Query 033245
Match_columns 123
No_of_seqs 147 out of 213
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 11:34:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03222 rapid alkalinization 100.0 4.6E-36 1E-40 221.5 4.1 90 25-119 25-119 (119)
2 PLN03221 rapid alkalinization 100.0 2.6E-35 5.6E-40 221.6 6.7 105 10-119 11-137 (137)
3 PF05498 RALF: Rapid ALkaliniz 99.9 2.9E-26 6.2E-31 154.3 4.6 62 57-119 4-66 (66)
4 PHA02513 V1 structural protein 34.2 35 0.00076 26.1 2.2 20 2-21 60-79 (135)
5 PF03908 Sec20: Sec20; InterP 32.2 41 0.00089 23.0 2.2 21 3-23 64-84 (92)
6 PHA00739 V3 structural protein 22.9 69 0.0015 23.2 2.0 17 6-22 2-18 (92)
7 PF06387 Calcyon: D1 dopamine 17.2 1E+02 0.0022 25.0 2.0 13 60-72 135-147 (186)
8 PF12662 cEGF: Complement Clr- 15.2 1.1E+02 0.0025 16.7 1.3 18 98-115 5-23 (24)
9 COG5029 CAL1 Prenyltransferase 14.8 86 0.0019 27.5 1.2 32 7-38 153-184 (342)
10 PF06404 PSK: Phytosulfokine p 14.4 1.6E+02 0.0034 20.4 2.2 49 12-77 2-74 (81)
No 1
>PLN03222 rapid alkalinization factor 23-like protein; Provisional
Probab=100.00 E-value=4.6e-36 Score=221.48 Aligned_cols=90 Identities=44% Similarity=0.870 Sum_probs=76.1
Q ss_pred ccccCccccccccccCCCCCCcccccchhhch----hhhhcchhhhhhhhhcccceeecCCCCCCCCCCCCCCCCCCCCC
Q 033245 25 VSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFT----DAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECH 100 (123)
Q Consensus 25 ~s~~~~~~~~~~~~~~~~~~~~C~Gsi~EC~~----ee~~m~se~~RR~L~~~~~yIsYgAL~~d~vpC~~~G~sY~nC~ 100 (123)
|...+..|..+|++ ....|+|+++||++ ||++||||++||+|+. ++||||+||++|++||+++|+|||||+
T Consensus 25 ~~~~~~~~~~~~~~----~~~~C~Gsi~EC~~~~~e~e~~mdSe~sRR~L~~-~rYISYgALrrd~vPCsrrG~SYynC~ 99 (119)
T PLN03222 25 VTSQSTGFSGDFMP----IDSKCNGTIAECSLSTAEEEFEMDSEINRRILAT-TKYISYGALRRNTVPCSRRGASYYNCR 99 (119)
T ss_pred hhcccccccccccC----CCCcCCCCHHHhhcccccchhccccHHHHHHHhh-cCeecHHHhcCCCCCCCCCCCCccccC
Confidence 33334456666763 33569999999985 3447999999999984 699999999999999999999999999
Q ss_pred CC-CCCCCCCCCcccccccC
Q 033245 101 SG-QANSYNRGCQIITRCAR 119 (123)
Q Consensus 101 p~-paNpYsRGCs~i~rCrr 119 (123)
++ |+|||+|||++||||||
T Consensus 100 ~~~~ANPY~RGCs~ITrCrR 119 (119)
T PLN03222 100 RGAQANPYSRGCSAITRCRR 119 (119)
T ss_pred CCCCCCCCCCCchhhccccC
Confidence 85 99999999999999997
No 2
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=100.00 E-value=2.6e-35 Score=221.62 Aligned_cols=105 Identities=40% Similarity=0.795 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHh---ccccccCccccccccccCCCCCCcccccchhhch---------------h---hhhcchhhhhh
Q 033245 10 RILFTAAVFLQIC---NGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFT---------------D---AELMESESSRR 68 (123)
Q Consensus 10 ~~~~~~~~~~~ic---~~~s~~~~~~~~~~~~~~~~~~~~C~Gsi~EC~~---------------e---e~~m~se~~RR 68 (123)
-+||+.+|+|.+= -+||..+-++..+|. +....|+|+++||++ | |++||||++||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR 86 (137)
T PLN03221 11 AAIFAILLILAVHFWSVAVSSQSIEFAGDFP----PFETECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRR 86 (137)
T ss_pred HHHHHHHHHHHHHHHhheeeccccccccccc----CCCCcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHH
Confidence 4677777766553 445554555555544 244579999999971 1 34799999999
Q ss_pred hhhcccceeecCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCcccccccC
Q 033245 69 VLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QANSYNRGCQIITRCAR 119 (123)
Q Consensus 69 ~L~~~~~yIsYgAL~~d~vpC~~~G~sY~nC~p~-paNpYsRGCs~i~rCrr 119 (123)
+|+ +++||||+||++|++||+++|+|||||.++ |+|||+|||++||||||
T Consensus 87 ~L~-~~rYISYgALrrd~vPCsrrG~SYynC~~~~pANPY~RGCs~ITRCrR 137 (137)
T PLN03221 87 ILA-TRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137 (137)
T ss_pred HHh-cCCccCHHHhccCCCCCCCCCCCccccCCCCCCCCCCCCcccccccCC
Confidence 997 478999999999999999999999999985 99999999999999997
No 3
>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development.
Probab=99.93 E-value=2.9e-26 Score=154.29 Aligned_cols=62 Identities=56% Similarity=1.071 Sum_probs=56.5
Q ss_pred hhhhcchhhhhhhhhcccceeecCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCcccccccC
Q 033245 57 DAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHS-GQANSYNRGCQIITRCAR 119 (123)
Q Consensus 57 ee~~m~se~~RR~L~~~~~yIsYgAL~~d~vpC~~~G~sY~nC~p-~paNpYsRGCs~i~rCrr 119 (123)
++++|+||++||+|+. ++||+|+||++|.+||.++|.+|++|.+ +|+|||+|||++|+||||
T Consensus 4 ~~~~~~s~~~~R~~a~-~~yIsYgaL~~~~~pc~~~g~~~~~c~~~~paNpY~RGC~~~~rCrr 66 (66)
T PF05498_consen 4 EEVVMESEASRRILAA-RRYISYGALRRDRVPCSPRGCSYYNCCPRQPANPYSRGCSKITRCRR 66 (66)
T ss_pred HHhhhhhHHHHHHHhc-CCeecchhccCCCCCCCcccCCCcccCCCCCCCCCCCCCCccccCCC
Confidence 4558999999999985 4999999999999999999999999854 599999999999999997
No 4
>PHA02513 V1 structural protein V1; Reviewed
Probab=34.15 E-value=35 Score=26.08 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.0
Q ss_pred CcchhhhHHHHHHHHHHHHH
Q 033245 2 SKTEVINVRILFTAAVFLQI 21 (123)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~i 21 (123)
.|.|-+|...|.+++.|+.|
T Consensus 60 tkge~~n~k~ii~L~IFIli 79 (135)
T PHA02513 60 TKGEGTNIGVLLGLFIFILI 79 (135)
T ss_pred cccccccHHHHHHHHHHHHH
Confidence 57899999999999888665
No 5
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=32.21 E-value=41 Score=23.01 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=15.5
Q ss_pred cchhhhHHHHHHHHHHHHHhc
Q 033245 3 KTEVINVRILFTAAVFLQICN 23 (123)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ic~ 23 (123)
|.+..+..+||++|+||..|-
T Consensus 64 r~~~~D~~li~~~~~~f~~~v 84 (92)
T PF03908_consen 64 RRDKTDRILIFFAFLFFLLVV 84 (92)
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 456677788888888877663
No 6
>PHA00739 V3 structural protein VP3
Probab=22.93 E-value=69 Score=23.19 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHh
Q 033245 6 VINVRILFTAAVFLQIC 22 (123)
Q Consensus 6 ~~~~~~~~~~~~~~~ic 22 (123)
-+|.+.|.+++.|+.|=
T Consensus 2 e~n~k~iifL~iFi~iG 18 (92)
T PHA00739 2 EINLKQIIFLFIFILIG 18 (92)
T ss_pred CccHHHHHHHHHHHHHH
Confidence 38999999988886663
No 7
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=17.23 E-value=1e+02 Score=24.99 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=11.1
Q ss_pred hcchhhhhhhhhc
Q 033245 60 LMESESSRRVLVM 72 (123)
Q Consensus 60 ~m~se~~RR~L~~ 72 (123)
+||.+.+||+|+.
