24 114.1 9.3 70 38-120 1-74 (74)
2 PRK09562 mazG nucleoside triph 99.7 1.1E-16 2.5E-21 121.9 11.3 92 17-121 8-106 (262)
3 PRK09562 mazG nucleoside triph 99.7 3.7E-16 8.1E-21 119.1 8.8 95 8-120 137-231 (262)
4 COG1694 MazG Predicted pyropho 99.6 1E-14 2.2E-19 96.6 11.2 90 19-120 4-100 (102)
5 TIGR00444 mazG MazG family pro 99.6 3.3E-15 7.2E-20 113.0 8.6 96 8-119 126-221 (248)
6 TIGR00444 mazG MazG family pro 99.5 6.4E-14 1.4E-18 106.0 9.9 78 31-121 11-92 (248)
7 PRK12334 nucleoside triphospha 99.5 1.6E-13 3.5E-18 105.0 9.6 92 17-121 63-160 (277)
8 PRK12333 nucleoside triphospha 99.5 3.1E-13 6.8E-18 99.2 10.5 90 19-121 2-97 (204)
9 PF12643 MazG-like: MazG-like 99.1 8.1E-11 1.8E-15 77.6 5.3 79 32-123 3-85 (98)
10 COG3956 Protein containing tet 99.1 9.2E-11 2E-15 92.1 6.3 93 7-117 363-455 (488)
11 PF01503 PRA-PH: Phosphoribosy 98.8 5.6E-08 1.2E-12 62.1 8.6 57 43-112 27-83 (83)
12 PLN02346 histidine biosynthesi 98.8 6E-08 1.3E-12 74.0 9.4 85 17-117 163-256 (271)
13 COG3956 Protein containing tet 98.8 7.8E-08 1.7E-12 75.8 9.9 92 17-121 233-330 (488)
14 PRK12334 nucleoside triphospha 98.6 6.4E-08 1.4E-12 74.4 6.0 43 77-119 221-263 (277)
15 PRK12333 nucleoside triphospha 98.6 2.4E-07 5.3E-12 68.3 6.7 38 82-119 165-202 (204)
16 TIGR03188 histidine_hisI phosp 98.3 1.1E-05 2.4E-10 51.8 8.4 55 40-107 29-83 (84)
17 PRK00400 hisE phosphoribosyl-A 98.2 2.5E-05 5.4E-10 52.2 9.1 57 41-110 34-90 (105)
18 PF04447 DUF550: Protein of un 98.2 2.2E-05 4.8E-10 51.5 8.3 76 23-118 4-83 (100)
19 COG0140 HisI Phosphoribosyl-AT 98.0 0.00012 2.6E-09 47.6 9.1 56 40-108 29-84 (92)
20 PRK02759 bifunctional phosphor 97.9 9E-05 1.9E-09 54.7 8.5 78 17-107 115-198 (203)
21 PHA02602 56 dCTP pyrophosphata 97.3 0.0054 1.2E-07 43.7 9.6 109 7-115 23-164 (172)
22 PF08761 dUTPase_2: dUTPase; 96.4 0.007 1.5E-07 43.2 4.6 84 17-104 4-95 (167)
23 KOG4311 Histidinol dehydrogena 95.6 0.069 1.5E-06 41.4 7.1 61 39-115 271-334 (359)
24 COG4508 Dimeric dUTPase [Carbo 94.3 0.33 7.1E-06 34.0 7.0 74 21-98 9-83 (161)
25 COG4696 Uncharacterized protei 93.6 0.3 6.6E-06 34.6 5.9 50 73-122 89-139 (180)
26 COG4997 Uncharacterized conser 92.7 1.5 3.3E-05 28.2 7.6 37 79-115 53-89 (95)
27 COG1694 MazG Predicted pyropho 87.1 3.1 6.8E-05 26.9 5.9 53 39-103 30-83 (102)
28 COG3079 Uncharacterized protei 72.4 34 0.00075 24.8 7.5 67 19-94 100-166 (186)
29 PF02520 DUF148: Domain of unk 66.3 34 0.00074 22.4 10.6 90 7-119 9-98 (113)
30 PF10543 ORF6N: ORF6N domain; 62.1 15 0.00033 23.2 3.6 30 89-119 14-43 (88)
31 PHA02591 hypothetical protein; 56.2 13 0.00027 23.6 2.4 32 73-104 45-76 (83)
32 PF12651 RHH_3: Ribbon-helix-h 56.2 33 0.00071 18.9 4.8 30 88-117 15-44 (44)
33 PF02042 RWP-RK: RWP-RK domain 56.1 11 0.00024 21.8 2.0 34 76-123 18-51 (52)
34 COG3286 Uncharacterized protei 53.6 64 0.0014 23.9 6.0 90 8-116 81-174 (204)
35 PF06892 Phage_CP76: Phage reg 52.1 74 0.0016 22.6 6.1 84 8-95 41-141 (162)
36 PRK13710 plasmid maintenance p 49.9 33 0.00071 21.2 3.5 27 90-116 13-39 (72)
37 cd03195 GST_C_4 GST_C family, 49.8 30 0.00065 22.4 3.6 33 83-115 71-104 (114)
38 PF08761 dUTPase_2: dUTPase; 49.7 45 0.00097 23.5 4.7 32 83-114 127-158 (167)
39 cd07644 I-BAR_IMD_BAIAP2L2 Inv 48.1 28 0.0006 26.1 3.5 34 78-111 61-94 (215)
40 PF06940 DUF1287: Domain of un 46.2 37 0.0008 24.4 3.7 33 83-118 36-68 (164)
41 PF00816 Histone_HNS: H-NS his 44.2 43 0.00092 21.2 3.6 27 78-104 17-43 (93)
42 PF07362 CcdA: Post-segregatio 43.9 27 0.00059 21.4 2.5 26 90-115 13-38 (72)
43 cd07645 I-BAR_IMD_BAIAP2L1 Inv 41.4 38 0.00083 25.6 3.4 34 79-112 62-95 (226)
44 PF06262 DUF1025: Possibl zinc 38.6 75 0.0016 20.7 4.1 28 75-104 65-92 (97)
45 TIGR02899 spore_safA spore coa 38.6 26 0.00056 18.0 1.6 15 92-106 9-23 (44)
46 PF08913 VBS: Vinculin Binding 37.8 1.3E+02 0.0028 20.5 6.0 85 17-106 1-98 (125)
47 TIGR02384 RelB_DinJ addiction 36.8 1.1E+02 0.0023 19.2 4.6 28 91-118 18-47 (83)
48 PF12844 HTH_19: Helix-turn-he 36.4 31 0.00068 19.7 1.9 19 88-106 42-60 (64)
49 PF01402 RHH_1: Ribbon-helix-h 35.8 67 0.0014 16.5 4.6 27 89-115 13-39 (39)
50 PF11479 Suppressor_P21: RNA s 35.4 23 0.00049 24.6 1.3 30 85-114 104-134 (177)
51 PF13817 DDE_Tnp_IS66_C: IS66 35.3 65 0.0014 17.4 2.9 28 90-118 2-29 (39)
52 PF13443 HTH_26: Cro/C1-type H 33.8 27 0.00058 19.9 1.3 18 88-105 41-58 (63)
53 PRK11235 bifunctional antitoxi 33.6 91 0.002 19.6 3.7 28 92-119 18-47 (80)
54 COG3077 RelB DNA-damage-induci 33.5 1.3E+02 0.0029 19.3 4.7 32 76-114 12-43 (88)
55 PF13413 HTH_25: Helix-turn-he 32.5 61 0.0013 19.1 2.7 21 84-104 42-62 (62)
56 PF08418 Pol_alpha_B_N: DNA po 32.0 54 0.0012 24.5 3.0 32 84-115 9-40 (253)
57 cd01169 HMPP_kinase 4-amino-5- 30.3 1.3E+02 0.0029 21.7 4.8 31 83-113 206-236 (242)
58 PHA01623 hypothetical protein 30.0 1.2E+02 0.0026 17.6 4.9 27 89-115 27-53 (56)
59 PRK05270 galactose-1-phosphate 29.9 1.7E+02 0.0036 24.8 5.7 65 46-110 412-491 (493)
60 PF04221 RelB: RelB antitoxin; 29.6 1.4E+02 0.0031 18.4 4.5 24 91-114 17-40 (83)
61 PF12668 DUF3791: Protein of u 29.3 89 0.0019 18.2 3.1 23 87-109 5-27 (62)
62 PF08543 Phos_pyr_kin: Phospho 28.7 1.5E+02 0.0032 22.0 4.9 34 80-113 196-229 (246)
63 PF11020 DUF2610: Domain of un 28.3 1.6E+02 0.0035 18.7 4.8 33 78-110 45-77 (82)
64 PF09999 DUF2240: Uncharacteri 27.4 1.1E+02 0.0023 21.5 3.6 30 77-106 110-142 (144)
65 cd08779 Death_PIDD Death Domai 27.2 1.6E+02 0.0036 18.4 4.6 9 74-82 28-36 (86)
66 PHA01083 hypothetical protein 27.1 63 0.0014 22.9 2.4 19 90-108 49-67 (149)
67 PF12637 TSCPD: TSCPD domain; 27.1 1.4E+02 0.003 19.1 3.9 27 81-107 37-63 (95)
68 COG3612 Uncharacterized protei 26.9 1.3E+02 0.0027 21.4 3.8 33 77-109 116-150 (157)
69 KOG1655 Protein involved in va 26.5 2.6E+02 0.0055 20.9 5.5 44 36-86 127-170 (218)
70 PF12864 DUF3822: Protein of u 25.7 38 0.00082 25.4 1.2 21 83-103 206-226 (253)
71 PF12554 MOZART1: Mitotic-spin 25.4 1.4E+02 0.003 16.9 3.8 23 87-111 24-46 (48)
72 PF05066 HARE-HTH: HB1, ASXL, 24.9 33 0.00071 20.5 0.6 24 6-29 8-31 (72)
73 PF12221 HflK_N: Bacterial mem 24.7 1.1E+02 0.0023 16.9 2.6 20 99-118 21-40 (42)
74 PRK08176 pdxK pyridoxal-pyrido 24.7 1.8E+02 0.0038 22.1 4.7 31 83-113 231-261 (281)
75 PF09691 PulS_OutS: Bacterial 24.5 1.9E+02 0.0042 19.2 4.3 34 18-51 48-81 (109)
76 cd03194 GST_C_3 GST_C family, 24.2 1.4E+02 0.0031 19.2 3.6 33 83-115 72-105 (114)
77 PF00984 UDPG_MGDP_dh: UDP-glu 24.0 76 0.0016 20.4 2.2 21 91-111 26-46 (96)
78 PF13318 DUF4089: Protein of u 23.7 91 0.002 17.7 2.3 27 89-115 1-27 (50)
79 COG3784 Uncharacterized protei 23.6 1.8E+02 0.0039 19.3 3.9 31 90-120 67-97 (109)
80 PRK12413 phosphomethylpyrimidi 23.2 2.1E+02 0.0045 21.0 4.8 30 83-112 207-236 (253)
81 COG1476 Predicted transcriptio 23.2 1.3E+02 0.0028 18.4 3.0 22 86-107 42-63 (68)
82 COG0280 Pta Phosphotransacetyl 22.9 91 0.002 24.9 2.9 26 77-102 172-197 (327)
83 cd01947 Guanosine_kinase_like 22.5 1.7E+02 0.0037 21.4 4.2 27 84-110 227-253 (265)
84 cd07646 I-BAR_IMD_IRSp53 Inver 22.4 1.2E+02 0.0027 23.0 3.3 31 80-110 65-95 (232)
85 PHA01748 hypothetical protein 22.3 1.8E+02 0.0038 17.0 3.9 28 88-115 15-42 (60)
86 PF13174 TPR_6: Tetratricopept 22.3 1E+02 0.0023 14.4 4.1 31 86-118 2-32 (33)
87 PHA01976 helix-turn-helix prot 22.3 96 0.0021 17.7 2.3 17 89-105 46-62 (67)
88 cd01173 pyridoxal_pyridoxamine 21.7 2.3E+02 0.005 20.7 4.8 31 83-113 216-246 (254)
89 PRK07105 pyridoxamine kinase; 21.3 2.3E+02 0.0049 21.3 4.7 30 83-112 220-249 (284)
90 PRK05756 pyridoxamine kinase; 21.3 2.3E+02 0.005 21.3 4.8 31 83-113 220-250 (286)
91 PRK06427 bifunctional hydroxy- 21.2 2.4E+02 0.0052 20.8 4.8 30 83-112 213-242 (266)
92 COG1093 SUI2 Translation initi 21.1 1.7E+02 0.0038 22.7 4.0 29 90-118 107-135 (269)
93 cd07666 BAR_SNX7 The Bin/Amphi 21.0 3.8E+02 0.0083 20.4 6.8 18 14-31 52-69 (243)
94 PRK12616 pyridoxal kinase; Rev 20.9 2.4E+02 0.0052 21.2 4.8 32 82-113 213-244 (270)
95 PRK10328 DNA binding protein, 20.9 2.9E+02 0.0064 19.0 8.1 31 77-107 48-78 (134)
96 KOG4350 Uncharacterized conser 20.7 1.3E+02 0.0029 25.2 3.4 35 79-113 110-145 (620)
97 PRK12412 pyridoxal kinase; Rev 20.6 2.5E+02 0.0054 21.0 4.8 32 82-113 210-241 (268)
98 KOG1593 Asparaginase [Amino ac 20.4 2E+02 0.0043 22.7 4.1 36 83-118 262-302 (349)
99 TIGR00687 pyridox_kin pyridoxa 20.4 1.9E+02 0.0042 21.7 4.2 29 83-111 221-249 (286)
100 PF08671 SinI: Anti-repressor 20.3 1.4E+02 0.0031 15.2 2.4 16 89-104 7-22 (30)
101 PF09055 Sod_Ni: Nickel-contai 20.2 1.9E+02 0.0041 19.9 3.7 11 3-13 72-82 (128)
No 1
>PF03819 MazG: MazG nucleotide pyrophosphohydrolase domain; InterPro: IPR004518 This domain is found in a group of prokaryotic proteins which includes Escherichia coli MazG. The domain is about 100 amino acid residues in length and contains four conserved negatively charged residues that probably form an active site or metal binding site.; PDB: 1VMG_A 2YXH_B 2OIE_B 2OIG_C 2Q4P_A 2A3Q_B 2Q9L_C 2Q5Z_B 2Q73_A 3CRC_B ....
