Query 033246
Match_columns 123
No_of_seqs 108 out of 1027
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 11:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 5.6E-34 1.2E-38 215.9 10.8 93 1-93 86-178 (178)
2 PF03641 Lysine_decarbox: Poss 100.0 6.3E-34 1.4E-38 205.8 10.1 90 1-90 43-133 (133)
3 COG1611 Predicted Rossmann fol 99.9 4.2E-26 9.1E-31 176.4 9.3 96 1-96 100-198 (205)
4 TIGR00725 conserved hypothetic 99.9 3.3E-23 7.2E-28 154.3 9.9 78 1-90 81-158 (159)
5 PF05014 Nuc_deoxyrib_tr: Nucl 95.9 0.025 5.3E-07 39.1 5.4 42 3-50 53-98 (113)
6 PF13528 Glyco_trans_1_3: Glyc 94.6 0.38 8.2E-06 37.7 9.2 69 5-92 244-316 (318)
7 TIGR00732 dprA DNA protecting 94.6 0.25 5.4E-06 38.6 8.0 72 2-89 146-219 (220)
8 PF04101 Glyco_tran_28_C: Glyc 91.6 0.98 2.1E-05 32.4 6.7 55 5-69 66-121 (167)
9 PRK13608 diacylglycerol glucos 88.9 2.9 6.4E-05 34.4 8.1 68 6-93 268-335 (391)
10 PF11071 DUF2872: Protein of u 87.5 3.8 8.3E-05 30.3 7.0 73 3-91 64-137 (141)
11 PLN02605 monogalactosyldiacylg 86.6 4 8.6E-05 33.3 7.5 70 5-94 276-345 (382)
12 TIGR03646 YtoQ_fam YtoQ family 84.2 5.7 0.00012 29.5 6.6 73 3-91 67-140 (144)
13 cd03784 GT1_Gtf_like This fami 84.1 5.4 0.00012 32.3 7.2 70 7-93 300-369 (401)
14 PRK13609 diacylglycerol glucos 84.0 7.6 0.00016 31.3 8.0 69 6-94 268-336 (380)
15 TIGR00661 MJ1255 conserved hyp 83.9 8.2 0.00018 30.7 8.1 54 5-69 241-294 (321)
16 TIGR01133 murG undecaprenyldip 83.6 9.8 0.00021 29.8 8.3 73 6-94 245-319 (348)
17 CHL00200 trpA tryptophan synth 80.4 11 0.00023 30.3 7.5 45 18-67 70-119 (263)
18 cd03785 GT1_MurG MurG is an N- 80.1 16 0.00034 28.6 8.3 73 6-94 247-322 (350)
19 PF01182 Glucosamine_iso: Gluc 79.6 8.5 0.00018 29.1 6.4 85 7-92 16-109 (199)
20 TIGR01426 MGT glycosyltransfer 79.4 4.1 9E-05 33.1 4.9 71 7-94 287-357 (392)
21 COG3613 Nucleoside 2-deoxyribo 78.7 12 0.00026 28.7 6.8 54 7-66 64-125 (172)
22 PRK02645 ppnK inorganic polyph 76.8 5.4 0.00012 32.5 4.9 52 11-68 57-117 (305)
23 PRK00726 murG undecaprenyldiph 76.7 28 0.0006 27.6 8.9 73 6-95 247-323 (357)
24 PRK00025 lpxB lipid-A-disaccha 76.7 14 0.0003 29.6 7.2 32 6-48 256-287 (380)
25 COG1819 Glycosyl transferases, 75.2 8.4 0.00018 32.5 5.7 48 7-67 296-343 (406)
26 smart00046 DAGKc Diacylglycero 74.4 6.4 0.00014 27.5 4.2 35 15-49 52-86 (124)
27 TIGR03590 PseG pseudaminic aci 74.4 7.3 0.00016 30.8 4.9 35 5-50 235-269 (279)
28 cd03786 GT1_UDP-GlcNAc_2-Epime 72.0 24 0.00052 27.8 7.4 65 6-95 272-336 (363)
29 PF05159 Capsule_synth: Capsul 71.5 5.6 0.00012 31.0 3.6 38 6-55 194-231 (269)
30 TIGR00421 ubiX_pad polyprenyl 71.2 13 0.00029 28.1 5.5 81 11-92 75-165 (181)
31 TIGR02113 coaC_strep phosphopa 71.0 24 0.00052 26.5 6.8 84 10-93 75-176 (177)
32 PRK12446 undecaprenyldiphospho 70.4 25 0.00054 28.8 7.3 73 6-93 247-322 (352)
33 cd01400 6PGL 6PGL: 6-Phosphogl 70.2 30 0.00064 26.5 7.4 44 8-53 19-62 (219)
34 PRK05749 3-deoxy-D-manno-octul 69.7 24 0.00053 28.9 7.2 70 6-94 314-386 (425)
35 PRK00696 sucC succinyl-CoA syn 69.0 41 0.00089 27.9 8.4 71 12-93 311-384 (388)
36 PF06258 Mito_fiss_Elm1: Mitoc 68.5 34 0.00074 28.0 7.7 57 8-73 225-281 (311)
37 COG0159 TrpA Tryptophan syntha 68.3 32 0.0007 27.9 7.4 60 24-92 77-141 (265)
38 cd03795 GT1_like_4 This family 68.0 41 0.0009 25.7 7.8 71 4-94 256-330 (357)
39 PRK06029 3-octaprenyl-4-hydrox 67.4 15 0.00032 28.0 5.1 81 11-92 78-168 (185)
40 PF01320 Colicin_Pyocin: Colic 67.3 5.4 0.00012 27.1 2.4 64 24-98 11-79 (85)
41 PLN02591 tryptophan synthase 67.2 38 0.00081 27.0 7.5 40 24-67 62-106 (250)
42 PF11834 DUF3354: Domain of un 67.0 14 0.0003 24.1 4.2 33 13-51 19-51 (69)
43 cd03804 GT1_wbaZ_like This fam 66.1 33 0.00072 26.9 7.0 71 4-95 254-325 (351)
44 PF00781 DAGK_cat: Diacylglyce 64.4 8.1 0.00018 26.8 2.9 40 9-49 49-90 (130)
45 PRK07313 phosphopantothenoylcy 64.3 50 0.0011 24.9 7.4 86 9-94 75-178 (182)
46 TIGR00519 asnASE_I L-asparagin 63.9 16 0.00035 30.2 5.0 49 11-62 77-130 (336)
47 PRK11780 isoprenoid biosynthes 63.8 8 0.00017 30.1 3.0 14 15-28 88-101 (217)
48 cd00411 Asparaginase Asparagin 63.5 15 0.00034 30.0 4.8 49 11-62 78-131 (323)
49 TIGR00215 lpxB lipid-A-disacch 63.5 33 0.00071 28.4 6.8 74 8-94 264-345 (385)
50 cd06259 YdcF-like YdcF-like. Y 62.8 49 0.0011 23.1 6.8 20 13-32 1-30 (150)
51 PF01965 DJ-1_PfpI: DJ-1/PfpI 62.6 7 0.00015 27.7 2.4 36 15-50 40-80 (147)
52 cd03794 GT1_wbuB_like This fam 61.4 39 0.00084 25.5 6.4 72 4-94 287-363 (394)
53 KOG4175 Tryptophan synthase al 60.8 36 0.00077 27.4 6.2 33 24-59 78-110 (268)
54 PF03492 Methyltransf_7: SAM d 60.5 11 0.00025 31.0 3.5 43 51-93 198-243 (334)
55 TIGR03449 mycothiol_MshA UDP-N 60.2 47 0.001 26.6 7.0 39 4-50 295-335 (405)
56 cd03808 GT1_cap1E_like This fa 59.9 41 0.0009 25.0 6.3 69 7-94 259-327 (359)
57 cd03823 GT1_ExpE7_like This fa 59.5 48 0.001 25.0 6.6 70 5-95 256-328 (359)
58 TIGR01198 pgl 6-phosphoglucono 59.3 80 0.0017 24.4 8.0 42 9-53 25-66 (233)
59 PF02481 DNA_processg_A: DNA r 59.2 41 0.00088 25.9 6.2 59 2-67 146-206 (212)
60 TIGR03088 stp2 sugar transfera 58.4 36 0.00079 26.9 6.0 68 6-94 267-336 (374)
61 cd03822 GT1_ecORF704_like This 58.3 37 0.00081 25.8 5.9 70 4-95 260-333 (366)
62 PRK15484 lipopolysaccharide 1, 58.0 70 0.0015 26.0 7.8 69 5-94 270-342 (380)
63 COG0163 UbiX 3-polyprenyl-4-hy 57.8 30 0.00064 27.0 5.2 81 12-92 81-170 (191)
64 COG0707 MurG UDP-N-acetylgluco 57.5 71 0.0015 26.7 7.8 73 6-94 247-322 (357)
65 cd03799 GT1_amsK_like This is 56.6 55 0.0012 25.0 6.6 72 4-94 248-325 (355)
66 TIGR01016 sucCoAbeta succinyl- 56.6 74 0.0016 26.4 7.8 70 12-92 311-383 (386)
67 PHA03359 UL17 tegument protein 56.1 5.8 0.00012 36.3 1.2 21 12-32 648-668 (686)
68 cd07025 Peptidase_S66 LD-Carbo 56.1 14 0.00031 29.5 3.3 34 11-45 62-95 (282)
69 PF14359 DUF4406: Domain of un 55.3 23 0.00051 23.9 3.9 28 6-33 54-84 (92)
70 TIGR02153 gatD_arch glutamyl-t 55.3 27 0.00059 29.8 5.1 49 12-62 140-193 (404)
71 cd04951 GT1_WbdM_like This fam 55.2 48 0.001 25.4 6.1 68 6-94 257-324 (360)
72 cd03825 GT1_wcfI_like This fam 55.0 75 0.0016 24.3 7.2 69 5-94 258-328 (365)
73 PF04007 DUF354: Protein of un 55.0 80 0.0017 26.2 7.7 63 8-93 245-307 (335)
74 PF04230 PS_pyruv_trans: Polys 55.0 17 0.00036 26.6 3.4 40 11-50 63-108 (286)
75 PRK13111 trpA tryptophan synth 54.8 38 0.00081 27.1 5.5 42 24-68 72-118 (258)
76 cd03801 GT1_YqgM_like This fam 54.7 63 0.0014 23.9 6.5 68 5-93 269-338 (374)
77 cd03133 GATase1_ES1 Type 1 glu 54.7 15 0.00033 28.5 3.2 14 15-28 85-98 (213)
78 cd03800 GT1_Sucrose_synthase T 54.0 41 0.00088 26.3 5.6 67 7-94 298-366 (398)
79 cd06320 PBP1_allose_binding Pe 53.6 42 0.00092 25.1 5.5 36 9-49 55-90 (275)
80 PF00290 Trp_syntA: Tryptophan 53.1 28 0.0006 28.0 4.5 44 20-67 67-115 (259)
81 cd06313 PBP1_ABC_sugar_binding 52.3 43 0.00093 25.4 5.4 38 7-49 51-88 (272)
82 cd03807 GT1_WbnK_like This fam 52.0 42 0.00091 25.1 5.2 66 7-94 264-330 (365)
83 PRK13660 hypothetical protein; 51.9 74 0.0016 24.3 6.5 44 1-48 119-167 (182)
84 cd03820 GT1_amsD_like This fam 51.6 94 0.002 22.9 7.0 70 4-93 245-316 (348)
85 cd06300 PBP1_ABC_sugar_binding 51.5 45 0.00098 24.9 5.3 38 7-49 56-93 (272)
86 PRK04155 chaperone protein Hch 51.2 15 0.00033 29.9 2.8 34 15-48 150-187 (287)
87 cd05844 GT1_like_7 Glycosyltra 50.8 1.1E+02 0.0023 23.7 7.5 70 5-94 258-334 (367)
88 PRK04183 glutamyl-tRNA(Gln) am 50.6 35 0.00076 29.3 5.0 49 12-63 153-206 (419)
89 PRK05333 NAD-dependent deacety 49.9 60 0.0013 26.0 6.0 72 4-97 207-280 (285)
90 COG0252 AnsB L-asparaginase/ar 48.5 32 0.0007 28.9 4.4 35 12-49 101-135 (351)
91 cd07062 Peptidase_S66_mccF_lik 48.2 16 0.00034 29.6 2.5 33 12-45 67-99 (308)
92 TIGR00262 trpA tryptophan synt 48.0 1.2E+02 0.0026 24.0 7.4 41 24-67 70-115 (256)
93 TIGR03702 lip_kinase_YegS lipi 48.0 29 0.00062 27.5 3.9 33 15-49 55-88 (293)
94 PRK14046 malate--CoA ligase su 47.8 1.5E+02 0.0033 25.0 8.4 71 12-93 311-384 (392)
95 cd03147 GATase1_Ydr533c_like T 47.5 13 0.00027 29.2 1.7 34 15-48 97-134 (231)
96 PF13607 Succ_CoA_lig: Succiny 47.1 1.1E+02 0.0023 22.1 6.8 36 12-50 55-90 (138)
97 cd06309 PBP1_YtfQ_like Peripla 46.6 54 0.0012 24.6 5.1 38 7-49 51-88 (273)
98 cd03818 GT1_ExpC_like This fam 46.3 91 0.002 25.1 6.7 69 5-94 294-364 (396)
99 TIGR00236 wecB UDP-N-acetylglu 46.0 1.3E+02 0.0028 24.0 7.5 63 7-94 270-332 (365)
100 KOG3196 NADH:ubiquinone oxidor 46.0 17 0.00038 28.7 2.3 40 80-120 179-221 (233)
101 PRK10494 hypothetical protein; 46.0 53 0.0011 26.1 5.1 44 10-54 77-134 (259)
102 PF09152 DUF1937: Domain of un 45.9 31 0.00067 24.8 3.4 36 6-47 74-114 (116)
103 cd03816 GT1_ALG1_like This fam 45.5 1.7E+02 0.0037 24.1 8.3 69 5-94 308-379 (415)
104 COG1208 GCD1 Nucleoside-diphos 45.3 19 0.00041 29.9 2.5 81 15-115 4-86 (358)
105 cd00458 SugarP_isomerase Sugar 45.2 1.2E+02 0.0026 22.2 8.5 46 8-54 16-61 (169)
106 PRK09461 ansA cytoplasmic aspa 44.6 53 0.0012 27.1 5.1 52 10-63 80-136 (335)
107 PRK13055 putative lipid kinase 44.2 26 0.00056 28.5 3.2 32 13-48 61-92 (334)
108 COG3660 Predicted nucleoside-d 43.9 75 0.0016 26.5 5.7 58 8-74 241-299 (329)
109 cd04962 GT1_like_5 This family 43.7 1E+02 0.0022 23.9 6.4 38 6-51 265-304 (371)
110 PLN02668 indole-3-acetate carb 43.6 28 0.00061 29.7 3.3 41 53-93 255-299 (386)
111 COG0787 Alr Alanine racemase [ 43.4 1.2E+02 0.0026 25.7 7.0 62 12-93 55-116 (360)
112 cd03148 GATase1_EcHsp31_like T 43.2 16 0.00034 28.6 1.7 34 15-48 99-136 (232)
113 PRK06895 putative anthranilate 43.1 42 0.00092 24.9 4.0 37 10-47 42-78 (190)
114 PF13407 Peripla_BP_4: Peripla 43.0 61 0.0013 24.0 4.8 39 7-50 51-89 (257)
115 cd03798 GT1_wlbH_like This fam 42.8 85 0.0019 23.3 5.6 70 5-95 272-343 (377)
116 cd00958 DhnA Class I fructose- 42.7 1.2E+02 0.0027 22.9 6.6 54 40-93 178-233 (235)
117 cd04193 UDPGlcNAc_PPase UDPGlc 42.7 1E+02 0.0022 25.4 6.5 68 14-92 17-93 (323)
118 PF00534 Glycos_transf_1: Glyc 42.4 95 0.0021 21.5 5.5 70 4-94 85-156 (172)
119 PRK11914 diacylglycerol kinase 42.3 31 0.00067 27.4 3.3 30 15-49 67-96 (306)
120 cd04180 UGPase_euk_like Eukary 42.2 41 0.00089 26.8 4.0 69 14-94 2-76 (266)
121 KOG3614 Ca2+/Mg2+-permeable ca 42.1 35 0.00076 33.7 4.0 58 14-75 271-329 (1381)
122 cd03128 GAT_1 Type 1 glutamine 41.9 30 0.00066 19.9 2.5 33 15-47 49-85 (92)
123 smart00516 SEC14 Domain in hom 41.5 90 0.002 21.4 5.3 65 24-93 79-147 (158)
124 cd03821 GT1_Bme6_like This fam 41.5 1.5E+02 0.0032 22.2 6.9 67 5-94 275-343 (375)
125 cd06310 PBP1_ABC_sugar_binding 41.2 90 0.0019 23.2 5.5 38 7-49 53-90 (273)
126 PF13692 Glyco_trans_1_4: Glyc 40.7 68 0.0015 21.3 4.4 68 5-93 64-132 (135)
127 cd01356 AcnX_swivel Putative A 40.3 47 0.001 24.0 3.6 38 10-49 41-78 (123)
128 cd06301 PBP1_rhizopine_binding 40.3 81 0.0018 23.5 5.2 37 8-49 53-89 (272)
129 cd06318 PBP1_ABC_sugar_binding 40.2 70 0.0015 23.9 4.8 38 7-49 51-88 (282)
130 cd01653 GATase1 Type 1 glutami 40.1 44 0.00095 20.2 3.2 35 15-49 49-87 (115)
131 PF01985 CRS1_YhbY: CRS1 / Yhb 40.1 41 0.00088 22.2 3.1 58 34-93 9-67 (84)
132 PRK10736 hypothetical protein; 40.0 1.8E+02 0.004 24.7 7.7 75 2-92 209-285 (374)
133 PRK10565 putative carbohydrate 39.6 35 0.00075 29.8 3.4 68 8-91 317-384 (508)
134 PRK09922 UDP-D-galactose:(gluc 39.4 1.8E+02 0.0038 23.1 7.3 69 8-95 254-323 (359)
135 PF06908 DUF1273: Protein of u 39.3 21 0.00045 27.1 1.8 44 1-48 119-167 (177)
136 cd03814 GT1_like_2 This family 39.3 1.2E+02 0.0027 22.8 6.1 67 6-94 261-330 (364)
137 PRK05920 aromatic acid decarbo 38.9 87 0.0019 24.3 5.2 81 11-92 93-183 (204)
138 cd01411 SIR2H SIR2H: Uncharact 38.6 38 0.00083 26.2 3.2 44 4-51 164-207 (225)
139 COG2515 Acd 1-aminocyclopropan 38.4 47 0.001 27.9 3.8 43 10-55 179-221 (323)
140 cd06314 PBP1_tmGBP Periplasmic 38.3 86 0.0019 23.5 5.1 37 7-49 51-87 (271)
141 PRK12361 hypothetical protein; 38.3 58 0.0013 28.3 4.6 29 15-48 300-328 (547)
142 PRK13054 lipid kinase; Reviewe 38.2 50 0.0011 26.2 3.9 34 15-49 59-92 (300)
143 PHA03392 egt ecdysteroid UDP-g 38.1 94 0.002 27.0 5.8 45 12-69 365-409 (507)
144 PLN02327 CTP synthase 38.0 22 0.00047 31.9 1.9 36 9-45 360-395 (557)
145 cd03805 GT1_ALG2_like This fam 37.7 2E+02 0.0044 22.6 7.5 67 6-94 294-362 (392)
146 cd06319 PBP1_ABC_sugar_binding 37.6 97 0.0021 23.0 5.2 38 7-49 51-88 (277)
147 PF11802 CENP-K: Centromere-as 37.6 89 0.0019 25.6 5.2 44 22-69 208-251 (268)
148 PF03308 ArgK: ArgK protein; 37.5 26 0.00057 28.5 2.2 68 5-72 162-241 (266)
149 PRK13057 putative lipid kinase 37.4 47 0.001 26.2 3.6 32 12-49 51-82 (287)
150 PF13500 AAA_26: AAA domain; P 37.3 58 0.0012 23.9 3.9 26 11-36 129-154 (199)
151 cd06281 PBP1_LacI_like_5 Ligan 37.3 82 0.0018 23.5 4.8 55 7-67 51-115 (269)
