Query 033244
Match_columns 124
No_of_seqs 109 out of 1077
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 19:11:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3obc_A Pyrophosphatase; dimeri 100.0 3.1E-30 1.1E-34 174.1 9.0 104 17-122 12-116 (118)
2 2a3q_A Hypothetical protein; M 100.0 1.3E-29 4.3E-34 181.2 9.6 116 9-124 22-137 (170)
3 2oie_A RS21-C6; helix, hydrola 99.9 2.8E-27 9.7E-32 158.1 8.8 105 9-113 7-111 (111)
4 2gta_A Hypothetical protein YP 99.9 4.7E-26 1.6E-30 154.2 11.6 105 15-123 3-107 (119)
5 2q73_A MAZG, hypothetical prot 99.9 9.4E-25 3.2E-29 143.6 10.6 95 16-119 1-95 (100)
6 2q5z_A MAZG, hypothetical prot 99.9 9E-25 3.1E-29 146.9 10.2 100 10-118 15-114 (114)
7 2yxh_A MAZG-related protein; T 99.8 1.4E-19 4.7E-24 121.9 11.2 91 18-121 2-96 (116)
8 1vmg_A Hypothetical protein SS 99.8 2.7E-19 9.4E-24 116.6 7.6 83 13-110 12-94 (95)
9 3cra_A Protein MAZG; tandem-re 99.7 2.9E-16 9.9E-21 118.5 9.1 96 8-119 137-232 (265)
10 3cra_A Protein MAZG; tandem-re 99.6 1.1E-14 3.7E-19 109.9 11.5 92 17-121 5-103 (265)
11 2yay_A Dutpase; hydrolase, lei 98.7 4.7E-09 1.6E-13 79.3 3.2 81 17-102 19-99 (271)
12 2yf4_A MAZG-like nucleoside tr 98.3 1.4E-05 4.8E-10 55.7 12.1 97 20-116 15-119 (154)
13 1y6x_A Phosphoribosyl-ATP pyro 98.3 1.7E-05 5.8E-10 50.9 10.1 80 14-106 5-91 (93)
14 1yxb_A PRA-PH, phosphoribosyl- 98.2 1.3E-05 4.6E-10 51.8 8.4 78 17-107 5-89 (98)
15 1yvw_A PRA-PH, phosphoribosyl- 98.1 3.2E-05 1.1E-09 51.4 9.9 82 17-111 4-91 (115)
16 2a7w_A PRA-PH, phosphoribosyl- 98.1 2.9E-05 9.9E-10 51.7 9.6 79 17-108 5-89 (116)
17 2rfp_A Putative NTP pyrophosph 98.1 4.8E-05 1.6E-09 53.7 10.3 97 23-120 9-136 (171)
18 1w2y_A Deoxyuridine 5'-triphos 97.2 0.0018 6.1E-08 47.6 7.9 75 17-96 9-88 (229)
19 3nl9_A Putative NTP pyrophosph 97.1 0.0013 4.4E-08 46.4 6.5 41 75-115 90-130 (171)
20 2p06_A Hypothetical protein AF 96.4 0.0073 2.5E-07 38.0 5.1 51 32-96 51-101 (114)
21 1ogl_A Dutpase, deoxyuridine t 93.2 0.14 4.7E-06 38.7 5.0 80 18-102 18-97 (283)
22 2cwo_A P21, RNA silencing supp 69.1 5.4 0.00019 27.1 3.7 30 85-114 124-154 (197)
23 2yay_A Dutpase; hydrolase, lei 68.6 8.3 0.00028 28.8 4.9 42 83-124 157-198 (271)
24 2k9i_A Plasmid PRN1, complete 64.5 14 0.00049 19.7 4.9 32 87-118 21-52 (55)
25 1ogl_A Dutpase, deoxyuridine t 55.6 11 0.00039 28.2 3.7 38 87-124 176-213 (283)
26 3v86_A De novo design helix; c 54.0 16 0.00056 17.1 3.7 14 46-59 4-17 (27)
27 2adl_A CCDA; ribbon-helix-heli 49.7 18 0.00062 21.3 3.2 29 90-118 13-41 (72)
28 2keb_A DNA polymerase subunit 49.5 47 0.0016 21.0 5.9 27 85-111 45-71 (101)
29 3e11_A Predicted zincin-like m 48.3 25 0.00086 22.6 4.0 28 75-104 82-109 (114)
30 3s8q_A R-M controller protein; 43.3 42 0.0014 19.0 4.2 25 88-112 54-78 (82)
31 3g5g_A Regulatory protein; tra 39.2 49 0.0017 20.0 4.2 25 89-113 72-96 (99)
32 2wus_R RODZ, putative uncharac 36.2 78 0.0027 19.7 5.1 26 86-111 54-79 (112)
33 2cpg_A REPA protein, transcrip 34.5 48 0.0016 16.7 4.7 31 86-116 13-43 (45)
34 1us7_B HSP90 CO-chaperone CDC3 33.4 26 0.0009 26.0 2.6 31 83-113 99-129 (265)
35 3f6w_A XRE-family like protein 32.7 46 0.0016 18.8 3.2 21 89-109 58-78 (83)
36 3qq6_A HTH-type transcriptiona 30.8 48 0.0016 18.8 3.1 18 89-106 55-72 (78)
37 2b5a_A C.BCLI; helix-turn-heli 30.2 60 0.002 17.8 3.4 20 89-108 54-73 (77)
38 2r1j_L Repressor protein C2; p 30.1 46 0.0016 17.7 2.8 17 90-106 50-66 (68)
39 2ofy_A Putative XRE-family tra 28.9 53 0.0018 18.7 3.0 18 89-106 59-76 (86)
40 3ok8_A Brain-specific angiogen 28.1 1.3E+02 0.0045 21.6 5.5 49 52-109 51-99 (222)
41 2k9q_A Uncharacterized protein 28.0 63 0.0021 18.0 3.2 19 89-107 46-64 (77)
42 4fxe_A Antitoxin RELB; toxin/a 26.4 78 0.0027 18.8 3.5 22 92-113 18-39 (79)
43 1r69_A Repressor protein CI; g 26.4 56 0.0019 17.4 2.7 18 90-107 45-62 (69)
44 1zug_A Phage 434 CRO protein; 25.2 58 0.002 17.5 2.6 17 90-106 47-63 (71)
45 3b7h_A Prophage LP1 protein 11 25.1 50 0.0017 18.2 2.4 18 89-106 52-69 (78)
46 1adr_A P22 C2 repressor; trans 25.0 64 0.0022 17.6 2.8 18 90-107 50-67 (76)
47 1xmk_A Double-stranded RNA-spe 22.9 1.3E+02 0.0043 17.8 5.2 26 90-115 28-53 (79)
48 2xi8_A Putative transcription 22.0 46 0.0016 17.6 1.7 17 89-105 45-61 (66)
49 3f52_A CLP gene regulator (CLG 21.7 1.3E+02 0.0045 18.1 4.1 24 88-111 71-94 (117)
50 1yz7_A Probable translation in 21.6 96 0.0033 21.6 3.6 27 92-118 22-48 (188)
51 3fym_A Putative uncharacterize 21.6 79 0.0027 20.1 3.0 20 88-107 52-71 (130)
52 1t6u_A Superoxide dismutase [N 21.4 92 0.0032 20.2 3.2 27 3-29 59-85 (117)
53 3ic3_A Putative pyruvate dehyd 20.9 1.7E+02 0.0057 18.5 5.3 42 75-116 45-87 (101)
54 3qnk_A Putative lipoprotein; a 20.4 1.4E+02 0.0046 23.6 4.7 33 82-116 390-422 (517)
No 1
>3obc_A Pyrophosphatase; dimeric four alpha-helical bundle, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PGE; 1.80A {Archaeoglobus fulgidus} SCOP: a.204.1.0
Probab=99.96 E-value=3.1e-30 Score=174.07 Aligned_cols=104 Identities=42% Similarity=0.672 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-hhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 033244 17 SLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQW-RGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLAD 95 (124)
Q Consensus 17 ~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~-~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~ 95 (124)
.+.++++++.+|+++|+|+++++|.+++++|++|+|||+++|+| .+..... ...+..+++|.+|||||||||++||+
T Consensus 12 ~~~~~~~~~~~F~~eR~W~qfh~Pknlal~L~~EaGELae~fqwg~~~~~~~--~~~~~~~~~l~eELADVL~Yl~~LA~ 89 (118)
T 3obc_A 12 HMEELLDILREFRDSRGWLKYHTPKNLAVSISIEVAELLEIFQWTRSSDEEF--EVLERRKGEVEEEIADVLIYLLFLCD 89 (118)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHHHHTTTCCSHHHHH--HHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHHHHhhccccccc--ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999998 5321100 00124578999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHhhcCCcccc
Q 033244 96 VCGLDLGQAALAKIVKNARKYPVINQK 122 (124)
Q Consensus 96 ~~giDle~al~~k~~k~~~R~~~~~~~ 122 (124)
.+||||++++..|++||.+|||.++++
T Consensus 90 ~lgIDLeea~~~Km~Kn~~RYP~~~~~ 116 (118)