Probab=99.82 E-value=1.1e-19 Score=114.09 Aligned_cols=70 Identities=50% Similarity=0.802 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHH
Q 033244 38 HSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADV----CGLDLGQAALAKIVKNA 113 (124)
Q Consensus 38 ~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~----~giDle~al~~k~~k~~ 113 (124)
+||.+++.++.+|+|||+++|.+ .+.+++.+|||||||+++.+|+. +|+|+++++..+++|+.
T Consensus 1 qt~~~~~~~l~eE~~El~~ai~~-------------~~~~~l~eElgDvl~~l~~la~~~~~~~~idle~~~~~~~~K~~ 67 (74)
T PF03819_consen 1 QTPESLLLKLIEEVGELAEAIRK-------------EDRENLEEELGDVLFYLLQLARILEERLGIDLEEALERKMEKLE 67 (74)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHHHHHHHHHHHCHTTSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHhHcCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999973 46789999999999999999998 99999999999999999
Q ss_pred hhcCCcc
Q 033244 114 RKYPVIN 120 (124)
Q Consensus 114 ~R~~~~~ 120 (124)
+||||.+
T Consensus 68 ~R~p~~f 74 (74)
T PF03819_consen 68 RRYPHVF 74 (74)
T ss_dssp HHSGGGG
T ss_pred ccCCCCC
Confidence 9999863
No 2
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=99.71 E-value=1.1e-16 Score=121.92 Aligned_cols=92 Identities=22% Similarity=0.310 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHh---cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHH
Q 033244 17 SLQELRDRLAEFAEV---RGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQL 93 (124)
Q Consensus 17 ~i~elq~~i~~~~~~---~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~l 93 (124)
++..|...+...... +.|++.+|+.+++..+.||++||.++|. ..+.+++.+|||||||.++.+
T Consensus 8 ~~~~l~~~~~~lr~~~~GcpWd~~Qt~~sl~~~l~EE~~El~~ai~-------------~~d~~~l~eElGDvL~~vv~~ 74 (262)
T PRK09562 8 AIDRLLEIMARLRDPEGGCPWDKEQTFASLAPYTIEEAYEVVDAIE-------------RGDLDDLREELGDLLLQVVFH 74 (262)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHH
Confidence 588888999888854 8999999999999999999999999996 346889999999999999999
Q ss_pred HHHc----CCCHHHHHHHHHHHHHhhcCCccc
Q 033244 94 ADVC----GLDLGQAALAKIVKNARKYPVINQ 121 (124)
Q Consensus 94 A~~~----giDle~al~~k~~k~~~R~~~~~~ 121 (124)
|+.+ ++|+++++....+|+++||||.+.
T Consensus 75 a~~~~e~~~~d~e~vl~~~~~K~~~R~p~vf~ 106 (262)
T PRK09562 75 AQMAEEQGAFDFADVVEAISDKLIRRHPHVFG 106 (262)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhhhchhhcc
Confidence 9999 899999999999999999998764
No 3
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=99.66 E-value=3.7e-16 Score=119.11 Aligned_cols=95 Identities=23% Similarity=0.340 Sum_probs=84.5
Q ss_pred hccccCCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHH
Q 033244 8 CVKKAYKDVSLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVL 87 (124)
Q Consensus 8 ~~~~~~~~m~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL 87 (124)
|++..|+.|.-..+|+++...+ ++|+ ++...+..+.+|++||.+++. ..+.+++.+||||+|
T Consensus 137 ip~~lPaL~~a~KiqkrAa~~G--f~w~---~~~~~~~kl~EE~~El~~Ai~-------------~~~~~~l~eElGDlL 198 (262)
T PRK09562 137 IPRGLPALMRAYKIQKKAARVG--FDWE---SLEPVLDKVEEEIDELKEALA-------------QGDQAKIEEEFGDLL 198 (262)
T ss_pred CcccCCHHHHHHHHHHHHHhcC--CCCC---ChHHHHHHHHHHHHHHHHHHH-------------ccChhhHHHHHHHHH
Confidence 5677788899999999987764 7787 677799999999999999996 346789999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc
Q 033244 88 LYLIQLADVCGLDLGQAALAKIVKNARKYPVIN 120 (124)
Q Consensus 88 ~~l~~lA~~~giDle~al~~k~~k~~~R~~~~~ 120 (124)
+.|+.+|+.+|||+++|+...+.|+.+|||+.+
T Consensus 199 f~lv~lAr~~~id~E~aL~~a~~Kf~rR~~~vE 231 (262)
T PRK09562 199 FALVNLARHLGIDPEAALRKANAKFERRFRAVE 231 (262)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999999999754
No 4
>COG1694 MazG Predicted pyrophosphatase [General function prediction only]
Probab=99.62 E-value=1e-14 Score=96.62 Aligned_cols=90 Identities=34% Similarity=0.486 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHh---cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 033244 19 QELRDRLAEFAEV---RGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLAD 95 (124)
Q Consensus 19 ~elq~~i~~~~~~---~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~ 95 (124)
..+...+.+.... ..|+..+++...+..+++|+|||+++|++. .+.+++.+||||||++++.+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eE~gEv~eai~~~------------~~~~~l~eELgDvL~~v~~~a~ 71 (102)
T COG1694 4 EKLLDIMAQLRDPEGGCPWDEEQTPESLLLYLVEEAGEVAEAIRKE------------EDLEDLKEELGDVLADVLFLAN 71 (102)
T ss_pred HHHHHHHHHHHhHhccCcccCcCCHHHHHHHHHHHHHHHHHHHHhc------------CcHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433 557777789999999999999999999832 2788999999999999999999
Q ss_pred HcCCCHHHHHHH----HHHHHHhhcCCcc
Q 033244 96 VCGLDLGQAALA----KIVKNARKYPVIN 120 (124)
Q Consensus 96 ~~giDle~al~~----k~~k~~~R~~~~~ 120 (124)
.+++|++.++.. ...|+.+|+|+..
T Consensus 72 ~~~~~~~~~~~~v~~~~~~k~~rr~p~~~ 100 (102)
T COG1694 72 LLDIDLEFALEEVVRKIAEKLERRHPHVF 100 (102)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhccccc
Confidence 999887655555 5557778888865
No 5
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=99.60 E-value=3.3e-15 Score=113.03 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=82.3
Q ss_pred hccccCCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHH
Q 033244 8 CVKKAYKDVSLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVL 87 (124)
Q Consensus 8 ~~~~~~~~m~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL 87 (124)
|++..|+.|.-..+|+++...+ ++|. +....+.++.+|++||.+++... ..+.+.+++||||+|
T Consensus 126 ip~~lPaL~~A~ki~~raa~~G--fdw~---~~~~~~~k~~EE~~El~~a~~~~-----------~~~~~~ieeElGDlL 189 (248)
T TIGR00444 126 VPRTLPALMRAAKIQKRCAKVG--FDWE---DVSPVWDKVYEELDEVMYEARQA-----------VVEQNKLEEEMGDLL 189 (248)
T ss_pred CcccCCHHHHHHHHHHHHHHcC--CCCC---CcHHHHHHHHHHHHHHHHHHhcc-----------ccchHHHHHHHHHHH
Confidence 5667788899999999998875 7787 45568999999999999998621 235678999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 033244 88 LYLIQLADVCGLDLGQAALAKIVKNARKYPVI 119 (124)
Q Consensus 88 ~~l~~lA~~~giDle~al~~k~~k~~~R~~~~ 119 (124)
|.|+++|+++|||++.||...+.||.+||..-
T Consensus 190 FalvnlAr~~giDpE~ALr~a~~KF~~Rf~~~ 221 (248)
T TIGR00444 190 FATVNLARHLKTDAEIALQKANEKFERRFREV 221 (248)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999754
No 6
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=99.53 E-value=6.4e-14 Score=106.03 Aligned_cols=78 Identities=24% Similarity=0.320 Sum_probs=72.0
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHH---HHHcC-CCHHHHHH
Q 033244 31 VRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQL---ADVCG-LDLGQAAL 106 (124)
Q Consensus 31 ~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~l---A~~~g-iDle~al~ 106 (124)
.++|++.+|+.+++..+.||+.||.++|. ..+.+++++||||+|+.++.+ |+..| +|+++++.
T Consensus 11 GcpWd~~Qt~~sl~~~l~EE~~El~~Ai~-------------~~d~~~l~eELGDlL~qvv~~a~iar~~g~f~~edvl~ 77 (248)
T TIGR00444 11 GCPWDKKQTFQSLIPYTLEETYEVLEAIA-------------REDFDDLREELGDLLLQVVFYAQMAQEEGYFDFDDVCA 77 (248)
T ss_pred CcCCCcccChHHHHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 48999999999999999999999999997 357889999999999999988 58999 99999999
Q ss_pred HHHHHHHhhcCCccc
Q 033244 107 AKIVKNARKYPVINQ 121 (124)
Q Consensus 107 ~k~~k~~~R~~~~~~ 121 (124)
...+|+++||||.+.
T Consensus 78 ~~~~K~irRhphVf~ 92 (248)
T TIGR00444 78 GISEKLVRRHPHVFA 92 (248)
T ss_pred HHHHHHHhhchhhhh
Confidence 999999999999764
No 7
>PRK12334 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=99.50 E-value=1.6e-13 Score=105.02 Aligned_cols=92 Identities=25% Similarity=0.326 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 033244 17 SLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADV 96 (124)
Q Consensus 17 ~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~ 96 (124)
.+..+++.+...+..++|++.+|...++..+.||+.|+.++|. .++.+++++||||+|+.++.+|+.
T Consensus 63 aL~~a~~I~~rlr~~gpWd~~QTh~sl~~~l~EE~~El~eAI~-------------~~d~~~l~EELGDlLfqVvf~Ari 129 (277)
T PRK12334 63 RLLDAVAVMDRLRSPGPWESEQTHRSLARYLLEETYELLDAIE-------------SGDRDELREELGDVLLQVLFHARI 129 (277)
T ss_pred HHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555557999999988999999999999999996 457889999999999999999999
Q ss_pred cCCCHH------HHHHHHHHHHHhhcCCccc
Q 033244 97 CGLDLG------QAALAKIVKNARKYPVINQ 121 (124)
Q Consensus 97 ~giDle------~al~~k~~k~~~R~~~~~~ 121 (124)
+++|++ +++....+|+.+||||.+.
T Consensus 130 a~~~~e~~F~~~dvl~~~~~KfirRhPhVf~ 160 (277)
T PRK12334 130 AEEAPEDPFDIDDVAATLVAKLVRRHPHVFA 160 (277)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHhHHhcc
Confidence 977665 7999999999999998764
No 8
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=99.49 E-value=3.1e-13 Score=99.23 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHH--hcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 033244 19 QELRDRLAEFAE--VRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADV 96 (124)
Q Consensus 19 ~elq~~i~~~~~--~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~ 96 (124)
.+|...+..... .+.|++.+|+.++...+.||+.||.++|. .++.+++.+||||||+.++-.|..
T Consensus 2 ~~L~~im~~LR~p~GCPWDr~QT~~SL~~yllEE~yEv~dAI~-------------~~d~~~l~EELGDlLlqVvfha~i 68 (204)
T PRK12333 2 ERLLEVMRRLRGPDGCPWDREQTHESLRPYLLEEAAEAVDALS-------------EGDPQELAEELGDVLLQVAFHSVI 68 (204)
T ss_pred HHHHHHHHHHhCCCCCCCccccCHHHHHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456667776665 38999999999999999999999999997 357899999999999999866665
Q ss_pred c----CCCHHHHHHHHHHHHHhhcCCccc
Q 033244 97 C----GLDLGQAALAKIVKNARKYPVINQ 121 (124)
Q Consensus 97 ~----giDle~al~~k~~k~~~R~~~~~~ 121 (124)
. .+++++++..-.+|+.+|+||.+.