152 cd03819 GT1_WavL_like This fam 37.2 1.4E+02 0.0031 22.8 6.2 67 6-93 258-327 (355)
153 PF00201 UDPGT: UDP-glucoronos 37.2 72 0.0016 26.8 4.9 62 15-92 344-405 (500)
154 PRK10307 putative glycosyl tra 37.2 2E+02 0.0043 23.3 7.3 71 4-93 296-370 (412)
155 PRK09355 hydroxyethylthiazole 37.2 57 0.0012 25.7 4.0 41 7-51 50-93 (263)
156 PRK14138 NAD-dependent deacety 36.8 94 0.002 24.4 5.2 69 3-93 170-240 (244)
157 COG2242 CobL Precorrin-6B meth 36.7 1.1E+02 0.0023 23.7 5.3 47 16-69 106-154 (187)
158 cd06317 PBP1_ABC_sugar_binding 36.7 89 0.0019 23.1 4.9 38 7-49 52-89 (275)
159 PRK13526 glutamine amidotransf 36.7 17 0.00037 27.8 0.9 15 10-25 38-52 (179)
160 PLN02275 transferase, transfer 36.5 1.3E+02 0.0029 24.2 6.2 68 4-92 299-369 (371)
161 TIGR00502 nagB glucosamine-6-p 36.5 95 0.0021 24.3 5.2 40 13-53 34-75 (259)
162 cd06305 PBP1_methylthioribose_ 36.2 1E+02 0.0023 22.8 5.2 37 8-49 52-88 (273)
163 PF00710 Asparaginase: Asparag 36.1 62 0.0013 26.3 4.2 38 10-49 71-108 (313)
164 cd00489 Barstar_like Barstar i 36.0 97 0.0021 20.5 4.5 41 2-47 9-50 (85)
165 COG1597 LCB5 Sphingosine kinas 35.9 67 0.0015 26.0 4.3 29 15-48 61-90 (301)
166 PRK00861 putative lipid kinase 35.8 52 0.0011 26.0 3.6 30 15-49 60-89 (300)
167 KOG2683 Sirtuin 4 and related 35.8 63 0.0014 26.5 4.0 40 7-50 242-282 (305)
168 PRK10653 D-ribose transporter 35.7 1.1E+02 0.0023 23.5 5.3 36 9-49 80-115 (295)
169 cd06308 PBP1_sensor_kinase_lik 35.4 91 0.002 23.3 4.8 36 9-49 54-89 (270)
170 cd04949 GT1_gtfA_like This fam 35.3 78 0.0017 24.9 4.6 68 8-95 275-344 (372)
171 PLN02871 UDP-sulfoquinovose:DA 35.2 1.5E+02 0.0034 24.7 6.5 72 4-93 324-397 (465)
172 PRK03708 ppnK inorganic polyph 35.0 1.1E+02 0.0024 24.6 5.4 32 12-50 58-89 (277)
173 cd06312 PBP1_ABC_sugar_binding 34.7 1.3E+02 0.0027 22.6 5.5 38 7-49 53-90 (271)
174 TIGR00521 coaBC_dfp phosphopan 34.6 88 0.0019 26.5 5.0 86 10-95 77-178 (390)
175 cd00170 SEC14 Sec14p-like lipi 34.4 1.4E+02 0.0031 19.8 5.3 65 24-93 81-148 (157)
176 cd03812 GT1_CapH_like This fam 34.3 1.9E+02 0.0042 22.1 6.6 69 6-94 261-329 (358)
177 PRK13059 putative lipid kinase 34.3 57 0.0012 25.9 3.6 32 15-49 59-90 (295)
178 cd04882 ACT_Bt0572_2 C-termina 33.9 99 0.0022 17.9 5.8 25 15-39 3-27 (65)
179 PRK06186 hypothetical protein; 33.6 30 0.00064 27.5 1.9 52 9-62 51-102 (229)
180 cd06322 PBP1_ABC_sugar_binding 33.5 1.2E+02 0.0026 22.5 5.1 38 7-49 51-88 (267)
181 PRK00105 cobT nicotinate-nucle 33.1 63 0.0014 27.0 3.8 38 10-47 11-51 (335)
182 PF14947 HTH_45: Winged helix- 33.0 65 0.0014 20.6 3.2 41 52-93 32-72 (77)
183 PRK05579 bifunctional phosphop 32.8 91 0.002 26.5 4.8 87 9-95 80-182 (399)
184 cd01744 GATase1_CPSase Small c 32.8 48 0.001 24.3 2.8 35 12-47 40-75 (178)
185 cd06311 PBP1_ABC_sugar_binding 32.4 1.4E+02 0.003 22.3 5.3 35 10-49 59-93 (274)
186 PRK02649 ppnK inorganic polyph 32.3 1.4E+02 0.0029 24.5 5.6 52 11-68 68-126 (305)
187 PF09848 DUF2075: Uncharacteri 32.3 2.7E+02 0.0058 22.6 7.3 87 7-95 113-215 (352)
188 TIGR00253 RNA_bind_YhbY putati 32.2 1.7E+02 0.0036 20.0 5.2 58 35-94 10-68 (95)
189 cd06316 PBP1_ABC_sugar_binding 31.9 1.2E+02 0.0026 23.1 5.0 38 7-49 52-89 (294)
190 PRK11096 ansB L-asparaginase I 31.8 67 0.0014 26.9 3.8 50 10-62 99-153 (347)
191 cd06323 PBP1_ribose_binding Pe 31.7 1.5E+02 0.0032 21.7 5.4 38 7-49 51-88 (268)
192 PF12694 MoCo_carrier: Putativ 31.7 2.2E+02 0.0047 21.2 6.9 43 2-50 54-99 (145)
193 PF01202 SKI: Shikimate kinase 31.5 81 0.0017 22.5 3.8 32 13-50 63-94 (158)
194 PF02302 PTS_IIB: PTS system, 31.4 31 0.00066 22.1 1.4 15 14-28 2-16 (90)
195 cd06324 PBP1_ABC_sugar_binding 31.3 1.2E+02 0.0027 23.4 5.1 33 11-49 58-90 (305)
196 TIGR03160 cobT_DBIPRT nicotina 31.3 70 0.0015 26.7 3.8 29 10-38 10-38 (333)
197 cd06321 PBP1_ABC_sugar_binding 31.3 1.5E+02 0.0032 22.1 5.3 37 8-49 54-90 (271)
198 PF03454 MoeA_C: MoeA C-termin 31.3 17 0.00037 22.5 0.1 17 9-25 45-61 (72)
199 cd03817 GT1_UGDG_like This fam 31.3 2.3E+02 0.0049 21.2 6.6 38 5-50 272-311 (374)
200 cd04728 ThiG Thiazole synthase 31.1 58 0.0013 26.3 3.1 28 7-34 169-196 (248)
201 cd01412 SIRT5_Af1_CobB SIRT5_A 30.9 1.5E+02 0.0033 22.5 5.4 64 6-90 159-223 (224)
202 KOG3349 Predicted glycosyltran 30.8 1.2E+02 0.0026 23.2 4.6 46 15-69 83-129 (170)
203 COG0363 NagB 6-phosphogluconol 30.7 81 0.0017 24.9 3.9 43 12-55 32-75 (238)
204 PF02016 Peptidase_S66: LD-car 30.7 9.7 0.00021 30.6 -1.3 51 12-69 63-114 (284)
205 PF09369 DUF1998: Domain of un 30.6 28 0.00061 22.5 1.1 14 18-31 44-57 (84)
206 cd00951 KDGDH 5-dehydro-4-deox 30.6 2.1E+02 0.0045 22.8 6.3 52 12-65 95-148 (289)
207 cd01408 SIRT1 SIRT1: Eukaryoti 30.5 43 0.00093 26.1 2.3 67 4-89 168-234 (235)
208 cd03802 GT1_AviGT4_like This f 30.4 1.4E+02 0.0029 22.7 5.1 65 6-93 238-305 (335)
209 cd06315 PBP1_ABC_sugar_binding 30.3 1.5E+02 0.0033 22.4 5.4 38 7-49 52-89 (280)
210 cd03130 GATase1_CobB Type 1 gl 30.1 65 0.0014 24.2 3.2 36 12-48 41-82 (198)
211 KOG1584 Sulfotransferase [Gene 30.1 45 0.00097 27.6 2.4 32 20-61 152-183 (297)
212 TIGR00196 yjeF_cterm yjeF C-te 29.9 1E+02 0.0022 24.0 4.4 40 7-50 88-127 (272)
213 PF01989 DUF126: Protein of un 29.9 30 0.00065 23.2 1.2 38 10-49 26-63 (82)
214 KOG0503 Asparaginase [Amino ac 29.7 85 0.0019 26.8 4.0 37 10-49 120-156 (368)
215 TIGR00520 asnASE_II L-asparagi 29.6 71 0.0015 26.7 3.6 48 12-62 106-158 (349)
216 PF09353 DUF1995: Domain of un 29.5 77 0.0017 24.0 3.5 36 13-55 99-135 (209)
217 cd05567 PTS_IIB_mannitol PTS_I 29.3 34 0.00074 22.2 1.4 11 14-24 3-13 (87)
218 COG0710 AroD 3-dehydroquinate 29.1 1.7E+02 0.0037 23.2 5.5 49 1-51 135-186 (231)
219 PRK07226 fructose-bisphosphate 29.1 2.4E+02 0.0053 22.1 6.4 56 40-95 195-252 (267)
220 TIGR00734 hisAF_rel hisA/hisF 28.9 55 0.0012 25.3 2.7 27 7-33 178-204 (221)
221 KOG1718 Dual specificity phosp 28.8 47 0.001 25.9 2.2 33 28-64 124-156 (198)
222 cd04908 ACT_Bt0572_1 N-termina 28.8 1.4E+02 0.003 18.0 5.4 26 14-39 4-29 (66)
223 PRK11253 ldcA L,D-carboxypepti 28.8 1.4E+02 0.0031 24.2 5.2 45 3-48 52-104 (305)
224 TIGR01949 AroFGH_arch predicte 28.8 2.3E+02 0.0049 22.1 6.2 55 40-94 191-247 (258)
225 cd01539 PBP1_GGBP Periplasmic 28.6 1.5E+02 0.0033 22.9 5.2 38 7-49 53-90 (303)
226 PRK13337 putative lipid kinase 28.6 1E+02 0.0022 24.5 4.3 31 15-48 60-90 (304)
227 cd04146 RERG_RasL11_like RERG/ 28.5 1.7E+02 0.0037 20.2 5.0 43 7-49 67-114 (165)
228 cd06302 PBP1_LsrB_Quorum_Sensi 28.5 1.6E+02 0.0036 22.6 5.3 36 9-49 54-89 (298)
229 cd01750 GATase1_CobQ Type 1 gl 28.3 83 0.0018 23.5 3.5 19 11-30 37-55 (194)
230 TIGR03087 stp1 sugar transfera 28.2 1.6E+02 0.0035 23.8 5.4 65 7-94 293-360 (397)
231 TIGR00694 thiM hydroxyethylthi 28.0 99 0.0021 24.1 4.0 39 6-46 44-84 (249)
232 PF02277 DBI_PRT: Phosphoribos 28.0 50 0.0011 27.4 2.4 40 9-48 17-60 (327)
233 cd01540 PBP1_arabinose_binding 27.9 1.5E+02 0.0032 22.3 4.9 38 7-49 50-87 (289)
234 cd06292 PBP1_LacI_like_10 Liga 27.9 96 0.0021 23.1 3.8 60 6-67 50-121 (273)
235 PRK06756 flavodoxin; Provision 27.8 2.1E+02 0.0047 19.9 8.2 77 9-85 47-132 (148)
236 cd07020 Clp_protease_NfeD_1 No 27.7 1.3E+02 0.0028 22.3 4.5 34 11-48 29-65 (187)
237 PRK04531 acetylglutamate kinas 27.6 3.8E+02 0.0083 22.8 7.8 60 14-81 39-100 (398)
238 PF00627 UBA: UBA/TS-N domain; 27.6 18 0.00038 20.1 -0.2 32 59-90 5-37 (37)
239 cd03811 GT1_WabH_like This fam 27.6 2.2E+02 0.0048 20.9 5.7 36 7-50 259-296 (353)
240 cd01536 PBP1_ABC_sugar_binding 27.5 1.9E+02 0.0042 20.9 5.3 38 7-49 51-88 (267)
241 PRK10355 xylF D-xylose transpo 27.3 1.7E+02 0.0036 23.4 5.3 57 6-67 76-144 (330)
242 PRK05713 hypothetical protein; 27.2 1.7E+02 0.0037 23.3 5.3 51 41-93 192-244 (312)
243 cd01882 BMS1 Bms1. Bms1 is an 26.7 2.9E+02 0.0062 21.0 10.0 98 8-114 100-213 (225)
244 KOG4435 Predicted lipid kinase 26.7 44 0.00096 29.4 1.9 40 15-58 119-158 (535)
245 PHA01630 putative group 1 glyc 26.6 1.6E+02 0.0034 23.9 5.1 40 4-51 202-243 (331)
246 cd06306 PBP1_TorT-like TorT-li 26.5 1.7E+02 0.0036 22.0 4.9 35 8-48 54-88 (268)
247 cd04906 ACT_ThrD-I_1 First of 26.4 1.7E+02 0.0036 18.8 4.3 19 15-33 5-23 (85)
248 PTZ00339 UDP-N-acetylglucosami 26.4 93 0.002 27.3 3.9 39 14-63 108-150 (482)
249 PF04936 DUF658: Protein of un 26.4 64 0.0014 24.9 2.5 21 21-41 13-41 (186)
250 PRK14077 pnk inorganic polypho 26.0 2.2E+02 0.0049 23.0 5.8 52 12-69 65-123 (287)
251 PF00995 Sec1: Sec1 family; I 26.0 97 0.0021 26.4 3.9 42 12-55 516-557 (564)
252 cd04197 eIF-2B_epsilon_N The N 25.9 88 0.0019 23.3 3.2 62 15-93 3-67 (217)
253 KOG2764 Putative transcription 25.9 36 0.00077 27.5 1.1 10 15-24 70-80 (247)
254 cd01538 PBP1_ABC_xylose_bindin 25.9 2E+02 0.0044 21.9 5.3 38 7-49 51-88 (288)
255 PRK00208 thiG thiazole synthas 25.6 86 0.0019 25.4 3.2 29 6-34 168-196 (250)
256 cd06307 PBP1_uncharacterized_s 25.6 2.5E+02 0.0055 20.9 5.8 35 10-49 57-91 (275)
257 cd01746 GATase1_CTP_Synthase T 25.4 52 0.0011 25.8 2.0 35 10-45 54-88 (235)
258 COG0703 AroK Shikimate kinase 25.4 3E+02 0.0066 20.8 6.4 67 9-92 69-136 (172)
259 cd04955 GT1_like_6 This family 25.4 2E+02 0.0043 22.0 5.2 38 5-50 261-301 (363)
260 TIGR00147 lipid kinase, YegS/R 25.3 88 0.0019 24.5 3.3 34 12-49 58-91 (293)
261 PRK03619 phosphoribosylformylg 25.1 70 0.0015 24.6 2.6 13 15-27 44-56 (219)
262 PF05195 AMP_N: Aminopeptidase 25.1 49 0.0011 23.5 1.7 22 3-24 9-31 (134)
263 cd01635 Glycosyltransferase_GT 25.0 1.4E+02 0.0031 20.7 4.0 41 5-51 175-215 (229)
264 cd06283 PBP1_RegR_EndR_KdgR_li 25.0 1.5E+02 0.0032 21.8 4.3 36 7-49 51-86 (267)
265 PF05690 ThiG: Thiazole biosyn 25.0 62 0.0014 26.2 2.3 39 5-49 167-205 (247)
266 PF11994 DUF3489: Protein of u 24.9 34 0.00075 22.6 0.7 20 17-37 20-39 (72)
267 PRK14004 hisH imidazole glycer 24.9 62 0.0013 24.9 2.3 19 10-30 36-54 (210)
268 PRK01231 ppnK inorganic polyph 24.8 1.8E+02 0.0039 23.6 5.0 49 15-68 65-120 (295)
269 COG4671 Predicted glycosyl tra 24.8 4.6E+02 0.01 22.7 8.2 75 3-93 286-362 (400)
270 COG0063 Predicted sugar kinase 24.6 1.4E+02 0.003 24.3 4.3 72 7-91 97-168 (284)
271 smart00870 Asparaginase Aspara 24.3 1E+02 0.0023 25.1 3.6 51 11-63 77-132 (323)
272 PF03295 Pox_TAA1: Poxvirus tr 24.3 1.2E+02 0.0026 19.6 3.1 42 76-118 19-60 (63)
273 cd06277 PBP1_LacI_like_1 Ligan 24.3 1.2E+02 0.0027 22.4 3.8 35 7-49 54-88 (268)
274 cd02028 UMPK_like Uridine mono 24.1 1.7E+02 0.0038 21.4 4.5 63 40-111 26-88 (179)
275 cd06289 PBP1_MalI_like Ligand- 24.0 1.9E+02 0.004 21.2 4.7 36 8-49 52-87 (268)
276 PRK08057 cobalt-precorrin-6x r 23.9 3.7E+02 0.008 21.3 7.4 74 14-93 43-127 (248)
277 PRK15427 colanic acid biosynth 23.8 4.1E+02 0.009 21.9 7.1 71 5-94 292-368 (406)
278 cd03144 GATase1_ScBLP_like Typ 23.6 71 0.0015 22.6 2.2 18 15-34 47-64 (114)
279 TIGR01919 hisA-trpF 1-(5-phosp 23.5 91 0.002 24.5 3.0 48 7-58 187-234 (243)
280 CHL00162 thiG thiamin biosynth 23.5 75 0.0016 26.0 2.5 30 5-34 181-210 (267)
281 cd04929 ACT_TPH ACT domain of 23.5 2.1E+02 0.0045 18.3 4.9 25 15-39 4-28 (74)
282 PRK05380 pyrG CTP synthetase; 23.3 47 0.001 29.6 1.5 36 9-45 341-376 (533)
283 cd06270 PBP1_GalS_like Ligand 23.3 3.1E+02 0.0068 20.2 6.3 55 6-67 50-115 (268)
284 TIGR03800 PLP_synth_Pdx2 pyrid 23.2 91 0.002 23.3 2.9 11 15-25 39-49 (184)
285 cd05142 Barstar Barstar is an 23.2 94 0.002 20.7 2.6 42 2-48 10-52 (87)
286 PRK09701 D-allose transporter 23.2 2.4E+02 0.0051 22.0 5.4 38 7-49 78-115 (311)
287 cd06299 PBP1_LacI_like_13 Liga 23.1 1.6E+02 0.0034 21.7 4.2 36 7-49 51-86 (265)
288 cd01545 PBP1_SalR Ligand-bindi 23.1 2E+02 0.0043 21.1 4.7 36 8-49 53-88 (270)
289 cd04724 Tryptophan_synthase_al 23.0 3.6E+02 0.0078 20.9 7.7 39 25-67 61-104 (242)
290 CHL00188 hisH imidazole glycer 23.0 1.2E+02 0.0025 23.3 3.5 15 10-26 38-52 (210)
291 PRK02122 glucosamine-6-phospha 22.9 1.8E+02 0.004 26.4 5.1 43 10-53 57-101 (652)
292 COG0148 Eno Enolase [Carbohydr 22.7 2.8E+02 0.0061 24.2 5.9 67 4-71 320-386 (423)
293 cd03169 GATase1_PfpI_1 Type 1 22.6 1.1E+02 0.0024 22.1 3.2 35 15-49 79-116 (180)
294 COG1609 PurR Transcriptional r 22.6 1.5E+02 0.0032 24.0 4.2 56 5-67 108-174 (333)
295 COG4742 Predicted transcriptio 22.5 3.9E+02 0.0084 21.7 6.5 56 3-83 14-69 (260)
296 cd01743 GATase1_Anthranilate_S 22.5 1E+02 0.0022 22.5 3.0 36 10-48 41-78 (184)
297 TIGR02417 fruct_sucro_rep D-fr 22.5 1.7E+02 0.0037 22.6 4.4 54 8-67 113-177 (327)
298 PRK13527 glutamine amidotransf 22.4 92 0.002 23.2 2.8 13 12-25 44-56 (200)
299 TIGR02665 molyb_mobA molybdopt 22.3 88 0.0019 22.3 2.6 26 14-50 2-27 (186)
300 TIGR02955 TMAO_TorT TMAO reduc 22.3 2.1E+02 0.0046 21.9 4.9 36 7-48 53-88 (295)
301 PRK11574 oxidative-stress-resi 22.3 1.1E+02 0.0025 22.3 3.2 38 12-50 67-108 (196)