T 3obc_A 90 VAEINPIEAVKRKMEKNERKYPKNRVH 116 (118)
T ss_dssp HHTCCHHHHHHHHHHHHHHHSCC----
T ss_pred HHCcCHHHHHHHHHHHHHHhCCchhcc
Confidence 999999999999999999999999875
No 2
>2a3q_A Hypothetical protein; MM.29898, BC004623, 2410015N17RIK, structural genomics, PROT structure initiative, PSI; 2.32A {Mus musculus} SCOP: a.204.1.2 PDB: 2q4p_A
Probab=99.96 E-value=1.3e-29 Score=181.17 Aligned_cols=116 Identities=47% Similarity=0.835 Sum_probs=98.5
Q ss_pred ccccCCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHH
Q 033244 9 VKKAYKDVSLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLL 88 (124)
Q Consensus 9 ~~~~~~~m~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~ 88 (124)
+..+|+.|++.++|+++.+|+..++|+++++|.+.+++|.+|+|||+++|+|......|....++.++++|.+|||||||
T Consensus 22 p~~lpalm~~~eLqk~~~~~~~~~dW~~~~~p~~l~~~L~EEvgEL~eai~~~~~~~~g~~~~~~~~~e~l~eELGDVL~ 101 (170)
T 2a3q_A 22 PFRFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLI 101 (170)
T ss_dssp CCCCCSCSCHHHHHHHHHHHHHTSCHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSSSCCGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHH
Confidence 45678899999999999999999999988899999999999999999999875322222111123567899999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccccCC
Q 033244 89 YLIQLADVCGLDLGQAALAKIVKNARKYPVINQKSS 124 (124)
Q Consensus 89 ~l~~lA~~~giDle~al~~k~~k~~~R~~~~~~~~~ 124 (124)
||+.||+.+|||+++|+..+++||++|||+++++||
T Consensus 102 ~lv~LA~~lgIDleeAl~~k~~K~~~Ryp~~~~~g~ 137 (170)
T 2a3q_A 102 YLVALAARCHVDLPQAVISKMDTNRQRYPVHLSRGS 137 (170)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHSCCCCC---
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcccHhhccc
Confidence 999999999999999999999999999999999885
No 3
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=99.94 E-value=2.8e-27 Score=158.12 Aligned_cols=105 Identities=48% Similarity=0.848 Sum_probs=86.2
Q ss_pred ccccCCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHH
Q 033244 9 VKKAYKDVSLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLL 88 (124)
Q Consensus 9 ~~~~~~~m~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~ 88 (124)
++.+|+.|++.++|+++.+|+..++|+++++|.+.+++|.+|+|||+++|+|......|....++.+++++.+|||||||
T Consensus 7 ~~~~p~~m~~~~lq~~~~~~~~~~dw~~~~~~~~~~~~L~eE~gEl~e~~~~~~~~~~~~~~~~~~~~~~l~eElgDvL~ 86 (111)
T 2oie_A 7 PFRFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLI 86 (111)
T ss_dssp CCCCCSCSCHHHHHHHHHHHHHTTTCGGGCCHHHHHHHHHHHHHHHHHHHHTCCCCSSCGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccHHHHHHHHHHHHHHCCCcccCCHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999875321111111123467899999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH
Q 033244 89 YLIQLADVCGLDLGQAALAKIVKNA 113 (124)
Q Consensus 89 ~l~~lA~~~giDle~al~~k~~k~~ 113 (124)
||+.+|+.+|||+++|+.++++||.
T Consensus 87 ~l~~lA~~lgiDle~al~~k~~Kn~ 111 (111)
T 2oie_A 87 YLVALAARCHVDLPQAVISKMDTNR 111 (111)
T ss_dssp HHHHHHHHTTCCHHHHHHTTC----
T ss_pred HHHHHHHHHCcCHHHHHHHHHHhhC
Confidence 9999999999999999999999984
No 4
>2gta_A Hypothetical protein YPJD; pyrophosphatase, NESG, structural genomics, PSI, protein structure initiative; 2.90A {Bacillus subtilis} SCOP: a.204.1.2
Probab=99.94 E-value=4.7e-26 Score=154.16 Aligned_cols=105 Identities=21% Similarity=0.283 Sum_probs=82.5
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 033244 15 DVSLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLA 94 (124)
Q Consensus 15 ~m~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA 94 (124)
+|+++++|+++.+|...++|+++ +|...+.+|.+|+|||+++++|.... .+. ...+.++.+.+||||||||++.+|
T Consensus 3 ~m~l~elq~~v~~~~~~r~w~~~-~~~~~~~kL~EE~gEl~eai~~~~~~-~~~--~~~~~~~~l~eELGDvLf~lv~lA 78 (119)
T 2gta_A 3 DKTMKDIQAEVDRYIGQFKEGYF-SPLAMMARLTEELGELAREVNHRYGE-KPK--KATEDDKSMEEEIGDVLFVLVCLA 78 (119)
T ss_dssp CCBHHHHHHHHHHHHTTSSSCSC-CHHHHHHHHHHHHHHHHHHHHHHTSS-SCC--CSSCSCSHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCCccC-CHHHHHHHHHHHHHHHHHHHHHhccc-ccc--cccchHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999987 48899999999999999999874111 110 011234789999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHhhcCCccccC
Q 033244 95 DVCGLDLGQAALAKIVKNARKYPVINQKS 123 (124)
Q Consensus 95 ~~~giDle~al~~k~~k~~~R~~~~~~~~ 123 (124)
+.+||||++|+..+++||.+|||++..++
T Consensus 79 ~~l~idle~al~~~~~K~~~R~p~~~~~~ 107 (119)
T 2gta_A 79 NSLDISLEEAHDRVMHKFNTRDKDRWTRK 107 (119)
T ss_dssp HTTTCCHHHHHHHHHHHSCC---------
T ss_pred HHHCcCHHHHHHHHHHHHHHhCCcccccc
Confidence 99999999999999999999999988765
No 5
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=99.92 E-value=9.4e-25 Score=143.64 Aligned_cols=95 Identities=32% Similarity=0.419 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 033244 16 VSLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLAD 95 (124)
Q Consensus 16 m~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~ 95 (124)
|+++++|+++.+|+ |++. +|...+++|.+|+|||+++++|.... . ...+..++.+.+||||||||++++|+
T Consensus 1 M~l~elQ~~v~~~~----~~~~-~~~~~~~kL~eE~gEl~e~~~~~~~~-~---~~~~~~~~~i~eELgDvL~~l~~lA~ 71 (100)
T 2q73_A 1 MKLSELQSHIKEFD----YAPE-QSEHYFFKLIEEVGELSESIRKGKSG-Q---PTLDELKGSVAEELYDVLYYVCALAN 71 (100)
T ss_dssp CCHHHHHHHHHHHC----CCGG-GHHHHHHHHHHHHHHHHHHHHTTCCS-C---CCGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh----hccC-ChHHHHHHHHHHHHHHHHHHHhhccc-c---cccchhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999986 7665 78889999999999999999864210 1 11234568899999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHhhcCCc
Q 033244 96 VCGLDLGQAALAKIVKNARKYPVI 119 (124)
Q Consensus 96 ~~giDle~al~~k~~k~~~R~~~~ 119 (124)
.+||||++|+..|++||..|||.-
T Consensus 72 ~lgiDle~al~~k~~~n~~kyp~~ 95 (100)
T 2q73_A 72 IHGVNLEKTHELKEVLNKVKYNRH 95 (100)
T ss_dssp HTTCCHHHHHHHHHHHHTC-----
T ss_pred HHCcCHHHHHHHHHHHhcccCCCc
Confidence 999999999999999999999964
No 6
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=99.92 E-value=9e-25 Score=146.88 Aligned_cols=100 Identities=30% Similarity=0.350 Sum_probs=78.4
Q ss_pred cccCCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHH
Q 033244 10 KKAYKDVSLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLY 89 (124)
Q Consensus 10 ~~~~~~m~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~ 89 (124)
..++..|+++++|+++.+|+...+| +.+.+++|.+|+|||+++++|.... + ...+.+++++.+||||||||
T Consensus 15 ~~~~~~m~l~elq~~i~~~~~~~~~-----~~~~~~kL~eE~gEl~e~i~~~~~~--~--~~~~~~~~~l~eELgDvL~~ 85 (114)
T 2q5z_A 15 VPRGSHMKLSELQSHIKEFDYAPEQ-----SEHYFFKLIEEVGELSESIRKGKSG--Q--PTLDELKGSVAEELYDVLYY 85 (114)
T ss_dssp -----CCBHHHHHHHHHHHSCCGGG-----HHHHHHHHHHHHHHHHHHHHTTCCS--C--CCGGGCTTCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHHHHHhhccc--c--ccccchHHHHHHHHHHHHHH
Confidence 4566779999999999999754433 4578999999999999999864211 1 00134578899999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 033244 90 LIQLADVCGLDLGQAALAKIVKNARKYPV 118 (124)
Q Consensus 90 l~~lA~~~giDle~al~~k~~k~~~R~~~ 118 (124)
++++|+.+||||++|+..+++||.+|||+
T Consensus 86 l~~LA~~lgiDle~al~~k~~K~~~RyP~ 114 (114)
T 2q5z_A 86 VCALANIHGVNLEKTRELKEVLNKVKYNR 114 (114)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999996
No 7
>2yxh_A MAZG-related protein; TM0360, LEFT-handed superhelix fold, structural genomics; 2.00A {Thermotoga maritima}
Probab=99.82 E-value=1.4e-19 Score=121.90 Aligned_cols=91 Identities=26% Similarity=0.375 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHc
Q 033244 18 LQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADVC 97 (124)
Q Consensus 18 i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~~ 97 (124)
+.++.+.+.+--..++|++.+++...+.++.+|++||.+++. .++.+++.+||||||++++.+|+.+
T Consensus 2 ~~~l~~i~lR~~~G~~W~~~qt~~~l~~~l~EE~~El~eai~-------------~~d~~~l~eElGDlLf~vv~la~~~ 68 (116)
T 2yxh_A 2 VERLLEIIERSLRKCPWLEKQSIETLLEALASEIEEVAEAVK-------------KNDLANLEEEIGDMIYDALLVAAVA 68 (116)
T ss_dssp HHHHHHHHHHHHHHCHHHHTCCHHHHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555552222358899989999999999999999999997 3468899999999999999999998
Q ss_pred ----CCCHHHHHHHHHHHHHhhcCCccc
Q 033244 98 ----GLDLGQAALAKIVKNARKYPVINQ 121 (124)
Q Consensus 98 ----giDle~al~~k~~k~~~R~~~~~~ 121 (124)
|||+++|+..+++|+.+|||+.+.
T Consensus 69 ~~~~~~d~e~al~~~~~K~~rR~~~v~~ 96 (116)
T 2yxh_A 69 QRDYGIDLESAIQKVVEKISHRKPWLFW 96 (116)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHCGGGGC
T ss_pred hHcCCCCHHHHHHHHHHHHHHHhHHHhC
Confidence 999999999999999999998764
No 8
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=99.79 E-value=2.7e-19 Score=116.55 Aligned_cols=83 Identities=28% Similarity=0.401 Sum_probs=72.5
Q ss_pred CCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHH
Q 033244 13 YKDVSLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQ 92 (124)
Q Consensus 13 ~~~m~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~ 92 (124)
-.++++.++|+++.+++ ++|+..+++...+.++.||+|||++++++ .+++++.+||||||||+++
T Consensus 12 ~~~~~l~~lq~~a~~~g--fdw~~~~~~~~~~~kl~EE~gEl~eai~~-------------~~~~~i~eELgDvLf~lv~ 76 (95)
T 1vmg_A 12 HMDLELKELQSKMKEMY--FEKDSQRGIYATFTWLVEEVGELAEALLS-------------NNLDSIQEELADVIAWTVS 76 (95)
T ss_dssp -CCCCHHHHHHHHHHHH--HHHHHHHCHHHHHHHHHHHHHHHHHHHHH-------------TCHHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHhC--CCCCcccCHHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHHHHHH
Confidence 35679999999999987 55765557888999999999999999973 3578999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHH
Q 033244 93 LADVCGLDLGQAALAKIV 110 (124)
Q Consensus 93 lA~~~giDle~al~~k~~ 110 (124)
+|+.+||||++|+..++.
T Consensus 77 lA~~lgiD~e~al~~k~~ 94 (95)
T 1vmg_A 77 IANLEGIDIEEALKKKYK 94 (95)
T ss_dssp HHHHHTCCHHHHHHHHSC
T ss_pred HHHHHCcCHHHHHHHHhc
Confidence 999999999999998864
No 9
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=99.66 E-value=2.9e-16 Score=118.46 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=83.7
Q ss_pred hccccCCcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHH
Q 033244 8 CVKKAYKDVSLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVL 87 (124)
Q Consensus 8 ~~~~~~~~m~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL 87 (124)
|+...|+.|.-..+|+++...+ ++|+ ++...+.++.||++||.+++... ..+.+.+++||||+|
T Consensus 137 vp~~lPaL~~A~kiq~raa~vG--fdw~---~~~~v~~Kl~EEl~El~eal~~~-----------~~~~~~ieeElGDlL 200 (265)
T 3cra_A 137 IPRSLPALMRAQKIQKRCANVG--FDWT---TLGPVVDKVYEEIDEVMYEARQA-----------VVDQAKLEEEMGDLL 200 (265)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTT--CSCS---SHHHHHHHHHHHHHHHHHHHHSS-----------SCCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhcC--CCCC---ChHHHHHHHHHHHHHHHHHHHhc-----------cCCHHHHHHHHHHHH
Confidence 6667888899999999987764 7787 67778999999999999998521 246789999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc
Q 033244 88 LYLIQLADVCGLDLGQAALAKIVKNARKYPVI 119 (124)
Q Consensus 88 ~~l~~lA~~~giDle~al~~k~~k~~~R~~~~ 119 (124)
|.++++|+++||||+.||...+.||.+||..-
T Consensus 201 FalVnlAR~~gIDpE~ALr~an~KF~~Rf~~~ 232 (265)
T 3cra_A 201 FATVNLARHLGTKAEIALQKANEKFERRFREV 232 (265)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998653
No 10
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=99.59 E-value=1.1e-14 Score=109.86 Aligned_cols=92 Identities=20% Similarity=0.285 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHH---hcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHH--
Q 033244 17 SLQELRDRLAEFAE---VRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLI-- 91 (124)
Q Consensus 17 ~i~elq~~i~~~~~---~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~-- 91 (124)
++.++...+...+. .+.|++.+|+.++...+.+|++||+++|. .++.++|.+|||||||.++
T Consensus 5 ~~~~L~~im~~LR~p~~gCPWD~~QT~~Sl~~yl~eE~~Ev~daI~-------------~~d~~~l~eELGDvLlqVvf~ 71 (265)
T 3cra_A 5 QIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIA-------------REDFDDLRGELGDLLFQVVFY 71 (265)
T ss_dssp HHHHHHHHHHHHHCTTTCCSSGGGCCHHHHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHH
Confidence 57888889988887 58999999999999999999999999998 3478999999999999766
Q ss_pred -HHHHHcC-CCHHHHHHHHHHHHHhhcCCccc
Q 033244 92 -QLADVCG-LDLGQAALAKIVKNARKYPVINQ 121 (124)
Q Consensus 92 -~lA~~~g-iDle~al~~k~~k~~~R~~~~~~ 121 (124)
.+|...| +|+++++....+|+.+||||.+.
