Query 033245
Match_columns 123
No_of_seqs 147 out of 213
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 19:13:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033245.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033245hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omca_ g.3.6.1 (A:) Conotoxin 44.2 4 0.00029 21.2 1.0 19 89-111 8-26 (27)
2 d1rzhh2 f.23.10.1 (H:11-35) Ph 10.1 81 0.0059 15.8 1.9 12 10-21 10-21 (26)
3 d1e9ta_ g.16.1.1 (A:) Intestin 9.7 1.1E+02 0.0084 17.5 2.8 16 85-100 17-32 (59)
4 d1m56d_ f.23.8.1 (D:) Bacteria 5.8 1.7E+02 0.013 16.1 2.1 12 12-23 30-41 (42)
5 d2v5za2 d.16.1.5 (A:290-401) M 5.7 91 0.0066 17.9 0.9 11 103-113 100-110 (112)
6 d1qled_ f.23.8.1 (D:) Bacteria 5.6 1.7E+02 0.012 16.2 2.0 12 12-23 31-42 (43)
7 d2a5yb1 a.4.5.80 (B:386-543) C 5.4 63 0.0046 22.1 -0.0 24 46-69 26-49 (158)
8 d2dw4a3 d.16.1.5 (A:655-763) L 5.3 1.2E+02 0.0085 17.1 1.2 11 103-113 98-108 (109)
9 d1ozbi_ g.74.1.1 (I:) Preprote 5.1 1.4E+02 0.01 14.9 1.3 17 85-102 5-21 (26)
10 d2p2ea1 b.124.1.1 (A:3-120) Pu 4.2 1.1E+02 0.0077 19.7 0.4 10 103-112 31-40 (118)
No 1
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=44.16 E-value=4 Score=21.19 Aligned_cols=19 Identities=37% Similarity=1.017 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 033245 89 CDKPGASYYECHSGQANSYNRGC 111 (123)
Q Consensus 89 C~~~G~sY~nC~p~paNpYsRGC 111 (123)
|++. | |||. +.+|||+.-|
T Consensus 8 cspt--s-yncc-rscnpytkrc 26 (27)
T d1omca_ 8 CSPT--S-YNCC-RSCNPYTKRC 26 (27)
T ss_dssp CCTT--T-TCBS-SCEETTTTEE
T ss_pred CCCc--c-cchh-cccCcccccc
Confidence 7654 3 5564 4899998655
No 2
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.11 E-value=81 Score=15.84 Aligned_cols=12 Identities=17% Similarity=0.287 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q 033245 10 RILFTAAVFLQI 21 (123)
Q Consensus 10 ~~~~~~~~~~~i 21 (123)
-++|||+++.-+
T Consensus 10 fw~ffalli~yl 21 (26)
T d1rzhh2 10 FWIFLAGLIYYL 21 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356777766543
No 3
>d1e9ta_ g.16.1.1 (A:) Intestinal trefoil factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.69 E-value=1.1e+02 Score=17.47 Aligned_cols=16 Identities=38% Similarity=0.710 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCCCCC
Q 033245 85 DMVPCDKPGASYYECH 100 (123)
Q Consensus 85 d~vpC~~~G~sY~nC~ 100 (123)
+++.|.+.|.+-..|.
T Consensus 17 ~R~dCg~~git~~~C~ 32 (59)
T d1e9ta_ 17 DRVDCGYPHVTPKECN 32 (59)
T ss_dssp TCCCCCCSSCCTTTTT
T ss_pred ccccCCCCCCCHHHHh
Confidence 4566766665555554
No 4
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.80 E-value=1.7e+02 Score=16.08 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhc
Q 033245 12 LFTAAVFLQICN 23 (123)
Q Consensus 12 ~~~~~~~~~ic~ 23 (123)
+.+.++||.|-+
T Consensus 30 ~i~~liflAi~n 41 (42)
T d1m56d_ 30 IVAALIFLALAN 41 (42)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 334444555543
No 5
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.69 E-value=91 Score=17.93 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=9.1
Q ss_pred CCCCCCCCCcc
Q 033245 103 QANSYNRGCQI 113 (123)
Q Consensus 103 paNpYsRGCs~ 113 (123)
..+||+||+-.
T Consensus 100 ~~dp~~~GsYs 110 (112)
T d2v5za2 100 CEEQYSGGCYT 110 (112)
T ss_dssp GGCTTTCSSSC
T ss_pred CCCCccCcccc
Confidence 68999999854
No 6
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=5.60 E-value=1.7e+02 Score=16.17 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhc
Q 033245 12 LFTAAVFLQICN 23 (123)
Q Consensus 12 ~~~~~~~~~ic~ 23 (123)
+.+.++||.|-+
T Consensus 31 ~i~~liflAi~n 42 (43)
T d1qled_ 31 SIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 334444555543
No 7
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=5.42 E-value=63 Score=22.10 Aligned_cols=24 Identities=21% Similarity=0.551 Sum_probs=12.5
Q ss_pred cccccchhhchhhhhcchhhhhhh
Q 033245 46 VCSKSIEDCFTDAELMESESSRRV 69 (123)
Q Consensus 46 ~C~Gsi~EC~~ee~~m~se~~RR~ 69 (123)
.|--.+.-|..||+.+|.|+..|+
T Consensus 26 scvipvdicsnee~qlddevadrl 49 (158)
T d2a5yb1 26 SCVIPVDICSNEEEQLDDEVADRL 49 (158)
T ss_dssp HHHSCC-------CCCTHHHHHHH
T ss_pred EEeeeeeecCChHhhhhHHHHHHH
Confidence 566677788888888888886665
No 8
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.28 E-value=1.2e+02 Score=17.12 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=9.1
Q ss_pred CCCCCCCCCcc
Q 033245 103 QANSYNRGCQI 113 (123)
Q Consensus 103 paNpYsRGCs~ 113 (123)
..+||+||+-.
T Consensus 98 ~~dp~~~GsYS 108 (109)
T d2dw4a3 98 RADPWARGSYS 108 (109)
T ss_dssp TTCTTTSSSCE
T ss_pred CCCCccCEecC
Confidence 78999999853
No 9
>d1ozbi_ g.74.1.1 (I:) Preprotein translocase SecA C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=5.14 E-value=1.4e+02 Score=14.92 Aligned_cols=17 Identities=35% Similarity=0.991 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 033245 85 DMVPCDKPGASYYECHSG 102 (123)
Q Consensus 85 d~vpC~~~G~sY~nC~p~ 102 (123)
+.-||+ +|.-|..|...
T Consensus 5 ~~CpCg-SgkkyK~C~G~ 21 (26)
T d1ozbi_ 5 EPCPCG-SGKKYKHCHGS 21 (26)
T ss_dssp SBCTTT-CSSBGGGTTTC
T ss_pred CcCCCC-CCccHHHcCCc
Confidence 344565 67777777643
No 10
>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}
Probab=4.20 E-value=1.1e+02 Score=19.68 Aligned_cols=10 Identities=0% Similarity=-0.084 Sum_probs=7.5
Q ss_pred CCCCCCCCCc
Q 033245 103 QANSYNRGCQ 112 (123)
Q Consensus 103 paNpYsRGCs 112 (123)
-.|||+.||.
T Consensus 31 G~g~yS~ggg 40 (118)
T d2p2ea1 31 GVGALSKVGV 40 (118)
T ss_dssp SCSGGGGSSC
T ss_pred CCCccccCCc
Confidence 4678888885
Done!