302 cd03132 GATase1_catalase Type 22.3 90 0.002 21.6 2.5 61 15-86 65-129 (142)
303 PLN02832 glutamine amidotransf 22.2 43 0.00093 26.8 0.9 15 11-26 38-52 (248)
304 PF01535 PPR: PPR repeat; Int 22.2 86 0.0019 15.2 1.9 19 50-68 13-31 (31)
305 PF14953 DUF4504: Domain of un 22.0 2E+02 0.0043 23.2 4.7 53 41-93 32-94 (270)
306 PF01872 RibD_C: RibD C-termin 21.9 2E+02 0.0043 21.1 4.5 77 4-93 33-133 (200)
307 TIGR01382 PfpI intracellular p 21.8 1.7E+02 0.0036 20.6 3.9 35 12-49 61-100 (166)
308 PRK13142 hisH imidazole glycer 21.6 1.4E+02 0.0031 22.8 3.7 11 10-21 36-46 (192)
309 cd02513 CMP-NeuAc_Synthase CMP 21.5 3.3E+02 0.0071 19.8 5.6 57 15-93 4-61 (223)
310 cd05141 Barstar_evA4336-like B 21.5 59 0.0013 21.1 1.4 30 3-33 10-40 (81)
311 cd06274 PBP1_FruR Ligand bindi 21.4 2.1E+02 0.0045 21.2 4.5 36 7-49 51-86 (264)
312 PHA02448 hypothetical protein 21.3 1.7E+02 0.0036 22.0 3.8 55 2-67 135-189 (192)
313 PRK13587 1-(5-phosphoribosyl)- 21.2 85 0.0018 24.4 2.4 27 7-33 186-212 (234)
314 cd06297 PBP1_LacI_like_12 Liga 21.1 2.2E+02 0.0047 21.3 4.6 34 9-49 53-86 (269)
315 CHL00101 trpG anthranilate syn 21.0 1E+02 0.0022 22.9 2.7 16 11-27 43-58 (190)
316 TIGR02472 sucr_P_syn_N sucrose 21.0 4E+02 0.0087 22.0 6.6 59 13-93 342-403 (439)
317 PLN02929 NADH kinase 20.9 1.6E+02 0.0034 24.3 4.0 33 11-50 64-96 (301)
318 PRK15395 methyl-galactoside AB 20.9 2.5E+02 0.0055 22.2 5.2 36 9-49 79-114 (330)
319 cd06189 flavin_oxioreductase N 20.8 3.3E+02 0.0071 20.1 5.5 44 41-86 98-141 (224)
320 PLN02446 (5-phosphoribosyl)-5- 20.6 89 0.0019 25.3 2.5 41 6-50 200-240 (262)
321 PRK10343 RNA-binding protein Y 20.6 3E+02 0.0064 19.0 5.3 55 37-93 14-69 (97)
322 COG3155 ElbB Uncharacterized p 20.6 45 0.00097 25.9 0.7 37 13-50 87-137 (217)
323 PTZ00378 hypothetical protein; 20.5 3.6E+02 0.0078 24.2 6.3 65 4-70 389-455 (518)
324 cd05566 PTS_IIB_galactitol PTS 20.5 64 0.0014 20.7 1.4 13 14-26 3-15 (89)
325 PRK09484 3-deoxy-D-manno-octul 20.4 1.8E+02 0.0038 21.4 3.9 28 6-33 142-169 (183)
326 TIGR03476 HpnL putative membra 20.4 36 0.00079 27.1 0.2 25 14-39 263-287 (318)
327 cd08324 CARD_NOD1_CARD4 Caspas 20.3 41 0.0009 22.9 0.4 41 58-98 19-59 (85)
328 cd06190 T4MO_e_transfer_like T 20.3 3E+02 0.0065 20.4 5.2 47 41-87 97-143 (232)
329 PRK00481 NAD-dependent deacety 20.3 2.8E+02 0.0061 21.4 5.2 67 5-92 171-238 (242)
330 TIGR02637 RhaS rhamnose ABC tr 20.3 2.9E+02 0.0063 21.1 5.3 36 9-49 54-89 (302)
331 PRK07765 para-aminobenzoate sy 20.2 1.3E+02 0.0029 22.9 3.3 37 10-47 45-82 (214)
332 TIGR03609 S_layer_CsaB polysac 20.1 2.9E+02 0.0062 21.5 5.3 41 8-50 61-108 (298)
333 cd06209 BenDO_FAD_NAD Benzoate 20.1 2.4E+02 0.0052 20.9 4.7 45 41-87 102-146 (228)
334 cd01410 SIRT7 SIRT7: Eukaryoti 20.0 1.2E+02 0.0025 23.2 2.9 43 4-50 148-191 (206)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=5.6e-34 Score=215.94 Aligned_cols=93 Identities=48% Similarity=0.925 Sum_probs=90.8
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEc
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 80 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 80 (123)
|++||.+|++.|||||+||||+|||||++++|+|.|+|+|+||++++|.+|||++|++|+++|+++||+++++.+.+.++
T Consensus 86 ~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~ 165 (178)
T TIGR00730 86 MHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLKLIHVV 165 (178)
T ss_pred HHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcCcEEEc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhh
Q 033246 81 PNAKELVQKLEEY 93 (123)
Q Consensus 81 dd~ee~l~~l~~~ 93 (123)
||++|+++.|+++
T Consensus 166 d~~~e~~~~i~~~ 178 (178)
T TIGR00730 166 SRPDELIEQVQNY 178 (178)
T ss_pred CCHHHHHHHHHhC
Confidence 9999999999763
No 2
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=6.3e-34 Score=205.83 Aligned_cols=90 Identities=46% Similarity=0.858 Sum_probs=86.6
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCC-cEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEE
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDK-PVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 79 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~k-Piilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~ 79 (123)
|++||.+|++.|||||+||||+|||+|+|++|+|+|+|.++| ||+|+|.+|||+++++++++|+++||+++++.+.+.+
T Consensus 43 ~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~ 122 (133)
T PF03641_consen 43 MFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHF 122 (133)
T ss_dssp HHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEE
T ss_pred hHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEE
Confidence 689999999999999999999999999999999999999877 9999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHH
Q 033246 80 APNAKELVQKL 90 (123)
Q Consensus 80 ~dd~ee~l~~l 90 (123)
+||++|++++|
T Consensus 123 ~d~~~e~~~~i 133 (133)
T PF03641_consen 123 VDDPEEALEYI 133 (133)
T ss_dssp ESSHHHHHHHH
T ss_pred eCCHHHHHhhC
Confidence 99999999876
No 3
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=4.2e-26 Score=176.42 Aligned_cols=96 Identities=40% Similarity=0.794 Sum_probs=92.8
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCC--CCcEEEEeCCCccHHHHHHHH-HHHHcCCCCcccccce
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIH--DKPVGLINVDGYYNSLLNFID-KAVDDGFISPSQRSIL 77 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~--~kPiilln~~gf~~~l~~~l~-~~~~~gfi~~~~~~~i 77 (123)
|++||.+|.++|||||+||||+||+||+|++|+|.|++.| .+|+++++.++||+++.++++ +++.++++++.+.+++
T Consensus 100 ~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~~~i~~~~~~~~ 179 (205)
T COG1611 100 FAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLIVEGLISEADRELL 179 (205)
T ss_pred HHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHHHhhcCChhhhhhe
Confidence 6899999999999999999999999999999999999998 999999999999999999999 9999999999999999
Q ss_pred EEcCCHHHHHHHHHhhcCC
Q 033246 78 VSAPNAKELVQKLEEYVPL 96 (123)
Q Consensus 78 ~~~dd~ee~l~~l~~~~~~ 96 (123)
.++||++++++.+..+.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 180 IVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred eeecCHHHHHHHHHHhccc
Confidence 9999999999999998765
No 4
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=99.89 E-value=3.3e-23 Score=154.33 Aligned_cols=78 Identities=21% Similarity=0.357 Sum_probs=68.2
Q ss_pred CchHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEc
Q 033246 1 MHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 80 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 80 (123)
|++||++|.+.|||||++|||+|||+|++++|+ ++|||+++|.+|||+++++++ +.+.+|++ + .+.++
T Consensus 81 ~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~~g~~~~~l~~~--~~~~~~~~-~---~~~~~ 148 (159)
T TIGR00725 81 NFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRGTGGWTDRLSQV--LIEGVYLD-E---RVIVE 148 (159)
T ss_pred cchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEECCCcchHHHHHH--Hhcccccc-c---eeEec
Confidence 478999999999999999999999999999998 589999999999999998864 44444444 3 69999
Q ss_pred CCHHHHHHHH
Q 033246 81 PNAKELVQKL 90 (123)
Q Consensus 81 dd~ee~l~~l 90 (123)
+||+|+++++
T Consensus 149 ~~~~e~~~~~ 158 (159)
T TIGR00725 149 ITPAEAVKLA 158 (159)
T ss_pred CCHHHHHHhh
Confidence 9999999865
No 5
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=95.88 E-value=0.025 Score=39.07 Aligned_cols=42 Identities=38% Similarity=0.351 Sum_probs=35.6
Q ss_pred hHHHHHHHhcCEEEEcCCc----hhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 3 QRKAEMARNSDCFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 3 eRK~~m~~~sDa~I~lPGG----~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
+|-...++.||++|+...| .||.-|+..+..+ +|||+++..+
T Consensus 53 ~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~al------gkpv~~~~~d 98 (113)
T PF05014_consen 53 ERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYAL------GKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHHT------TSEEEEEECC
T ss_pred HHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHC------CCEEEEEEcC
Confidence 4556778999998887766 9999999999976 8999999875
No 6
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=94.64 E-value=0.38 Score=37.66 Aligned_cols=69 Identities=29% Similarity=0.329 Sum_probs=48.7
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC---
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP--- 81 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d--- 81 (123)
-.-++..||++|.. ||++|+-|.. ..+||++++-..+++++...- +.+.+.|.. ...+
T Consensus 244 ~~~~m~~ad~vIs~-~G~~t~~Ea~---------~~g~P~l~ip~~~~~EQ~~~a-~~l~~~G~~--------~~~~~~~ 304 (318)
T PF13528_consen 244 FAELMAAADLVISK-GGYTTISEAL---------ALGKPALVIPRPGQDEQEYNA-RKLEELGLG--------IVLSQED 304 (318)
T ss_pred HHHHHHhCCEEEEC-CCHHHHHHHH---------HcCCCEEEEeCCCCchHHHHH-HHHHHCCCe--------EEccccc
Confidence 34467788888776 8899998876 238999999887777776552 556666644 3323
Q ss_pred -CHHHHHHHHHh
Q 033246 82 -NAKELVQKLEE 92 (123)
Q Consensus 82 -d~ee~l~~l~~ 92 (123)
+++.+.+.|++
T Consensus 305 ~~~~~l~~~l~~ 316 (318)
T PF13528_consen 305 LTPERLAEFLER 316 (318)
T ss_pred CCHHHHHHHHhc
Confidence 67888777765
No 7
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=94.62 E-value=0.25 Score=38.59 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=53.7
Q ss_pred chHHHHHHHhcCEEEEcCCc--hhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEE
Q 033246 2 HQRKAEMARNSDCFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 79 (123)
Q Consensus 2 ~eRK~~m~~~sDa~I~lPGG--~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~ 79 (123)
..|.+++..+||++|++-.| -||+..+-.++.+ +|||+.+-.. .+++.-+--..++++| . ..
T Consensus 146 ~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~~------gr~v~~~pg~-~~~~~~~G~~~Li~~G-A--------~~ 209 (220)
T TIGR00732 146 PKRNRIISGLSRAVLVVEAPLKSGALITARYALEQ------GREVFAYPGD-LNSPESDGCHKLIEQG-A--------AL 209 (220)
T ss_pred HHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHHh------CCcEEEEcCC-CCCccchHHHHHHHCC-C--------EE
Confidence 36999999999999999987 5999999888865 8999999653 5554444445677766 2 34
Q ss_pred cCCHHHHHHH
Q 033246 80 APNAKELVQK 89 (123)
Q Consensus 80 ~dd~ee~l~~ 89 (123)
+.+++++++.
T Consensus 210 i~~~~d~~~~ 219 (220)
T TIGR00732 210 ITSAKDILET 219 (220)
T ss_pred ECCHHHHHHh
Confidence 5677777653
No 8
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=91.60 E-value=0.98 Score=32.44 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=30.7
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccH-HHHHHHHHHHHcCCC
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYN-SLLNFIDKAVDDGFI 69 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~-~l~~~l~~~~~~gfi 69 (123)
-..+++.|| +||--||.||+-|+.. .++|.|++-..+-++ +-...-+.+.+.|..
T Consensus 66 m~~~m~~aD-lvIs~aG~~Ti~E~l~---------~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~ 121 (167)
T PF04101_consen 66 MAELMAAAD-LVISHAGAGTIAEALA---------LGKPAIVIPLPGAADNHQEENAKELAKKGAA 121 (167)
T ss_dssp HHHHHHHHS-EEEECS-CHHHHHHHH---------CT--EEEE--TTT-T-CHHHHHHHHHHCCCC
T ss_pred HHHHHHHcC-EEEeCCCccHHHHHHH---------cCCCeeccCCCCcchHHHHHHHHHHHHcCCc
Confidence 345788899 6777788999988762 489999885543221 222222446666643
No 9
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=88.86 E-value=2.9 Score=34.37 Aligned_cols=68 Identities=24% Similarity=0.235 Sum_probs=41.5
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKE 85 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee 85 (123)
.-++..||++|.=|||. | ++|+++. ++|+++++..+- ....+ -..+.+.|+. ..++|+++
T Consensus 268 ~~~~~~aDl~I~k~gg~-t---l~EA~a~------G~PvI~~~~~pg-qe~~N-~~~~~~~G~g--------~~~~~~~~ 327 (391)
T PRK13608 268 NEWMASSQLMITKPGGI-T---ISEGLAR------CIPMIFLNPAPG-QELEN-ALYFEEKGFG--------KIADTPEE 327 (391)
T ss_pred HHHHHhhhEEEeCCchH-H---HHHHHHh------CCCEEECCCCCC-cchhH-HHHHHhCCcE--------EEeCCHHH
Confidence 45689999999888875 6 4455554 899999975321 11111 1223344432 34668888
Q ss_pred HHHHHHhh
Q 033246 86 LVQKLEEY 93 (123)
Q Consensus 86 ~l~~l~~~ 93 (123)
+.+.+.+.
T Consensus 328 l~~~i~~l 335 (391)
T PRK13608 328 AIKIVASL 335 (391)
T ss_pred HHHHHHHH
Confidence 87777665
No 10
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=87.49 E-value=3.8 Score=30.33 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=47.2
Q ss_pred hHHHHHHHhcCEEEEcCCc-hhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC
Q 033246 3 QRKAEMARNSDCFIALPGG-YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 81 (123)
Q Consensus 3 eRK~~m~~~sDa~I~lPGG-~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d 81 (123)
-|.+.+++.||.+|+.=|- +=-=+-.|.+=... ...||+|++.....--||.+. + .....++.