T Consensus 72 a~ia~e~g~F~~~dV~~~~~~KlirRhPhvF~ 103 (265)
T 3cra_A 72 AQMAQEEGRFDFNDICAAISDKLERRHPHVFA 103 (265)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHTC------
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhhCCCCCC
Confidence 4555555 99999999999999999999874
No 11
>2yay_A Dutpase; hydrolase, leishmaniasis; HET: DUP; 1.86A {Leishmania major} PDB: 2yaz_A* 2yb0_A* 2cje_A*
Probab=98.73 E-value=4.7e-09 Score=79.33 Aligned_cols=81 Identities=25% Similarity=0.329 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 033244 17 SLQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADV 96 (124)
Q Consensus 17 ~i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~ 96 (124)
++-++|+.+..+.. ++|.+.++|.+.+++|..|+|||++.+.|+.-.... .+.+.+++.+|++||+.+++.+|..
T Consensus 19 ~L~eLQk~Ld~~i~-rdw~~~htpk~l~lAL~vElaELaE~~~WK~Wk~~~----~~~d~e~IleElVDvLHFlLSla~~ 93 (271)
T 2yay_A 19 SLAELQDGLNAMID-PSWRAVRSLDNWALAITMESTELLDSYPWKWWKNLN----ATPDLANVRIELVDIFHFSLSGAMQ 93 (271)
T ss_dssp HHHHHHHHHHHHHC-TTHHHHCCHHHHHHHHHHHHHHHHTTSCCCSSSSTT----CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhHhccCCHHHHHHHHHHHHHHHHHhhCcCchhccC----CcccHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999998887 889988899888999999999999887765211101 1456899999999999999999999
Q ss_pred cCCCHH
Q 033244 97 CGLDLG 102 (124)
Q Consensus 97 ~giDle 102 (124)
+|+|+.
T Consensus 94 lg~d~~ 99 (271)
T 2yay_A 94 MRSTPD 99 (271)
T ss_dssp HHTSCG
T ss_pred hCCChH
Confidence 999874
No 12
>2yf4_A MAZG-like nucleoside triphosphate pyrophosphohydr; hydrolase, dimeric dutpase; HET: GOL; 1.70A {Deinococcus radiodurans} PDB: 2yf3_A* 2yeu_A* 2yf9_A 2yfc_A* 2yfd_A*
Probab=98.34 E-value=1.4e-05 Score=55.72 Aligned_cols=97 Identities=22% Similarity=0.127 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcCCCCCC-----CHH---HHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHH
Q 033244 20 ELRDRLAEFAEVRGWKQYH-----SPR---NLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLI 91 (124)
Q Consensus 20 elq~~i~~~~~~~~w~~~~-----~~~---~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~ 91 (124)
+.-+.+.+|...++..... ++. -....+.||+.|+.+++................+..++.++|+|++..+.
T Consensus 15 ~~~~~V~eFH~~f~~~~~~~P~~~~~~~~~lR~~li~EEl~E~~e~~~~~~~~~~~~~A~~~~dlve~aDAL~DllYv~~ 94 (154)
T 2yf4_A 15 TNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTY 94 (154)
T ss_dssp CHHHHHHHHHHHHTCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGGHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccHHHHHHHHhChhhHHH
Confidence 4455566666655543222 222 24566799999999865432111111111124568899999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhc
Q 033244 92 QLADVCGLDLGQAALAKIVKNARKY 116 (124)
Q Consensus 92 ~lA~~~giDle~al~~k~~k~~~R~ 116 (124)
..+..+|||++.++.+-..-|..+.
T Consensus 95 G~~~~~Gid~~~vf~eVh~SNMsKl 119 (154)
T 2yf4_A 95 GALDQLGIDADAVFAEVHRANLSKA 119 (154)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999777777664
No 13
>1y6x_A Phosphoribosyl-ATP pyrophosphatase; helical bundle, histidine, hydrolase, ST genomics, PSI, protein structure initiative; 1.25A {Mycobacterium tuberculosis} SCOP: a.204.1.4 PDB: 3c90_X
Probab=98.25 E-value=1.7e-05 Score=50.90 Aligned_cols=80 Identities=24% Similarity=0.247 Sum_probs=60.4
Q ss_pred CcC-CHHHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHH
Q 033244 14 KDV-SLQELRDRLAEFAEVRGWKQY------HSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDV 86 (124)
Q Consensus 14 ~~m-~i~elq~~i~~~~~~~~w~~~------~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDv 86 (124)
.+| ++.+|.+.|.+-.....=..+ .++...+-++.||..|+.-+.+ .++++++..|.||+
T Consensus 5 ~~~~~l~~L~~~I~~Rk~~~pe~SYT~~L~~~G~~ki~kKvgEEA~E~iiAak-------------~~~~~~l~~E~ADL 71 (93)
T 1y6x_A 5 LAVKTFEDLFAELGDRARTRPADSTTVAALDGGVHALGKKLLEEAGEVWLAAE-------------HESNDALAEEISQL 71 (93)
T ss_dssp --CCSHHHHHHHHHHHHHHCCTTCHHHHHHHTCHHHHHHHHHHHHHHHHHHHH-------------HSCHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHcCCCCCcHHHHHHHCcHHHHHHHHHHHHHHHHHHHH-------------hCCHHHHHHHHHHH
Confidence 344 789999888865443221111 1234467899999999998876 35789999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHH
Q 033244 87 LLYLIQLADVCGLDLGQAAL 106 (124)
Q Consensus 87 L~~l~~lA~~~giDle~al~ 106 (124)
++.++.+....||++++++.
T Consensus 72 lYHllVlL~~~gv~l~dV~~ 91 (93)
T 1y6x_A 72 LYWTQVLMISRGLSLDDVYR 91 (93)
T ss_dssp HHHHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHh
Confidence 99999999999999999875
No 14
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4
Probab=98.17 E-value=1.3e-05 Score=51.84 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHh-cCCCCCC------CHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHH
Q 033244 17 SLQELRDRLAEFAEV-RGWKQYH------SPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLY 89 (124)
Q Consensus 17 ~i~elq~~i~~~~~~-~~w~~~~------~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~ 89 (124)
++.+|.+.|.+-... ..=..+. ++...+-++.||..|+.-+.+ .++++++..|.||+++.
T Consensus 5 ~L~~L~~~I~~Rk~~~~pe~SYT~~L~~kG~~kI~kKvgEEA~E~iiAak-------------~~d~~~l~~E~ADLlYH 71 (98)
T 1yxb_A 5 TFEELFTELQHKAANGDPATSRTAELVDKGVHAIGKKVVEEAAEVWMAAE-------------YEGKDAAAEEISQLLYH 71 (98)
T ss_dssp CHHHHHHHHHHHTCC----CCSSCCHHHHCHHHHHHHHHHHHHHHHHHHH-------------HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcHHHHHHHCcHHHHHHHHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHH
Confidence 467777777653221 1101110 233468899999999998876 35789999999999999
Q ss_pred HHHHHHHcCCCHHHHHHH
Q 033244 90 LIQLADVCGLDLGQAALA 107 (124)
Q Consensus 90 l~~lA~~~giDle~al~~ 107 (124)
++.+....||+|++++..