T Consensus 69 aee~g~F~~~DV~~~i~~KlirRHPHVFg 97 (204)
T PRK12333 69 AEEEGRFTYPDVERGIVEKLIRRHPHVFG 97 (204)
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCccCC
Confidence 4 389999999999999999999874
No 9
>PF12643 MazG-like: MazG-like family
Probab=99.14 E-value=8.1e-11 Score=77.64 Aligned_cols=79 Identities=38% Similarity=0.561 Sum_probs=57.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHH
Q 033244 32 RGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADVCGLD---LGQAALAK 108 (124)
Q Consensus 32 ~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~~giD---le~al~~k 108 (124)
++|..++.+...++. |++|+.+...+ | .+...+.+.+|||||++|+..||+.+|+| +++++..|
T Consensus 3 rn~k~ie~lK~~ll~---el~elfq~~~~------~----~~~~~e~i~deLAdvii~~ylLa~rLGid~~~lD~~i~~K 69 (98)
T PF12643_consen 3 RNWKQIENLKDELLS---ELLELFQWLTS------G----SEVAQEAIKDELADVIIYCYLLADRLGIDFRELDEIIKEK 69 (98)
T ss_pred hhHHHHHhHHHHHHH---HHHHHHhhccc------C----cchHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 345545555444333 66666554431 1 12456899999999999999999999999 99999999
Q ss_pred HHHHHhhcCC-ccccC
Q 033244 109 IVKNARKYPV-INQKS 123 (124)
Q Consensus 109 ~~k~~~R~~~-~~~~~ 123 (124)
+.++...||. ++..|
T Consensus 70 L~~~~~k~~~~Ek~~g 85 (98)
T PF12643_consen 70 LKKNIEKYPVLEKWYG 85 (98)
T ss_pred HHhcccccchHHHHhc
Confidence 9999999998 44333
No 10
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=99.14 E-value=9.2e-11 Score=92.06 Aligned_cols=93 Identities=19% Similarity=0.309 Sum_probs=76.6
Q ss_pred hhccccCCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHH
Q 033244 7 ECVKKAYKDVSLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDV 86 (124)
Q Consensus 7 ~~~~~~~~~m~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDv 86 (124)
.+++-+|+.|--.++|+...+.. ++|. ..+..+.++.||.-|..+..+ | -.+..+++|+||+
T Consensus 363 ~ipK~lpal~~a~klqkKaakvg--FD~~---~ve~~w~k~~Ee~~e~~ev~~-------g------~h~~~~a~efgd~ 424 (488)
T COG3956 363 KIPKILPALILAEKLQKKAAKVG--FDWA---NVEEAWDKVLEEMREVKEVYK-------G------IHRDRIAEEFGDL 424 (488)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcC--CCHH---hHHHHHHHHHHHhhhHHHHHh-------c------hhHHHHHHHhhhh
Confidence 45666777788888999887754 6666 566789999999999555433 1 1467899999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 033244 87 LLYLIQLADVCGLDLGQAALAKIVKNARKYP 117 (124)
Q Consensus 87 L~~l~~lA~~~giDle~al~~k~~k~~~R~~ 117 (124)
||.++++|++++|++++|+....+||++||.
T Consensus 425 lf~lvniarfy~i~~eeal~~tndkf~rrf~ 455 (488)
T COG3956 425 LFSLVNIARFYDIDSEEALNYTNDKFIRRFY 455 (488)
T ss_pred hhhhhhHHHHhcCCHHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999973
No 11
>PF01503 PRA-PH: Phosphoribosyl-ATP pyrophosphohydrolase; InterPro: IPR021130 Phosphoribosyl-ATP pyrophosphatase, 3.6.1.31 from EC catalyses the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O = 5-phosphoribosyl-AMP + PPi The Neurospora crassa enzyme also catalyzes the reactions of histidinol dehydrogenase (1.1.1.23 from EC) and phosphoribosyl-AMP cyclohydrolase (3.5.4.19 from EC). This entry also includes the Bacillus subtilis Cof proteins, which catalyze the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate []. ; PDB: 2A7W_K 3NL9_A 1YXB_D 1YVW_A 2YFD_C 2YFC_B 2YF3_C 2YF4_A 2YEU_E 2YF9_A ....
Probab=98.81 E-value=5.6e-08 Score=62.06 Aligned_cols=57 Identities=35% Similarity=0.424 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 033244 43 LLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADVCGLDLGQAALAKIVKN 112 (124)
Q Consensus 43 ~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~~giDle~al~~k~~k~ 112 (124)
...++.||++|+..+.+ ..++.++.+|+||+++.++.++...|+|+++++.+-...|
T Consensus 27 ~~~kl~EE~~E~~~A~~-------------~~d~~~~~~e~aDlly~~~~~~~~~gi~~~~v~~ev~~~N 83 (83)
T PF01503_consen 27 RLKKLGEEAGELIEAAK-------------NGDKEEVADELADLLYHLLGLLASMGIDLDEVFDEVHRRN 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHH-------------CSHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 57788999999999987 4589999999999999999999999999999998866554
No 12
>PLN02346 histidine biosynthesis bifunctional protein hisIE
Probab=98.78 E-value=6e-08 Score=74.01 Aligned_cols=85 Identities=21% Similarity=0.369 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHh----c---CCCC--CCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHH
Q 033244 17 SLQELRDRLAEFAEV----R---GWKQ--YHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVL 87 (124)
Q Consensus 17 ~i~elq~~i~~~~~~----~---~w~~--~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL 87 (124)
.+.+|.+.|.+-... . -|-. ++++.....++.||++|++.+..+ .++++++.+|+||+|
T Consensus 163 ~L~~L~~~I~~Rk~~~~~~~~e~SYT~~L~~~~~~I~kKlgEEA~EliiAa~~------------~~dre~lieElADLL 230 (271)
T PLN02346 163 TLYSLEETIQQRKEEAVPQGGKPSWTKRLLQDPELLCSKIREEAGELCQTLEE------------NEGKERTASEMADVL 230 (271)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCchHHHHhcCHHHHHHHHHHHHHHHHHHHHh------------cCCHHHHHHHHHHHH
Confidence 578888888764432 1 1100 024555778999999999998731 356899999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 033244 88 LYLIQLADVCGLDLGQAALAKIVKNARKYP 117 (124)
Q Consensus 88 ~~l~~lA~~~giDle~al~~k~~k~~~R~~ 117 (124)
++++.++...|||+++++ .++.+|+.
T Consensus 231 yHlLVLl~~~GIsleeV~----~eL~~R~~ 256 (271)
T PLN02346 231 YHAMVLLAKQGVKMEDVL----EVLRKRFS 256 (271)
T ss_pred HHHHHHHHHcCCCHHHHH----HHHHHhhc
Confidence 999999999999999998 46677764
No 13
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=98.77 E-value=7.8e-08 Score=75.80 Aligned_cols=92 Identities=25% Similarity=0.387 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 033244 17 SLQELRDRLAEFAEV--RGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLA 94 (124)
Q Consensus 17 ~i~elq~~i~~~~~~--~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA 94 (124)
.+..+.+.+...+.. +.|++.++...+--.|.||.-|+.++|. +++..++-+||||||+.++..|
T Consensus 233 dF~~~~~ii~~LrgenGCPWDk~QtHqtlKryliEE~yEl~EAId-------------~edddhmvEELGDvLlQVllHa 299 (488)
T COG3956 233 DFYTLRNIIETLRGENGCPWDKKQTHQTLKRYLIEECYELLEAID-------------EEDDDHMVEELGDVLLQVLLHA 299 (488)
T ss_pred hHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhh-------------ccchHhHHHHHHHHHHHHHHHH
Confidence 566677777776654 7799999888888889999999999996 5678899999999999999887
Q ss_pred HHc---C-CCHHHHHHHHHHHHHhhcCCccc
Q 033244 95 DVC---G-LDLGQAALAKIVKNARKYPVINQ 121 (124)
Q Consensus 95 ~~~---g-iDle~al~~k~~k~~~R~~~~~~ 121 (124)
..- | +++++++..-.+|+.+|+||.+.
T Consensus 300 qIGkdeGyf~I~dVI~~i~~KMIrRHPHvF~ 330 (488)
T COG3956 300 QIGKDEGYFNINDVISGISEKMIRRHPHVFK 330 (488)
T ss_pred hhcccCCeeeHHHHHHHHHHHHHHhCccccc
Confidence 543 2 79999999999999999999753
No 14
>PRK12334 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=98.64 E-value=6.4e-08 Score=74.40 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 033244 77 EHLEEELSDVLLYLIQLADVCGLDLGQAALAKIVKNARKYPVI 119 (124)
Q Consensus 77 ~~l~eELgDvL~~l~~lA~~~giDle~al~~k~~k~~~R~~~~ 119 (124)
.++++||||+||.++++|+.+|||+|.||.....||++||..-
T Consensus 221 ~~~e~e~GdlLf~lv~~ar~~~idpE~aLr~a~~kf~~rf~~~ 263 (277)
T PRK12334 221 EDSEDELGALLLALVAVAVAAGVDAEAALRAAVRDFRDRIRAA 263 (277)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999998654
No 15
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=98.55 E-value=2.4e-07 Score=68.27 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 033244 82 ELSDVLLYLIQLADVCGLDLGQAALAKIVKNARKYPVI 119 (124)
Q Consensus 82 ELgDvL~~l~~lA~~~giDle~al~~k~~k~~~R~~~~ 119 (124)
|+||+||.++++|+++|||++.||.....||..+.|..
T Consensus 165 E~GDlLFalvn~aR~~~idpE~ALr~an~Kf~~~~~~~ 202 (204)
T PRK12333 165 GVAEALWAVVAWARAEGIDPEIALRERTEKACAQLPDE 202 (204)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999998764
No 16
>TIGR03188 histidine_hisI phosphoribosyl-ATP pyrophosphohydrolase. This enzyme, phosphoribosyl-ATP pyrophosphohydrolase, catalyses the second step in the histidine biosynthesis pathway. It often occurs as a fusion protein. This model a somewhat narrower scope than Pfam model pfam01503, as some paralogs that appear to be functionally distinct are excluded from this model.
Probab=98.26 E-value=1.1e-05 Score=51.76 Aligned_cols=55 Identities=25% Similarity=0.250 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 033244 40 PRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADVCGLDLGQAALA 107 (124)
Q Consensus 40 ~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~~giDle~al~~ 107 (124)
+...+-++.||..|+.-+.+ .++++++..|.||+++.++.+....||++++++..
T Consensus 29 ~~ki~kKvgEEa~E~iiAa~-------------~~d~~~~~~E~ADLlYHllVlL~~~gi~~~dV~~e 83 (84)
T TIGR03188 29 LDKILKKVGEEAVEVVIAAK-------------NGDKEELVYEAADLLYHLLVLLAAQGVSLEDVLAE 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Confidence 34467899999999999986 45789999999999999999999999999998763
No 17
>PRK00400 hisE phosphoribosyl-ATP pyrophosphatase; Validated
Probab=98.19 E-value=2.5e-05 Score=52.15 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 033244 41 RNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADVCGLDLGQAALAKIV 110 (124)
Q Consensus 41 ~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~~giDle~al~~k~~ 110 (124)
...+-++.||..|+..+.+ .++++++..|.||+++.++.+....||++++++..-..
T Consensus 34 ~ki~kKlgEEa~E~i~A~~-------------~~d~~~~i~E~ADLlYHllVlL~~~gv~~~dV~~eL~~ 90 (105)
T PRK00400 34 DKILKKVGEEATEVVIAAK-------------DGDREELVYEIADLLYHLLVLLAARGISLEDVLAELER 90 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3457799999999999986 45789999999999999999999999999998765433
No 18
>PF04447 DUF550: Protein of unknown function (DUF550); InterPro: IPR007538 This entry represents the N terminus of a protein of unknown function, found in a range of Proteobacteria and a few P22-like dsDNA virus particles.
Probab=98.17 E-value=2.2e-05 Score=51.49 Aligned_cols=76 Identities=29% Similarity=0.305 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCCHH
Q 033244 23 DRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADVCGLDLG 102 (124)
Q Consensus 23 ~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~~giDle 102 (124)
.+..+|.. +.|.....|...+..|..|+-|++++- .+ + .|-+||++.+++.+++.||.++
T Consensus 4 ~~~a~wS~-~TFGp~~~p~g~lkHl~kE~~E~~~~p---------------~D---l-~EwaDv~~Ll~D~~~RaGis~~ 63 (100)
T PF04447_consen 4 RRHAEWSD-RTFGPGVGPVGPLKHLSKEALEAEAAP---------------GD---L-SEWADVQILLWDGARRAGISPE 63 (100)
T ss_pred HHHHHHHH-hhcCCCCCcchHHHHHHHHHHHHHhCC---------------CC---H-HHHHHHHHHHHHHHHHcCCCHH
Confidence 34455553 334444467788999999999986652 12 2 3999999999999999999877
Q ss_pred ---HHHHHHHHHHHhh-cCC
Q 033244 103 ---QAALAKIVKNARK-YPV 118 (124)
Q Consensus 103 ---~al~~k~~k~~~R-~~~ 118 (124)
+|+..|+++|+.| +|.
