BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033245
         (123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JZU|A Chain A, Cell Transformation By The Myc Oncogene Activates
          Expression Of A Lipocalin: Analysis Of The Gene (Q83)
          And Solution Structure Of Its Protein Product
 pdb|2KT4|B Chain B, Lipocalin Q83 Is A Siderocalin
 pdb|2LBV|A Chain A, Siderocalin Q83 Reveals A Dual Ligand Binding Mode
          Length = 157

 Score = 26.2 bits (56), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 25 VSVLGS-EIDVNYVMPQSQSQRVCSKSIEDCFTDAELMESESS-RRVLVMQKKYISY 79
          +S LG  E+ V+Y +P+    R    + +    D E+  SE + ++V V+   Y SY
Sbjct: 39 ISFLGEDELKVSYAVPKPNGCRKWETTFKKTSDDGEVYYSEEAKKKVEVLDTDYKSY 95


>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition
           Motif Resembles Histone H5
          Length = 102

 Score = 25.8 bits (55), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 90  DKPG-ASYYECHSGQANSYNRGCQI 113
           DKPG  SY+  H    N +  GC +
Sbjct: 69  DKPGKGSYWALHPSSGNMFENGCYL 93


>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
           From Pisum Sativum L.
 pdb|3KSC|B Chain B, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
           From Pisum Sativum L.
 pdb|3KSC|C Chain C, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
           From Pisum Sativum L.
 pdb|3KSC|D Chain D, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
           From Pisum Sativum L.
 pdb|3KSC|E Chain E, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
           From Pisum Sativum L.
 pdb|3KSC|F Chain F, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
           From Pisum Sativum L
          Length = 496

 Score = 25.8 bits (55), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 22  CNGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFT 56
           CNG +V   E++    +   Q+  V +KS+ D F+
Sbjct: 397 CNGNTVFDGELEAGRALTVPQNYAVAAKSLSDRFS 431


>pdb|3SAO|A Chain A, The Siderocalin Ex-Fabp Functions Through Dual Ligand
          Specificities
 pdb|3SAO|B Chain B, The Siderocalin Ex-Fabp Functions Through Dual Ligand
          Specificities
          Length = 160

 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 25 VSVLGS-EIDVNYVMPQSQSQRVCSKSIEDCFTDAELMESESSRR-VLVMQKKYISY 79
          +S LG  E++V+Y  P  +  R    + +    D E+  SE + + V V+   Y SY
Sbjct: 38 ISFLGEDELEVSYAAPSPKGCRKWETTFKKTSDDGEVYYSEEAEKTVEVLDTDYKSY 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.132    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,117,454
Number of Sequences: 62578
Number of extensions: 99059
Number of successful extensions: 210
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 5
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)