T Consensus 64 iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~---AlgKplI~lh~~~~~HpLKEv-d------------a~A~a~~e 127 (141)
T PF11071_consen 64 IRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAA---ALGKPLITLHPEELHHPLKEV-D------------AAALAVAE 127 (141)
T ss_pred HHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHH-h------------HhhHhhhC
Confidence 4888999999999998773 11111112111111 138999999987666666653 2 22336799
Q ss_pred CHHHHHHHHH
Q 033246 82 NAKELVQKLE 91 (123)
Q Consensus 82 d~ee~l~~l~ 91 (123)
+|+++++.|+
T Consensus 128 t~~Qvv~iL~ 137 (141)
T PF11071_consen 128 TPEQVVEILR 137 (141)
T ss_pred CHHHHHHHHH
Confidence 9999999875
No 11
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=86.57 E-value=4 Score=33.32 Aligned_cols=70 Identities=26% Similarity=0.349 Sum_probs=41.9
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHH
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAK 84 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~e 84 (123)
...++..||++|.-||| +|+-| +++ ..+|+|+.+.-. -...-+ .+.+.+.|.- ..+.|++
T Consensus 276 ~~~l~~aaDv~V~~~g~-~ti~E---Ama------~g~PvI~~~~~p-gqe~gn-~~~i~~~g~g--------~~~~~~~ 335 (382)
T PLN02605 276 MEEWMGACDCIITKAGP-GTIAE---ALI------RGLPIILNGYIP-GQEEGN-VPYVVDNGFG--------AFSESPK 335 (382)
T ss_pred HHHHHHhCCEEEECCCc-chHHH---HHH------cCCCEEEecCCC-ccchhh-HHHHHhCCce--------eecCCHH
Confidence 34567899999986654 67644 554 389999987411 000111 1233333321 2458999
Q ss_pred HHHHHHHhhc
Q 033246 85 ELVQKLEEYV 94 (123)
Q Consensus 85 e~l~~l~~~~ 94 (123)
++.+.+.+..
T Consensus 336 ~la~~i~~ll 345 (382)
T PLN02605 336 EIARIVAEWF 345 (382)
T ss_pred HHHHHHHHHH
Confidence 9888887764
No 12
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=84.25 E-value=5.7 Score=29.51 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=46.8
Q ss_pred hHHHHHHHhcCEEEEcCCc-hhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC
Q 033246 3 QRKAEMARNSDCFIALPGG-YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 81 (123)
Q Consensus 3 eRK~~m~~~sDa~I~lPGG-~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d 81 (123)
-|.+.+++.||.+|+.=|- +=--+-.|.+=... ...||+|++.....--+|.+. + .....++.
T Consensus 67 iRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aa---AlgKplI~lh~~~~~HpLKEv-d------------aaA~avae 130 (144)
T TIGR03646 67 IRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAA---ALGKPLIILRPEELIHPLKEV-D------------NKAQAVVE 130 (144)
T ss_pred HHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHH-h------------HHHHHHhc
Confidence 4888999999999998763 11111122211111 138999999987666666553 2 22235789
Q ss_pred CHHHHHHHHH
Q 033246 82 NAKELVQKLE 91 (123)
Q Consensus 82 d~ee~l~~l~ 91 (123)
+|+++++.|+
T Consensus 131 tp~Qvv~iL~ 140 (144)
T TIGR03646 131 TPEQAIETLK 140 (144)
T ss_pred CHHHHHHHHH
Confidence 9999999874
No 13
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=84.08 E-value=5.4 Score=32.25 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=42.6
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHH
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 86 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~ 86 (123)
.++..+|+|| --||.||+-|.. .+.+|++++-. +.|+. .+-+.+.+.|.-..-.... -+++++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal---------~~GvP~v~~P~--~~dQ~-~~a~~~~~~G~g~~l~~~~----~~~~~l 362 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAAL---------RAGVPQLVVPF--FGDQP-FWAARVAELGAGPALDPRE----LTAERL 362 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHH---------HcCCCEEeeCC--CCCcH-HHHHHHHHCCCCCCCCccc----CCHHHH
Confidence 3566788877 667789998876 35899999963 34433 2335677766321111111 267777
Q ss_pred HHHHHhh
Q 033246 87 VQKLEEY 93 (123)
Q Consensus 87 l~~l~~~ 93 (123)
.+.+++.
T Consensus 363 ~~al~~~ 369 (401)
T cd03784 363 AAALRRL 369 (401)
T ss_pred HHHHHHH
Confidence 6666654
No 14
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=83.96 E-value=7.6 Score=31.29 Aligned_cols=69 Identities=26% Similarity=0.264 Sum_probs=41.6
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKE 85 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee 85 (123)
..++..||++|.-|||. | ++|+++. .+|+|+++..+-.. ....+.+.+.|+ .....|+++
T Consensus 268 ~~l~~~aD~~v~~~gg~-t---~~EA~a~------g~PvI~~~~~~g~~--~~n~~~~~~~G~--------~~~~~~~~~ 327 (380)
T PRK13609 268 DELFRVTSCMITKPGGI-T---LSEAAAL------GVPVILYKPVPGQE--KENAMYFERKGA--------AVVIRDDEE 327 (380)
T ss_pred HHHHHhccEEEeCCCch-H---HHHHHHh------CCCEEECCCCCCcc--hHHHHHHHhCCc--------EEEECCHHH
Confidence 45678999998767754 5 4455554 89999876422211 111123344454 244678888
Q ss_pred HHHHHHhhc
Q 033246 86 LVQKLEEYV 94 (123)
Q Consensus 86 ~l~~l~~~~ 94 (123)
+.+.|....
T Consensus 328 l~~~i~~ll 336 (380)
T PRK13609 328 VFAKTEALL 336 (380)
T ss_pred HHHHHHHHH
Confidence 888777653
No 15
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=83.95 E-value=8.2 Score=30.74 Aligned_cols=54 Identities=26% Similarity=0.315 Sum_probs=36.1
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCC
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFI 69 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi 69 (123)
-.-++..||++|.- ||.+|+.|. +. +.+|++++...+.++...+ .+.+.+.|..
T Consensus 241 ~~~~l~~ad~vI~~-~G~~t~~Ea---~~------~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~~ 294 (321)
T TIGR00661 241 FKELIKNAELVITH-GGFSLISEA---LS------LGKPLIVIPDLGQFEQGNN-AVKLEDLGCG 294 (321)
T ss_pred HHHHHHhCCEEEEC-CChHHHHHH---HH------cCCCEEEEcCCCcccHHHH-HHHHHHCCCE
Confidence 34566778887776 677886664 43 4899999987666665544 2556666643
No 16
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=83.57 E-value=9.8 Score=29.78 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=39.2
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC--CH
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP--NA 83 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d--d~ 83 (123)
.-++..||++|. ++|..|+-|. ++ ..+|+|..+..+.=.......+.+.+. ....+.-.. ++
T Consensus 245 ~~~l~~ad~~v~-~~g~~~l~Ea---~~------~g~Pvv~~~~~~~~~~~~~~~~~i~~~------~~G~~~~~~~~~~ 308 (348)
T TIGR01133 245 AAAYAAADLVIS-RAGASTVAEL---AA------AGVPAILIPYPYAADDQYYNAKFLEDL------GAGLVIRQKELLP 308 (348)
T ss_pred HHHHHhCCEEEE-CCChhHHHHH---HH------cCCCEEEeeCCCCccchhhHHHHHHHC------CCEEEEecccCCH
Confidence 346788999886 5554555554 43 489999987643211111101122221 112222233 48
Q ss_pred HHHHHHHHhhc
Q 033246 84 KELVQKLEEYV 94 (123)
Q Consensus 84 ee~l~~l~~~~ 94 (123)
+++.+.+.+..
T Consensus 309 ~~l~~~i~~ll 319 (348)
T TIGR01133 309 EKLLEALLKLL 319 (348)
T ss_pred HHHHHHHHHHH
Confidence 88888887764
No 17
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=80.40 E-value=11 Score=30.30 Aligned_cols=45 Identities=31% Similarity=0.627 Sum_probs=30.5
Q ss_pred cCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHH-----HHHHHHHcC
Q 033246 18 LPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN-----FIDKAVDDG 67 (123)
Q Consensus 18 lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~-----~l~~~~~~g 67 (123)
|-+|+ |++.+++.+.-.+ +.++.|++++ +||++++. +++.+.+.|
T Consensus 70 L~~g~-~~~~~~~~~~~~r-~~~~~p~vlm---~Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 70 LKQGI-NLNKILSILSEVN-GEIKAPIVIF---TYYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred HHcCC-CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhCHHHHHHHHHHcC
Confidence 33444 5777777776554 3467899887 49998766 577777665
No 18
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=80.08 E-value=16 Score=28.60 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=39.3
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCc-cHHHHHHHHHHHHcCCCCcccccceEEcC--C
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGY-YNSLLNFIDKAVDDGFISPSQRSILVSAP--N 82 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf-~~~l~~~l~~~~~~gfi~~~~~~~i~~~d--d 82 (123)
..++..||++|. ++|.+| +.|+++. .+|++.....+. .+.-...-+.+.+.| ...+.-.+ |
T Consensus 247 ~~~l~~ad~~v~-~sg~~t---~~Eam~~------G~Pvv~~~~~~~~~~~~~~~~~~l~~~g------~g~~v~~~~~~ 310 (350)
T cd03785 247 AAAYAAADLVIS-RAGAST---VAELAAL------GLPAILIPLPYAADDHQTANARALVKAG------AAVLIPQEELT 310 (350)
T ss_pred HHHHHhcCEEEE-CCCHhH---HHHHHHh------CCCEEEeecCCCCCCcHHHhHHHHHhCC------CEEEEecCCCC
Confidence 346778999885 555566 4555654 899998764321 111000012233322 11222222 7
Q ss_pred HHHHHHHHHhhc
Q 033246 83 AKELVQKLEEYV 94 (123)
Q Consensus 83 ~ee~l~~l~~~~ 94 (123)
++++.+.|....
T Consensus 311 ~~~l~~~i~~ll 322 (350)
T cd03785 311 PERLAAALLELL 322 (350)
T ss_pred HHHHHHHHHHHh
Confidence 888888887764
No 19
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=79.63 E-value=8.5 Score=29.12 Aligned_cols=85 Identities=22% Similarity=0.258 Sum_probs=47.8
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHH-hCCCCCcEEEEeCCCccHH------HHHHHH-HHHHcCCCCcccccceE
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQ-LGIHDKPVGLINVDGYYNS------LLNFID-KAVDDGFISPSQRSILV 78 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~q-lg~~~kPiilln~~gf~~~------l~~~l~-~~~~~gfi~~~~~~~i~ 78 (123)
.+.+...+.|+|+|| .|...+++.+.-.. .++.-+.+.+++.+.+|-+ -..+++ ++.+..-|+++....+.
T Consensus 16 ~i~~~~~~~i~LsgG-stp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~ 94 (199)
T PF01182_consen 16 AIAERGRAVIALSGG-STPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLPIPPENIHPID 94 (199)
T ss_dssp HHHHCSSEEEEE--S-CTHHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSGGGGGGEETSS
T ss_pred HHHHCCCEEEEEcCC-HHHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCCCCcceEEeCC
Confidence 345778999999999 46667887776644 2233467999999888822 233333 23333223333333333
Q ss_pred E-cCCHHHHHHHHHh
Q 033246 79 S-APNAKELVQKLEE 92 (123)
Q Consensus 79 ~-~dd~ee~l~~l~~ 92 (123)
. .+++++..+..++
T Consensus 95 ~~~~~~~~~~~~y~~ 109 (199)
T PF01182_consen 95 GEADDPEEAAERYEQ 109 (199)
T ss_dssp TTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 2 3567766665544
No 20
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=79.43 E-value=4.1 Score=33.08 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=40.8
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHH
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 86 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~ 86 (123)
.++..||++| ..||.||+.|.. .+.+|++++-.. .+.. ...+.+.+.|.-.. +..-.-+++++
T Consensus 287 ~ll~~~~~~I-~hgG~~t~~Eal---------~~G~P~v~~p~~--~dq~-~~a~~l~~~g~g~~----l~~~~~~~~~l 349 (392)
T TIGR01426 287 EILKKADAFI-THGGMNSTMEAL---------FNGVPMVAVPQG--ADQP-MTARRIAELGLGRH----LPPEEVTAEKL 349 (392)
T ss_pred HHHhhCCEEE-ECCCchHHHHHH---------HhCCCEEecCCc--ccHH-HHHHHHHHCCCEEE----eccccCCHHHH
Confidence 3567788554 688999997765 348999998642 3322 23345555552200 00111246777
Q ss_pred HHHHHhhc
Q 033246 87 VQKLEEYV 94 (123)
Q Consensus 87 l~~l~~~~ 94 (123)
.+.+++..
T Consensus 350 ~~ai~~~l 357 (392)
T TIGR01426 350 REAVLAVL 357 (392)
T ss_pred HHHHHHHh
Confidence 77776653
No 21
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=78.66 E-value=12 Score=28.70 Aligned_cols=54 Identities=24% Similarity=0.256 Sum_probs=38.9
Q ss_pred HHHHhcCEEEEcCCc------hhhHHHHHHHHHHHHhCCCCCcEEEEeCC--CccHHHHHHHHHHHHc
Q 033246 7 EMARNSDCFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLINVD--GYYNSLLNFIDKAVDD 66 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG------~GTLdEl~evlt~~qlg~~~kPiilln~~--gf~~~l~~~l~~~~~~ 66 (123)
.+++.||++|+.==+ -||.-|+-.++.+ .||++.+..+ .|...+-..+..+..+
T Consensus 64 ~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al------gKPv~~~~~d~~~~~~r~~~~~~~~l~~ 125 (172)
T COG3613 64 KLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL------GKPVYAYRKDAANYASRLNAHLGEVLGE 125 (172)
T ss_pred HHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc------CCceEEEeecccchhhHHHHhHHHHhhc
Confidence 468899998887655 5899999999986 9999999875 2444444444344433
No 22
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.75 E-value=5.4 Score=32.48 Aligned_cols=52 Identities=29% Similarity=0.418 Sum_probs=36.2
Q ss_pred hcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC---CccHHH------HHHHHHHHHcCC
Q 033246 11 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD---GYYNSL------LNFIDKAVDDGF 68 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~---gf~~~l------~~~l~~~~~~gf 68 (123)
.+|.+|++ ||=||+-+....+. ..++|++-+|.. ||.... .+.++.+.+..|
T Consensus 57 ~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~~g~~ 117 (305)
T PRK02645 57 LIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQEDRY 117 (305)
T ss_pred CcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecCchhhcchHHHHHHHHcCCc
Confidence 35666666 99999999887663 358999999962 677653 345566565544
No 23
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=76.74 E-value=28 Score=27.63 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=41.2
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCC--ccHHHHHHHHHHHHcCCCCcccccceEEcCC-
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG--YYNSLLNFIDKAVDDGFISPSQRSILVSAPN- 82 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~g--f~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd- 82 (123)
.-++..||++|. ++|.+|+-| +++. .+|++.....+ ..+.... -+.+.+.| ...+.-.+|
T Consensus 247 ~~~~~~~d~~i~-~~g~~~~~E---a~~~------g~Pvv~~~~~~~~~~~~~~~-~~~i~~~~------~g~~~~~~~~ 309 (357)
T PRK00726 247 AAAYAAADLVIC-RAGASTVAE---LAAA------GLPAILVPLPHAADDHQTAN-ARALVDAG------AALLIPQSDL 309 (357)
T ss_pred HHHHHhCCEEEE-CCCHHHHHH---HHHh------CCCEEEecCCCCCcCcHHHH-HHHHHHCC------CEEEEEcccC
Confidence 456788999986 566677544 4543 89999986521 1222111 12344433 222222344
Q ss_pred -HHHHHHHHHhhcC
Q 033246 83 -AKELVQKLEEYVP 95 (123)
Q Consensus 83 -~ee~l~~l~~~~~ 95 (123)
++++.+.|+....
T Consensus 310 ~~~~l~~~i~~ll~ 323 (357)
T PRK00726 310 TPEKLAEKLLELLS 323 (357)
T ss_pred CHHHHHHHHHHHHc
Confidence 8888888877543
No 24
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=76.72 E-value=14 Score=29.56 Aligned_cols=32 Identities=28% Similarity=0.234 Sum_probs=23.3
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEe
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 48 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln 48 (123)
..+...||++|. |+|..|+ |.. . ..+|+|+.-
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea~---a------~G~PvI~~~ 287 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-ELA---L------LKVPMVVGY 287 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HHH---H------hCCCEEEEE
Confidence 456788998877 7888887 663 2 289998763
No 25
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=75.19 E-value=8.4 Score=32.48 Aligned_cols=48 Identities=29% Similarity=0.382 Sum_probs=33.3
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDG 67 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~g 67 (123)
.++..||+|| -.||.||+.|.. .+.+|++++-.. +|+...- ++..+.|
T Consensus 296 ~~l~~ad~vI-~hGG~gtt~eaL---------~~gvP~vv~P~~--~DQ~~nA-~rve~~G 343 (406)
T COG1819 296 ELLPRADAVI-HHGGAGTTSEAL---------YAGVPLVVIPDG--ADQPLNA-ERVEELG 343 (406)
T ss_pred HHhhhcCEEE-ecCCcchHHHHH---------HcCCCEEEecCC--cchhHHH-HHHHHcC
Confidence 4677888865 699999998876 358999999753 6664432 3444433
No 26
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=74.44 E-value=6.4 Score=27.50 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=24.0
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+|+.-||=||+.|+...+--........|+.++-.
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~ 86 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPL 86 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEeCC
Confidence 77789999999999877732211111268888854
No 27
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=74.37 E-value=7.3 Score=30.84 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
-.-++..||.+|. +|| +|+-|+. +. ++|++++-..
T Consensus 235 m~~lm~~aDl~Is-~~G-~T~~E~~---a~------g~P~i~i~~~ 269 (279)
T TIGR03590 235 MAELMNEADLAIG-AAG-STSWERC---CL------GLPSLAICLA 269 (279)
T ss_pred HHHHHHHCCEEEE-CCc-hHHHHHH---Hc------CCCEEEEEec
Confidence 3457889999999 666 8866655 33 8999998653
No 28
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=71.99 E-value=24 Score=27.80 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=38.1
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKE 85 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee 85 (123)
..++..||++|.=+| |..+|.+ ...+|+|.++..+-+. ..++.|. .+.+.+|+++
T Consensus 272 ~~l~~~ad~~v~~Sg--gi~~Ea~---------~~g~PvI~~~~~~~~~-------~~~~~g~-------~~~~~~~~~~ 326 (363)
T cd03786 272 LLLLKNADLVLTDSG--GIQEEAS---------FLGVPVLNLRDRTERP-------ETVESGT-------NVLVGTDPEA 326 (363)
T ss_pred HHHHHcCcEEEEcCc--cHHhhhh---------hcCCCEEeeCCCCccc-------hhhheee-------EEecCCCHHH
Confidence 356778999885555 5444433 2479999987432222 1233331 1222346899
Q ss_pred HHHHHHhhcC
Q 033246 86 LVQKLEEYVP 95 (123)
Q Consensus 86 ~l~~l~~~~~ 95 (123)
+.+.+.+...
T Consensus 327 i~~~i~~ll~ 336 (363)
T cd03786 327 ILAAIEKLLS 336 (363)
T ss_pred HHHHHHHHhc
Confidence 9888887654
No 29
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=71.46 E-value=5.6 Score=31.02 Aligned_cols=38 Identities=29% Similarity=0.535 Sum_probs=30.7
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHH
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNS 55 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~ 55 (123)
.-+++.||++|..-+..| +|++. ++||+++++.. ||+.