T Consensus 64 ~i~~A~~~K~~iN~aR~Wp~ 83 (100)
T PF04447_consen 64 QIIDAMEAKLAINKARQWPD 83 (100)
T ss_pred HHHHHHHHHHHhccccCCCC
Confidence 6778899999988 654
No 19
>COG0140 HisI Phosphoribosyl-ATP pyrophosphohydrolase [Amino acid transport and metabolism]
Probab=97.99 E-value=0.00012 Score=47.63 Aligned_cols=56 Identities=25% Similarity=0.233 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 033244 40 PRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADVCGLDLGQAALAK 108 (124)
Q Consensus 40 ~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~~giDle~al~~k 108 (124)
..-.+-++.||.+|+.-+-. .++++.+..|.+|+++.++.+....|+++++++.+-
T Consensus 29 ~~ki~kKvGEEa~E~~iAa~-------------~~d~e~l~~E~ADLlYH~lVlL~~~gv~l~dV~~eL 84 (92)
T COG0140 29 IDKIAKKVGEEAVEVILAAK-------------DEDKEELVSEAADLLYHLLVLLAAQGLSLEDVLREL 84 (92)
T ss_pred HHHHHHHHhHHHHHHHHHHH-------------hcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33467889999999988865 457899999999999999999999999999987653
No 20
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=97.92 E-value=9e-05 Score=54.74 Aligned_cols=78 Identities=24% Similarity=0.256 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHH
Q 033244 17 SLQELRDRLAEFAEVRGWKQY------HSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYL 90 (124)
Q Consensus 17 ~i~elq~~i~~~~~~~~w~~~------~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l 90 (124)
.+.+|.+.|.+-.....=..+ .++...+-++.||+.|++-|.+ .++++++..|.||+++.+
T Consensus 115 ~L~~L~~~I~~Rk~~~pe~SYT~~L~~~G~~kI~kKvgEEA~E~iiAak-------------~~d~~~li~E~ADLlYHl 181 (203)
T PRK02759 115 FLSQLEQLIAERKNAPPEGSYTAKLFASGTKRIAQKVGEEAVEVVLAAK-------------NNDKEELINEAADLLYHL 181 (203)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHH
Confidence 567777777664322110000 1233357799999999999986 457899999999999999
Q ss_pred HHHHHHcCCCHHHHHHH
Q 033244 91 IQLADVCGLDLGQAALA 107 (124)
Q Consensus 91 ~~lA~~~giDle~al~~ 107 (124)
+.+....||++++++.+
T Consensus 182 lVlL~~~gv~l~dV~~e 198 (203)
T PRK02759 182 LVLLADQGLSLSDVIAE 198 (203)
T ss_pred HHHHHHcCCCHHHHHHH
Confidence 99999999999998764
No 21
>PHA02602 56 dCTP pyrophosphatase; Provisional
Probab=97.26 E-value=0.0054 Score=43.72 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=70.5
Q ss_pred hhccccCCcC-CHHHHHHHHHHHHH-hc-CCCCCCC-H----------HHHHHHHHHHHHHHHHHH--------------
Q 033244 7 ECVKKAYKDV-SLQELRDRLAEFAE-VR-GWKQYHS-P----------RNLLLALVGEVGELSEIF-------------- 58 (124)
Q Consensus 7 ~~~~~~~~~m-~i~elq~~i~~~~~-~~-~w~~~~~-~----------~~~~~~l~eE~gElae~v-------------- 58 (124)
.|+....+++ .+-+||+.+..--. .+ .|.+..+ . ...-..+..|+.||..++
T Consensus 23 ~~l~~~~dpLq~m~dmQ~~lq~~l~~~~p~~~~~p~~l~t~ge~l~W~~~~~~ai~dE~rEL~t~Lggmsng~k~~s~~W 102 (172)
T PHA02602 23 DILAENKDPLQVMLDMQKSLQVRLANDKPEYNPHPDELKTCGEILDWLRNQDDYIADETRELYTSLGGMSNGEKDASAVW 102 (172)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcccccccCCCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccc
Confidence 3555555555 67788887774432 23 2432111 1 112334566888887732
Q ss_pred H-hhhhh----hcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 033244 59 Q-WRGEV----ARGLPNWSSDDKEHLEEELSDVLLYLIQLADVCGLDLGQAALAKIVKNARK 115 (124)
Q Consensus 59 ~-~~~~~----~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~~giDle~al~~k~~k~~~R 115 (124)
+ |+... ....+.+++++..++..||-|++..+++++..+|+++++++...+.||.--
T Consensus 103 K~Wk~~h~e~rn~~f~~ls~eD~le~k~ElID~~HF~l~~~~~LG~t~eeI~~aY~~KN~lN 164 (172)
T PHA02602 103 KPWKANHGEARNRLFSDLSPEDQLEIKFELIDQLHFVLNKFIALGMDAEEIFKLYYLKNAEN 164 (172)
T ss_pred hHhhhhhhhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHH
Confidence 1 22221 122334556788899999999999999999999999999999988888743
No 22
>PF08761 dUTPase_2: dUTPase; InterPro: IPR014871 2-Deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) catalyses the hydrolysis of dUTP to dUMP and pyrophosphate (3.6.1.23 from EC). Members of this family have a novel all-alpha fold and are unrelated to the all-beta fold found in dUTPases of the majority of organisms. This family contains both dUTPase homologues of dUTPase including dCTPase of phage T4. ; PDB: 2YB0_E 2YAZ_B 2YAY_A 2CJE_A 1OGK_A 1OGL_A 1W2Y_B 2CIC_A.
Probab=96.35 E-value=0.007 Score=43.22 Aligned_cols=84 Identities=24% Similarity=0.227 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCCC-C-------HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHH
Q 033244 17 SLQELRDRLAEFAEVRGWKQYH-S-------PRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLL 88 (124)
Q Consensus 17 ~i~elq~~i~~~~~~~~w~~~~-~-------~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~ 88 (124)
++-++|+.+........|.... + ....++++..|+||+++.++.. ..+... .+.+.+.+.+|+.|++.
T Consensus 4 ~l~~~Qk~Ld~~i~~~~~~~~~~~~~~~~~~~~~~~~Al~vE~~El~ne~~~f--K~Wk~~--~~~~~~~ileE~vD~lH 79 (167)
T PF08761_consen 4 KLFEMQKELDDRINKKWNLDGSKKNGEVADWIKNKILALIVELGELANETRCF--KYWKKK--KPVDKEKILEEYVDILH 79 (167)
T ss_dssp HHHHHHHHHHHHHCTTHGGGSBHHHS-HHHHH----HHHHHHHHHHHTTS------SSSST--T---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHcch--HhhcCC--CCCCHHHHHHHHHHHHH
Confidence 3556777777655332221111 1 1123589999999999987311 112211 13578999999999999
Q ss_pred HHHHHHHHcCCCHHHH
Q 033244 89 YLIQLADVCGLDLGQA 104 (124)
Q Consensus 89 ~l~~lA~~~giDle~a 104 (124)
.++.++..+|++....
T Consensus 80 F~lS~~~~~~~~~~~~ 95 (167)
T PF08761_consen 80 FLLSIGLELNYDDEKE 95 (167)
T ss_dssp HHHHHHHHHHCT-GGG
T ss_pred HHHHHHHHcCCchhhh
Confidence 9999999999887763
No 23
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=95.59 E-value=0.069 Score=41.37 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHhh
Q 033244 39 SPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADVCGLDLGQAALA---KIVKNARK 115 (124)
Q Consensus 39 ~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~~giDle~al~~---k~~k~~~R 115 (124)
++.-+-.++.||+.||.++.. +.++.-|+||++...+.++-..|+.++++... |..|.-+|
T Consensus 271 D~aLL~aKI~EEAeELc~a~~----------------k~e~~wEmADl~YfA~~~lv~~gVsl~Dv~~~LnmkhrKvtrr 334 (359)
T KOG4311|consen 271 DDALLCAKIREEAEELCRALE----------------KNETPWEMADLLYFAMVLLVKRGVSLEDVLEVLNMKHRKVTRR 334 (359)
T ss_pred ChHHHHHHHHHHHHHHHHhhc----------------ccCChHHHHHHHHHHHHHHHhcCCcHHHHHHHhhhHHHhHhhh
Confidence 444466788999999999864 23478899999999999999999999877654 44555455
No 24
>COG4508 Dimeric dUTPase [Carbohydrate transport and metabolism]
Probab=94.27 E-value=0.33 Score=33.97 Aligned_cols=74 Identities=24% Similarity=0.266 Sum_probs=49.3
Q ss_pred HHHHHHHH-HHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHcC
Q 033244 21 LRDRLAEF-AEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADVCG 98 (124)
Q Consensus 21 lq~~i~~~-~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~~g 98 (124)
+|+.+... -++++.-.+.-....+++|..|+||||...+ +-..+..+ .+-+...+-+|-.|.|..++.+.-.+.
T Consensus 9 lQ~~Ld~~I~~~~nl~~~~l~~~~aLAL~Ve~gELAnetr--cFkYW~~~--~p~~~~~ilEEY~dglHF~lsigl~~~ 83 (161)
T COG4508 9 LQEKLDNLILKKCNLLNFELVQKVALALLVEVGELANETR--CFKYWKLS--KPIDLAKILEEYSDGLHFLLSIGLYYQ 83 (161)
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHhhhhh--HHHhhhhc--CCCcHHHHHHHHhhhHHHHHHhHHHHH
Confidence 45555433 3445554443344578999999999998876 12233222 255788999999999999988776553
No 25
>COG4696 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.57 E-value=0.3 Score=34.60 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=41.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh-cCCcccc
Q 033244 73 SDDKEHLEEELSDVLLYLIQLADVCGLDLGQAALAKIVKNARK-YPVINQK 122 (124)
Q Consensus 73 ~~~~~~l~eELgDvL~~l~~lA~~~giDle~al~~k~~k~~~R-~~~~~~~ 122 (124)
+.+.....++|+|+|.....--..+|||++.++.....-|..+ ||.++.+
T Consensus 89 e~dL~gqvdalaDlLYfTYGslvlmGiDp~~iF~~VHrANm~KifpdGk~h 139 (180)
T COG4696 89 EQDLIGQVDALADLLYFTYGSLVLMGIDPDAIFAAVHRANMGKIFPDGKAH 139 (180)
T ss_pred ccchhhHHHHHHHHHHHhhhhHHHhcCCHHHHHHHHHHhhhhhcCCCCccc
Confidence 3456678899999999988888899999999999998888877 8776643
No 26
>COG4997 Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=1.5 Score=28.15 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 033244 79 LEEELSDVLLYLIQLADVCGLDLGQAALAKIVKNARK 115 (124)
Q Consensus 79 l~eELgDvL~~l~~lA~~~giDle~al~~k~~k~~~R 115 (124)
-.+||+|+|-.+..+|..+|++-+........|-..|
T Consensus 53 ~lEeLadllEvi~~ia~a~gfske~l~~~R~~Kk~e~ 89 (95)
T COG4997 53 NLEELADLLEVISRIAEARGFSKENLEALRLQKKLEK 89 (95)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 3578999999999999999999998888777776666
No 27
>COG1694 MazG Predicted pyrophosphatase [General function prediction only]
Probab=87.08 E-value=3.1 Score=26.92 Aligned_cols=53 Identities=30% Similarity=0.218 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHHHHHHH-HhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHH
Q 033244 39 SPRNLLLALVGEVGELSEIF-QWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADVCGLDLGQ 103 (124)
Q Consensus 39 ~~~~~~~~l~eE~gElae~v-~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~~giDle~ 103 (124)
+....+..-+.|+.+..... ... ..++++.+.|++|++++..++.....++++
T Consensus 30 ~~~~~l~eE~gEv~eai~~~~~~~------------~l~eELgDvL~~v~~~a~~~~~~~~~~~~~ 83 (102)
T COG1694 30 SLLLYLVEEAGEVAEAIRKEEDLE------------DLKEELGDVLADVLFLANLLDIDLEFALEE 83 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34445666777777777666 331 357888999999999999888888888774
No 28
>COG3079 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.42 E-value=34 Score=24.84 Aligned_cols=67 Identities=28% Similarity=0.374 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 033244 19 QELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLA 94 (124)
Q Consensus 19 ~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA 94 (124)
+.+.+|+..|-...|..+ | .+.+++.|+||..+.+.....-++.. +++.+++++-|=.|+=|+-..+
T Consensus 100 DAL~eW~nhFL~GlGL~~---~--~l~~~~gE~~EaldDL~~iaQlg~De----ded~EE~~~~leEiiEyvRva~ 166 (186)
T COG3079 100 DALAEWCNHFLLGLGLTQ---P--KLSKLTGEAGEALDDLANIAQLGYDE----DEDQEELEESLEEIIEYVRVAA 166 (186)
T ss_pred HHHHHHHHHHHHhhcccc---c--chhhhcccHHHHHHHHHHHHHhcCCc----cccHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444331 1 36668889999888877544333321 3566677766767766654433
No 29
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=66.33 E-value=34 Score=22.39 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=59.0
Q ss_pred hhccccCCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHH
Q 033244 7 ECVKKAYKDVSLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDV 86 (124)
Q Consensus 7 ~~~~~~~~~m~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDv 86 (124)
.++.+ +.+|..++...+..|+...| ..+.+..+..++....+.++ .+...+-..|++|
T Consensus 9 ~I~~n--~~lt~~e~~~~l~~Wa~~~~------v~~~~~~f~~~~~~~~~~~~--------------~~~~~vi~~L~~a 66 (113)
T PF02520_consen 9 QIFQN--PNLTKAEIEEQLDEWAEKYG------VQDQYNEFKAQVQAQKEEVR--------------KNVTAVISNLSSA 66 (113)
T ss_pred HHHcC--CCCCHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 34555 68999999999999997654 33345555554444433333 1345666778888
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 033244 87 LLYLIQLADVCGLDLGQAALAKIVKNARKYPVI 119 (124)
Q Consensus 87 L~~l~~lA~~~giDle~al~~k~~k~~~R~~~~ 119 (124)
+--|..+..--++...+. ..++..+...||.+
T Consensus 67 ~~~l~~I~~n~~lT~~q~-~~~I~~l~~~~~~e 98 (113)
T PF02520_consen 67 FAKLSAILDNKSLTRQQQ-QEAIDALRKQYPEE 98 (113)
T ss_pred HHHHHHHHcCcccCHHHH-HHHHHHHHHHCCHH
Confidence 888888887666666543 45666676777765
No 30
>PF10543 ORF6N: ORF6N domain; InterPro: IPR018873 This entry represents an N-terminal DNA-binding domain found in a wide range of proteins from bacterial and eukaryotic DNA viruses and there bacterial homologues, they include the poxvirus D6R/N1R and baculoviral Bro protein families. The KilA-N domain is considered to be homologous to the fungal DNA-binding APSES domain. Both the KilA-N and APSES domains share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease []. This entry represents the amino-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018876 from INTERPRO.
