Query 033245
Match_columns 123
No_of_seqs 147 out of 213
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 19:12:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1as5_A Conotoxin Y-PIIIE; neur 35.4 35 0.0012 18.6 2.6 16 104-120 10-25 (26)
2 1kal_A Kalata B1; plant protei 11.4 1.2E+02 0.0041 16.9 1.6 12 99-112 17-28 (29)
3 2kmz_A Tumor necrosis factor r 8.6 1.4E+02 0.0046 18.8 1.2 28 85-113 5-42 (53)
4 3m03_A ORC6, origin recognitio 7.7 1.5E+02 0.0052 20.3 1.3 17 9-25 44-60 (95)
5 1cz6_A Protein (androctonin); 6.4 1.3E+02 0.0046 16.2 0.4 13 89-101 10-22 (26)
6 3arc_H Photosystem II reaction 6.1 5.5E+02 0.019 16.6 3.3 21 16-37 42-62 (65)
7 1jb0_I Photosystem 1 reaction 5.8 3.3E+02 0.011 15.9 1.9 11 11-21 24-34 (38)
8 4f43_A Protelomerase; recombin 5.8 2.8E+02 0.0097 23.0 2.1 18 6-23 261-278 (320)
9 3dve_B Voltage-dependent N-typ 5.5 2.9E+02 0.01 14.5 1.4 10 11-20 4-13 (23)
10 1e9t_A HITF, intestinal trefoi 5.3 5.3E+02 0.018 15.7 2.8 21 84-111 16-36 (59)
No 1
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=35.44 E-value=35 Score=18.59 Aligned_cols=16 Identities=31% Similarity=0.785 Sum_probs=10.1
Q ss_pred CCCCCCCCcccccccCC
Q 033245 104 ANSYNRGCQIITRCARG 120 (123)
Q Consensus 104 aNpYsRGCs~i~rCrr~ 120 (123)
+.|| .||+..--|++.
T Consensus 10 cr~~-pgc~~a~cc~~~ 25 (26)
T 1as5_A 10 CRRY-PGCSSASCCQRX 25 (26)
T ss_dssp CCCC-TTCTTCCCSCC-
T ss_pred cccC-CCcchhhhhccc
Confidence 3445 688877777764
No 2
>1kal_A Kalata B1; plant protein; NMR {Oldenlandia affinis} SCOP: g.3.3.1
Probab=11.36 E-value=1.2e+02 Score=16.90 Aligned_cols=12 Identities=33% Similarity=0.924 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCCc
Q 033245 99 CHSGQANSYNRGCQ 112 (123)
Q Consensus 99 C~p~paNpYsRGCs 112 (123)
|..+.. |+.||+
T Consensus 17 C~~GtC--yTpGCt 28 (29)
T 1kal_A 17 CVGGTC--NTPGCT 28 (29)
T ss_dssp CTTSCC--SCTTCB
T ss_pred ccCcee--cCCCcc
Confidence 544333 888986
No 3
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=8.58 E-value=1.4e+02 Score=18.79 Aligned_cols=28 Identities=29% Similarity=0.697 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCC----CCCC---CCCCCCC---CCCcc
Q 033245 85 DMVPCDKPGASYY----ECHS---GQANSYN---RGCQI 113 (123)
Q Consensus 85 d~vpC~~~G~sY~----nC~p---~paNpYs---RGCs~ 113 (123)
...||. +|.||. .|-. -++.||+ -||++
T Consensus 5 ~~~pC~-~GsswS~DLdKCmdcs~C~~~p~SDFC~gcs~ 42 (53)
T 2kmz_A 5 GTAPCS-RGSSWSADLDKCMDCASCRARPHSDFCLGCAA 42 (53)
T ss_dssp SCCSSC-SSCBCCTTTTCCBCSTTCSSCCCCHHHHHHSS
T ss_pred CcCcCC-CCcccchhhhhhhccccCCCCccccccccccc
Confidence 356786 577775 2322 2778887 45543
No 4
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=7.69 E-value=1.5e+02 Score=20.27 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhccc
Q 033245 9 VRILFTAAVFLQICNGV 25 (123)
Q Consensus 9 ~~~~~~~~~~~~ic~~~ 25 (123)
+|-.|++.+|+..|+-.
