BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033246
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2A33|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2Q4O|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
pdb|2Q4O|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
Length = 215
Score = 186 bits (471), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 85/110 (77%), Positives = 98/110 (89%)
Query: 2 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFID 61
HQRKAE A++SD FIALPGGYGTLEELLEVITWAQLGIHDKPVGL+NVDGYYNSLL+FID
Sbjct: 100 HQRKAEXAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFID 159
Query: 62 KAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQV 111
KAV++GFISP+ R I+VSAP AKELV+KLEEY P H+ V K+ WE E++
Sbjct: 160 KAVEEGFISPTAREIIVSAPTAKELVKKLEEYAPCHERVATKLCWEXERI 209
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|1YDH|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|2Q4D|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
pdb|2Q4D|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
Length = 216
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 82/110 (74%)
Query: 2 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFID 61
H+RKA A+ ++ FIALPGGYGT EELLE ITW+QLGIH K VGL+NVDGYYN+LL D
Sbjct: 96 HERKAAXAQEAEAFIALPGGYGTXEELLEXITWSQLGIHKKTVGLLNVDGYYNNLLALFD 155
Query: 62 KAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQV 111
V++GFI P R+I+VSAP AKEL +K EEY P H V + W+ E++
Sbjct: 156 TGVEEGFIKPGARNIVVSAPTAKELXEKXEEYTPSHXHVASHESWKVEEL 205
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|B Chain B, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|C Chain C, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|D Chain D, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|E Chain E, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|F Chain F, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|G Chain G, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|H Chain H, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
Length = 191
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 61/92 (66%)
Query: 2 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFID 61
H+RKA+ + +D FI+ PGG+GT EEL EV+ WAQ+GIH KP+GL NV+GY+ +
Sbjct: 88 HERKAKXSELADGFISXPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPXXKXVK 147
Query: 62 KAVDDGFISPSQRSILVSAPNAKELVQKLEEY 93
++ +GF + S ++ S+ EL+++ + Y
Sbjct: 148 YSIQEGFSNESHLKLIHSSSRPDELIEQXQNY 179
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
pdb|3QUA|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
Length = 199
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%)
Query: 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFI 60
M +RK EM SD FIALPGG GTLEE E T LG+HDKP+ L++ G+Y+ LL ++
Sbjct: 107 MRERKREMEHRSDAFIALPGGIGTLEEFFEAWTAGYLGMHDKPLILLDPFGHYDGLLTWL 166
Query: 61 DKAVDDGFISPSQRSILVSAPNAKELVQ 88
V G++S LV N + ++
Sbjct: 167 RGLVPTGYVSQRAMDSLVVVDNVEAALE 194
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|C Chain C, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|D Chain D, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|E Chain E, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|F Chain F, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|G Chain G, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|H Chain H, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
Length = 189
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFI 60
M +RK M ++ FI LPGG GTL+ELL+V T LG+HDK + +++ G+++ L ++
Sbjct: 98 MWERKQVMEDRANAFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWL 157
Query: 61 DKAVDDGFISPSQRSILVSAPNAKELVQ 88
+ D G++S + L+ N + +Q
Sbjct: 158 SELADTGYVSRTAMERLIVVDNLDDALQ 185
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
Length = 217
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 4 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLINVDGYYNSLLNFIDK 62
RK R + F+ LPGG+GTL+EL EV+ Q +H PV L++ GY+ L+ ++
Sbjct: 124 RKVLFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLD-RGYWEGLVRWLAF 182
Query: 63 AVDDGFISPSQRSILVSAPNAKELVQKLEEYVP 95
D + P + +E+VQ L+ P
Sbjct: 183 LRDQKAVGPEDLQLFRLTDEPEEVVQALKAEAP 215
>pdb|1WEH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
pdb|1WEH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
Length = 171
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN 58
+ QR + ++ALPGG GTL EL V+ W L + + VD Y+ LL
Sbjct: 87 LPQRIGRLLDLGAGYLALPGGVGTLAEL--VLAWNLLYLRRGVGRPLAVDPYWLGLLK 142
>pdb|2PMB|A Chain A, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|B Chain B, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|C Chain C, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|D Chain D, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|3GH1|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|C Chain C, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|D Chain D, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
Length = 462
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 49/131 (37%), Gaps = 23/131 (17%)
Query: 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKP-----------VGLINV 49
+ +R R + I PGG GT EELL + LGI P G
Sbjct: 237 IEKRLEAFVRXAHGIIIFPGGPGTAEELLYI-----LGIXXHPENADQPXPIVLTGPKQS 291
Query: 50 DGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAE 109
+ Y+ SL DK + D +++ ++ N E + PL V K + +
Sbjct: 292 EAYFRSL----DKFITDTLGEAARKHYSIAIDNPAEAARIXSNAXPL---VRQHRKDKED 344
Query: 110 QVELNTSLKTE 120
N SLK E
Sbjct: 345 AYSFNWSLKIE 355
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 35 AQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP---NAKELVQKL- 90
AQ D P G + VD S F DK +G I + +++SAP AK +V +
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVN 149
Query: 91 -EEYVPLHDGVVA 102
EY P VV+
Sbjct: 150 QHEYSPASHHVVS 162
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 35 AQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP---NAKELVQKL- 90
AQ D P G + VD S F DK +G I + +++SAP AK +V +
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVN 149
Query: 91 -EEYVPLHDGVVA 102
EY P VV+
Sbjct: 150 QHEYSPASHHVVS 162