Probab=62.08 E-value=15 Score=23.25 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 033244 89 YLIQLADVCGLDLGQAALAKIVKNARKYPVI 119 (124)
Q Consensus 89 ~l~~lA~~~giDle~al~~k~~k~~~R~~~~ 119 (124)
..-++|..+|++ ...+......|+.||+.+
T Consensus 14 t~~~lA~~yg~~-~~~i~~~~~rN~~rF~eg 43 (88)
T PF10543_consen 14 TDEDLAELYGVE-TKTINRNFKRNKDRFIEG 43 (88)
T ss_pred EHHHHHHHhCcC-HHHHHHHHHHHHHhCCCC
Confidence 345789999998 778899999999999954
No 31
>PHA02591 hypothetical protein; Provisional
Probab=56.23 E-value=13 Score=23.61 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=28.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 033244 73 SDDKEHLEEELSDVLLYLIQLADVCGLDLGQA 104 (124)
Q Consensus 73 ~~~~~~l~eELgDvL~~l~~lA~~~giDle~a 104 (124)
+++.-.++.||.+.=+..-.+|+.+|++.+.+
T Consensus 45 ~dd~~~vA~eL~eqGlSqeqIA~~LGVsqetV 76 (83)
T PHA02591 45 EDDLISVTHELARKGFTVEKIASLLGVSVRKV 76 (83)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 55677899999999999999999999997754
No 32
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=56.19 E-value=33 Score=18.88 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 033244 88 LYLIQLADVCGLDLGQAALAKIVKNARKYP 117 (124)
Q Consensus 88 ~~l~~lA~~~giDle~al~~k~~k~~~R~~ 117 (124)
--|-.+|...||+..+.+.++++-+..+|.
T Consensus 15 ~~L~~ls~~t~i~~S~Ll~eAle~~l~ky~ 44 (44)
T PF12651_consen 15 EKLKELSEETGIPKSKLLREALEDYLEKYE 44 (44)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhcC
Confidence 345678999999999999999999888773
No 33
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=56.11 E-value=11 Score=21.84 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccccC
Q 033244 76 KEHLEEELSDVLLYLIQLADVCGLDLGQAALAKIVKNARKYPVINQKS 123 (124)
Q Consensus 76 ~~~l~eELgDvL~~l~~lA~~~giDle~al~~k~~k~~~R~~~~~~~~ 123 (124)
..+.+.+||=..-.|-.+|+.+||. |||+.+.++
T Consensus 18 ~~eAA~~Lgv~~T~LKr~CR~~GI~--------------RWP~Rkl~S 51 (52)
T PF02042_consen 18 IKEAAKELGVSVTTLKRRCRRLGIP--------------RWPYRKLKS 51 (52)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCC--------------CCCchhhcc
Confidence 3445555665566666666666665 788777664
No 34
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.61 E-value=64 Score=23.93 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=52.0
Q ss_pred hccccCCcCCHHHHHHHHHHHHH----hcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHH
Q 033244 8 CVKKAYKDVSLQELRDRLAEFAE----VRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEEL 83 (124)
Q Consensus 8 ~~~~~~~~m~i~elq~~i~~~~~----~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eEL 83 (124)
|+....+.+..+=+...+.-.+- --+|-.+..|-+.+..+..|++|+.+.+.... .. ..+.
T Consensus 81 ~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~~ev~E~vreLse~~~E~~~~~--------lt----~~vr--- 145 (204)
T COG3286 81 IFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPWSEVVELVRELSEVYREARFQP--------LT----RQVR--- 145 (204)
T ss_pred HHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCHHHHHHHHHHHHHHHHHHHhcc--------cc----chhh---
Confidence 44444454555555544443332 14565555666677778888888877765321 00 1111
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 033244 84 SDVLLYLIQLADVCGLDLGQAALAKIVKNARKY 116 (124)
Q Consensus 84 gDvL~~l~~lA~~~giDle~al~~k~~k~~~R~ 116 (124)
-.++.++..+|.|+++++.+..++=--|+
T Consensus 146 ----klVv~~S~~~~~~~dd~~eeave~Gll~e 174 (204)
T COG3286 146 ----KLVVAVSIVYGLDPDDAAEEAVELGLLEE 174 (204)
T ss_pred ----hhhhhhhhHhCCCHHHHHHHHHHhhhhhc
Confidence 12456677889999999988877644443
No 35
>PF06892 Phage_CP76: Phage regulatory protein CII (CP76); InterPro: IPR009679 This entry is represented by Bacteriophage 186, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny [].
Probab=52.07 E-value=74 Score=22.58 Aligned_cols=84 Identities=17% Similarity=0.108 Sum_probs=51.8
Q ss_pred hccccCCcCCHHHHHHHHHHH---------HHhcCCC--------CCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 033244 8 CVKKAYKDVSLQELRDRLAEF---------AEVRGWK--------QYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPN 70 (124)
Q Consensus 8 ~~~~~~~~m~i~elq~~i~~~---------~~~~~w~--------~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~ 70 (124)
+=|+.|-.+|+.++....... +.+.|.- ...+....++.++.|+|||+..+...... | .
T Consensus 41 LNP~q~H~Lt~~el~~i~~~Tgd~~il~~ll~~lg~v~v~lP~~~~~~~l~~~~l~~~a~~Gela~~a~ea~~d--g--r 116 (162)
T PF06892_consen 41 LNPEQPHKLTVDELIAITDATGDYRILDALLAELGCVPVVLPKNEAAKSLPERVLKATAEVGELAREALEALSD--G--R 116 (162)
T ss_pred cCCCCCCCCCHHHHHHHHHHhCCcHHHHHHHHHCCCeeecCCccccccCHHHHHHHHHHHHHHHHHHHHHHhcC--C--C
Confidence 345556668888887655433 3333321 11144567899999999999998743222 1 1
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHH
Q 033244 71 WSSDDKEHLEEELSDVLLYLIQLAD 95 (124)
Q Consensus 71 ~~~~~~~~l~eELgDvL~~l~~lA~ 95 (124)
++...+..+..++-+++-.+..+..
T Consensus 117 it~~er~~i~~~a~~ai~~l~ll~~ 141 (162)
T PF06892_consen 117 ITRSERNRIIKEANAAIRSLALLIN 141 (162)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344577788888887777765554
No 36
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=49.88 E-value=33 Score=21.19 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=21.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 033244 90 LIQLADVCGLDLGQAALAKIVKNARKY 116 (124)
Q Consensus 90 l~~lA~~~giDle~al~~k~~k~~~R~ 116 (124)
++..|+.+||++...+...+.+-.+|.
T Consensus 13 ll~~ar~~giNlS~~~e~~L~~~~~~~ 39 (72)
T PRK13710 13 SYQLLKAADVNISGLVNTAMQNEARRL 39 (72)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 567788999999988888887766654
No 37
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=49.77 E-value=30 Score=22.41 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=24.7
Q ss_pred HHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHhh
Q 033244 83 LSDVLLY-LIQLADVCGLDLGQAALAKIVKNARK 115 (124)
Q Consensus 83 LgDvL~~-l~~lA~~~giDle~al~~k~~k~~~R 115 (124)
++|+.++ ++..+..+|+|+...+..-++.+..|
T Consensus 71 iAD~~l~~~~~~~~~~g~~l~p~l~ay~~r~~~r 104 (114)
T cd03195 71 IADTDLALMLNRLVLNGDPVPERLRDYARRQWQR 104 (114)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCC
Confidence 7888877 44667888998766777777777666
No 38
>PF08761 dUTPase_2: dUTPase; InterPro: IPR014871 2-Deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) catalyses the hydrolysis of dUTP to dUMP and pyrophosphate (3.6.1.23 from EC). Members of this family have a novel all-alpha fold and are unrelated to the all-beta fold found in dUTPases of the majority of organisms. This family contains both dUTPase homologues of dUTPase including dCTPase of phage T4. ; PDB: 2YB0_E 2YAZ_B 2YAY_A 2CJE_A 1OGK_A 1OGL_A 1W2Y_B 2CIC_A.
Probab=49.70 E-value=45 Score=23.51 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 033244 83 LSDVLLYLIQLADVCGLDLGQAALAKIVKNAR 114 (124)
Q Consensus 83 LgDvL~~l~~lA~~~giDle~al~~k~~k~~~ 114 (124)
+-.++-.++.++..+|++.++.+..-+.||..
T Consensus 127 ~~~~~~~f~~l~~~lg~t~e~i~~aY~~KN~~ 158 (167)
T PF08761_consen 127 YQELFDLFLGLGELLGFTFEDIEKAYIEKNQV 158 (167)
T ss_dssp HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44556668889999999987777666666653
No 39
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=48.08 E-value=28 Score=26.10 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 033244 78 HLEEELSDVLLYLIQLADVCGLDLGQAALAKIVK 111 (124)
Q Consensus 78 ~l~eELgDvL~~l~~lA~~~giDle~al~~k~~k 111 (124)
....|||+||+.+....+.+..++++.+......
T Consensus 61 ~~s~~LG~vLmqisev~r~i~~~le~~lk~FH~e 94 (215)
T cd07644 61 LTSQSLGEILIQMSETQRKLSADLEVVFQTFHVD 94 (215)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999888765443
No 40
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=46.19 E-value=37 Score=24.42 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 033244 83 LSDVLLYLIQLADVCGLDLGQAALAKIVKNARKYPV 118 (124)
Q Consensus 83 LgDvL~~l~~lA~~~giDle~al~~k~~k~~~R~~~ 118 (124)
..||+|..+ +.+|+||.+.+.+-|.++-.-||+
T Consensus 36 CTDVViRA~---R~~g~DLq~lVheDm~~nf~~Yp~ 68 (164)
T PF06940_consen 36 CTDVVIRAY---RDAGYDLQKLVHEDMKANFSAYPR 68 (164)
T ss_pred cHHHHHHHH---HHcCCCHHHHHHHHHHHCHHhCCc
Confidence 457766654 569999999999999999999993
No 41
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=44.23 E-value=43 Score=21.15 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 033244 78 HLEEELSDVLLYLIQLADVCGLDLGQA 104 (124)
Q Consensus 78 ~l~eELgDvL~~l~~lA~~~giDle~a 104 (124)
....|..+++--+..++..+||++++.
T Consensus 17 ~~~~e~~~~~~~i~~~~~~~Gis~~el 43 (93)
T PF00816_consen 17 RRKQEREEAIAEIRELMAEYGISPEEL 43 (93)
T ss_dssp HHHHCCHHHHHHHHHHHHHTT--HHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHh
Confidence 344556677888889999999999998
No 42
>PF07362 CcdA: Post-segregation antitoxin CcdA; InterPro: IPR009956 This entry consists of several Enterobacterial post-segregation antitoxin CcdA proteins. The F plasmid-carried bacterial toxin, the CcdB protein, is known to act on DNA gyrase in two different ways. CcdB poisons the gyrase-DNA complex, blocking the passage of polymerases and leading to double-strand breakage of the DNA. Alternatively, in cells that overexpress CcdB, the A subunit of DNA gyrase (GyrA) has been found as an inactive complex with CcdB. Both poisoning and inactivation can be prevented and reversed in the presence of the F plasmid-encoded antidote, the CcdA protein [].; PDB: 3HPW_C 2H3C_A 2H3A_B 2ADN_B 2ADL_B.
Probab=43.85 E-value=27 Score=21.45 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhh
Q 033244 90 LIQLADVCGLDLGQAALAKIVKNARK 115 (124)
Q Consensus 90 l~~lA~~~giDle~al~~k~~k~~~R 115 (124)
|+.-|+.+||++..++...+.+-.++
T Consensus 13 Ll~~Ak~lgiNlS~~~e~aL~~~v~~ 38 (72)
T PF07362_consen 13 LLAEAKALGINLSATLEEALAEEVRR 38 (72)
T ss_dssp THHHHHHCT--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45678999999998888888777655
No 43
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=41.42 E-value=38 Score=25.57 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 033244 79 LEEELSDVLLYLIQLADVCGLDLGQAALAKIVKN 112 (124)
Q Consensus 79 l~eELgDvL~~l~~lA~~~giDle~al~~k~~k~ 112 (124)
...||||||+.+....+.+...+++.+......+
T Consensus 62 ~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~El 95 (226)
T cd07645 62 VSKELGHVLMEISDVHKKLNDSLEENFKKFHREI 95 (226)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999988888888776654433
No 44
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=38.61 E-value=75 Score=20.68 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=18.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 033244 75 DKEHLEEELSDVLLYLIQLADVCGLDLGQA 104 (124)
Q Consensus 75 ~~~~l~eELgDvL~~l~~lA~~~giDle~a 104 (124)
...++.+.+.+++ +-.+|+++|+|.++.