T Consensus 194 ~~Ll~~s~~VvtinStvG-----lEAll------~gkpVi~~G~~-~Y~~ 231 (269)
T PF05159_consen 194 YELLEQSDAVVTINSTVG-----LEALL------HGKPVIVFGRA-FYAG 231 (269)
T ss_pred HHHHHhCCEEEEECCHHH-----HHHHH------cCCceEEecCc-ccCC
Confidence 357889999999999888 56664 49999999875 7774
No 30
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=71.15 E-value=13 Score=28.06 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=51.9
Q ss_pred hcCEEEEcCCchhhHHHHHHHH-----HHH--HhCCCCCcEEEEeCCCccHH-HHHHHHHHHHcCC--CCcccccceEEc
Q 033246 11 NSDCFIALPGGYGTLEELLEVI-----TWA--QLGIHDKPVGLINVDGYYNS-LLNFIDKAVDDGF--ISPSQRSILVSA 80 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdEl~evl-----t~~--qlg~~~kPiilln~~gf~~~-l~~~l~~~~~~gf--i~~~~~~~i~~~ 80 (123)
.+|++||.|=-.+|+.-+..=+ +.. ..=..++|+++.-.+.+..+ -.+-++.+.+.|+ +++. ...+.--
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P~-~g~~~~p 153 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPPM-PAFYTRP 153 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECCC-CcccCCC
Confidence 5899999999999998876321 110 11124799999987544433 2333456777773 4443 3445556
Q ss_pred CCHHHHHHHHHh
Q 033246 81 PNAKELVQKLEE 92 (123)
Q Consensus 81 dd~ee~l~~l~~ 92 (123)
.+++|+++++..
T Consensus 154 ~~~~~~~~~i~~ 165 (181)
T TIGR00421 154 KSVEDMIDFIVG 165 (181)
T ss_pred CCHHHHHHHHHH
Confidence 899997777755
No 31
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=70.99 E-value=24 Score=26.55 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=52.1
Q ss_pred HhcCEEEEcCCchhhHHHHHHHH-----HHHHhC-CCCCcEEEEeC--CCccHH--HHHHHHHHHHcC--CCCcccc---
Q 033246 10 RNSDCFIALPGGYGTLEELLEVI-----TWAQLG-IHDKPVGLINV--DGYYNS--LLNFIDKAVDDG--FISPSQR--- 74 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evl-----t~~qlg-~~~kPiilln~--~gf~~~--l~~~l~~~~~~g--fi~~~~~--- 74 (123)
..+|++|+.|=..+|+.-+..=+ +..-+- ..++|+++.-. ...|+. ..+.++.+.+.| +++|...
T Consensus 75 ~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la 154 (177)
T TIGR02113 75 KKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLA 154 (177)
T ss_pred hhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCccc
Confidence 46899999999999998776322 111111 23789999852 236653 445567777777 4455542
Q ss_pred ---cceEEcCCHHHHHHHHHhh
Q 033246 75 ---SILVSAPNAKELVQKLEEY 93 (123)
Q Consensus 75 ---~~i~~~dd~ee~l~~l~~~ 93 (123)
.-.--..+|+++++.++++
T Consensus 155 ~g~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 155 CGDYGRGALADLDDILQTIKEI 176 (177)
T ss_pred CCCccccCCCCHHHHHHHHHHh
Confidence 2222345678888877654
No 32
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=70.43 E-value=25 Score=28.81 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=40.4
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCc---cHHHHHHHHHHHHcCCCCcccccceEEcCC
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGY---YNSLLNFIDKAVDDGFISPSQRSILVSAPN 82 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf---~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd 82 (123)
..++..||++|.-+ |.+|+.|+. ...+|++++-.... -+...+ .+.+.+.|....-..+. -+
T Consensus 247 ~~~~~~adlvIsr~-G~~t~~E~~---------~~g~P~I~iP~~~~~~~~~Q~~N-a~~l~~~g~~~~l~~~~----~~ 311 (352)
T PRK12446 247 PDILAITDFVISRA-GSNAIFEFL---------TLQKPMLLIPLSKFASRGDQILN-AESFERQGYASVLYEED----VT 311 (352)
T ss_pred HHHHHhCCEEEECC-ChhHHHHHH---------HcCCCEEEEcCCCCCCCchHHHH-HHHHHHCCCEEEcchhc----CC
Confidence 35678899766655 456777766 24899999942111 123322 35566666332111111 14
Q ss_pred HHHHHHHHHhh
Q 033246 83 AKELVQKLEEY 93 (123)
Q Consensus 83 ~ee~l~~l~~~ 93 (123)
++.+.+.+.+.
T Consensus 312 ~~~l~~~l~~l 322 (352)
T PRK12446 312 VNSLIKHVEEL 322 (352)
T ss_pred HHHHHHHHHHH
Confidence 67777766665
No 33
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=70.21 E-value=30 Score=26.53 Aligned_cols=44 Identities=25% Similarity=0.272 Sum_probs=31.5
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCcc
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYY 53 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~ 53 (123)
+.+...+.|+++||- |...+++.+.-.. .+.=+.+.+++.+.+|
T Consensus 19 i~~~~~~~l~lsGGs-tp~~~y~~L~~~~-~i~w~~v~~f~~DEr~ 62 (219)
T cd01400 19 IAKRGRFSLALSGGS-TPKPLYELLAAAP-ALDWSKVHVFLGDERC 62 (219)
T ss_pred HHhcCeEEEEECCCc-cHHHHHHHhcccc-CCCCceEEEEEeeccc
Confidence 445688999999994 6668888886543 2333677777777777
No 34
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=69.70 E-value=24 Score=28.91 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=41.5
Q ss_pred HHHHHhcCEEEEcC---CchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC
Q 033246 6 AEMARNSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 82 (123)
Q Consensus 6 ~~m~~~sDa~I~lP---GG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd 82 (123)
..+...||++++.| .|.|.- +.|+++. .+|||.-...+-+..+.+ .+.+.|++ ..++|
T Consensus 314 ~~~y~~aDi~~v~~S~~e~~g~~--~lEAma~------G~PVI~g~~~~~~~e~~~---~~~~~g~~--------~~~~d 374 (425)
T PRK05749 314 GLLYAIADIAFVGGSLVKRGGHN--PLEPAAF------GVPVISGPHTFNFKEIFE---RLLQAGAA--------IQVED 374 (425)
T ss_pred HHHHHhCCEEEECCCcCCCCCCC--HHHHHHh------CCCEEECCCccCHHHHHH---HHHHCCCe--------EEECC
Confidence 44568899877642 123433 6788875 999997432222333333 33344433 45778
Q ss_pred HHHHHHHHHhhc
Q 033246 83 AKELVQKLEEYV 94 (123)
Q Consensus 83 ~ee~l~~l~~~~ 94 (123)
++++.+.|....
T Consensus 375 ~~~La~~l~~ll 386 (425)
T PRK05749 375 AEDLAKAVTYLL 386 (425)
T ss_pred HHHHHHHHHHHh
Confidence 888888887654
No 35
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=68.96 E-value=41 Score=27.90 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=43.4
Q ss_pred cCEE-EEcCCchhhHHHHHHHHHHHHhCC-CCCcEEEEeCCC-ccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHH
Q 033246 12 SDCF-IALPGGYGTLEELLEVITWAQLGI-HDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQ 88 (123)
Q Consensus 12 sDa~-I~lPGG~GTLdEl~evlt~~qlg~-~~kPiilln~~g-f~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l~ 88 (123)
.|++ |.++||+...+++.+.+.-..-.. .+||+++. ..| ..+.... .+.+.|+ .+.+.++|++++.
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~-~~g~~~~~~~~---~L~~~Gi-------~ip~f~~pe~A~~ 379 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVR-LEGTNVELGKK---ILAESGL-------NIIAADTLDDAAQ 379 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHCCC-------CceecCCHHHHHH
Confidence 4664 456788888888887776443222 68999554 444 2222222 2333331 2468899999999
Q ss_pred HHHhh
Q 033246 89 KLEEY 93 (123)
Q Consensus 89 ~l~~~ 93 (123)
.+.+.
T Consensus 380 al~~~ 384 (388)
T PRK00696 380 KAVEA 384 (388)
T ss_pred HHHHH
Confidence 88754
No 36
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=68.48 E-value=34 Score=27.99 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=41.6
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCccc
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQ 73 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~ 73 (123)
++..||++||-+-..-=+-| +++ ..|||.++...+--..+-.+++.|.+.|.+.+-.
T Consensus 225 ~La~ad~i~VT~DSvSMvsE---A~~------tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~ 281 (311)
T PF06258_consen 225 FLAAADAIVVTEDSVSMVSE---AAA------TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFT 281 (311)
T ss_pred HHHhCCEEEEcCccHHHHHH---HHH------cCCCEEEecCCCcchHHHHHHHHHHHCCCEEECC
Confidence 67889999997766554444 333 3799999999874555667778899999775543
No 37
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=68.31 E-value=32 Score=27.95 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHhCCCCCcEEEEeCCCccHH-----HHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHh
Q 033246 24 TLEELLEVITWAQLGIHDKPVGLINVDGYYNS-----LLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEE 92 (123)
Q Consensus 24 TLdEl~evlt~~qlg~~~kPiilln~~gf~~~-----l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l~~l~~ 92 (123)
|++..++.+.-..-.-...|++|+. ||++ +..|++.+.+.| .+-+.+.|=|-|--+.+..
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~---Y~Npi~~~Gie~F~~~~~~~G------vdGlivpDLP~ee~~~~~~ 141 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMT---YYNPIFNYGIEKFLRRAKEAG------VDGLLVPDLPPEESDELLK 141 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEE---eccHHHHhhHHHHHHHHHHcC------CCEEEeCCCChHHHHHHHH
Confidence 6677777776544444577999995 8877 445666676666 4566666665554444433
No 38
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=68.02 E-value=41 Score=25.71 Aligned_cols=71 Identities=18% Similarity=0.306 Sum_probs=43.1
Q ss_pred HHHHHHHhcCEEEEcC----CchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEE
Q 033246 4 RKAEMARNSDCFIALP----GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 79 (123)
Q Consensus 4 RK~~m~~~sDa~I~lP----GG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~ 79 (123)
....+...||++|... .|+|.- +.|+++. .+|++..+..+.-+.+.. . .....++-
T Consensus 256 ~~~~~~~~ad~~i~ps~~~~e~~g~~--~~Ea~~~------g~Pvi~~~~~~~~~~i~~-------~-----~~~g~~~~ 315 (357)
T cd03795 256 EKAALLAACDVFVFPSVERSEAFGIV--LLEAMAF------GKPVISTEIGTGGSYVNL-------H-----GVTGLVVP 315 (357)
T ss_pred HHHHHHHhCCEEEeCCcccccccchH--HHHHHHc------CCCEEecCCCCchhHHhh-------C-----CCceEEeC
Confidence 3456778899987642 466642 5667754 899999876543332211 0 11222334
Q ss_pred cCCHHHHHHHHHhhc
Q 033246 80 APNAKELVQKLEEYV 94 (123)
Q Consensus 80 ~dd~ee~l~~l~~~~ 94 (123)
.+|++++.+.|.+..
T Consensus 316 ~~d~~~~~~~i~~l~ 330 (357)
T cd03795 316 PGDPAALAEAIRRLL 330 (357)
T ss_pred CCCHHHHHHHHHHHH
Confidence 568888888887754
No 39
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=67.43 E-value=15 Score=28.04 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=53.5
Q ss_pred hcCEEEEcCCchhhHHHHHHHHHHH-------HhCCCCCcEEEEeCCCccHH--HHHHHHHHHHcCC-CCcccccceEEc
Q 033246 11 NSDCFIALPGGYGTLEELLEVITWA-------QLGIHDKPVGLINVDGYYNS--LLNFIDKAVDDGF-ISPSQRSILVSA 80 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdEl~evlt~~-------qlg~~~kPiilln~~gf~~~--l~~~l~~~~~~gf-i~~~~~~~i~~~ 80 (123)
.+|++||.|=-.+|+.-+..=++-. ..-..++|+++.-.+ .|.. ..+.++.+.+.|+ +-+.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~~-M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVRE-TPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEecc-ccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 5899999999999998775322111 111247999999865 6653 3444667777775 233333555556
Q ss_pred CCHHHHHHHHHh
Q 033246 81 PNAKELVQKLEE 92 (123)
Q Consensus 81 dd~ee~l~~l~~ 92 (123)
.+++++++++-.
T Consensus 157 ~~~~~~~~~~v~ 168 (185)
T PRK06029 157 QTLEDMVDQTVG 168 (185)
T ss_pred CCHHHHHHHHHH
Confidence 889999888755
No 40
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=67.29 E-value=5.4 Score=27.15 Aligned_cols=64 Identities=14% Similarity=0.278 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEc-----CCHHHHHHHHHhhcCCCC
Q 033246 24 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA-----PNAKELVQKLEEYVPLHD 98 (123)
Q Consensus 24 TLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~-----dd~ee~l~~l~~~~~~~~ 98 (123)
|=+|+.+.+.-.--.. +..+.+.+.++..+.++++- |+-.++|++- ++|+.+++.+++|+...+
T Consensus 11 TE~EFl~~v~~i~~~~-------~~~ee~~d~lv~hF~~iteH----P~gSDLIfYP~~~~edsPegIv~~vKeWRa~nG 79 (85)
T PF01320_consen 11 TESEFLEFVKEIFNAE-------LKTEEEHDELVDHFEKITEH----PDGSDLIFYPEDGREDSPEGIVKEVKEWRASNG 79 (85)
T ss_dssp BHHHHHHHHHHHHHTC-------SSSCHHHHHHHHHHHHHH------TTTTHHHHS-STTSTSSHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHcCCC----CCCCceeeeCCCCCCCCHHHHHHHHHHHHHHcC
Confidence 4456666654322211 44566888999988887753 5666777764 589999999999976544
No 41
>PLN02591 tryptophan synthase
Probab=67.18 E-value=38 Score=27.03 Aligned_cols=40 Identities=25% Similarity=0.510 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHH-----HHHHHHHcC
Q 033246 24 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN-----FIDKAVDDG 67 (123)
Q Consensus 24 TLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~-----~l~~~~~~g 67 (123)
|++.+|+.+.-.+ ...+.|++++ +||++++. |++.+.+.|
T Consensus 62 ~~~~~~~~~~~~r-~~~~~p~ilm---~Y~N~i~~~G~~~F~~~~~~aG 106 (250)
T PLN02591 62 TLDSVISMLKEVA-PQLSCPIVLF---TYYNPILKRGIDKFMATIKEAG 106 (250)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEE---ecccHHHHhHHHHHHHHHHHcC
Confidence 6778888886544 3457899988 49887655 677777766
No 42
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=67.00 E-value=14 Score=24.06 Aligned_cols=33 Identities=36% Similarity=0.638 Sum_probs=23.9
Q ss_pred CEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCC
Q 033246 13 DCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG 51 (123)
Q Consensus 13 Da~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~g 51 (123)
=-+|.+| +|++|++.+.+ .++|.. |--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 3488999 69999999886 577764 555566543
No 43
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=66.15 E-value=33 Score=26.85 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=44.9
Q ss_pred HHHHHHHhcCEEEEcC-CchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC
Q 033246 4 RKAEMARNSDCFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 82 (123)
Q Consensus 4 RK~~m~~~sDa~I~lP-GG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd 82 (123)
...-+...||++|... -|+|.. ++|+++. .+||+..+..| ...+ +.......+.-.+|
T Consensus 254 ~~~~~~~~ad~~v~ps~e~~g~~--~~Eama~------G~Pvi~~~~~~-~~e~------------i~~~~~G~~~~~~~ 312 (351)
T cd03804 254 ELRDLYARARAFLFPAEEDFGIV--PVEAMAS------GTPVIAYGKGG-ALET------------VIDGVTGILFEEQT 312 (351)
T ss_pred HHHHHHHhCCEEEECCcCCCCch--HHHHHHc------CCCEEEeCCCC-Ccce------------eeCCCCEEEeCCCC
Confidence 3456788899988533 566665 4677764 89999988653 2221 11122333444578
Q ss_pred HHHHHHHHHhhcC
Q 033246 83 AKELVQKLEEYVP 95 (123)
Q Consensus 83 ~ee~l~~l~~~~~ 95 (123)
++++.+.|.....
T Consensus 313 ~~~la~~i~~l~~ 325 (351)
T cd03804 313 VESLAAAVERFEK 325 (351)
T ss_pred HHHHHHHHHHHHh
Confidence 9988888877643
No 44
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=64.36 E-value=8.1 Score=26.81 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=24.9
Q ss_pred HHhcCE--EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 9 ARNSDC--FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 9 ~~~sDa--~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
.+.++. .|+.-||=||+.|+...+.-..... ..|+.++-.
T Consensus 49 ~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~~~~-~~~l~iiP~ 90 (130)
T PF00781_consen 49 LALDDYPDVIVVVGGDGTLNEVVNGLMGSDRED-KPPLGIIPA 90 (130)
T ss_dssp HHHTTS-SEEEEEESHHHHHHHHHHHCTSTSSS---EEEEEE-
T ss_pred HhhccCccEEEEEcCccHHHHHHHHHhhcCCCc-cceEEEecC
Confidence 445554 7888899999999988773211111 237777754
No 45
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=64.33 E-value=50 Score=24.89 Aligned_cols=86 Identities=17% Similarity=0.271 Sum_probs=55.0
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHH-----HHhC-CCCCcEEEEeC--CCccHH--HHHHHHHHHHcCC--CCccccc-
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITW-----AQLG-IHDKPVGLINV--DGYYNS--LLNFIDKAVDDGF--ISPSQRS- 75 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~-----~qlg-~~~kPiilln~--~gf~~~--l~~~l~~~~~~gf--i~~~~~~- 75 (123)
...+|++||.|=-.+|+.-+..=++- .-+. ..++|+++.-. ...|.. ..+.++++.+.|+ +++....
T Consensus 75 ~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~l 154 (182)
T PRK07313 75 AKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLL 154 (182)
T ss_pred ccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCcc
Confidence 35689999999999999876531111 1111 24799999864 135554 3445677778773 3444222
Q ss_pred -----ceEEcCCHHHHHHHHHhhc
Q 033246 76 -----ILVSAPNAKELVQKLEEYV 94 (123)
Q Consensus 76 -----~i~~~dd~ee~l~~l~~~~ 94 (123)
-..--.+++++++++.++.
T Consensus 155 a~~~~g~g~~~~~~~i~~~v~~~~ 178 (182)
T PRK07313 155 ACGDEGYGALADIETILETIENTL 178 (182)
T ss_pred ccCCccCCCCCCHHHHHHHHHHHh
Confidence 1344678999999998864
No 46
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=63.88 E-value=16 Score=30.15 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=37.4
Q ss_pred hcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC-----CCccHHHHHHHHH
Q 033246 11 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV-----DGYYNSLLNFIDK 62 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~-----~gf~~~l~~~l~~ 62 (123)
..|+|||+= |.=||+|-...+++.--+ .||||+.+. ....|...+++..
