BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033245
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2HIM9|RLF31_ARATH Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1
Length = 113
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 57 DAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITR 116
D +LM +E SRRVL+ QK+YI Y+TLRRDMVPC KPGASYY+C SGQANSY+RGC ITR
Sbjct: 44 DEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSGQANSYSRGCDTITR 103
Query: 117 CAR 119
CAR
Sbjct: 104 CAR 106
>sp|Q9LK37|RLF24_ARATH Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1
Length = 118
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/57 (78%), Positives = 52/57 (91%)
Query: 63 SESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCAR 119
SE SRRV++M+K+YISY+TLRRDMVPC KPGASYY C SGQAN+YNRGC +ITRCAR
Sbjct: 55 SEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSGQANAYNRGCSVITRCAR 111
>sp|Q945T0|RALF_TOBAC Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1
Length = 115
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 9/109 (8%)
Query: 12 LFTAAVFLQICNGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFTDAEL--MESESSRRV 69
+ A F+ + + G ++VMP ++S C SI +C + E ++SES+RR+
Sbjct: 11 VLIGAFFISM----AAAGDSGAYDWVMP-ARSGGGCKGSIGECIAEEEEFELDSESNRRI 65
Query: 70 LVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QANSYNRGCQIITRC 117
L KKYISY L+++ VPC + GASYY C G QAN Y+RGC ITRC
Sbjct: 66 LA-TKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRC 113
>sp|Q8L9P8|RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1
Length = 116
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 51/78 (65%), Gaps = 6/78 (7%)
Query: 47 CSKSIEDC-FTDAEL---MESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG 102
C+ +I +C + AE M+SE +RR+L K YISY LRR+ VPC + GASYY C G
Sbjct: 40 CNGTIAECSLSTAEEEFEMDSEINRRILATTK-YISYGALRRNTVPCSRRGASYYNCRRG 98
Query: 103 -QANSYNRGCQIITRCAR 119
QAN Y+RGC ITRC R
Sbjct: 99 AQANPYSRGCSAITRCRR 116
>sp|Q9MA62|RLF22_ARATH Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1
Length = 119
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 61 MESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QANSYNRGCQIITRCAR 119
+S+ SRR+L QKKYISY +RR+ VPC + GASYY C G QAN Y+RGC ITRC R
Sbjct: 61 FDSDISRRILA-QKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119
>sp|Q9SRY3|RLF1_ARATH Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1
Length = 120
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 47 CSKSIEDCF-TDAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QA 104
C SI +C + E M+SE +RR+L KYISY +L+R+ VPC + GASYY C +G QA
Sbjct: 47 CHGSIAECIGAEEEEMDSEINRRILAT-TKYISYQSLKRNSVPCSRRGASYYNCQNGAQA 105
Query: 105 NSYNRGCQIITRC 117
N Y+RGC I RC
Sbjct: 106 NPYSRGCSKIARC 118
>sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23
PE=1 SV=1
Length = 138
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 62 ESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QANSYNRGCQIITRCAR 119
+SE +RR+L ++YISY LRR+ +PC + GASYY C G QAN Y+RGC ITRC R
Sbjct: 80 DSEINRRILAT-RRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137
>sp|Q6NME6|RLF19_ARATH Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1