T Consensus 65 ~~~eL~~~I~~tl--vhEiah~fG~~~e~l 92 (97)
T PF06262_consen 65 SREELAELIRDTL--VHEIAHHFGISDEDL 92 (97)
T ss_dssp SHHHHHHHHHHHH--HHHHHHHTT--HHHH
T ss_pred CHHHHHHHHHHHH--HHHHHHHcCCCHHHh
Confidence 3445677776665 458999999998875
No 45
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=38.58 E-value=26 Score=18.00 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=11.5
Q ss_pred HHHHHcCCCHHHHHH
Q 033244 92 QLADVCGLDLGQAAL 106 (124)
Q Consensus 92 ~lA~~~giDle~al~ 106 (124)
.+|..+|++.++...
T Consensus 9 ~IA~~~~~~~~~l~~ 23 (44)
T TIGR02899 9 KIAKKYGVDFDELIQ 23 (44)
T ss_pred HHHHHHCcCHHHHHH
Confidence 578889999876654
No 46
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=37.78 E-value=1.3e+02 Score=20.49 Aligned_cols=85 Identities=14% Similarity=0.079 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHhc----------CCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhh---HHHHH
Q 033244 17 SLQELRDRLAEFAEVR----------GWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEH---LEEEL 83 (124)
Q Consensus 17 ~i~elq~~i~~~~~~~----------~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~---l~eEL 83 (124)
||.|+|.++.+.++.- --......-.+...|+.+..+|++.-+-. -.. ..+++...+ --.+|
T Consensus 1 SFvdyQt~mv~~ak~ia~~a~emv~ks~~~p~eL~~la~~lt~~y~~La~~~~~a----aat-~~~~ev~~~i~~~vq~L 75 (125)
T PF08913_consen 1 SFVDYQTRMVEAAKEIARTAQEMVTKSRTNPEELGTLANDLTHDYSQLAQDAKGA----AAT-TPSAEVQNRIKSAVQDL 75 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHH----HCC-SSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHH----HHc-CCCHHHHHHHHHHHHHH
Confidence 4678888887777641 00111123345677777888887765411 110 011222333 44678
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHH
Q 033244 84 SDVLLYLIQLADVCGLDLGQAAL 106 (124)
Q Consensus 84 gDvL~~l~~lA~~~giDle~al~ 106 (124)
|+-.+-|+.-|...-.+|++...
T Consensus 76 G~sc~~Lv~aag~~~~~P~d~~~ 98 (125)
T PF08913_consen 76 GMSCIELVQAAGAVQSNPSDPYA 98 (125)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHhCcCCCCCCchhH
Confidence 99999999989888888877653
No 47
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=36.79 E-value=1.1e+02 Score=19.19 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=21.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhh--cCC
Q 033244 91 IQLADVCGLDLGQAALAKIVKNARK--YPV 118 (124)
Q Consensus 91 ~~lA~~~giDle~al~~k~~k~~~R--~~~ 118 (124)
..++..+|+++.+|+...+....+. +|.
T Consensus 18 ~~i~~~lGl~~s~ai~~fl~qvv~~~~lPF 47 (83)
T TIGR02384 18 YAVFEELGLTPSTAIRMFLKQVIREQGLPF 47 (83)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhCCCCC
Confidence 4567889999999999988877643 553
No 48
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=36.44 E-value=31 Score=19.71 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCCHHHHHH
Q 033244 88 LYLIQLADVCGLDLGQAAL 106 (124)
Q Consensus 88 ~~l~~lA~~~giDle~al~ 106 (124)
..+..+|..+|+|+++.+.
T Consensus 42 ~~l~~i~~~~~v~~~~l~~ 60 (64)
T PF12844_consen 42 STLKKIAEALGVSLDELFD 60 (64)
T ss_dssp HHHHHHHHHHTS-HHHHCC
T ss_pred HHHHHHHHHhCCCHHHHhc
Confidence 4458999999999987653
No 49
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=35.78 E-value=67 Score=16.50 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 033244 89 YLIQLADVCGLDLGQAALAKIVKNARK 115 (124)
Q Consensus 89 ~l~~lA~~~giDle~al~~k~~k~~~R 115 (124)
.+-.+|...|.+..+.+...+..+..|
T Consensus 13 ~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 13 RLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 456788899999999988888876654
No 50
>PF11479 Suppressor_P21: RNA silencing suppressor P21; InterPro: IPR021575 P21 is produced by Beet yellows virus to suppress the antiviral silencing response mounted by the host. P21 acts by binding directly to siRNA which is a mediator in the process. P21 has an octameric ring structure with a large central cavity []. ; PDB: 2CWO_B.
Probab=35.41 E-value=23 Score=24.59 Aligned_cols=30 Identities=27% Similarity=0.232 Sum_probs=21.1
Q ss_pred HHHHH-HHHHHHHcCCCHHHHHHHHHHHHHh
Q 033244 85 DVLLY-LIQLADVCGLDLGQAALAKIVKNAR 114 (124)
Q Consensus 85 DvL~~-l~~lA~~~giDle~al~~k~~k~~~ 114 (124)
|.|-. +-..|+..|+.-++|+.+||.|.+.
T Consensus 104 ~tlnafleeycritgl~redalrekmrkv~s 134 (177)
T PF11479_consen 104 DTLNAFLEEYCRITGLTREDALREKMRKVRS 134 (177)
T ss_dssp HHHHHHHHHHHHHH---HHHHCCSBHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhH
Confidence 44433 4478999999999999999999875
No 51
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=35.33 E-value=65 Score=17.35 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=22.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 033244 90 LIQLADVCGLDLGQAALAKIVKNARKYPV 118 (124)
Q Consensus 90 l~~lA~~~giDle~al~~k~~k~~~R~~~ 118 (124)
++.-|...|+||..=+..-+.++.. ++.
T Consensus 2 lieTcK~ngv~P~~yL~~vL~~i~~-~~~ 29 (39)
T PF13817_consen 2 LIETCKLNGVNPYAYLTDVLERIPN-HPA 29 (39)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcc-CCH
Confidence 5678999999999999888888766 443
No 52
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=33.79 E-value=27 Score=19.95 Aligned_cols=18 Identities=11% Similarity=-0.077 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCCHHHHH
Q 033244 88 LYLIQLADVCGLDLGQAA 105 (124)
Q Consensus 88 ~~l~~lA~~~giDle~al 105 (124)
-.+..+|..+|+++++.+
T Consensus 41 ~~l~~ia~~l~~~~~el~ 58 (63)
T PF13443_consen 41 DTLEKIAKALNCSPEELF 58 (63)
T ss_dssp HHHHHHHHHHT--HHHCT
T ss_pred HHHHHHHHHcCCCHHHHh
Confidence 456788999999998754
No 53
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=33.63 E-value=91 Score=19.63 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=21.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHh--hcCCc
Q 033244 92 QLADVCGLDLGQAALAKIVKNAR--KYPVI 119 (124)
Q Consensus 92 ~lA~~~giDle~al~~k~~k~~~--R~~~~ 119 (124)
.++..+|+++.+|+...+....+ +.|.+
T Consensus 18 ~vl~~lGls~S~Ai~~fl~qi~~~~~iPF~ 47 (80)
T PRK11235 18 AVLEKLGVTPSEALRLLLQYVAENGRLPFK 47 (80)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 45688999999999998888764 35554
No 54
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=33.47 E-value=1.3e+02 Score=19.31 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 033244 76 KEHLEEELSDVLLYLIQLADVCGLDLGQAALAKIVKNAR 114 (124)
Q Consensus 76 ~~~l~eELgDvL~~l~~lA~~~giDle~al~~k~~k~~~ 114 (124)
.+++.+|..+| +..+|+++.+|+...+.+..+
T Consensus 12 D~~vK~eA~~V-------l~~mGlt~S~airm~L~~va~ 43 (88)
T COG3077 12 DDEVKEEATAV-------LEEMGLTISDAIRMFLTKVAR 43 (88)
T ss_pred cHHHHHHHHHH-------HHHhCCCHHHHHHHHHHHHHH
Confidence 35566665554 468899999999988888763
No 55
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=32.52 E-value=61 Score=19.07 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHH
Q 033244 84 SDVLLYLIQLADVCGLDLGQA 104 (124)
Q Consensus 84 gDvL~~l~~lA~~~giDle~a 104 (124)
.-+--|+-.+|+.+|+|+++.
T Consensus 42 ~y~rg~lr~Ya~~Lgld~~~l 62 (62)
T PF13413_consen 42 VYARGYLRKYARFLGLDPDEL 62 (62)
T ss_dssp HHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHHhCcCcccC
Confidence 446678999999999998763
No 56
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=31.96 E-value=54 Score=24.49 Aligned_cols=32 Identities=19% Similarity=0.049 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 033244 84 SDVLLYLIQLADVCGLDLGQAALAKIVKNARK 115 (124)
Q Consensus 84 gDvL~~l~~lA~~~giDle~al~~k~~k~~~R 115 (124)
.||+--|..||..|++++++.+.+-+.-..++
T Consensus 9 ~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~ 40 (253)
T PF08418_consen 9 PDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNM 40 (253)
T ss_dssp HHHHHHHHTHHHHST--HHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 47888899999999999999887765555444
No 57
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=30.28 E-value=1.3e+02 Score=21.70 Aligned_cols=31 Identities=19% Similarity=-0.014 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 033244 83 LSDVLLYLIQLADVCGLDLGQAALAKIVKNA 113 (124)
Q Consensus 83 LgDvL~~l~~lA~~~giDle~al~~k~~k~~ 113 (124)
-||+|...+..+...|.++++|+....+-..
T Consensus 206 aGD~f~a~l~a~l~~g~~~~~A~~~A~~~~~ 236 (242)
T cd01169 206 TGCTLSSAIAANLAKGLSLEEAVREAKEYVT 236 (242)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999999988776543
No 58
>PHA01623 hypothetical protein
Probab=30.01 E-value=1.2e+02 Score=17.60 Aligned_cols=27 Identities=26% Similarity=0.128 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 033244 89 YLIQLADVCGLDLGQAALAKIVKNARK 115 (124)
Q Consensus 89 ~l~~lA~~~giDle~al~~k~~k~~~R 115 (124)
.|-.+|...|++..+++...+..+...
T Consensus 27 ~Ld~y~~~~g~~rSe~IreAI~~yL~~ 53 (56)
T PHA01623 27 RLKVYCAKNNLQLTQAIEEAIKEYLQK 53 (56)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345678899999999999999988765
No 59
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=29.92 E-value=1.7e+02 Score=24.77 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHH------------hhhhhhcCCCCCCCc-chhhHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHH
Q 033244 46 ALVGEVGELSEIFQ------------WRGEVARGLPNWSSD-DKEHLEEELSDVLLYLIQLADVCGLDLG--QAALAKIV 110 (124)
Q Consensus 46 ~l~eE~gElae~v~------------~~~~~~~g~~~~~~~-~~~~l~eELgDvL~~l~~lA~~~giDle--~al~~k~~ 110 (124)
+|..|+.||.+.+. |..+.....+..+.+ ...-+.+|+|.|+..++.=|.-+.-|.+ .||.+.++
T Consensus 412 RLk~EL~~v~~~L~~~~~~~~~~H~~Wa~~l~~~~~~~~~env~~iv~~evG~vF~~VLedAGVFK~~~eG~~aF~rFi~ 491 (493)
T PRK05270 412 RLKEELEEVEKYLLGEANEVAAKHQEWAEQLKAKYGITTKENVEAIVQEEVGSVFARVLEDAGVFKRTEEGQAAFDRFIE 491 (493)
T ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhhccCccccCHhHHHHHHHHHh
Confidence 46678888887773 322211111111222 3455899999999999988888877765 45555443
No 60
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=29.57 E-value=1.4e+02 Score=18.40 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=16.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHh
Q 033244 91 IQLADVCGLDLGQAALAKIVKNAR 114 (124)
Q Consensus 91 ~~lA~~~giDle~al~~k~~k~~~ 114 (124)
-.++..+|+++.+|+...+.....
T Consensus 17 ~~il~~~Glt~s~ai~~fl~qiv~ 40 (83)
T PF04221_consen 17 EAILEELGLTLSDAINMFLKQIVR 40 (83)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456678888888888888877663
No 61
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=29.31 E-value=89 Score=18.24 Aligned_cols=23 Identities=9% Similarity=-0.047 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Q 033244 87 LLYLIQLADVCGLDLGQAALAKI 109 (124)
Q Consensus 87 L~~l~~lA~~~giDle~al~~k~ 109 (124)
.+-+-.+|+.+|+++++|+..--
T Consensus 5 v~~Ie~~A~~~~~s~~ea~~~~~ 27 (62)
T PF12668_consen 5 VFCIEEFAKKLNISGEEAYNYFK 27 (62)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHH
Confidence 34455889999999999987643
No 62
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=28.67 E-value=1.5e+02 Score=21.99 Aligned_cols=34 Identities=12% Similarity=-0.085 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 033244 80 EEELSDVLLYLIQLADVCGLDLGQAALAKIVKNA 113 (124)
Q Consensus 80 ~eELgDvL~~l~~lA~~~giDle~al~~k~~k~~ 113 (124)
-.=-||+|-.++.-+-..|.++++|+..+.+-..
T Consensus 196 ~~GTGd~fss~laa~l~~g~~l~~Av~~A~~~v~ 229 (246)
T PF08543_consen 196 FHGTGDLFSSALAAFLAKGYSLEEAVEKAKNFVR 229 (246)
T ss_dssp CTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3458999999999888999999999998876554
No 63
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=28.29 E-value=1.6e+02 Score=18.66 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 033244 78 HLEEELSDVLLYLIQLADVCGLDLGQAALAKIV 110 (124)
Q Consensus 78 ~l~eELgDvL~~l~~lA~~~giDle~al~~k~~ 110 (124)
.+-+++-|.|--|..||...||.+++...-++.