T Consensus 72 llVlL~~~gv~l~dV~~e 89 (98)
T 1yxb_A 72 VQVMMVARGISLDDVYAH 89 (98)
T ss_dssp HHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 999999999999999865
No 15
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=98.14 E-value=3.2e-05 Score=51.39 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHH
Q 033244 17 SLQELRDRLAEFAEVRGWKQY------HSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYL 90 (124)
Q Consensus 17 ~i~elq~~i~~~~~~~~w~~~------~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l 90 (124)
++.+|.+.|.+-.....=..+ .++...+-++.||..|+.-+.+ .++++++..|.||+|+.+
T Consensus 4 ~L~~L~~~I~~Rk~~~pe~SYT~~L~~kG~~kI~kKvgEEA~E~iiAak-------------~~d~~~l~~E~ADLlYHl 70 (115)
T 1yvw_A 4 AFKLLYKTIEERKGSPLPESYTNYLFSKGEDKILKKIGEECAEVIIACK-------------NNDKEEVVKEMVDVFYHC 70 (115)
T ss_dssp CHHHHHHHHHHHHHSCCTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHCcHHHHHHHHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHHH
Confidence 477777777654332210111 0233467889999999998876 457899999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHH
Q 033244 91 IQLADVCGLDLGQAALAKIVK 111 (124)
Q Consensus 91 ~~lA~~~giDle~al~~k~~k 111 (124)
+.+....||+|++++..-..+
T Consensus 71 lVlL~~~gv~l~dV~~eL~~R 91 (115)
T 1yvw_A 71 FVLLAEKNIALEDVMREVKER 91 (115)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999998765444
No 16
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=98.13 E-value=2.9e-05 Score=51.69 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHH
Q 033244 17 SLQELRDRLAEFAEVRGWKQY------HSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYL 90 (124)
Q Consensus 17 ~i~elq~~i~~~~~~~~w~~~------~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l 90 (124)
++.+|.+.|.+-.....=..+ .++...+-++.||..|+.-+.+ .++++++..|.||+|+.+
T Consensus 5 ~L~~L~~~I~~Rk~~~pe~SYT~~L~~kG~~kI~kKvgEEA~E~iiAak-------------~~d~~el~~E~ADLlYHl 71 (116)
T 2a7w_A 5 VLKNIADTLEARREAAPQSSYVASLFHKGEDAILKKVAEEAAETLMASK-------------DKDKLHLVREVADLWFHT 71 (116)
T ss_dssp CHHHHHHHHHHGGGSCTTTCHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHH
Confidence 477777777653221110000 0233467889999999988876 457899999999999999
Q ss_pred HHHHHHcCCCHHHHHHHH
Q 033244 91 IQLADVCGLDLGQAALAK 108 (124)
Q Consensus 91 ~~lA~~~giDle~al~~k 108 (124)
+.+....||+|++++..-
T Consensus 72 lVlL~~~gv~l~dV~~eL 89 (116)
T 2a7w_A 72 MVLLTYHGLRPEDVVMEL 89 (116)
T ss_dssp HHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 999999999999987653
No 17
>2rfp_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.74A {Exiguobacterium sibiricum} PDB: 3mqu_A 3nl9_A
Probab=98.07 E-value=4.8e-05 Score=53.73 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCCCCC-----CHH---HHHHHHHHH-HHHHHHHHHhh------------------hh--hhcCCCCCCC
Q 033244 23 DRLAEFAEVRGWKQYH-----SPR---NLLLALVGE-VGELSEIFQWR------------------GE--VARGLPNWSS 73 (124)
Q Consensus 23 ~~i~~~~~~~~w~~~~-----~~~---~~~~~l~eE-~gElae~v~~~------------------~~--~~~g~~~~~~ 73 (124)
+.+.+|...++..... ++. -+...+.|| +.|+++++... .. ...+. ..++
T Consensus 9 ~~VkeFH~~f~~p~~e~P~~~~~e~~~lR~~l~~EE~l~E~l~A~~~~~~~~~~~~~~l~~~id~a~~k~~~~~~-~~~~ 87 (171)
T 2rfp_A 9 QDVKQFHQTFHHPGADQPTAIPLDRGVKRATWTAEEAVVEFLHQSSQNETEFLAAIETFKAGLDQAVKKSLKETY-PVTE 87 (171)
T ss_dssp HHHHHHHHHTTCCCCSSCCCCCHHHHHHHHHHHHHHHTHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHTSCC-CCSH
T ss_pred HHHHHHHHHhCCCCcCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHhhccc-cccc
Confidence 4556666665544322 222 246667999 99999876311 00 01111 1111
Q ss_pred c-chhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCcc
Q 033244 74 D-DKEHLEEELSDVLLYLIQLADVCGLDLGQAALAKIVKNARKY-PVIN 120 (124)
Q Consensus 74 ~-~~~~l~eELgDvL~~l~~lA~~~giDle~al~~k~~k~~~R~-~~~~ 120 (124)
. +...+.++|+|++.++...+-.+|||++.++.+-..-|..+. +.++
T Consensus 88 ~~dlve~aDaL~Dl~Yv~~G~~~~~Gid~~~~~~eVh~SNmsKl~~dGk 136 (171)
T 2rfp_A 88 VERLVGQGDALTDALYFIMGSFVEAGLEPGPLFEIVQQANMAKLGPDGQ 136 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCTTSS
T ss_pred cccHHHHHHHHhCHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcCCCCC
Confidence 1 468899999999999999999999999999999999999985 5443
No 18
>1w2y_A Deoxyuridine 5'-triphosphate nucleotide hydrolase; DUTP pyrophosphatase, dimeric, ligand complex, magnesium IONS, pathogen, drug target; HET: DUN; 1.65A {Campylobacter jejuni} SCOP: a.204.1.1 PDB: 2cic_A*
Probab=97.16 E-value=0.0018 Score=47.59 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCHH----HHHHHHHHHHHHHHHHHHhhhhhhcCC-CCCCCcchhhHHHHHHHHHHHHH
Q 033244 17 SLQELRDRLAEFAEVRGWKQYHSPR----NLLLALVGEVGELSEIFQWRGEVARGL-PNWSSDDKEHLEEELSDVLLYLI 91 (124)
Q Consensus 17 ~i~elq~~i~~~~~~~~w~~~~~~~----~~~~~l~eE~gElae~v~~~~~~~~g~-~~~~~~~~~~l~eELgDvL~~l~ 91 (124)
++-++|+.+........|....++. ...+++..|+|||++...|+ .+.. + .+.+.+.+.+|+.|++..++
T Consensus 9 ~LfelQk~Ld~~I~~~~~~l~~~~~~~~~~~~lAl~vElaElae~~~wK---~WK~~~--~~~d~e~ileEyVDilHFiL 83 (229)
T 1w2y_A 9 NMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIYMECAELIDSFTWK---HWKNIS--SLTNWENVRIEIVDIWHFIL 83 (229)
T ss_dssp HHHHHHHHHHHHHHCTTGGGSBCTTCCBCCHHHHHHHHHHHHHTTSCCC---SSSSTT--CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhcccccchHHHHHHHHHHHHHHHHHHHHhhCCc---ccccCC--CCCCHHHHHHHHHHHHHHHH
Confidence 5667788887665423454221221 25688999999999776542 2221 1 13468899999999999988
Q ss_pred HHHHH
Q 033244 92 QLADV 96 (124)
Q Consensus 92 ~lA~~ 96 (124)
.++..
T Consensus 84 Si~l~ 88 (229)
T 1w2y_A 84 SLLLE 88 (229)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 19
>3nl9_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.78A {Exiguobacterium sibiricum 255-15}
Probab=97.12 E-value=0.0013 Score=46.44 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=37.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 033244 75 DKEHLEEELSDVLLYLIQLADVCGLDLGQAALAKIVKNARK 115 (124)
Q Consensus 75 ~~~~l~eELgDvL~~l~~lA~~~giDle~al~~k~~k~~~R 115 (124)
+...+.+.|+|+++.+...+..+|+|++.|+.+-..-|.++
T Consensus 90 d~ve~~DaL~D~~yv~~g~~~~~g~~~~~~~~eV~~sNmsK 130 (171)
T 3nl9_A 90 RLVGQGDALTDALYFIMGSFVEAGLEPGPLFEIVQQANMAK 130 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccc
Confidence 45678999999999999999999999999999999999888
No 20
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=96.36 E-value=0.0073 Score=38.00 Aligned_cols=51 Identities=35% Similarity=0.503 Sum_probs=39.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 033244 32 RGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADV 96 (124)
Q Consensus 32 ~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~ 96 (124)
+.|-++ +.+.++..|.+|+.||.+++. .++.+++.+||-||.-.++-+-..