Length = 110
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 60 LMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHS-GQANSYNRGCQIITRCA 118
LM+SE++RR L ++ YISY LR++ VPC + G SYY+C +AN Y RGC +IT C
Sbjct: 47 LMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCY 106
Query: 119 R 119
R
Sbjct: 107 R 107
>sp|Q9FZA0|RLF4_ARATH Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1
Length = 110
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 60 LMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANS-YNRGCQIITRCA 118
LM+SE++RR L ++YI YD L+++ VPC + G SYY+C + N+ Y RGC IT C
Sbjct: 47 LMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCY 106
Query: 119 R 119
R
Sbjct: 107 R 107
>sp|O23262|RLF32_ARATH Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1
Length = 117
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 5 EVINVRILFTAAVFLQICNGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFTDAE----- 59
E+ RI T +F +C + + +V ++ S +C+ S+ +C + E
Sbjct: 2 EIKPSRIFSTITIFF-LC---------LLLAHVTSKASSSSLCNGSVAECSSMVETEEMS 51
Query: 60 -LMESESSRRVLVMQKKYISYDTLRRDMVPCD--KPGASY-YECHSGQANSYNRGCQIIT 115
+MES SS+R+ Q +SY LRR+ CD K G SY +C +N Y+RGC
Sbjct: 52 VIMESWSSQRLTEEQAHKLSYGALRRNQPACDGGKRGESYSTQCLPPPSNPYSRGCSKHY 111
Query: 116 RCAR 119
RC R
Sbjct: 112 RCGR 115
>sp|Q9FHA6|RLF34_ARATH Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1
Length = 129
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 35 NYVMPQSQSQRVCSKSIEDCFTDAELMESESSRRVLVMQ--KKYISYDTLRRDMVPCD-K 91
+ P S S E+ F E + + RR L + K YISY L + VPC +
Sbjct: 38 GFDWPISHSDEFDIIDGEESFEVTEEDDGVTDRRSLYWRRTKYYISYGALSANRVPCPPR 97
Query: 92 PGASYYECH----SGQANSYNRGCQIITRCAR 119
G SYY + G + Y+RGC ITRC R
Sbjct: 98 SGRSYYTHNCFRARGPVHPYSRGCSSITRCRR 129
>sp|A8MQM2|RLF6_ARATH Protein RALF-like 6 OS=Arabidopsis thaliana GN=RALFL6 PE=3 SV=1
Length = 81
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 76 YISYDTLRRDMVP-CDKPGASYYECHSGQANSYNRGCQIITRCAR 119
YI+Y+ ++ D++P C EC A SYNRGC+I TRC R
Sbjct: 32 YINYNGMKGDIIPGCSSKNPK--ECVKIPAYSYNRGCEISTRCQR 74
>sp|A8MRD4|RLF7_ARATH Protein RALF-like 7 OS=Arabidopsis thaliana GN=RALFL7 PE=3 SV=1
Length = 81
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 75 KYISYDTLRRDMVP-CDKPGASYYECHSGQANSYNRGCQIITRCAR 119
K I+Y L +D +P C EC AN+Y+RGC+I TRC R
Sbjct: 31 KQINYKDLIKDTIPGCTSKNPK--ECVKVPANTYHRGCEISTRCHR 74
>sp|Q3ECL0|RLF9_ARATH Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1
Length = 75
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 71 VMQKKYISYDTLRR--DMVPCDKPGASYYECHSGQANSYNRGCQIITRCARG 120
V +YI+Y + R V CDK A C +AN Y RGC+ I RC G
Sbjct: 26 VEATRYITYPAIDRGDHAVHCDK--AHPNTCKKKEANPYQRGCEKINRCRGG 75
>sp|Q1ECR9|RLF8_ARATH Protein RALF-like 8 OS=Arabidopsis thaliana GN=RALFL8 PE=2 SV=1
Length = 82
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 75 KYISYDTLRR--DMVPCDKPGASYYECHSGQANSYNRGCQIITRCAR 119
+YI+Y + R V CDK A C QAN Y RGC ++ C R
Sbjct: 31 RYITYPAIDRGDHAVHCDK--AHPNTCKKKQANPYRRGCGVLEGCHR 75
>sp|A8MRM1|RLF16_ARATH Protein RALF-like 16 OS=Arabidopsis thaliana GN=RALFL16 PE=3 SV=1
Length = 95