T Consensus 135 eqdp~~~~~~~ta 147 (186)
T PF06387_consen 135 EQDPERRRSLYTA 147 (186)
T ss_pred ccCCCcccchhhh
Confidence 5899999999963
No 8
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=15.16 E-value=1.1e+02 Score=16.73 Aligned_cols=18 Identities=33% Similarity=0.676 Sum_probs=12.1
Q ss_pred CCCCC-CCCCCCCCCcccc
Q 033245 98 ECHSG-QANSYNRGCQIIT 115 (123)
Q Consensus 98 nC~p~-paNpYsRGCs~i~ 115 (123)
.|.++ .-++-.|.|.-|.
T Consensus 5 ~C~~Gy~l~~d~~~C~DId 23 (24)
T PF12662_consen 5 SCPPGYQLSPDGRSCEDID 23 (24)
T ss_pred eCCCCCcCCCCCCccccCC
Confidence 46666 6666668887664
No 9
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=14.82 E-value=86 Score=27.53 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHhccccccCccccccccc
Q 033245 7 INVRILFTAAVFLQICNGVSVLGSEIDVNYVM 38 (123)
Q Consensus 7 ~~~~~~~~~~~~~~ic~~~s~~~~~~~~~~~~ 38 (123)
+.+|++|.|+.+|.|+.-.+....+-.++|++
T Consensus 153 vDtr~~Y~al~ilsllg~~~~~~~e~~vdyl~ 184 (342)
T COG5029 153 VDTRFLYIALSILSLLGDLDKELFEGAVDYLK 184 (342)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 57899999999999997666555565677874
No 10
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=14.35 E-value=1.6e+02 Score=20.45 Aligned_cols=49 Identities=20% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccccccCccccccccccCCCCCC----------------------ccc--ccchhhchhhhhcchhhhh
Q 033245 12 LFTAAVFLQICNGVSVLGSEIDVNYVMPQSQSQR----------------------VCS--KSIEDCFTDAELMESESSR 67 (123)
Q Consensus 12 ~~~~~~~~~ic~~~s~~~~~~~~~~~~~~~~~~~----------------------~C~--Gsi~EC~~ee~~m~se~~R 67 (123)
|+++++++.+..|.-+.-..... .... .|. ..-+||+ .|
T Consensus 2 LLL~~~~~~~~~AARp~p~~~~~-------~~~~~~~~~~~~~~~~~~~~e~~~~E~Ceg~~~eEECL----------~R 64 (81)
T PF06404_consen 2 LLLLCSSSTSAAAARPLPASQGA-------EPVKSEEVQSAGVDEDEVVSELMGEESCEGGEGEEECL----------MR 64 (81)
T ss_pred chHHHHHhhHhhhcCCCCCcccc-------ccccccchhhcchhhhhhHHHhhhhccccCCCCchHHH----------HH
Q ss_pred hhhhccccee
Q 033245 68 RVLVMQKKYI 77 (123)
Q Consensus 68 R~L~~~~~yI 77 (123)
|+|+..--||
T Consensus 65 RtL~AHlDYI 74 (81)
T PF06404_consen 65 RTLAAHLDYI 74 (81)
T ss_pred HHHHHHhhhe
Done!