T Consensus 51 rpwfdf-seerllsrlfeemdelreave-------------kedwenlrdelldvanfcmylwgk 101 (114)
T 2p06_A 51 RPWFDF-SEERLLSRLFEEMDELREAVE-------------KEDWENLRDELLDVANFCMYLWGK 101 (114)
T ss_dssp CHHHHS-CHHHHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccc-cHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444 345678999999999999997 358899999999998777655443
No 21
>1ogl_A Dutpase, deoxyuridine triphosphatase; hydrolase, native, X-RAY, dimer; 2.4A {Trypanosoma cruzi} SCOP: a.204.1.1 PDB: 1ogk_A
Probab=93.15 E-value=0.14 Score=38.74 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHc
Q 033244 18 LQELRDRLAEFAEVRGWKQYHSPRNLLLALVGEVGELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADVC 97 (124)
Q Consensus 18 i~elq~~i~~~~~~~~w~~~~~~~~~~~~l~eE~gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~~ 97 (124)
+-++|+.+..-.. ..|....+......++..|++||+..+.|+ .+... -.+.+.+.+.+|+.|++..++.++...
T Consensus 18 LfemQ~~LD~~I~-~~~~~~~~~~~~~lAL~VElaELane~~wK---~Wk~~-~~~~D~e~ileEyVDilHFiLSi~le~ 92 (283)
T 1ogl_A 18 LAHLQDGLNIFMD-PDWRQIRHVDDWALAITMESAELIDSYPWK---WWKNV-KAQTDMHNVRIEIADILHFSLSGEIQK 92 (283)
T ss_dssp HHHHHHHHHHHHC-TTHHHHCCHHHHHHHHHHHHHHHHHTSCCC---TTSCC-CSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHhccccHHHHHHHHHHHHHHHHHhhCCc---cccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555554332 234322233445789999999999998752 22110 013578899999999999999999998
Q ss_pred CCCHH
Q 033244 98 GLDLG 102 (124)
Q Consensus 98 giDle 102 (124)
+.+++
T Consensus 93 ~~~~~ 97 (283)
T 1ogl_A 93 RTQDE 97 (283)
T ss_dssp HTTC-
T ss_pred CCChh
Confidence 87654
No 22
>2cwo_A P21, RNA silencing suppressor; octamer, ring, head-TO-head, tail-TO-tail, all alpha helical binding protein, RNA binding protein; 3.30A {Beet yellows virus}
Probab=69.13 E-value=5.4 Score=27.07 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=24.2
Q ss_pred HHHHH-HHHHHHHcCCCHHHHHHHHHHHHHh
Q 033244 85 DVLLY-LIQLADVCGLDLGQAALAKIVKNAR 114 (124)
Q Consensus 85 DvL~~-l~~lA~~~giDle~al~~k~~k~~~ 114 (124)
|.|-. +-..|+..|+.-++|+.+||.|.+.
T Consensus 124 ~tlnafl~eycri~gl~redalrekmrkv~s 154 (197)
T 2cwo_A 124 DTLNAFLEEYCRITGLAREDALREKMRKVKS 154 (197)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHSBHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 44433 4478999999999999999999875
No 23
>2yay_A Dutpase; hydrolase, leishmaniasis; HET: DUP; 1.86A {Leishmania major} PDB: 2yaz_A* 2yb0_A* 2cje_A*
Probab=68.56 E-value=8.3 Score=28.80 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccccCC
Q 033244 83 LSDVLLYLIQLADVCGLDLGQAALAKIVKNARKYPVINQKSS 124 (124)
Q Consensus 83 LgDvL~~l~~lA~~~giDle~al~~k~~k~~~R~~~~~~~~~ 124 (124)
+..++-.++.++..+|+++..++..|...|..|..++=..||
T Consensus 157 ~~~l~~~Fl~Lg~~lGfsI~~aY~~KN~lN~~RQ~~GYkeGt 198 (271)
T 2yay_A 157 FDVIIECIIYAAEDLGFNLVAYYIAKHTLNCIRQLSGYKDGS 198 (271)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHcCCcccc
Confidence 444466678899999999999999999999999666666665
No 24
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=64.54 E-value=14 Score=19.70 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 033244 87 LLYLIQLADVCGLDLGQAALAKIVKNARKYPV 118 (124)
Q Consensus 87 L~~l~~lA~~~giDle~al~~k~~k~~~R~~~ 118 (124)
+-.|-.+|...|++..+++...+..+..++..
T Consensus 21 ~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~~~ 52 (55)
T 2k9i_A 21 HDRLMEIAKEKNLTLSDVCRLAIKEYLDNHDK 52 (55)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHh
Confidence 34566789999999999999999998877654
No 25
>1ogl_A Dutpase, deoxyuridine triphosphatase; hydrolase, native, X-RAY, dimer; 2.4A {Trypanosoma cruzi} SCOP: a.204.1.1 PDB: 1ogk_A
Probab=55.59 E-value=11 Score=28.23 Aligned_cols=38 Identities=16% Similarity=-0.049 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccccCC
Q 033244 87 LLYLIQLADVCGLDLGQAALAKIVKNARKYPVINQKSS 124 (124)
Q Consensus 87 L~~l~~lA~~~giDle~al~~k~~k~~~R~~~~~~~~~ 124 (124)
+-.++.++..+|+++..++..|...|..|..++=..||
T Consensus 176 ~~~fl~Lg~~lGfsI~~aYv~KN~lN~~RQ~~GYKeG~ 213 (283)
T 1ogl_A 176 TKGLLLAAQDLDFNLVGYYVAKYTLNQIRQLKGYKEGV 213 (283)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHSHHHHTTC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHcCCccce
Confidence 44567899999999999999999999999666655554
No 26
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=54.02 E-value=16 Score=17.06 Aligned_cols=14 Identities=43% Similarity=0.515 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q 033244 46 ALVGEVGELSEIFQ 59 (124)
Q Consensus 46 ~l~eE~gElae~v~ 59 (124)
.|..|+|||.-.++
T Consensus 4 qlkdevgelkgevr 17 (27)
T 3v86_A 4 QLKDEVGELKGEVR 17 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHH
Confidence 36678888876665
No 27
>2adl_A CCDA; ribbon-helix-helix, DNA binding protein; NMR {Escherichia coli} PDB: 2adn_A 2h3a_A 2h3c_A
Probab=49.69 E-value=18 Score=21.32 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 033244 90 LIQLADVCGLDLGQAALAKIVKNARKYPV 118 (124)
Q Consensus 90 l~~lA~~~giDle~al~~k~~k~~~R~~~ 118 (124)
|...|..+||++...+...+.+-.+|...
T Consensus 13 L~~~a~~~~iN~S~~l~~aL~~~ir~~~~ 41 (72)
T 2adl_A 13 SYQLLKAYDVNISGLVSTTMQNEARRLRA 41 (72)
T ss_dssp THHHHHHTTCCCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34569999999999999999887776543
No 28
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=49.55 E-value=47 Score=21.02 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 033244 85 DVLLYLIQLADVCGLDLGQAALAKIVK 111 (124)
Q Consensus 85 DvL~~l~~lA~~~giDle~al~~k~~k 111 (124)
+|+--++-+|..+++|.++.+..-|+-
T Consensus 45 ~VldKc~ELC~~y~lda~e~VeeWmAF 71 (101)
T 2keb_A 45 ALIEKLVELCVQYGQNEEGMVGELIAF 71 (101)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 567778888888888888777665554
No 29
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=48.35 E-value=25 Score=22.57 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=19.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 033244 75 DKEHLEEELSDVLLYLIQLADVCGLDLGQA 104 (124)
Q Consensus 75 ~~~~l~eELgDvL~~l~~lA~~~giDle~a 104 (124)
..+++.+++.+|+ +-.+|+++|+|.++.