T Consensus 77 ~~dG~VVtH-GTDTme~TA~~Ls~~l~~--~kPVVlTGsmrp~~~~~sDg~~NL~~A 130 (336)
T TIGR00519 77 DYDGFVITH-GTDTMAYTAAALSFMLET--PKPVVFTGAQRSSDRPSSDAALNLLCA 130 (336)
T ss_pred cCCeEEEcc-CCchHHHHHHHHHHHcCC--CCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 489999997 589999999999874433 999999986 2356666666654
No 47
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=63.77 E-value=8 Score=30.05 Aligned_cols=14 Identities=36% Similarity=0.940 Sum_probs=10.9
Q ss_pred EEEcCCchhhHHHH
Q 033246 15 FIALPGGYGTLEEL 28 (123)
Q Consensus 15 ~I~lPGG~GTLdEl 28 (123)
.|++|||.|.++-+
T Consensus 88 alviPGG~g~~~~l 101 (217)
T PRK11780 88 ALIVPGGFGAAKNL 101 (217)
T ss_pred EEEECCCCchhhhh
Confidence 67899999986443
No 48
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=63.54 E-value=15 Score=30.03 Aligned_cols=49 Identities=27% Similarity=0.306 Sum_probs=35.9
Q ss_pred hcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC-----CCccHHHHHHHHH
Q 033246 11 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV-----DGYYNSLLNFIDK 62 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~-----~gf~~~l~~~l~~ 62 (123)
..|+|||.= |.=||+|....+++.--+ .||||+.+. ....|...++...
T Consensus 78 ~~dGiVVtH-GTDTmeeTA~~L~~~l~~--~kPVVlTGA~rp~~~~~sDg~~NL~~A 131 (323)
T cd00411 78 SYDGFVITH-GTDTMEETAYFLSLTLEN--DKPVVLTGSMRPSTELSADGPLNLYNA 131 (323)
T ss_pred hcCcEEEEc-CcccHHHHHHHHHHHhcC--CCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 378999886 589999999999874333 999999976 2245556665554
No 49
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=63.47 E-value=33 Score=28.37 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=40.1
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCC-------Ccc-cccceEE
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFI-------SPS-QRSILVS 79 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi-------~~~-~~~~i~~ 79 (123)
.+..||++|+-. |..|+ |++ . ..+|+|+.-.-+.+.-.+. +++++-.++ +.. ..+.+.-
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~---a------~G~P~Vv~yk~~pl~~~~~--~~~~~~~~~~~~nil~~~~~~pel~q~ 330 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAA---L------IKTPMVVGYRMKPLTFLIA--RRLVKTDYISLPNILANRLLVPELLQE 330 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHH---H------cCCCEEEEEcCCHHHHHHH--HHHHcCCeeeccHHhcCCccchhhcCC
Confidence 567888776655 67787 655 2 4899888754334443322 233322222 111 1222333
Q ss_pred cCCHHHHHHHHHhhc
Q 033246 80 APNAKELVQKLEEYV 94 (123)
Q Consensus 80 ~dd~ee~l~~l~~~~ 94 (123)
.-+++.+.+.+.+..
T Consensus 331 ~~~~~~l~~~~~~ll 345 (385)
T TIGR00215 331 ECTPHPLAIALLLLL 345 (385)
T ss_pred CCCHHHHHHHHHHHh
Confidence 346888888777764
No 50
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=62.81 E-value=49 Score=23.10 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=14.8
Q ss_pred CEEEEcCCchh----------hHHHHHHHH
Q 033246 13 DCFIALPGGYG----------TLEELLEVI 32 (123)
Q Consensus 13 Da~I~lPGG~G----------TLdEl~evl 32 (123)
|++|||.||.. -++.-.+.+
T Consensus 1 d~IvVLG~~~~~~~~~~~~~~R~~~a~~l~ 30 (150)
T cd06259 1 DAIVVLGGGVNGDGPSPILAERLDAAAELY 30 (150)
T ss_pred CEEEEeCCccCCCCCChHHHHHHHHHHHHH
Confidence 78999999988 555555555
No 51
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=62.59 E-value=7 Score=27.73 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=21.9
Q ss_pred EEEcCCchhhHHHHH-H---HHHHHHhC-CCCCcEEEEeCC
Q 033246 15 FIALPGGYGTLEELL-E---VITWAQLG-IHDKPVGLINVD 50 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~-e---vlt~~qlg-~~~kPiilln~~ 50 (123)
.|++|||.|..+-+. . +..+.+-- .+.|||.-+...
T Consensus 40 alilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g 80 (147)
T PF01965_consen 40 ALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHG 80 (147)
T ss_dssp EEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTC
T ss_pred EEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCC
Confidence 688999999777776 2 22222221 358999988653
No 52
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=61.43 E-value=39 Score=25.46 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=42.5
Q ss_pred HHHHHHHhcCEEEEcCC-----chhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceE
Q 033246 4 RKAEMARNSDCFIALPG-----GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78 (123)
Q Consensus 4 RK~~m~~~sDa~I~lPG-----G~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~ 78 (123)
...-++..||++|.... |.|.-.=+.|+++. ++|+|..+..+.-+ .+. + .....+.
T Consensus 287 ~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~------G~pvi~~~~~~~~~-~~~-------~-----~~~g~~~ 347 (394)
T cd03794 287 ELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAA------GKPVLASVDGESAE-LVE-------E-----AGAGLVV 347 (394)
T ss_pred HHHHHHHhhCeeEEeccCcccccccCchHHHHHHHC------CCcEEEecCCCchh-hhc-------c-----CCcceEe
Confidence 34456778998875433 33334456777764 89999988754322 211 1 1122233
Q ss_pred EcCCHHHHHHHHHhhc
Q 033246 79 SAPNAKELVQKLEEYV 94 (123)
Q Consensus 79 ~~dd~ee~l~~l~~~~ 94 (123)
-.+|++++.+.|.+..
T Consensus 348 ~~~~~~~l~~~i~~~~ 363 (394)
T cd03794 348 PPGDPEALAAAILELL 363 (394)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3457888888887764
No 53
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=60.79 E-value=36 Score=27.35 Aligned_cols=33 Identities=33% Similarity=0.606 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHH
Q 033246 24 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF 59 (123)
Q Consensus 24 TLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~ 59 (123)
||+-++|.+....-.--..||+|+ |||+|++..
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhh
Confidence 678888877654443346899999 599998764
No 54
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=60.54 E-value=11 Score=31.01 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=33.6
Q ss_pred CccHHHHHHHHHHHHcCCCCcccccce---EEcCCHHHHHHHHHhh
Q 033246 51 GYYNSLLNFIDKAVDDGFISPSQRSIL---VSAPNAKELVQKLEEY 93 (123)
Q Consensus 51 gf~~~l~~~l~~~~~~gfi~~~~~~~i---~~~dd~ee~l~~l~~~ 93 (123)
.+|+-+-+-+..|+.+|.|+++..+.+ .+..+++|+.+.|++.
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~ 243 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEE 243 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcC
Confidence 468888888899999999999988854 7889999999999874
No 55
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=60.18 E-value=47 Score=26.62 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=27.9
Q ss_pred HHHHHHHhcCEEEEc--CCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 4 RKAEMARNSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 4 RK~~m~~~sDa~I~l--PGG~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
....++..||++|.- ..|+|.- ++|+++. .+||+..+..
T Consensus 295 ~~~~~l~~ad~~v~ps~~E~~g~~--~lEAma~------G~Pvi~~~~~ 335 (405)
T TIGR03449 295 ELVHVYRAADVVAVPSYNESFGLV--AMEAQAC------GTPVVAARVG 335 (405)
T ss_pred HHHHHHHhCCEEEECCCCCCcChH--HHHHHHc------CCCEEEecCC
Confidence 445678899998753 3566653 6777764 8999998864
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=59.93 E-value=41 Score=24.99 Aligned_cols=69 Identities=23% Similarity=0.329 Sum_probs=40.1
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHH
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 86 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~ 86 (123)
-+...||++|.-...-|.--=++|+++ .++|++..+..+ ...++. ......+.-.+|++++
T Consensus 259 ~~~~~adi~i~ps~~e~~~~~~~Ea~~------~G~Pvi~s~~~~-~~~~i~------------~~~~g~~~~~~~~~~~ 319 (359)
T cd03808 259 ELLAAADVFVLPSYREGLPRVLLEAMA------MGRPVIATDVPG-CREAVI------------DGVNGFLVPPGDAEAL 319 (359)
T ss_pred HHHHhccEEEecCcccCcchHHHHHHH------cCCCEEEecCCC-chhhhh------------cCcceEEECCCCHHHH
Confidence 457789987654332222333667775 489999887643 232221 1122333445678888
Q ss_pred HHHHHhhc
Q 033246 87 VQKLEEYV 94 (123)
Q Consensus 87 l~~l~~~~ 94 (123)
.+.+....
T Consensus 320 ~~~i~~l~ 327 (359)
T cd03808 320 ADAIERLI 327 (359)
T ss_pred HHHHHHHH
Confidence 88887753
No 57
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=59.48 E-value=48 Score=24.96 Aligned_cols=70 Identities=19% Similarity=0.362 Sum_probs=41.8
Q ss_pred HHHHHHhcCEEEEc---CCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC
Q 033246 5 KAEMARNSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 81 (123)
Q Consensus 5 K~~m~~~sDa~I~l---PGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d 81 (123)
..-+...||++|.- ..|+|.- ++|+++ .++|+|..+..+ ...++ .. .....+.-.+
T Consensus 256 ~~~~~~~ad~~i~ps~~~e~~~~~--~~Ea~a------~G~Pvi~~~~~~-~~e~i-------~~-----~~~g~~~~~~ 314 (359)
T cd03823 256 IDDFYAEIDVLVVPSIWPENFPLV--IREALA------AGVPVIASDIGG-MAELV-------RD-----GVNGLLFPPG 314 (359)
T ss_pred HHHHHHhCCEEEEcCcccCCCChH--HHHHHH------CCCCEEECCCCC-HHHHh-------cC-----CCcEEEECCC
Confidence 34567889988753 2455543 667775 389999987643 22222 11 1123334455
Q ss_pred CHHHHHHHHHhhcC
Q 033246 82 NAKELVQKLEEYVP 95 (123)
Q Consensus 82 d~ee~l~~l~~~~~ 95 (123)
|++++.+.+.....
T Consensus 315 d~~~l~~~i~~l~~ 328 (359)
T cd03823 315 DAEDLAAALERLID 328 (359)
T ss_pred CHHHHHHHHHHHHh
Confidence 68888888877643
No 58
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=59.35 E-value=80 Score=24.44 Aligned_cols=42 Identities=26% Similarity=0.290 Sum_probs=30.8
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCcc
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYY 53 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~ 53 (123)
.+...+.|+|+|| .|...+++.++-. ...=..+.+++.+.+|
T Consensus 25 ~~~~~~~lalsGG-stp~~~y~~L~~~--~i~w~~v~~f~~DER~ 66 (233)
T TIGR01198 25 AERGQFSLALSGG-RSPIALLEALAAQ--PLDWSRIHLFLGDERY 66 (233)
T ss_pred HhcCcEEEEECCC-ccHHHHHHHHhhC--CCCcceEEEEEecccc
Confidence 4567889999999 5888899888743 3333567777777777
No 59
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=59.21 E-value=41 Score=25.93 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=36.1
Q ss_pred chHHHHHHHhcCEEEEcC--CchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcC
Q 033246 2 HQRKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDG 67 (123)
Q Consensus 2 ~eRK~~m~~~sDa~I~lP--GG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~g 67 (123)
.+|.+++..+||+.|+.- =.=||+.-+-.++.+ +|||+.+... .+++..+.-..++++|
T Consensus 146 ~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~~------gr~v~~vp~~-~~~~~~~G~~~Li~~G 206 (212)
T PF02481_consen 146 PERNRIIAALSDAVVVVEAGEKSGTLHTARFALEQ------GRPVFAVPGP-IDDPNSEGNNELIKEG 206 (212)
T ss_dssp HHHHHHHHHH-S-EEE----TT-THHHHHHHHHHH------T--EEE-----TT-GGGHHHHHHHHTT
T ss_pred hHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHHc------CCeEEEEeCC-CCCcccHHHHHHHHcC
Confidence 479999999999988875 345888877777765 7999998543 6666666656677776
No 60
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=58.40 E-value=36 Score=26.88 Aligned_cols=68 Identities=25% Similarity=0.361 Sum_probs=41.5
Q ss_pred HHHHHhcCEEEEc--CCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCH
Q 033246 6 AEMARNSDCFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNA 83 (123)
Q Consensus 6 ~~m~~~sDa~I~l--PGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ 83 (123)
..++..||++|.. ..|+|.. ++|+++. .+||+..+..| ...++ .+ .....+.-.+|+
T Consensus 267 ~~~~~~adi~v~pS~~Eg~~~~--~lEAma~------G~Pvv~s~~~g-~~e~i-------~~-----~~~g~~~~~~d~ 325 (374)
T TIGR03088 267 PALMQALDLFVLPSLAEGISNT--ILEAMAS------GLPVIATAVGG-NPELV-------QH-----GVTGALVPPGDA 325 (374)
T ss_pred HHHHHhcCEEEeccccccCchH--HHHHHHc------CCCEEEcCCCC-cHHHh-------cC-----CCceEEeCCCCH
Confidence 3456789987742 3455544 6777764 89999988754 33222 11 122333445788
Q ss_pred HHHHHHHHhhc
Q 033246 84 KELVQKLEEYV 94 (123)
Q Consensus 84 ee~l~~l~~~~ 94 (123)
+++.+.+....
T Consensus 326 ~~la~~i~~l~ 336 (374)
T TIGR03088 326 VALARALQPYV 336 (374)
T ss_pred HHHHHHHHHHH
Confidence 88888887653
No 61
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=58.33 E-value=37 Score=25.78 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=40.0
Q ss_pred HHHHHHHhcCEEEEcC--C--chhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEE
Q 033246 4 RKAEMARNSDCFIALP--G--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 79 (123)
Q Consensus 4 RK~~m~~~sDa~I~lP--G--G~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~ 79 (123)
....++..||++|.-- . |+|.. +.|+++. ++|++..+..+ .+.+. ......++-
T Consensus 260 ~~~~~~~~ad~~v~ps~~e~~~~~~~--~~Ea~a~------G~PvI~~~~~~-~~~i~-------------~~~~g~~~~ 317 (366)
T cd03822 260 ELPELFSAADVVVLPYRSADQTQSGV--LAYAIGF------GKPVISTPVGH-AEEVL-------------DGGTGLLVP 317 (366)
T ss_pred HHHHHHhhcCEEEecccccccccchH--HHHHHHc------CCCEEecCCCC-hheee-------------eCCCcEEEc
Confidence 3456778899987421 1 33322 4556653 89999887653 22211 112233344
Q ss_pred cCCHHHHHHHHHhhcC
Q 033246 80 APNAKELVQKLEEYVP 95 (123)
Q Consensus 80 ~dd~ee~l~~l~~~~~ 95 (123)
.+|++++.+.|.....
T Consensus 318 ~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 318 PGDPAALAEAIRRLLA 333 (366)
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4678888888877543
No 62
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=57.98 E-value=70 Score=26.01 Aligned_cols=69 Identities=10% Similarity=0.153 Sum_probs=40.6
Q ss_pred HHHHHHhcCEEEEc---CCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEE-c
Q 033246 5 KAEMARNSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS-A 80 (123)
Q Consensus 5 K~~m~~~sDa~I~l---PGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~-~ 80 (123)
...+...||++|.- ..|+|.. ++|+++. .+|||..+..| ...+ +.. .....+.+ .
T Consensus 270 l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma~------G~PVI~s~~gg-~~Ei-------v~~-----~~~G~~l~~~ 328 (380)
T PRK15484 270 MHNYYPLADLVVVPSQVEEAFCMV--AVEAMAA------GKPVLASTKGG-ITEF-------VLE-----GITGYHLAEP 328 (380)
T ss_pred HHHHHHhCCEEEeCCCCccccccH--HHHHHHc------CCCEEEeCCCC-cHhh-------ccc-----CCceEEEeCC
Confidence 34567889998862 3556653 6677764 89999988754 2222 111 11222122 4
Q ss_pred CCHHHHHHHHHhhc
Q 033246 81 PNAKELVQKLEEYV 94 (123)
Q Consensus 81 dd~ee~l~~l~~~~ 94 (123)
.|++++.+.|....
T Consensus 329 ~d~~~la~~I~~ll 342 (380)
T PRK15484 329 MTSDSIISDINRTL 342 (380)
T ss_pred CCHHHHHHHHHHHH
Confidence 57888877776653
No 63
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=57.77 E-value=30 Score=26.98 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=55.6
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhC-------CCCCcEEEEeCCCccH-HHHHHHHHHHHcC-CCCcccccceEEcCC
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLG-------IHDKPVGLINVDGYYN-SLLNFIDKAVDDG-FISPSQRSILVSAPN 82 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg-------~~~kPiilln~~gf~~-~l~~~l~~~~~~g-fi~~~~~~~i~~~dd 82 (123)
.|+.|+.|=.++||..+.-=++-+-+. +-++|+||+-.+--+. .-++-+-.+.+.| .|-|....-.+--.+
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlkl~~~GaiI~Pp~PaFY~~P~s 160 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLKLAEMGAIIMPPMPAFYHKPQS 160 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHHHHHCCCEecCCChhhhcCCCC
Confidence 579999999999999998766655553 2378999997764333 2223233344444 556666666677788
Q ss_pred HHHHHHHHHh
Q 033246 83 AKELVQKLEE 92 (123)
Q Consensus 83 ~ee~l~~l~~ 92 (123)
+||+++++-.
T Consensus 161 ieDlvd~~v~ 170 (191)
T COG0163 161 IEDLVDFVVG 170 (191)
T ss_pred HHHHHHHHHH
Confidence 9999888755
No 64
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=57.49 E-value=71 Score=26.68 Aligned_cols=73 Identities=19% Similarity=0.128 Sum_probs=42.6
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCcc---HHHHHHHHHHHHcCCCCcccccceEEcCC
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYY---NSLLNFIDKAVDDGFISPSQRSILVSAPN 82 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~---~~l~~~l~~~~~~gfi~~~~~~~i~~~dd 82 (123)
...++.||.+|.=+| ..|+.|+.. ..+|.|++-.- +. +...+ -+.+.+.|...--.... =+
T Consensus 247 ~~~~~~ADLvIsRaG-a~Ti~E~~a---------~g~P~IliP~p-~~~~~~Q~~N-A~~l~~~gaa~~i~~~~----lt 310 (357)
T COG0707 247 AALLAAADLVISRAG-ALTIAELLA---------LGVPAILVPYP-PGADGHQEYN-AKFLEKAGAALVIRQSE----LT 310 (357)
T ss_pred HHHHHhccEEEeCCc-ccHHHHHHH---------hCCCEEEeCCC-CCccchHHHH-HHHHHhCCCEEEecccc----CC
Confidence 445677887777665 579999873 37999999763 56 22222 24466665331111100 13
Q ss_pred HHHHHHHHHhhc
Q 033246 83 AKELVQKLEEYV 94 (123)
Q Consensus 83 ~ee~l~~l~~~~ 94 (123)
++++.+.|.+..