T Consensus 45 ~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~ 77 (82)
T PF11020_consen 45 QIPEKVMDSLSKLYKLAKENNVSFEELCVYALG 77 (82)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 355667788899999999999999987765554
No 64
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=27.36 E-value=1.1e+02 Score=21.54 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=22.3
Q ss_pred hhHHHHHH---HHHHHHHHHHHHcCCCHHHHHH
Q 033244 77 EHLEEELS---DVLLYLIQLADVCGLDLGQAAL 106 (124)
Q Consensus 77 ~~l~eELg---DvL~~l~~lA~~~giDle~al~ 106 (124)
..+.+++| |.=..++.+|..+|+|.++.+.
T Consensus 110 n~~q~~~~~~l~~e~aall~ake~Gvdv~~~~~ 142 (144)
T PF09999_consen 110 NELQEELGGLLDPEAAALLYAKEKGVDVSDFAD 142 (144)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHhCCCHHHHhh
Confidence 34667777 4455677889999999988765
No 65
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=27.19 E-value=1.6e+02 Score=18.36 Aligned_cols=9 Identities=0% Similarity=0.180 Sum_probs=4.1
Q ss_pred cchhhHHHH
Q 033244 74 DDKEHLEEE 82 (124)
Q Consensus 74 ~~~~~l~eE 82 (124)
.+.+.++.+
T Consensus 28 ~~Id~Ie~~ 36 (86)
T cd08779 28 RELQRIKYN 36 (86)
T ss_pred HHHHHHHHH
Confidence 344444444
No 66
>PHA01083 hypothetical protein
Probab=27.09 E-value=63 Score=22.89 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=12.9
Q ss_pred HHHHHHHcCCCHHHHHHHH
Q 033244 90 LIQLADVCGLDLGQAALAK 108 (124)
Q Consensus 90 l~~lA~~~giDle~al~~k 108 (124)
++.+|..+|+|+++++..-
T Consensus 49 A~~LAe~aGiDp~eall~i 67 (149)
T PHA01083 49 AIFLAESAGIDPEIALLGC 67 (149)
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 3567777788887766543
No 67
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=27.07 E-value=1.4e+02 Score=19.11 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 033244 81 EELSDVLLYLIQLADVCGLDLGQAALA 107 (124)
Q Consensus 81 eELgDvL~~l~~lA~~~giDle~al~~ 107 (124)
..+.+.+-.++.++-+.|+++++++..
T Consensus 37 ~~~~~ai~rliS~~Lr~G~~~~~ii~~ 63 (95)
T PF12637_consen 37 SGNLEAIARLISLALRSGVPPEEIIDQ 63 (95)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 567788889999999999999987654
No 68
>COG3612 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.88 E-value=1.3e+02 Score=21.43 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=24.4
Q ss_pred hhHHHHHH--HHHHHHHHHHHHcCCCHHHHHHHHH
Q 033244 77 EHLEEELS--DVLLYLIQLADVCGLDLGQAALAKI 109 (124)
Q Consensus 77 ~~l~eELg--DvL~~l~~lA~~~giDle~al~~k~ 109 (124)
..+.++|| +.-..++.+|+..|||+...+.+.-
T Consensus 116 n~~qe~l~lvtf~~aaLivake~Gidis~~i~ev~ 150 (157)
T COG3612 116 NSLQENLGLVTFQTAALIVAKEFGIDISGFIEEVE 150 (157)
T ss_pred HHHHHHhcceehHHHHHHHHHHhCCCchHHHHHHH
Confidence 34666776 4445688999999999998877653
No 69
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.50 E-value=2.6e+02 Score=20.95 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHH
Q 033244 36 QYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDV 86 (124)
Q Consensus 36 ~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDv 86 (124)
+..+...-+..+.+..+||-+++- ..++.+ +-+.+++..||+++
T Consensus 127 ~IedlQDem~Dlmd~a~EiQE~Lg----r~y~~p---eide~dL~aELdaL 170 (218)
T KOG1655|consen 127 KIEDLQDEMEDLMDQADEIQEVLG----RNYNTP---DIDEADLDAELDAL 170 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----hccCCC---CcCHHHHHHHHHHH
Confidence 333455578889999999988875 224433 23556777777655
No 70
>PF12864 DUF3822: Protein of unknown function (DUF3822); InterPro: IPR024213 This is a family of uncharacterised bacterial proteins. However, structural-similarity searches indicate the family takes on an actin-like ATPase fold.; PDB: 3HRG_A.
Probab=25.66 E-value=38 Score=25.42 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHcCCCHHH
Q 033244 83 LSDVLLYLIQLADVCGLDLGQ 103 (124)
Q Consensus 83 LgDvL~~l~~lA~~~giDle~ 103 (124)
-.|.+.|++-++.++|+|++.
T Consensus 206 ~eD~lYYlL~v~~Ql~ld~e~ 226 (253)
T PF12864_consen 206 AEDFLYYLLFVWEQLGLDPEK 226 (253)
T ss_dssp HHHHHHHHHHHHHHTT--TTT
T ss_pred hHHHHHHHHHHHHHcCCCccc
Confidence 689999999999999998863
No 71
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=25.37 E-value=1.4e+02 Score=16.95 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 033244 87 LLYLIQLADVCGLDLGQAALAKIVK 111 (124)
Q Consensus 87 L~~l~~lA~~~giDle~al~~k~~k 111 (124)
|-.++.+| ..|++|+ |+...+..
T Consensus 24 L~ici~L~-e~GVnPe-aLA~vI~e 46 (48)
T PF12554_consen 24 LSICIELC-ENGVNPE-ALAAVIKE 46 (48)
T ss_pred HHHHHHHH-HCCCCHH-HHHHHHHH
Confidence 44556666 5789998 66655544
No 72
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=24.91 E-value=33 Score=20.51 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=18.3
Q ss_pred chhccccCCcCCHHHHHHHHHHHH
Q 033244 6 YECVKKAYKDVSLQELRDRLAEFA 29 (124)
Q Consensus 6 ~~~~~~~~~~m~i~elq~~i~~~~ 29 (124)
|.|+.....+|+++|+-+.+.+..
T Consensus 8 ~~vL~~~~~pm~~~eI~~~i~~~~ 31 (72)
T PF05066_consen 8 YEVLEEAGRPMTFKEIWEEIQERG 31 (72)
T ss_dssp HHHHHHH-S-EEHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHhC
Confidence 677888889999999999988754
No 73
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=24.72 E-value=1.1e+02 Score=16.87 Aligned_cols=20 Identities=15% Similarity=-0.114 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHHhhcCC
Q 033244 99 LDLGQAALAKIVKNARKYPV 118 (124)
Q Consensus 99 iDle~al~~k~~k~~~R~~~ 118 (124)
-||++++.....|+...|+.
T Consensus 21 PDLdel~r~l~~kl~~~fgg 40 (42)
T PF12221_consen 21 PDLDELFRKLQDKLGGLFGG 40 (42)
T ss_pred CCHHHHHHHHHHHHhcccCC
Confidence 58889988888888777653
No 74
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=24.70 E-value=1.8e+02 Score=22.08 Aligned_cols=31 Identities=16% Similarity=0.027 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 033244 83 LSDVLLYLIQLADVCGLDLGQAALAKIVKNA 113 (124)
Q Consensus 83 LgDvL~~l~~lA~~~giDle~al~~k~~k~~ 113 (124)
-||++...+..+-..|.++++|+....+...
T Consensus 231 aGD~faa~~~a~l~~g~~l~~Av~~A~~~v~ 261 (281)
T PRK08176 231 TGDLFCAELVSGLLKGKALTDAAHRAGLRVL 261 (281)
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4999999999888899999999998876554
No 75
>PF09691 PulS_OutS: Bacterial chaperone lipoprotein (PulS_OutS); InterPro: IPR019114 This family comprises lipoproteins from gamma proteobacterial species: pullulanase secretion protein PulS protein of Klebsiella pneumoniae (P20440 from SWISSPROT), the lipoprotein OutS protein of Erwinia chrysanthemi (Q01567 from SWISSPROT) and the functionally uncharacterised type II secretion protein EtpO (Q7BSV3 from SWISSPROT) from Escherichia coli O157:H7. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In addition to the PulS/OutS proteins this entry also includes other functionally uncharacterised proteins, such as YacC from Escherischia coli (P0AA95 from SWISSPROT).; PDB: 3SOL_A 3UYM_A 3UTK_A 4A56_A.
Probab=24.47 E-value=1.9e+02 Score=19.24 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 033244 18 LQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEV 51 (124)
Q Consensus 18 i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~ 51 (124)
=.++.+.+-.++..++|+-.......+..+.++.
T Consensus 48 ~~~I~~~a~~~A~~~gWd~~~~~~~~l~~~se~~ 81 (109)
T PF09691_consen 48 EQEIIRAAVIFAQQRGWDTSNYNYQQLSQLSEES 81 (109)
T ss_dssp HHHHHHHHHHHHHHTT--CGG--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHH
Confidence 3568888888999999984332223444444443
No 76
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=24.24 E-value=1.4e+02 Score=19.18 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=21.0
Q ss_pred HHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHhh
Q 033244 83 LSDVLLY-LIQLADVCGLDLGQAALAKIVKNARK 115 (124)
Q Consensus 83 LgDvL~~-l~~lA~~~giDle~al~~k~~k~~~R 115 (124)
++|+.++ ++..+..+|+|+.-.+..-++++..|
T Consensus 72 ~ADi~l~~~~~~~~~~~~~~~P~l~~~~~rv~~r 105 (114)
T cd03194 72 IADAFFAPVVTRFRTYGLPLSPAAQAYVDALLAH 105 (114)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCC
Confidence 7888876 33455667888655566555555544
No 77
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=23.99 E-value=76 Score=20.41 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=16.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHH
Q 033244 91 IQLADVCGLDLGQAALAKIVK 111 (124)
Q Consensus 91 ~~lA~~~giDle~al~~k~~k 111 (124)
..+|..+|+|..++......+
T Consensus 26 ~~lce~~giD~~~V~~~~~~d 46 (96)
T PF00984_consen 26 ARLCEKLGIDVYEVIEAANTD 46 (96)
T ss_dssp HHHHHHHTSBHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHccC
Confidence 367999999999988776554
No 78
>PF13318 DUF4089: Protein of unknown function (DUF4089)
Probab=23.66 E-value=91 Score=17.75 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=16.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 033244 89 YLIQLADVCGLDLGQAALAKIVKNARK 115 (124)
Q Consensus 89 ~l~~lA~~~giDle~al~~k~~k~~~R 115 (124)
|+.+++..+|+++.+.....+..|-.|
T Consensus 1 Yv~~~a~llgL~l~~~~r~~V~~n~~r 27 (50)
T PF13318_consen 1 YVDQMAALLGLPLDEEWRPGVVANFER 27 (50)
T ss_pred CHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 455667777777776666555544443
No 79
>COG3784 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.58 E-value=1.8e+02 Score=19.34 Aligned_cols=31 Identities=19% Similarity=-0.025 Sum_probs=26.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCcc
Q 033244 90 LIQLADVCGLDLGQAALAKIVKNARKYPVIN 120 (124)
Q Consensus 90 l~~lA~~~giDle~al~~k~~k~~~R~~~~~ 120 (124)
--.+|...|++++++-...=.|+-.|-+.+.
T Consensus 67 Yq~lA~~n~~s~~~vak~agqklv~Ra~~Gq 97 (109)
T COG3784 67 YQQLAKKNGASTEEVAKLAGQKLVARAAPGQ 97 (109)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC
Confidence 3478899999999999999999999977664
No 80
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=23.20 E-value=2.1e+02 Score=20.97 Aligned_cols=30 Identities=13% Similarity=-0.212 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 033244 83 LSDVLLYLIQLADVCGLDLGQAALAKIVKN 112 (124)
Q Consensus 83 LgDvL~~l~~lA~~~giDle~al~~k~~k~ 112 (124)
-||++...+..+...|.|+++++....+-.
T Consensus 207 aGDaf~a~~~~~l~~g~~l~ea~~~A~~~~ 236 (253)
T PRK12413 207 AGCTFASSIASQLVKGKSPLEAVKNSKDFV 236 (253)
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 599999999888889999999998765543
No 81
>COG1476 Predicted transcriptional regulators [Transcription]
Probab=23.16 E-value=1.3e+02 Score=18.43 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHH
Q 033244 86 VLLYLIQLADVCGLDLGQAALA 107 (124)
Q Consensus 86 vL~~l~~lA~~~giDle~al~~ 107 (124)
-|...+.+|..++.+++++|..
T Consensus 42 sl~La~kia~~f~~~iedIF~~ 63 (68)
T COG1476 42 SLELALKIARVFGKTIEDIFQL 63 (68)
T ss_pred hHHHHHHHHHHhCCCHHHHHhh
Confidence 4667889999999999999875
No 82
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=22.93 E-value=91 Score=24.89 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHH
Q 033244 77 EHLEEELSDVLLYLIQLADVCGLDLG 102 (124)
Q Consensus 77 ~~l~eELgDvL~~l~~lA~~~giDle 102 (124)
.--.+||+|+.......|+.+|++|.