T Consensus 82 ~~~el~~~V~~vv--vhEiahh~G~~~e~l 109 (114)
T 3e11_A 82 TESEVIDEVRKTV--VHEIAHHFGIDDERL 109 (114)
T ss_dssp SHHHHHHHHHHHH--HHHHHHHTTCCHHHH
T ss_pred ChhHHHHHHHHHH--HHHHHHHcCCCHHHH
Confidence 3455666666655 348899999999875
No 30
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=43.27 E-value=42 Score=18.97 Aligned_cols=25 Identities=8% Similarity=-0.307 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 033244 88 LYLIQLADVCGLDLGQAALAKIVKN 112 (124)
Q Consensus 88 ~~l~~lA~~~giDle~al~~k~~k~ 112 (124)
-.+..+|..+|+++++.+......+
T Consensus 54 ~~l~~ia~~l~v~~~~l~~~~~~~~ 78 (82)
T 3s8q_A 54 KSLELIMKGLEVSDVVFFEMLIKEI 78 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHhcCChHhh
Confidence 3577889999999999988766543
No 31
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=39.20 E-value=49 Score=19.98 Aligned_cols=25 Identities=8% Similarity=-0.295 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH
Q 033244 89 YLIQLADVCGLDLGQAALAKIVKNA 113 (124)
Q Consensus 89 ~l~~lA~~~giDle~al~~k~~k~~ 113 (124)
.+..||..+|+++++.+......+.
T Consensus 72 ~l~~ia~~l~v~~~~l~~~~~~e~~ 96 (99)
T 3g5g_A 72 SLELIMKGLEVSDVVFFEMLIKEIL 96 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHhccCHHHHh
Confidence 5778999999999999887666543
No 32
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=36.22 E-value=78 Score=19.72 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 033244 86 VLLYLIQLADVCGLDLGQAALAKIVK 111 (124)
Q Consensus 86 vL~~l~~lA~~~giDle~al~~k~~k 111 (124)
+.-++..+|..+|+|+++.+......
T Consensus 54 ~~~~l~~iA~~Lgv~~~~L~~~~~~~ 79 (112)
T 2wus_R 54 IKSYIKRYSEFLELSPDEMLKLYEEG 79 (112)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHhh
Confidence 45568899999999999988765544
No 33
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=34.50 E-value=48 Score=16.72 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 033244 86 VLLYLIQLADVCGLDLGQAALAKIVKNARKY 116 (124)
Q Consensus 86 vL~~l~~lA~~~giDle~al~~k~~k~~~R~ 116 (124)
++-.|-.+|...|++-.+++...+..+..++
T Consensus 13 l~~~Ld~~a~~~g~srS~~ir~ai~~~l~~~ 43 (45)
T 2cpg_A 13 VLENLEKMAREMGLSKSAMISVALENYKKGQ 43 (45)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 3445567888899999999999888876653
No 34
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=33.37 E-value=26 Score=26.00 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 033244 83 LSDVLLYLIQLADVCGLDLGQAALAKIVKNA 113 (124)
Q Consensus 83 LgDvL~~l~~lA~~~giDle~al~~k~~k~~ 113 (124)
=+=+|-|++.||+.+|.|+-+++.....|+.
T Consensus 99 Q~llLQYIlELak~L~~dpr~~v~~FF~ki~ 129 (265)
T 1us7_B 99 QTIVMQFILELAKSLKVDPRACFRQFFTKIK 129 (265)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHHHHh
Confidence 3667888999999999998888888888875
No 35
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=32.66 E-value=46 Score=18.76 Aligned_cols=21 Identities=10% Similarity=-0.088 Sum_probs=17.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 033244 89 YLIQLADVCGLDLGQAALAKI 109 (124)
Q Consensus 89 ~l~~lA~~~giDle~al~~k~ 109 (124)
.+..+|..+|+++++.+....
T Consensus 58 ~l~~l~~~l~~~~~~l~~~~~ 78 (83)
T 3f6w_A 58 EFMDFCRGIGTDPYALLSKLE 78 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 678899999999998876543
No 36
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=30.81 E-value=48 Score=18.83 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCCHHHHHH
Q 033244 89 YLIQLADVCGLDLGQAAL 106 (124)
Q Consensus 89 ~l~~lA~~~giDle~al~ 106 (124)
.+..||..+|++++..+.
T Consensus 55 ~l~~ia~~l~v~~~~l~~ 72 (78)
T 3qq6_A 55 FLEKVSAVLDVSVHTLLD 72 (78)
T ss_dssp HHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHCcCHHHHhC
Confidence 577889999999988765
No 37
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=30.18 E-value=60 Score=17.80 Aligned_cols=20 Identities=0% Similarity=-0.079 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCCHHHHHHHH
Q 033244 89 YLIQLADVCGLDLGQAALAK 108 (124)
Q Consensus 89 ~l~~lA~~~giDle~al~~k 108 (124)
.+..+|..+|++++..+...
T Consensus 54 ~l~~la~~l~~~~~~l~~~~ 73 (77)
T 2b5a_A 54 NIHKICAALDIPASTFFRKM 73 (77)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHhccc
Confidence 47788999999999888654
No 38
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=30.15 E-value=46 Score=17.67 Aligned_cols=17 Identities=12% Similarity=0.010 Sum_probs=14.0
Q ss_pred HHHHHHHcCCCHHHHHH
Q 033244 90 LIQLADVCGLDLGQAAL 106 (124)
Q Consensus 90 l~~lA~~~giDle~al~ 106 (124)
+..+|..+|++++..+.
T Consensus 50 l~~i~~~l~~~~~~l~~ 66 (68)
T 2r1j_L 50 LLALSKALQCSPDYLLK 66 (68)
T ss_dssp HHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHhCCCHHHHhc
Confidence 67789999999988764
No 39
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=28.93 E-value=53 Score=18.70 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCCHHHHHH
Q 033244 89 YLIQLADVCGLDLGQAAL 106 (124)
Q Consensus 89 ~l~~lA~~~giDle~al~ 106 (124)
.+..+|..+|+++++.+.
T Consensus 59 ~l~~ia~~l~v~~~~l~~ 76 (86)
T 2ofy_A 59 TIAAVARVLDLSLDDVAA 76 (86)
T ss_dssp HHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHhCCCHHHHhc
Confidence 467899999999988764
No 40
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=28.13 E-value=1.3e+02 Score=21.58 Aligned_cols=49 Identities=16% Similarity=0.033 Sum_probs=33.2
Q ss_pred HHHHHHHHhhhhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 033244 52 GELSEIFQWRGEVARGLPNWSSDDKEHLEEELSDVLLYLIQLADVCGLDLGQAALAKI 109 (124)
Q Consensus 52 gElae~v~~~~~~~~g~~~~~~~~~~~l~eELgDvL~~l~~lA~~~giDle~al~~k~ 109 (124)
.-..+++.+.++..... ....||||+|+.+...-+.+.-+++..+....
T Consensus 51 ~~y~dA~~Kige~A~~S---------~~skeLG~vL~qis~~hR~i~~~le~~~k~f~ 99 (222)
T 3ok8_A 51 EVYFSAIQKIGEQALQS---------STSQILGEILVQMSDTQRHLNSDLEVVVQTFH 99 (222)
T ss_dssp HHHHHHHHHHHHHHHHS---------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC---------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466776655433221 12479999999999998888888887666544
No 41
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=27.99 E-value=63 Score=17.99 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCCHHHHHHH
Q 033244 89 YLIQLADVCGLDLGQAALA 107 (124)
Q Consensus 89 ~l~~lA~~~giDle~al~~ 107 (124)
.+..+|..+|+++++.+..
T Consensus 46 ~l~~ia~~l~v~~~~l~~~ 64 (77)
T 2k9q_A 46 KYIAFLRSKGVDLNALFDR 64 (77)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHhCc
Confidence 4668899999999988764
No 42
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=26.39 E-value=78 Score=18.82 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=15.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 033244 92 QLADVCGLDLGQAALAKIVKNA 113 (124)
Q Consensus 92 ~lA~~~giDle~al~~k~~k~~ 113 (124)
.++..+|+++.+|+...+....
T Consensus 18 ~v~~~lGl~~s~Ai~~fl~~v~ 39 (79)
T 4fxe_A 18 AALEKMGVTPSEALRLMLEYIA 39 (79)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHH
Confidence 3456778888877777776665
No 43
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=26.37 E-value=56 Score=17.44 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.4
Q ss_pred HHHHHHHcCCCHHHHHHH
Q 033244 90 LIQLADVCGLDLGQAALA 107 (124)
Q Consensus 90 l~~lA~~~giDle~al~~ 107 (124)
+..+|..+|++++..+..