T Consensus 44 s~P~f~aaA~~~acr~~ 60 (95)
T 3m03_A 44 SRPLFTSAALLSACKIL 60 (95)
T ss_dssp TSHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHH
Confidence 57789999999999733
No 5
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=6.43 E-value=1.3e+02 Score=16.16 Aligned_cols=13 Identities=38% Similarity=1.257 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCCC
Q 033245 89 CDKPGASYYECHS 101 (123)
Q Consensus 89 C~~~G~sY~nC~p 101 (123)
|.++|--||.|..
T Consensus 10 crrrggcyykctn 22 (26)
T 1cz6_A 10 CRRRGGCYYKCTN 22 (26)
T ss_dssp CCSSSCCEEEECC
T ss_pred HHhcCceEEEccC
Confidence 7777777887743
No 6
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=6.14 E-value=5.5e+02 Score=16.59 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=11.6
Q ss_pred HHHHHHhccccccCcccccccc
Q 033245 16 AVFLQICNGVSVLGSEIDVNYV 37 (123)
Q Consensus 16 ~~~~~ic~~~s~~~~~~~~~~~ 37 (123)
+.+|.|.++.- .-..++++|.
T Consensus 42 ~iiLeIYNsSv-lLdgi~v~w~ 62 (65)
T 3arc_H 42 LIILEIYNSTL-ILDGVNVSWK 62 (65)
T ss_dssp HHHHHHHTTSS-CCTTCCCSTT
T ss_pred HHHHHHhCcce-eecCcceeec
Confidence 33488887432 2234567675
No 7
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=5.79 E-value=3.3e+02 Score=15.88 Aligned_cols=11 Identities=27% Similarity=0.458 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH
Q 033245 11 ILFTAAVFLQI 21 (123)
Q Consensus 11 ~~~~~~~~~~i 21 (123)
++..+++|+.|
T Consensus 24 ai~Mallf~yI 34 (38)
T 1jb0_I 24 TVVMGLLFLYI 34 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 56667777776
No 8
>4f43_A Protelomerase; recombination-DNA complex; HET: DNA; 2.35A {Agrobacterium tumefaciens} PDB: 4f41_A*
Probab=5.77 E-value=2.8e+02 Score=22.98 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHhc
Q 033245 6 VINVRILFTAAVFLQICN 23 (123)
Q Consensus 6 ~~~~~~~~~~~~~~~ic~ 23 (123)
+-+.|+||.+|++...|.
T Consensus 261 ~hdlRAIYa~IA~~~F~p 278 (320)
T 4f43_A 261 PYGLRHLYAEVAYHNFAP 278 (320)
T ss_dssp TTHHHHHHHHHHHHHHCC
T ss_pred chhHHHHHHHHHHHHHcC
Confidence 568999999999999996
No 9
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=5.52 E-value=2.9e+02 Score=14.53 Aligned_cols=10 Identities=10% Similarity=0.404 Sum_probs=6.9
Q ss_pred HHHHHHHHHH
Q 033245 11 ILFTAAVFLQ 20 (123)
Q Consensus 11 ~~~~~~~~~~ 20 (123)
-||++++++-
T Consensus 4 KiYAallI~d 13 (23)
T 3dve_B 4 KVYAALMIFD 13 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3788887764
No 10
>1e9t_A HITF, intestinal trefoil factor; solution structure, trefoil domain, spectroscopy, cell motility factor; NMR {Homo sapiens} SCOP: g.16.1.1 PDB: 1pe3_1
Probab=5.33 E-value=5.3e+02 Score=15.71 Aligned_cols=21 Identities=43% Similarity=0.960 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 033245 84 RDMVPCDKPGASYYECHSGQANSYNRGC 111 (123)
Q Consensus 84 ~d~vpC~~~G~sY~nC~p~paNpYsRGC 111 (123)
.+++.|..+|.+-..|.. |||
T Consensus 16 ~~R~dCG~pgit~~~C~~-------rGC 36 (59)
T 1e9t_A 16 KDRVDCGYPHVTPKECNN-------RGC 36 (59)
T ss_dssp TTCCCCCCSSCCTTTTTT-------SSS
T ss_pred hhcccCCCCCCCHHHHhh-------CcC
Done!