T Consensus 172 ~PtaeeladIa~~sa~~a~~fgi~Pk 197 (327)
T COG0280 172 DPTAEELADIAENAAETARRFGIEPK 197 (327)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 34679999999999999999999875
No 83
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=22.47 E-value=1.7e+02 Score=21.35 Aligned_cols=27 Identities=11% Similarity=-0.037 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 033244 84 SDVLLYLIQLADVCGLDLGQAALAKIV 110 (124)
Q Consensus 84 gDvL~~l~~lA~~~giDle~al~~k~~ 110 (124)
||.+..-+..+...|.++++|+.....
T Consensus 227 GDaF~ag~l~~l~~g~~~~~al~~a~~ 253 (265)
T cd01947 227 GDSFAAGFIYGLLKGWSIEEALELGAQ 253 (265)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 899999999999999999999987754
No 84
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=22.41 E-value=1.2e+02 Score=23.00 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 033244 80 EEELSDVLLYLIQLADVCGLDLGQAALAKIV 110 (124)
Q Consensus 80 ~eELgDvL~~l~~lA~~~giDle~al~~k~~ 110 (124)
..|||++|+.+...-+.....++..+.....
T Consensus 65 SkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~ 95 (232)
T cd07646 65 SKELGDVLFQMAEVHRQIQNQLEEMLKSFHN 95 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999888887777777766655443
No 85
>PHA01748 hypothetical protein
Probab=22.35 E-value=1.8e+02 Score=17.02 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 033244 88 LYLIQLADVCGLDLGQAALAKIVKNARK 115 (124)
Q Consensus 88 ~~l~~lA~~~giDle~al~~k~~k~~~R 115 (124)
-.+-.+|...|++-.+++...+..+...
T Consensus 15 ~eld~~a~~~g~~RSE~Ir~Ai~~~~~~ 42 (60)
T PHA01748 15 ELLDRYAIKHGLNRSEAIRKAIEKMVKD 42 (60)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3455678888999999998888877654
No 86
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=22.30 E-value=1e+02 Score=14.36 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 033244 86 VLLYLIQLADVCGLDLGQAALAKIVKNARKYPV 118 (124)
Q Consensus 86 vL~~l~~lA~~~giDle~al~~k~~k~~~R~~~ 118 (124)
+++.+..+....| +.++| ...+.++..+||.
T Consensus 2 a~~~~a~~~~~~g-~~~~A-~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLG-DYDEA-IEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHC-HHHHH-HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcc-CHHHH-HHHHHHHHHHCcC
Confidence 3344433333333 33333 4467777888874
No 87
>PHA01976 helix-turn-helix protein
Probab=22.26 E-value=96 Score=17.74 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=13.0
Q ss_pred HHHHHHHHcCCCHHHHH
Q 033244 89 YLIQLADVCGLDLGQAA 105 (124)
Q Consensus 89 ~l~~lA~~~giDle~al 105 (124)
.+..+|+.+|++++..+
T Consensus 46 ~l~~ia~~l~v~~~~l~ 62 (67)
T PHA01976 46 TLLRLADALGVTLDWLC 62 (67)
T ss_pred HHHHHHHHHCcCHHHHh
Confidence 45678888999988654
No 88
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=21.65 E-value=2.3e+02 Score=20.69 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 033244 83 LSDVLLYLIQLADVCGLDLGQAALAKIVKNA 113 (124)
Q Consensus 83 LgDvL~~l~~lA~~~giDle~al~~k~~k~~ 113 (124)
-||.+...+..+...|.++++++....+-..
T Consensus 216 aGD~f~a~~~~~l~~g~~~~~a~~~A~~~~~ 246 (254)
T cd01173 216 TGDLFAALLLARLLKGKSLAEALEKALNFVH 246 (254)
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4999999999999999999999998876543
No 89
>PRK07105 pyridoxamine kinase; Validated
Probab=21.29 E-value=2.3e+02 Score=21.32 Aligned_cols=30 Identities=17% Similarity=-0.010 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 033244 83 LSDVLLYLIQLADVCGLDLGQAALAKIVKN 112 (124)
Q Consensus 83 LgDvL~~l~~lA~~~giDle~al~~k~~k~ 112 (124)
-||++...+..+...|.++++++....+-.
T Consensus 220 aGD~f~aa~~~~l~~g~~l~~av~~A~~~~ 249 (284)
T PRK07105 220 TGDIFTSVITGSLLQGDSLPIALDRAVQFI 249 (284)
T ss_pred hhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 599999999999999999999998876644
No 90
>PRK05756 pyridoxamine kinase; Validated
Probab=21.25 E-value=2.3e+02 Score=21.32 Aligned_cols=31 Identities=16% Similarity=0.004 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 033244 83 LSDVLLYLIQLADVCGLDLGQAALAKIVKNA 113 (124)
Q Consensus 83 LgDvL~~l~~lA~~~giDle~al~~k~~k~~ 113 (124)
-||++...+..+-..|.++++|+....+...
T Consensus 220 aGD~f~a~~~a~l~~g~~~~~al~~A~~~~~ 250 (286)
T PRK05756 220 VGDLTSALFLARLLQGGSLEEALEHTTAAVY 250 (286)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4999999999998899999999988766544
No 91
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=21.16 E-value=2.4e+02 Score=20.81 Aligned_cols=30 Identities=17% Similarity=-0.125 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 033244 83 LSDVLLYLIQLADVCGLDLGQAALAKIVKN 112 (124)
Q Consensus 83 LgDvL~~l~~lA~~~giDle~al~~k~~k~ 112 (124)
-||+|...+.-+...|.++.+|+....+-.
T Consensus 213 aGD~f~a~l~~~l~~g~~l~~A~~~A~~~~ 242 (266)
T PRK06427 213 TGCTLSAAIAAELAKGASLLDAVQTAKDYV 242 (266)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 499999999998889999999998876443
No 92
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=21.12 E-value=1.7e+02 Score=22.69 Aligned_cols=29 Identities=24% Similarity=0.087 Sum_probs=24.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 033244 90 LIQLADVCGLDLGQAALAKIVKNARKYPV 118 (124)
Q Consensus 90 l~~lA~~~giDle~al~~k~~k~~~R~~~ 118 (124)
|-..|..+|.|+++|+.+-.-++..-|.+
T Consensus 107 le~aaekl~~~~ee~~~~vg~~L~e~fG~ 135 (269)
T COG1093 107 LELAAEKLGKDLEEAYEEVGWKLEEEFGS 135 (269)
T ss_pred HHHHHHHhCCCHHHHHHHHhHHHHHHhCC
Confidence 44568899999999999999888887764
No 93
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.95 E-value=3.8e+02 Score=20.37 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=12.7
Q ss_pred CcCCHHHHHHHHHHHHHh
Q 033244 14 KDVSLQELRDRLAEFAEV 31 (124)
Q Consensus 14 ~~m~i~elq~~i~~~~~~ 31 (124)
++..+.+++.++..+...
T Consensus 52 ~~~eF~Emkey~d~L~~~ 69 (243)
T cd07666 52 RPEEFTEMNEYVEAFSQK 69 (243)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 344588888888888654
No 94
>PRK12616 pyridoxal kinase; Reviewed
Probab=20.94 E-value=2.4e+02 Score=21.16 Aligned_cols=32 Identities=9% Similarity=-0.095 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 033244 82 ELSDVLLYLIQLADVCGLDLGQAALAKIVKNA 113 (124)
Q Consensus 82 ELgDvL~~l~~lA~~~giDle~al~~k~~k~~ 113 (124)
=-||+|...+..+...|.|+++|+....+-..
T Consensus 213 GaGD~fsaalaa~l~~g~~l~~Av~~A~~~~~ 244 (270)
T PRK12616 213 GAGCTFSAAVTAELAKGSEVKEAIYAAKEFIT 244 (270)
T ss_pred cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 35999999999999999999999988766544
No 95
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=20.90 E-value=2.9e+02 Score=19.02 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 033244 77 EHLEEELSDVLLYLIQLADVCGLDLGQAALA 107 (124)
Q Consensus 77 ~~l~eELgDvL~~l~~lA~~~giDle~al~~ 107 (124)
..-..|..+++--+..++..+|||+++.+..
T Consensus 48 ~~~~~er~~~l~~i~~~~~~~Git~eeL~~~ 78 (134)
T PRK10328 48 QRELAERQEKINTWLELMKADGINPEELLGN 78 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhhh
Confidence 3455667788888999999999999999764
No 96
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=20.70 E-value=1.3e+02 Score=25.20 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Q 033244 79 LEEELSDVLLYLIQLADVCGL-DLGQAALAKIVKNA 113 (124)
Q Consensus 79 l~eELgDvL~~l~~lA~~~gi-Dle~al~~k~~k~~ 113 (124)
+..+=-|+|+-.+.||+++|+ +|+.++.+.+..+-
T Consensus 110 l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL 145 (620)
T KOG4350|consen 110 LAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEIL 145 (620)
T ss_pred cccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 344445889999999999994 99999888766543
No 97
>PRK12412 pyridoxal kinase; Reviewed
Probab=20.60 E-value=2.5e+02 Score=21.00 Aligned_cols=32 Identities=9% Similarity=-0.173 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 033244 82 ELSDVLLYLIQLADVCGLDLGQAALAKIVKNA 113 (124)
Q Consensus 82 ELgDvL~~l~~lA~~~giDle~al~~k~~k~~ 113 (124)
=-||++...+..+...|.++++|+....+-..
T Consensus 210 GaGD~f~aa~aa~l~~g~~l~eA~~~A~~~~~ 241 (268)
T PRK12412 210 GAGCTYSAAITAELAKGKPVKEAVKTAKEFIT 241 (268)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 35999999999998999999999988765443
No 98
>KOG1593 consensus Asparaginase [Amino acid transport and metabolism]
Probab=20.38 E-value=2e+02 Score=22.70 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=29.2
Q ss_pred HHHHHHHHH-----HHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 033244 83 LSDVLLYLI-----QLADVCGLDLGQAALAKIVKNARKYPV 118 (124)
Q Consensus 83 LgDvL~~l~-----~lA~~~giDle~al~~k~~k~~~R~~~ 118 (124)
=||+++..+ .-.-+.|-+|++|....+.++.+.||.
T Consensus 262 dGDvmMRFLPs~~aVe~Mr~G~~P~eAa~~~i~RI~khfp~ 302 (349)
T KOG1593|consen 262 DGDVMMRFLPSYQAVEQMRAGKKPAEAAQKAISRILKHFPD 302 (349)
T ss_pred CchhHHHhhhHHHHHHHHHcCCChHHHHHHHHHHHHHhCcc
Confidence 368887643 445578999999999999999998875
No 99
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=20.35 E-value=1.9e+02 Score=21.70 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 033244 83 LSDVLLYLIQLADVCGLDLGQAALAKIVK 111 (124)
Q Consensus 83 LgDvL~~l~~lA~~~giDle~al~~k~~k 111 (124)
-||++...+..+...|.++++++....+-
T Consensus 221 aGD~f~A~~l~~l~~g~~~~~al~~A~~~ 249 (286)
T TIGR00687 221 TGDLIAALLLATLLHGNSLKEALEKTVSA 249 (286)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 48999999999999999999999887766
No 100
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.28 E-value=1.4e+02 Score=15.17 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCCHHHH
Q 033244 89 YLIQLADVCGLDLGQA 104 (124)
Q Consensus 89 ~l~~lA~~~giDle~a 104 (124)
.|+.-|...|++.++.
T Consensus 7 ~Li~eA~~~Gls~eei 22 (30)
T PF08671_consen 7 ELIKEAKESGLSKEEI 22 (30)
T ss_dssp HHHHHHHHTT--HHHH
T ss_pred HHHHHHHHcCCCHHHH
Confidence 4778888999998875
No 101
>PF09055 Sod_Ni: Nickel-containing superoxide dismutase; InterPro: IPR014123 This entry represents nickel-dependent superoxide dismutase (NiSOD) (1.15.1.1 from EC), a SOD enzyme that uses nickel, rather than iron, manganese, copper, or zinc. All SOD enzymes catalyse the dismutation of toxic superoxide radical anions to oxygen and hydrogen peroxide in order to protect cells from oxidative damage. The catalytic cycle of NiSOD consists of two half-reactions, each initiated by the successive approach of substrate to the metal centre. The first (reductive) phase involves Ni(III) reduction to Ni(II), and the second (oxidative) phase involves the metal reoxidation back to its resting state []. NiSOD has a novel SOD fold and assembly, consisting of a hexameric assembly of 4-helix bundles of up-and-down topology, which contains a 9-residue nickel-hook structural motif that is critical for metal binding and catalysis []. A gene for a required protease (NiSOD maturation protease; IPR014124 from INTERPRO) is adjacent to the NiSOD gene. ; GO: 0004784 superoxide dismutase activity, 0016151 nickel ion binding, 0016209 antioxidant activity; PDB: 1T6U_K 1T6I_C 1T6Q_C 3G50_A 3G4Z_C 3G4X_A 1Q0D_G 1Q0F_K 1Q0G_H 1Q0K_L ....
Probab=20.24 E-value=1.9e+02 Score=19.91 Aligned_cols=11 Identities=9% Similarity=-0.151 Sum_probs=5.8
Q ss_pred cccchhccccC
Q 033244 3 KSSYECVKKAY 13 (124)
Q Consensus 3 ~~~~~~~~~~~ 13 (124)
|+.||.++++.
T Consensus 72 wtdYFk~~~~e 82 (128)
T PF09055_consen 72 WTDYFKPQHFE 82 (128)
T ss_dssp HHCTS-HHHHH
T ss_pred HHhhccCchHH
Confidence 45566666555
Done!