T Consensus 45 l~~la~~l~~~~~~l~~~ 62 (69)
T 1r69_A 45 LPELASALGVSVDWLLNG 62 (69)
T ss_dssp HHHHHHHTTCCHHHHHHC
T ss_pred HHHHHHHHCcCHHHHhCC
Confidence 667888999999887753
No 44
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=25.18 E-value=58 Score=17.47 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=13.8
Q ss_pred HHHHHHHcCCCHHHHHH
Q 033244 90 LIQLADVCGLDLGQAAL 106 (124)
Q Consensus 90 l~~lA~~~giDle~al~ 106 (124)
+..+|..+|++++..+.
T Consensus 47 l~~i~~~l~~~~~~l~~ 63 (71)
T 1zug_A 47 LFEIAMALNCDPVWLQY 63 (71)
T ss_dssp HHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHCCCHHHHhC
Confidence 66788899999988764
No 45
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=25.10 E-value=50 Score=18.21 Aligned_cols=18 Identities=6% Similarity=0.067 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCCHHHHHH
Q 033244 89 YLIQLADVCGLDLGQAAL 106 (124)
Q Consensus 89 ~l~~lA~~~giDle~al~ 106 (124)
.+..+|..+|+++++.+.
T Consensus 52 ~l~~ia~~l~~~~~~l~~ 69 (78)
T 3b7h_A 52 TIRKVCGTLGISVHDFFD 69 (78)
T ss_dssp HHHHHHHHHTCCHHHHTC
T ss_pred HHHHHHHHcCCCHHHHhc
Confidence 466788899999988763
No 46
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.97 E-value=64 Score=17.58 Aligned_cols=18 Identities=11% Similarity=0.019 Sum_probs=14.8
Q ss_pred HHHHHHHcCCCHHHHHHH
Q 033244 90 LIQLADVCGLDLGQAALA 107 (124)
Q Consensus 90 l~~lA~~~giDle~al~~ 107 (124)
+..+|..+|++++..+..
T Consensus 50 l~~ia~~l~~~~~~l~~~ 67 (76)
T 1adr_A 50 LLALSKALQCSPDYLLKG 67 (76)
T ss_dssp HHHHHHHTTSCHHHHHHT
T ss_pred HHHHHHHHCcCHHHHhcC
Confidence 677899999999987753
No 47
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=22.86 E-value=1.3e+02 Score=17.83 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=21.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhh
Q 033244 90 LIQLADVCGLDLGQAALAKIVKNARK 115 (124)
Q Consensus 90 l~~lA~~~giDle~al~~k~~k~~~R 115 (124)
...||..+||+...++...+.++++.
T Consensus 28 a~eiA~~Lgit~~~aVr~hL~~Le~e 53 (79)
T 1xmk_A 28 ALNLAKNIGLTKARDINAVLIDMERQ 53 (79)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHC
Confidence 56889999999988899988888764
No 48
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=22.02 E-value=46 Score=17.56 Aligned_cols=17 Identities=12% Similarity=0.047 Sum_probs=13.3
Q ss_pred HHHHHHHHcCCCHHHHH
Q 033244 89 YLIQLADVCGLDLGQAA 105 (124)
Q Consensus 89 ~l~~lA~~~giDle~al 105 (124)
.+..+|..+|++++..+
T Consensus 45 ~l~~i~~~l~~~~~~l~ 61 (66)
T 2xi8_A 45 LALKIAYYLNTPLEDIF 61 (66)
T ss_dssp HHHHHHHHTTSCHHHHE
T ss_pred HHHHHHHHHCcCHHHHh
Confidence 46778889999988754
No 49
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=21.73 E-value=1.3e+02 Score=18.08 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Q 033244 88 LYLIQLADVCGLDLGQAALAKIVK 111 (124)
Q Consensus 88 ~~l~~lA~~~giDle~al~~k~~k 111 (124)
-.+..+|..+|+++++.+......
T Consensus 71 ~~l~~la~~l~v~~~~l~~~~~~~ 94 (117)
T 3f52_A 71 ELLASVCHALGASVADVLIEAAGS 94 (117)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHhccccc
Confidence 357788999999999888765543
No 50
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=21.65 E-value=96 Score=21.60 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=17.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 033244 92 QLADVCGLDLGQAALAKIVKNARKYPV 118 (124)
Q Consensus 92 ~lA~~~giDle~al~~k~~k~~~R~~~ 118 (124)
.+|..+|+++++++..---.+.++|.+
T Consensus 22 ~vAek~~~~~Eely~~i~w~L~~kyG~ 48 (188)
T 1yz7_A 22 LAAEKLGKDFETAWREVWVPLEEEWGE 48 (188)
T ss_dssp HHHHHTTCCHHHHHHHTHHHHHHHHSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCc
Confidence 345566777777766666666666654
No 51
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=21.60 E-value=79 Score=20.07 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCCHHHHHHH
Q 033244 88 LYLIQLADVCGLDLGQAALA 107 (124)
Q Consensus 88 ~~l~~lA~~~giDle~al~~ 107 (124)
-++..+|+.+|+|+++.+..
T Consensus 52 ~~l~~ia~~L~v~~~~l~~~ 71 (130)
T 3fym_A 52 GFIRKYASVVNIEPNQLIQA 71 (130)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHH
Confidence 34778999999999988864
No 52
>1t6u_A Superoxide dismutase [NI]; nickel, 4-helix bundle, hexamer, nisod, SOD, high resolution, oxidoreductase; 1.30A {Streptomyces coelicolor} SCOP: a.24.22.1 PDB: 1t6q_A 1t6i_A 3g4z_A 3g4x_A 3g50_A 1q0g_A 1q0f_A 1q0d_A 1q0k_A 1q0m_A
Probab=21.44 E-value=92 Score=20.19 Aligned_cols=27 Identities=19% Similarity=-0.012 Sum_probs=12.8
Q ss_pred cccchhccccCCcCCHHHHHHHHHHHH
Q 033244 3 KSSYECVKKAYKDVSLQELRDRLAEFA 29 (124)
Q Consensus 3 ~~~~~~~~~~~~~m~i~elq~~i~~~~ 29 (124)
|+.||.++++..--.+-++--.+...+
T Consensus 59 wtdYFk~~~~e~Yp~lh~l~h~~~~~a 85 (117)
T 1t6u_A 59 WSDYFKPPHFEKYPELHQLVNDTLKAM 85 (117)
T ss_dssp HHHTCCHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHhhccCCCHHHhHHHHHHHHHHHHHH
Confidence 455666664444444444444444333
No 53
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=20.94 E-value=1.7e+02 Score=18.46 Aligned_cols=42 Identities=14% Similarity=-0.050 Sum_probs=31.9
Q ss_pred chhhHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhhc
Q 033244 75 DKEHLEEELSDVLLYLIQL-ADVCGLDLGQAALAKIVKNARKY 116 (124)
Q Consensus 75 ~~~~l~eELgDvL~~l~~l-A~~~giDle~al~~k~~k~~~R~ 116 (124)
+.+....=|+|+.-.+... |+..|++.++++.+-.+-|....
T Consensus 45 ~p~~WG~lLaDlarHaA~a~a~~~~~s~~eal~rI~egF~~El 87 (101)
T 3ic3_A 45 DPEMWGLLLVDIARHAARSYARESEYTEDEALERIVEMFEAEL 87 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3555666678877776655 78889999999999888777654
No 54
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=20.43 E-value=1.4e+02 Score=23.56 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 033244 82 ELSDVLLYLIQLADVCGLDLGQAALAKIVKNARKY 116 (124)
Q Consensus 82 ELgDvL~~l~~lA~~~giDle~al~~k~~k~~~R~ 116 (124)
-+||||+...-.+..+| ++.+|+ ..+++++.|-
T Consensus 390 RyAEvlL~yAEA~~e~g-~~~~a~-~~iN~VR~RA 422 (517)
T 3qnk_A 390 RYAEIYLNDAEARLETG-DVEGAR-KAVNMIRQRV 422 (517)
T ss_dssp EHHHHHHHHHHHHHHHT-CHHHHH-HHHHHHHHTT
T ss_pred EHHHHHHHHHHHHHHhC-ChHHHH-HHHHHHHHhC
Confidence 38999998887777777 567777 6789999884
Done!