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 35 AQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP---NAKELVQKL- 90
AQ D P G + V+ S F KA +G + R +++SAP AK LV +
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVN 149
Query: 91 -EEYVPLHDGVVA 102
EY P VV+
Sbjct: 150 HHEYNPSEHHVVS 162
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 35 AQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP---NAKELVQKL- 90
AQ D P G + V+ S F KA +G + R +++SAP AK LV +
Sbjct: 90 AQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVN 149
Query: 91 -EEYVPLHDGVVA 102
EY P VV+
Sbjct: 150 HHEYNPSEHHVVS 162
>pdb|3ZV2|A Chain A, Human Protein-Tyrosine Phosphatase 1b C215a, S216a Mutant
Length = 320
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
Query: 79 SA 80
A
Sbjct: 214 HA 215
>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
Length = 298
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
Query: 79 SA 80
A
Sbjct: 214 HA 215
>pdb|3RR1|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j
pdb|3RR1|B Chain B, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j
pdb|3RRA|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j With Magnesium Bound
pdb|3RRA|B Chain B, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j With Magnesium Bound
Length = 405
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 78 VSAPNAKELVQKLEEYVPL 96
VSAP AK L+++LE Y PL
Sbjct: 189 VSAPMAKVLIKELEPYRPL 207
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 61 DKAVD--DGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWE 107
DKA+D D S + + PN KEL QKL+E D V ++E
Sbjct: 372 DKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFE 420
>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Inhibitor
[(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
Length = 354
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 198 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 247
>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
pdb|1PTY|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Phosphotyrosine Molecules
Length = 321
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
Query: 79 SA 80
+
Sbjct: 214 HS 215
>pdb|1AAX|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Bis(Para-Phosphophenyl)methane (Bppm)
Molecules
Length = 321
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
Query: 79 SA 80
+
Sbjct: 214 HS 215
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 61 DKAVD--DGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWE 107
DKA+D D S + + PN KEL QKL+E D V ++E
Sbjct: 372 DKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFE 420
>pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Hexa-Peptide
(Dadepyl-Nh2)
pdb|1PTT|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Tetra-Peptide
(Ac-Depyl-Nh2)
Length = 321
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
Query: 79 SA 80
+
Sbjct: 214 HS 215
>pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine
Length = 321
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
Query: 79 SA 80
+
Sbjct: 214 HS 215
>pdb|1A5Y|A Chain A, Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate
Intermediate
Length = 330
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
Length = 290
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 171 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 220
>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
Length = 300
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 166 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 215
>pdb|1OEO|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To Sulfonic
Acid
pdb|1OET|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEU|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEV|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
Length = 321
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|3EU0|A Chain A, Crystal Structure Of The S-Nitrosylated Cys215 Of Ptp1b
Length = 327
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 170 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 219
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
Length = 298
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
Length = 304
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 170 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 219
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|3A5K|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 304
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 170 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 219
>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
Length = 310
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 15/62 (24%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 176 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 225
Query: 79 SA 80
+
Sbjct: 226 HS 227
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 163 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 212
>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene
Inhibitor
pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
Inhibitor.
pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
Inhibitor
pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
Length = 299
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
(R47v, D48n) Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 327
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 170 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 219
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-dioxo-1h-
Benzo[d]isothiazol-3-yloxymethyl)-2-(oxalyl-amino)-4,7-
Dihydro-5h-thieno[2,3-c]pyran-3-carboxylic Acid
Length = 321
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 12 Using A Linked-Fragment Strategy
pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 23 Using A Linked-fragment Strategy
pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 5 Using A Linked-fragment Strategy
pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine
Phosphatase 1b Using A Second Phosphotyrosine Binding
Site, Complexed With Compound 19.
pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 17
pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 8b
pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
Sulfenyl-Amide Bond
pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
Potent And Selective Bidentate Inhibitor Compound 2
pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b
Targeting The Second Phosphotyrosine Site
pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase
1b Inhibitor Using A Linked Fragment Strategy And A
Malonate Head On The First Site
pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
Ptp1b Inhibitors
pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
Protein Tyrosine Phosphatase 1b
pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Compound Lzp-6
pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Inhibitor Lzp-25
pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo First Catalytic Step
pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo Second Catalytic Step
Length = 321
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 176 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 225
>pdb|1NWL|A Chain A, Crystal Structure Of The Ptp1b Complexed With
Sp7343-Sp7964, A Ptyr Mimetic
pdb|1NWE|A Chain A, Ptp1b R47c Modified At C47 With N-[4-(2-{2-[3-(2-Bromo-
Acetylamino)-Propionylamino]-3-Hydroxy-Propionylamino}-
Ethyl)-Phenyl]-Oxalamic Acid
Length = 298
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Acid
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-
Thieno[2,3-C]pyridine-3-Carboxylic Acid
Length = 298
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
Length = 299
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
Length = 302
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 168 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 217
>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
Length = 298
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 164 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 213
>pdb|1Q6J|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|1Q6M|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 3
pdb|1Q6N|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6N|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6P|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6P|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6S|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6S|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6T|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|1Q6T|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|2FJN|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJN|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 176 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 225
>pdb|2FJM|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJM|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 176 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 225
>pdb|1PA1|A Chain A, Crystal Structure Of The C215d Mutant Of Protein Tyrosine
Phosphatase 1b
Length = 310
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 24 TLEELLEVI-----TWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78
T +E E++ TW G+ + P S LNF+ K + G +SP ++V
Sbjct: 176 TTQETREILHFHYTTWPDFGVPESPA----------SFLNFLFKVRESGSLSPEHGPVVV 225
>pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
pdb|3EMP|B Chain B, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
pdb|3EMP|C Chain C, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
pdb|3EMP|D Chain D, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
pdb|3EMP|E Chain E, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
Length = 186
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 82 NAKELVQKLE--EYVPLHDGVVAKVKWEAEQVELNTSL 117
+A +L++K++ +YV H G V+ KW+ + L SL
Sbjct: 143 DASDLLRKIKAAQYVAAHPGEVSPAKWKEGEATLAPSL 180
>pdb|2VZW|A Chain A, X-Ray Structure Of The Heme-Bound Gaf Domain Of Sensory
Histidine Kinase Dost Of Mycobacterium Tuberculosis
pdb|2VZW|B Chain B, X-Ray Structure Of The Heme-Bound Gaf Domain Of Sensory
Histidine Kinase Dost Of Mycobacterium Tuberculosis
Length = 149
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 23 GTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 82
G L+ L I + D G + V GY + L+ F+ + +D+ R ++ S P
Sbjct: 1 GKLDATLRAIVHTAAELVDARYGALGVRGYDHRLVEFVYEGIDE-----ETRHLIGSLPE 55
Query: 83 AKELVQKL-EEYVPL 96
+ ++ L EE P+
Sbjct: 56 GRGVLGALIEEPKPI 70
>pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF0|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF0|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF0|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF0|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 82 NAKELVQKLE--EYVPLHDGVVAKVKWEAEQVELNTSL 117
+A +L++K++ +YV H G V KW+ + L SL
Sbjct: 143 DASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSL 180
>pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEP|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEP|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEP|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEP|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 82 NAKELVQKLE--EYVPLHDGVVAKVKWEAEQVELNTSL 117
+A +L++K++ +YV H G V KW+ + L SL
Sbjct: 143 DASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSL 180
>pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEX|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEX|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEX|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEX|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 82 NAKELVQKLE--EYVPLHDGVVAKVKWEAEQVELNTSL 117
+A +L++K++ +YV H G V KW+ + L SL
Sbjct: 143 DASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSL 180
>pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|F Chain F, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|G Chain G, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|H Chain H, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|I Chain I, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|J Chain J, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 82 NAKELVQKLE--EYVPLHDGVVAKVKWEAEQVELNTSL 117
+A +L++K++ +YV H G V KW+ + L SL
Sbjct: 143 DASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSL 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,840,284
Number of Sequences: 62578
Number of extensions: 153096
Number of successful extensions: 455
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 61
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)