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 73 QKKYISYDTLRRDMVP-CDKPGASYYECHSGQANSYNRGCQIITRCAR 119
+ + + Y +++ D +P C + C N Y+RGC+ ITRCAR
Sbjct: 28 EARTLGYGSIKGDRIPACGYKNPN--SCVKQPVNHYHRGCEKITRCAR 73
>sp|A1QZH7|RPOB_BORT9 DNA-directed RNA polymerase subunit beta OS=Borrelia turicatae
(strain 91E135) GN=rpoB PE=3 SV=1
Length = 1155
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 48 SKSIEDCFTDAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASY 96
++ +E F D M+S + L +K Y+ YD+L C + G SY
Sbjct: 46 NEGLESVFRDVFPMKSSNGEVALEYEKYYVEYDSLSFTEKECKRKGQSY 94
>sp|A8MQI8|RLF5_ARATH Protein RALF-like 5 OS=Arabidopsis thaliana GN=RALFL5 PE=2 SV=1
Length = 89
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 74 KKYISYDTLRRDMVPCDKPGASYYECHS-GQANSYNRGCQIITRCAR 119
K+YI Y ++ PC+ P +C+ AN Y RGC I+RC R
Sbjct: 26 KRYIEYPPWQKH--PCN-PRFPTPDCYKRTPANPYRRGCTCISRCRR 69
>sp|B5RRJ7|RPOB_BORRA DNA-directed RNA polymerase subunit beta OS=Borrelia recurrentis
(strain A1) GN=rpoB PE=3 SV=1
Length = 1155
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 48 SKSIEDCFTDAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASY 96
++ +E F D M+S + L +K YI YD++ C + G SY
Sbjct: 46 NEGLESVFRDVFPMKSSNGEVALEYEKYYIEYDSISFTEKECKRKGQSY 94
>sp|B5RLU9|RPOB_BORDL DNA-directed RNA polymerase subunit beta OS=Borrelia duttonii
(strain Ly) GN=rpoB PE=3 SV=1
Length = 1155
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 48 SKSIEDCFTDAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASY 96
++ +E F D M+S + L +K YI YD++ C + G SY
Sbjct: 46 NEGLESVFRDVFPMKSSNGEVALEYEKYYIEYDSISFTEKECKRKGQSY 94
>sp|B2S092|RPOB_BORHD DNA-directed RNA polymerase subunit beta OS=Borrelia hermsii
(strain DAH) GN=rpoB PE=3 SV=1
Length = 1155
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 48 SKSIEDCFTDAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASY 96
++ +E F D M+S + L +K YI Y++L C + G SY
Sbjct: 46 NEGLESVFRDVFPMKSSNGEVALEYEKYYIEYNSLSFTEKECKRKGQSY 94
>sp|A8MQM7|RLF15_ARATH Protein RALF-like 15 OS=Arabidopsis thaliana GN=RALFL15 PE=3 SV=1
Length = 79
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 75 KYISYDTLRR--DMVPCDKPGASYYECHSGQANSYNRGCQIITRCAR 119
+YISY + + CDK A C AN Y RGC I RC R
Sbjct: 30 RYISYRGMNHGDHAIHCDK--AHPNTCKKQVANPYRRGCGTIERCRR 74
>sp|Q14393|GAS6_HUMAN Growth arrest-specific protein 6 OS=Homo sapiens GN=GAS6 PE=1 SV=2
Length = 721
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 90 DKPGASYYECHSG-QANSYNRGCQIITRCA 118
+KPG+ + CHSG + +S R CQ I CA
Sbjct: 173 NKPGSFHCSCHSGFELSSDGRTCQDIDECA 202
>sp|Q9SIU6|RLF14_ARATH Protein RALF-like 14 OS=Arabidopsis thaliana GN=RALFL14 PE=3 SV=1
Length = 101
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 65 SSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCAR 119
SSRR+L +YISY+ L++++ P ++ G + N Y R C + + C R
Sbjct: 51 SSRRIL-QASRYISYEALKKNL-PDNRRGEP-----DQRDNPYRRSCDVHSHCYR 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,635,152
Number of Sequences: 539616
Number of extensions: 1309816
Number of successful extensions: 3529
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3501
Number of HSP's gapped (non-prelim): 32
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)