T Consensus 311 ~~~l~~~i~~l~ 322 (357)
T COG0707 311 PEKLAELILRLL 322 (357)
T ss_pred HHHHHHHHHHHh
Confidence 667777776654
No 65
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=56.60 E-value=55 Score=24.97 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=41.0
Q ss_pred HHHHHHHhcCEEEEcCCc------hhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccce
Q 033246 4 RKAEMARNSDCFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSIL 77 (123)
Q Consensus 4 RK~~m~~~sDa~I~lPGG------~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i 77 (123)
....+...||++|...-. -|.-.=++|+++. ++|++..+..+ ...++. . .....+
T Consensus 248 ~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~------G~Pvi~~~~~~-~~~~i~-------~-----~~~g~~ 308 (355)
T cd03799 248 EVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAM------GLPVISTDVSG-IPELVE-------D-----GETGLL 308 (355)
T ss_pred HHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHc------CCCEEecCCCC-cchhhh-------C-----CCceEE
Confidence 345567789987763222 2233447777764 99999887643 222221 1 112222
Q ss_pred EEcCCHHHHHHHHHhhc
Q 033246 78 VSAPNAKELVQKLEEYV 94 (123)
Q Consensus 78 ~~~dd~ee~l~~l~~~~ 94 (123)
.-.+|++++.+.|....
T Consensus 309 ~~~~~~~~l~~~i~~~~ 325 (355)
T cd03799 309 VPPGDPEALADAIERLL 325 (355)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 33348888888887653
No 66
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=56.59 E-value=74 Score=26.36 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=41.1
Q ss_pred cCEEE-EcCCchhhHHHHHHHHHHHHhCC-CCCcEEEEeCCC-ccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHH
Q 033246 12 SDCFI-ALPGGYGTLEELLEVITWAQLGI-HDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQ 88 (123)
Q Consensus 12 sDa~I-~lPGG~GTLdEl~evlt~~qlg~-~~kPiilln~~g-f~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l~ 88 (123)
.|+++ .++||+.-.+++.+.+.-..-.. ++||+++ ...| -.+... +.+.+.|+ .+.+.+++++++.
T Consensus 311 vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv-~~~g~~~~~~~---~~L~~~G~-------~ip~~~~~~~Av~ 379 (386)
T TIGR01016 311 VKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVV-RLEGTNVEEGK---KILAESGL-------NIIFATSMEEAAE 379 (386)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEE-EeCCccHHHHH---HHHHHcCC-------CccccCCHHHHHH
Confidence 35644 46789888888887766433322 3489955 4444 222222 22444342 2457889999887
Q ss_pred HHHh
Q 033246 89 KLEE 92 (123)
Q Consensus 89 ~l~~ 92 (123)
.+-+
T Consensus 380 ~~~~ 383 (386)
T TIGR01016 380 KAVE 383 (386)
T ss_pred HHHH
Confidence 7643
No 67
>PHA03359 UL17 tegument protein; Provisional
Probab=56.10 E-value=5.8 Score=36.27 Aligned_cols=21 Identities=14% Similarity=0.468 Sum_probs=15.0
Q ss_pred cCEEEEcCCchhhHHHHHHHH
Q 033246 12 SDCFIALPGGYGTLEELLEVI 32 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evl 32 (123)
=+++||||||||----+.+.+
T Consensus 648 L~~~vVfPGGF~~~~~~a~~l 668 (686)
T PHA03359 648 LHALVVFPGGFALEADAAAHL 668 (686)
T ss_pred cCEEEEecCcceEEeehHHhc
Confidence 478999999998554444433
No 68
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=56.06 E-value=14 Score=29.52 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=25.9
Q ss_pred hcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEE
Q 033246 11 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVG 45 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPii 45 (123)
..||+++.-||.|+. ++..-+.+..+..++|+++
T Consensus 62 ~i~aI~~~rGG~ga~-rlL~~ld~~~~~~~pK~~i 95 (282)
T cd07025 62 EIKAIWCARGGYGAN-RLLPYLDYDLIRANPKIFV 95 (282)
T ss_pred CCCEEEEcCCcCCHH-HhhhhCCHHHHhhCCeEEE
Confidence 479999999999986 5666677877775555544
No 69
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=55.33 E-value=23 Score=23.94 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=22.3
Q ss_pred HHHHHhcCEEEEcCC---chhhHHHHHHHHH
Q 033246 6 AEMARNSDCFIALPG---GYGTLEELLEVIT 33 (123)
Q Consensus 6 ~~m~~~sDa~I~lPG---G~GTLdEl~evlt 33 (123)
..|+..||+++.||| .-|..-|..-+-.
T Consensus 54 l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~ 84 (92)
T PF14359_consen 54 LAMLSDCDAIYMLPGWENSRGARLEHELAKK 84 (92)
T ss_pred HHHHHhCCEEEEcCCcccCcchHHHHHHHHH
Confidence 345669999999999 7888888876654
No 70
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=55.29 E-value=27 Score=29.83 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=36.8
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC-----CccHHHHHHHHH
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD-----GYYNSLLNFIDK 62 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~-----gf~~~l~~~l~~ 62 (123)
.|+|||.=| .=||+|-..+++++--+ .+|||||.+.- --.|...+++..
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~~-~~kPVVlTGAqrp~~~~~sDa~~NL~~A 193 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFET-LPVPVVLVGAQRSSDRPSSDAALNLICA 193 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhhC-CCCCEEEECCCCCCCCCCchHHHHHHHH
Confidence 689999875 89999999999875433 38999999872 245666676654
No 71
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=55.24 E-value=48 Score=25.36 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=41.2
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKE 85 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee 85 (123)
..++..||++|.-+..-|.--=++|+++. ++|+|..+.. ....++ + + ...++-.+|+++
T Consensus 257 ~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~------G~PvI~~~~~-~~~e~i---~---~--------~g~~~~~~~~~~ 315 (360)
T cd04951 257 AAYYNAADLFVLSSAWEGFGLVVAEAMAC------ELPVVATDAG-GVREVV---G---D--------SGLIVPISDPEA 315 (360)
T ss_pred HHHHHhhceEEecccccCCChHHHHHHHc------CCCEEEecCC-ChhhEe---c---C--------CceEeCCCCHHH
Confidence 34678899877655422222236777764 8999987764 222221 1 1 233455688988
Q ss_pred HHHHHHhhc
Q 033246 86 LVQKLEEYV 94 (123)
Q Consensus 86 ~l~~l~~~~ 94 (123)
+.+.+....
T Consensus 316 ~~~~i~~ll 324 (360)
T cd04951 316 LANKIDEIL 324 (360)
T ss_pred HHHHHHHHH
Confidence 888887763
No 72
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=55.02 E-value=75 Score=24.34 Aligned_cols=69 Identities=16% Similarity=0.308 Sum_probs=40.2
Q ss_pred HHHHHHhcCEEEEcC--CchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC
Q 033246 5 KAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 82 (123)
Q Consensus 5 K~~m~~~sDa~I~lP--GG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd 82 (123)
...++..||++|.-. .|+|. =++|+++. .+|+|..+..+ ...++. ......+.-..|
T Consensus 258 ~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~~------g~PvI~~~~~~-~~e~~~------------~~~~g~~~~~~~ 316 (365)
T cd03825 258 LALIYSAADVFVVPSLQENFPN--TAIEALAC------GTPVVAFDVGG-IPDIVD------------HGVTGYLAKPGD 316 (365)
T ss_pred HHHHHHhCCEEEeccccccccH--HHHHHHhc------CCCEEEecCCC-Chhhee------------CCCceEEeCCCC
Confidence 445788899987643 33443 36677754 99999988743 222211 111222333457
Q ss_pred HHHHHHHHHhhc
Q 033246 83 AKELVQKLEEYV 94 (123)
Q Consensus 83 ~ee~l~~l~~~~ 94 (123)
++++.+.+....
T Consensus 317 ~~~~~~~l~~l~ 328 (365)
T cd03825 317 PEDLAEGIEWLL 328 (365)
T ss_pred HHHHHHHHHHHH
Confidence 888877776654
No 73
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=55.01 E-value=80 Score=26.21 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=42.1
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHH
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELV 87 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l 87 (123)
++..||.+| ||-|||. .|+..+ ..|.|-+.. |.+-..- +.+++.|.+ ..+.|++|++
T Consensus 245 Ll~~a~l~I---g~ggTMa--~EAA~L------GtPaIs~~~-g~~~~vd---~~L~~~Gll--------~~~~~~~ei~ 301 (335)
T PF04007_consen 245 LLYYADLVI---GGGGTMA--REAALL------GTPAISCFP-GKLLAVD---KYLIEKGLL--------YHSTDPDEIV 301 (335)
T ss_pred HHHhcCEEE---eCCcHHH--HHHHHh------CCCEEEecC-CcchhHH---HHHHHCCCe--------EecCCHHHHH
Confidence 667788877 6677886 455544 889886543 2322222 346666654 8899999999
Q ss_pred HHHHhh
Q 033246 88 QKLEEY 93 (123)
Q Consensus 88 ~~l~~~ 93 (123)
+.+.+.
T Consensus 302 ~~v~~~ 307 (335)
T PF04007_consen 302 EYVRKN 307 (335)
T ss_pred HHHHHh
Confidence 988664
No 74
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=54.98 E-value=17 Score=26.64 Aligned_cols=40 Identities=30% Similarity=0.371 Sum_probs=22.6
Q ss_pred hcCEEEEcCCc-----hhhHHHHHHHHHHHHhC-CCCCcEEEEeCC
Q 033246 11 NSDCFIALPGG-----YGTLEELLEVITWAQLG-IHDKPVGLINVD 50 (123)
Q Consensus 11 ~sDa~I~lPGG-----~GTLdEl~evlt~~qlg-~~~kPiilln~~ 50 (123)
.+|.+|+.+|| .++.......+.+...- ..+||+++++..
T Consensus 63 ~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 63 NADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred cCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECce
Confidence 45667777775 23333222223333333 569999999984
No 75
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=54.80 E-value=38 Score=27.05 Aligned_cols=42 Identities=26% Similarity=0.500 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHH-----HHHHHHHcCC
Q 033246 24 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN-----FIDKAVDDGF 68 (123)
Q Consensus 24 TLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~-----~l~~~~~~gf 68 (123)
|++.+++.+.-..-+..+.|++++ +||++++. +++.+.+.|.
T Consensus 72 ~~~~~~~~~~~~r~~~~~~p~vlm---~Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 72 TLADVFELVREIREKDPTIPIVLM---TYYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEE---ecccHHhhcCHHHHHHHHHHcCC
Confidence 567777777654434457899988 48887655 5677777663
No 76
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=54.73 E-value=63 Score=23.86 Aligned_cols=68 Identities=21% Similarity=0.367 Sum_probs=39.0
Q ss_pred HHHHHHhcCEEEEcC--CchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC
Q 033246 5 KAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 82 (123)
Q Consensus 5 K~~m~~~sDa~I~lP--GG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd 82 (123)
...++..||++|... +|+|+ =++|+++. ++|+|..+..+ ...++. ......+.-.+|
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~--~~~Ea~~~------g~pvI~~~~~~-~~~~~~------------~~~~g~~~~~~~ 327 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGL--VLLEAMAA------GLPVVASDVGG-IPEVVE------------DGETGLLVPPGD 327 (374)
T ss_pred HHHHHHhcCEEEecchhccccc--hHHHHHHc------CCcEEEeCCCC-hhHHhc------------CCcceEEeCCCC
Confidence 344677789877543 23333 25666654 89999988643 222221 112223344445
Q ss_pred HHHHHHHHHhh
Q 033246 83 AKELVQKLEEY 93 (123)
Q Consensus 83 ~ee~l~~l~~~ 93 (123)
++++.+.|.+.
T Consensus 328 ~~~l~~~i~~~ 338 (374)
T cd03801 328 PEALAEAILRL 338 (374)
T ss_pred HHHHHHHHHHH
Confidence 78888888775
No 77
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=54.66 E-value=15 Score=28.54 Aligned_cols=14 Identities=36% Similarity=0.944 Sum_probs=10.6
Q ss_pred EEEcCCchhhHHHH
Q 033246 15 FIALPGGYGTLEEL 28 (123)
Q Consensus 15 ~I~lPGG~GTLdEl 28 (123)
.|++|||.|..+-+
T Consensus 85 alviPGG~~~~~~l 98 (213)
T cd03133 85 ALIFPGGFGAAKNL 98 (213)
T ss_pred EEEECCCCchhhhh
Confidence 67899999975443
No 78
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=54.05 E-value=41 Score=26.32 Aligned_cols=67 Identities=25% Similarity=0.395 Sum_probs=38.8
Q ss_pred HHHHhcCEEEE--cCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHH
Q 033246 7 EMARNSDCFIA--LPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAK 84 (123)
Q Consensus 7 ~m~~~sDa~I~--lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~e 84 (123)
.+...||+++. ...|+|.- ++|+++. .+|++..+..| ...+ +.+ .....+.=.+|++
T Consensus 298 ~~~~~adi~l~ps~~e~~~~~--l~Ea~a~------G~Pvi~s~~~~-~~e~-------i~~-----~~~g~~~~~~~~~ 356 (398)
T cd03800 298 ALYRAADVFVNPALYEPFGLT--ALEAMAC------GLPVVATAVGG-PRDI-------VVD-----GVTGLLVDPRDPE 356 (398)
T ss_pred HHHHhCCEEEecccccccCcH--HHHHHhc------CCCEEECCCCC-HHHH-------ccC-----CCCeEEeCCCCHH
Confidence 45777999874 23455543 6777764 89999887643 2222 211 1122223235788
Q ss_pred HHHHHHHhhc
Q 033246 85 ELVQKLEEYV 94 (123)
Q Consensus 85 e~l~~l~~~~ 94 (123)
++.+.|....
T Consensus 357 ~l~~~i~~l~ 366 (398)
T cd03800 357 ALAAALRRLL 366 (398)
T ss_pred HHHHHHHHHH
Confidence 8888777653
No 79
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=53.60 E-value=42 Score=25.11 Aligned_cols=36 Identities=17% Similarity=0.058 Sum_probs=24.9
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
.+..|++|+.|....++++..+.+. .++.|+++++.
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~-----~~~iPvV~~~~ 90 (275)
T cd06320 55 NKGYKGLLFSPISDVNLVPAVERAK-----KKGIPVVNVND 90 (275)
T ss_pred HhCCCEEEECCCChHHhHHHHHHHH-----HCCCeEEEECC
Confidence 3468999999877666777655443 34668888764
No 80
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=53.14 E-value=28 Score=28.04 Aligned_cols=44 Identities=32% Similarity=0.666 Sum_probs=29.3
Q ss_pred CchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHH-----HHHHHHHcC
Q 033246 20 GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN-----FIDKAVDDG 67 (123)
Q Consensus 20 GG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~-----~l~~~~~~g 67 (123)
.|+ |++.+++.+.-.+-...+.|++++. ||++++. +++.+.+.|
T Consensus 67 ~G~-~~~~~~~~~~~ir~~~~~~pivlm~---Y~N~i~~~G~e~F~~~~~~aG 115 (259)
T PF00290_consen 67 NGF-TLEKIFELVKEIRKKEPDIPIVLMT---YYNPIFQYGIERFFKEAKEAG 115 (259)
T ss_dssp TT---HHHHHHHHHHHHHHCTSSEEEEEE----HHHHHHH-HHHHHHHHHHHT
T ss_pred CCC-CHHHHHHHHHHHhccCCCCCEEEEe---eccHHhccchHHHHHHHHHcC
Confidence 344 4788888887666556789999995 9998654 555566644
No 81
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.34 E-value=43 Score=25.41 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=24.5
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
++.+..|++|+.|...+...+..+.+. ..+.|+++++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (272)
T cd06313 51 MASQGWDFIAVDPLGIGTLTEAVQKAI-----ARGIPVIDMGT 88 (272)
T ss_pred HHHcCCCEEEEcCCChHHhHHHHHHHH-----HCCCcEEEeCC
Confidence 444568999999977666666654442 23557777664
No 82
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=52.03 E-value=42 Score=25.11 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=37.7
Q ss_pred HHHHhcCEEEEcCCch-hhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 033246 7 EMARNSDCFIALPGGY-GTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKE 85 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~-GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee 85 (123)
-++..||++|. |... |.--=++|+++. ++|+|..+..+ ...++. . .| .+.-.+|+++
T Consensus 264 ~~~~~adi~v~-ps~~e~~~~~~~Ea~a~------g~PvI~~~~~~-~~e~~~---~---~g--------~~~~~~~~~~ 321 (365)
T cd03807 264 ALLNALDVFVL-SSLSEGFPNVLLEAMAC------GLPVVATDVGD-NAELVG---D---TG--------FLVPPGDPEA 321 (365)
T ss_pred HHHHhCCEEEe-CCccccCCcHHHHHHhc------CCCEEEcCCCC-hHHHhh---c---CC--------EEeCCCCHHH
Confidence 46678888764 4332 211225666654 89999877643 332222 1 22 2344567888
Q ss_pred HHHHHHhhc
Q 033246 86 LVQKLEEYV 94 (123)
Q Consensus 86 ~l~~l~~~~ 94 (123)
+.+.+....
T Consensus 322 l~~~i~~l~ 330 (365)
T cd03807 322 LAEAIEALL 330 (365)
T ss_pred HHHHHHHHH
Confidence 887777653
No 83
>PRK13660 hypothetical protein; Provisional
Probab=51.88 E-value=74 Score=24.32 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=28.5
Q ss_pred CchHHHHHHHhcCEEEEc-----CCchhhHHHHHHHHHHHHhCCCCCcEEEEe
Q 033246 1 MHQRKAEMARNSDCFIAL-----PGGYGTLEELLEVITWAQLGIHDKPVGLIN 48 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~l-----PGG~GTLdEl~evlt~~qlg~~~kPiilln 48 (123)
|+.|...|+++||++|++ +||.+=.-+.+.-. -..++.||.++.
T Consensus 119 ~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~~A~k~----~~~~~y~i~~I~ 167 (182)
T PRK13660 119 FRQYNQFMLEHTDGALLVYDEENEGSPKYFYEAAKKK----QEKEDYPLDLIT 167 (182)
T ss_pred HHHHHHHHHHccCeEEEEEcCCCCCChHHHHHHHHHh----hhccCceEEEeC
Confidence 467999999999999884 56666332222111 113578888883
No 84
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=51.62 E-value=94 Score=22.91 Aligned_cols=70 Identities=19% Similarity=0.318 Sum_probs=39.4
Q ss_pred HHHHHHHhcCEEEEcCC--chhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC
Q 033246 4 RKAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 81 (123)
Q Consensus 4 RK~~m~~~sDa~I~lPG--G~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d 81 (123)
....++..||++|.-.. |+|+- ++|+++. .+|++..+..+....+. +. .....+.-..
T Consensus 245 ~~~~~~~~ad~~i~ps~~e~~~~~--~~Ea~a~------G~Pvi~~~~~~~~~~~~-------~~-----~~~g~~~~~~ 304 (348)
T cd03820 245 NIEEYYAKASIFVLTSRFEGFPMV--LLEAMAF------GLPVISFDCPTGPSEII-------ED-----GVNGLLVPNG 304 (348)
T ss_pred hHHHHHHhCCEEEeCccccccCHH--HHHHHHc------CCCEEEecCCCchHhhh-------cc-----CcceEEeCCC
Confidence 34556778888765332 33432 6777764 89999887543333222 11 1122223334
Q ss_pred CHHHHHHHHHhh
Q 033246 82 NAKELVQKLEEY 93 (123)
Q Consensus 82 d~ee~l~~l~~~ 93 (123)
|++++.+.|.+.
T Consensus 305 ~~~~~~~~i~~l 316 (348)
T cd03820 305 DVEALAEALLRL 316 (348)
T ss_pred CHHHHHHHHHHH
Confidence 678888888776
No 85
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=51.52 E-value=45 Score=24.92 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=25.8
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+..+..|++|+.|....++++..+.+. ..+.|+++++.
T Consensus 56 ~~~~~vdgiIi~~~~~~~~~~~l~~~~-----~~~iPvv~~~~ 93 (272)
T cd06300 56 LIAQGVDAIIINPASPTALNPVIEEAC-----EAGIPVVSFDG 93 (272)
T ss_pred HHHcCCCEEEEeCCChhhhHHHHHHHH-----HCCCeEEEEec
Confidence 345588999999987666666554442 23568888764
No 86
>PRK04155 chaperone protein HchA; Provisional
Probab=51.18 E-value=15 Score=29.85 Aligned_cols=34 Identities=26% Similarity=0.222 Sum_probs=21.4
Q ss_pred EEEcCCchhhHHHHHHHHHHHHh----CCCCCcEEEEe
Q 033246 15 FIALPGGYGTLEELLEVITWAQL----GIHDKPVGLIN 48 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~ql----g~~~kPiilln 48 (123)
.|++|||.|.+..+-+--.+.++ -.++|||+-+-
T Consensus 150 aV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAIC 187 (287)
T PRK04155 150 AVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLC 187 (287)
T ss_pred EEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEC
Confidence 78999999998765432222222 13578887664
No 87
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=50.78 E-value=1.1e+02 Score=23.74 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=39.9
Q ss_pred HHHHHHhcCEEEEcCCch-------hhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccce
Q 033246 5 KAEMARNSDCFIALPGGY-------GTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSIL 77 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~-------GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i 77 (123)
...++..||++|. |.-. |.-.=++|+++. .+|++.-+..+. ..++ .......+
T Consensus 258 l~~~~~~ad~~v~-ps~~~~~~~~E~~~~~~~EA~a~------G~PvI~s~~~~~-~e~i------------~~~~~g~~ 317 (367)
T cd05844 258 VRELMRRARIFLQ-PSVTAPSGDAEGLPVVLLEAQAS------GVPVVATRHGGI-PEAV------------EDGETGLL 317 (367)
T ss_pred HHHHHHhCCEEEE-CcccCCCCCccCCchHHHHHHHc------CCCEEEeCCCCc-hhhe------------ecCCeeEE
Confidence 3456788998765 4321 122236677764 899998876542 2211 11122223
Q ss_pred EEcCCHHHHHHHHHhhc
Q 033246 78 VSAPNAKELVQKLEEYV 94 (123)
Q Consensus 78 ~~~dd~ee~l~~l~~~~ 94 (123)
.-.+|++++.+.|.+..
T Consensus 318 ~~~~d~~~l~~~i~~l~ 334 (367)
T cd05844 318 VPEGDVAALAAALGRLL 334 (367)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 33468888888887754
No 88
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=50.61 E-value=35 Score=29.33 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=38.4
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC-----CCccHHHHHHHHHH
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV-----DGYYNSLLNFIDKA 63 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~-----~gf~~~l~~~l~~~ 63 (123)
.|+|||.= |.=||+|-..+++++- ..+|||||.+. .--.|...+++..+
T Consensus 153 ~dGvVVtH-GTDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 153 ADGVVVAH-GTDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCeEEEec-CCchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 79999986 5899999999998866 45999999987 23566677776643
No 89
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=49.87 E-value=60 Score=26.02 Aligned_cols=72 Identities=11% Similarity=0.129 Sum_probs=48.0
Q ss_pred HHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhC-CCCCcEEEEeCCC-ccHHHHHHHHHHHHcCCCCcccccceEEcC
Q 033246 4 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVSAP 81 (123)
Q Consensus 4 RK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg-~~~kPiilln~~g-f~~~l~~~l~~~~~~gfi~~~~~~~i~~~d 81 (123)
|....++.+|.+|+ +||--.+.-+..+.+.- .++.|+|++|.+. .+++ .-.+.+..
T Consensus 207 ~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~------------------~~~~~i~g 264 (285)
T PRK05333 207 AARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADP------------------LLTLKVEA 264 (285)
T ss_pred HHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCc------------------ceeEEEeC
Confidence 34455677999998 88887776555444332 4567999999753 1111 11468889
Q ss_pred CHHHHHHHHHhhcCCC
Q 033246 82 NAKELVQKLEEYVPLH 97 (123)
Q Consensus 82 d~ee~l~~l~~~~~~~ 97 (123)
+..+++..|.+.....
T Consensus 265 ~~~evL~~l~~~l~~~ 280 (285)
T PRK05333 265 SCAQALAALVARLGLA 280 (285)
T ss_pred CHHHHHHHHHHHhCCC
Confidence 9999999997654433
No 90
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=48.50 E-value=32 Score=28.89 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=29.2
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+|++||.= |.=||+|-...++++--. +|||||.+.
T Consensus 101 ~dGvVItH-GTDTmeeTA~~L~l~l~~--~kPVVlTGa 135 (351)
T COG0252 101 VDGVVITH-GTDTMEETAFFLSLTLNT--PKPVVLTGA 135 (351)
T ss_pred CCeEEEeC-CCchHHHHHHHHHHHhcC--CCCEEEeCC
Confidence 48888876 588999999999886555 999999986
No 91
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=48.25 E-value=16 Score=29.62 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=26.0
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEE
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVG 45 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPii 45 (123)
.||+++.-||+|+. ++..-+.+..+..++|+++
T Consensus 67 i~aI~~~rGG~g~~-rlL~~lD~~~i~~~PK~fi 99 (308)
T cd07062 67 IKAIIPTIGGDDSN-ELLPYLDYELIKKNPKIFI 99 (308)
T ss_pred CCEEEECCcccCHh-hhhhhcCHHHHhhCCCEEE
Confidence 58999999999986 5777777777776666544
No 92
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=48.04 E-value=1.2e+02 Score=24.01 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHH-----HHHHHHHHHcC
Q 033246 24 TLEELLEVITWAQLGIHDKPVGLINVDGYYNSL-----LNFIDKAVDDG 67 (123)
Q Consensus 24 TLdEl~evlt~~qlg~~~kPiilln~~gf~~~l-----~~~l~~~~~~g 67 (123)
|++.+++.+....-...+.|++++. ||+++ .++++.+.+.|
T Consensus 70 ~~~~~~~~v~~ir~~~~~~plv~m~---Y~Npi~~~G~e~f~~~~~~aG 115 (256)
T TIGR00262 70 TPEKCFELLKKVRQKHPNIPIGLLT---YYNLIFRKGVEEFYAKCKEVG 115 (256)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEE---eccHHhhhhHHHHHHHHHHcC
Confidence 5677777776544333478988774 88774 45667777766
No 93
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=48.00 E-value=29 Score=27.53 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=23.7
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhC-CCCCcEEEEeC
Q 033246 15 FIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINV 49 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg-~~~kPiilln~ 49 (123)
.|+.-||=||+.|+...+.- .+ ..+.|+.++-.
T Consensus 55 ~vv~~GGDGTi~ev~ngl~~--~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALAQ--IRDDAAPALGLLPL 88 (293)
T ss_pred EEEEEcCChHHHHHHHHHHh--hCCCCCCcEEEEcC
Confidence 67788999999999988832 22 12457888754
No 94
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=47.81 E-value=1.5e+02 Score=24.98 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=42.5
Q ss_pred cCEE-EEcCCchhhHHHHHHHHHHHHhC-CCCCcEEEEeCCC-ccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHH
Q 033246 12 SDCF-IALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQ 88 (123)
Q Consensus 12 sDa~-I~lPGG~GTLdEl~evlt~~qlg-~~~kPiilln~~g-f~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l~ 88 (123)
.|++ |.++||+.-.+++.+.+.-..-. ..+||+++ ...| -.+... +.+.+.|+ .++..+|.+|+.+
T Consensus 311 VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv-~l~G~~~e~~~---~iL~~~Gi-------pvf~~~~~~~a~~ 379 (392)
T PRK14046 311 VKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVV-RLAGTNVEEGR---KILAESGL-------PIITADTLAEAAE 379 (392)
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEE-EcCCCCHHHHH---HHHHHcCC-------CeeecCCHHHHHH
Confidence 3564 45678888778888777643333 25789944 4444 222222 22333332 3577889999988
Q ss_pred HHHhh
Q 033246 89 KLEEY 93 (123)
Q Consensus 89 ~l~~~ 93 (123)
.+-+.
T Consensus 380 ~~v~~ 384 (392)
T PRK14046 380 KAVEA 384 (392)
T ss_pred HHHHH
Confidence 87654
No 95
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=47.49 E-value=13 Score=29.16 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=21.1
Q ss_pred EEEcCCchhhHHHHHHHHHHHHh----CCCCCcEEEEe
Q 033246 15 FIALPGGYGTLEELLEVITWAQL----GIHDKPVGLIN 48 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~ql----g~~~kPiilln 48 (123)
.|++|||.|.+..+..--.+.++ ...+|||..+-
T Consensus 97 av~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIC 134 (231)
T cd03147 97 IFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVC 134 (231)
T ss_pred EEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEC
Confidence 67899999987655432222111 13578888775
No 96
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=47.14 E-value=1.1e+02 Score=22.12 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=21.4
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
..++++.-=|++--.++++++. ..... ||||++-..
T Consensus 55 t~~I~ly~E~~~d~~~f~~~~~--~a~~~-KPVv~lk~G 90 (138)
T PF13607_consen 55 TRVIVLYLEGIGDGRRFLEAAR--RAARR-KPVVVLKAG 90 (138)
T ss_dssp --EEEEEES--S-HHHHHHHHH--HHCCC-S-EEEEE--
T ss_pred CCEEEEEccCCCCHHHHHHHHH--HHhcC-CCEEEEeCC
Confidence 4567777778888899998874 34444 999999764
No 97
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=46.60 E-value=54 Score=24.56 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=24.1
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+..+..|++|+.|......++..+.+. ..+.|++++|.
T Consensus 51 l~~~~vdgiIi~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (273)
T cd06309 51 FIAQGVDVIILAPVVETGWDPVLKEAK-----AAGIPVILVDR 88 (273)
T ss_pred HHHcCCCEEEEcCCccccchHHHHHHH-----HCCCCEEEEec
Confidence 445579999999876544445443332 24678888875
No 98
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=46.28 E-value=91 Score=25.14 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=40.0
Q ss_pred HHHHHHhcCEEEE--cCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC
Q 033246 5 KAEMARNSDCFIA--LPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 82 (123)
Q Consensus 5 K~~m~~~sDa~I~--lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd 82 (123)
...++..||++|. .|.|+|. =++|+++ ..+|||..+..| ...++ .......+.=.+|
T Consensus 294 ~~~~l~~adv~v~~s~~e~~~~--~llEAmA------~G~PVIas~~~g-~~e~i------------~~~~~G~lv~~~d 352 (396)
T cd03818 294 YLALLQVSDVHVYLTYPFVLSW--SLLEAMA------CGCLVVGSDTAP-VREVI------------TDGENGLLVDFFD 352 (396)
T ss_pred HHHHHHhCcEEEEcCcccccch--HHHHHHH------CCCCEEEcCCCC-chhhc------------ccCCceEEcCCCC
Confidence 3456778888875 3445542 2567775 489999987643 22221 1112223333457
Q ss_pred HHHHHHHHHhhc
Q 033246 83 AKELVQKLEEYV 94 (123)
Q Consensus 83 ~ee~l~~l~~~~ 94 (123)
++++.+.|.+..
T Consensus 353 ~~~la~~i~~ll 364 (396)
T cd03818 353 PDALAAAVIELL 364 (396)
T ss_pred HHHHHHHHHHHH
Confidence 888887776653
No 99
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=45.99 E-value=1.3e+02 Score=23.98 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=35.6
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHH
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 86 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~ 86 (123)
.++..||++|. |.|.+ +.|++++ .+|+|.....|-+.. ++..| ..+.+..|++++
T Consensus 270 ~~l~~ad~vv~-~Sg~~----~~EA~a~------g~PvI~~~~~~~~~e-------~~~~g-------~~~lv~~d~~~i 324 (365)
T TIGR00236 270 NLAANSHLILT-DSGGV----QEEAPSL------GKPVLVLRDTTERPE-------TVEAG-------TNKLVGTDKENI 324 (365)
T ss_pred HHHHhCCEEEE-CChhH----HHHHHHc------CCCEEECCCCCCChH-------HHhcC-------ceEEeCCCHHHH
Confidence 45667787654 54323 3555654 899999732222221 12222 122345689999
Q ss_pred HHHHHhhc
Q 033246 87 VQKLEEYV 94 (123)
Q Consensus 87 l~~l~~~~ 94 (123)
.+.+....
T Consensus 325 ~~ai~~ll 332 (365)
T TIGR00236 325 TKAAKRLL 332 (365)
T ss_pred HHHHHHHH
Confidence 88887764
No 100
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=45.96 E-value=17 Score=28.73 Aligned_cols=40 Identities=30% Similarity=0.265 Sum_probs=23.9
Q ss_pred cCCHHHHHHHHHhh---cCCCCCCcccceecccccccccccccc
Q 033246 80 APNAKELVQKLEEY---VPLHDGVVAKVKWEAEQVELNTSLKTE 120 (123)
Q Consensus 80 ~dd~ee~l~~l~~~---~~~~~~~~~~~~w~~~~~~~~~~~~~~ 120 (123)
.-+++++.++++.. ..+...+... .+..+--|-.||||.|
T Consensus 179 dlt~k~l~eIle~L~~~k~pp~Gprng-R~a~eP~Gg~tsL~~~ 221 (233)
T KOG3196|consen 179 DLTPKKLVEILEDLKAGKKPPAGPRNG-RFASEPKGGLTSLKEE 221 (233)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCCCCC-ccccCCCCCccccccC
Confidence 34455555555443 3333233333 6888888889999875
No 101
>PRK10494 hypothetical protein; Provisional
Probab=45.96 E-value=53 Score=26.11 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=25.0
Q ss_pred HhcCEEEEcCCchhh---------H-----HHHHHHHHHHHhCCCCCcEEEEeCCCccH
Q 033246 10 RNSDCFIALPGGYGT---------L-----EELLEVITWAQLGIHDKPVGLINVDGYYN 54 (123)
Q Consensus 10 ~~sDa~I~lPGG~GT---------L-----dEl~evlt~~qlg~~~kPiilln~~gf~~ 54 (123)
..+|++|||.||... + +=+.+.+.+.+-+ ...||++-+..+..+
T Consensus 77 ~~~d~IVVLGgG~~~~~~~~~~~~l~~~~~~Rl~~a~~L~r~~-~~~~ii~SGg~~~~~ 134 (259)
T PRK10494 77 QKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLTEGIRLWRAN-PGAKLIFTGGAAKTN 134 (259)
T ss_pred CCCCEEEEcCCCcCCCCCCCCcHhHhhhHHHHHHHHHHHHHhC-CCCEEEEECCCCCCC
Confidence 358999999998631 1 2344444333322 145777777655443
No 102
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=45.95 E-value=31 Score=24.76 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=25.0
Q ss_pred HHHHHhcCEEEEcC-----CchhhHHHHHHHHHHHHhCCCCCcEEEE
Q 033246 6 AEMARNSDCFIALP-----GGYGTLEELLEVITWAQLGIHDKPVGLI 47 (123)
Q Consensus 6 ~~m~~~sDa~I~lP-----GG~GTLdEl~evlt~~qlg~~~kPiill 47 (123)
..|++.+|++|++. =..|+--|+-.+.++ ++||.++
T Consensus 74 ~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~------~~~V~~~ 114 (116)
T PF09152_consen 74 RPFLDACDELVVLDIPGWDDSEGIWAEIEAAEEM------GMPVFLY 114 (116)
T ss_dssp HHHHHH-SEEEE---TTGGG-HHHHHHHHHHHHT------T-EEEEH
T ss_pred HHHHHhcceeEEecCCCccccccHHHHHHHHHHc------CCeEEEe
Confidence 35788999999986 478888888887764 8898875
No 103
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=45.49 E-value=1.7e+02 Score=24.08 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=40.6
Q ss_pred HHHHHHhcCEEEEc-CC--chhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC
Q 033246 5 KAEMARNSDCFIAL-PG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 81 (123)
Q Consensus 5 K~~m~~~sDa~I~l-PG--G~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d 81 (123)
...++..||++|.+ |. |.|----++|+++ ..+|||..+..| .. + ++++| .... . ++
T Consensus 308 ~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama------~G~PVI~s~~~~-~~---e----iv~~~-----~~G~-l-v~ 366 (415)
T cd03816 308 YPKLLASADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCALDFKC-ID---E----LVKHG-----ENGL-V-FG 366 (415)
T ss_pred HHHHHHhCCEEEEccccccccCCcHHHHHHHH------cCCCEEEeCCCC-HH---H----HhcCC-----CCEE-E-EC
Confidence 34567889999853 22 3333445677776 489999987642 22 2 23221 1122 2 26
Q ss_pred CHHHHHHHHHhhc
Q 033246 82 NAKELVQKLEEYV 94 (123)
Q Consensus 82 d~ee~l~~l~~~~ 94 (123)
|++++.+.|....
T Consensus 367 d~~~la~~i~~ll 379 (415)
T cd03816 367 DSEELAEQLIDLL 379 (415)
T ss_pred CHHHHHHHHHHHH
Confidence 8888888887653
No 104
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=45.28 E-value=19 Score=29.86 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=41.8
Q ss_pred EEEcCCchhhH-HHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC-HHHHHHHHHh
Q 033246 15 FIALPGGYGTL-EELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN-AKELVQKLEE 92 (123)
Q Consensus 15 ~I~lPGG~GTL-dEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd-~ee~l~~l~~ 92 (123)
-|+|-||.||= -.+. ...+||++=+.....-+..+ +.+.+.|+ .+.+..+.- .+.+.+++.+
T Consensus 4 avILagG~GtRLrPlT--------~~~PKPllpI~gkPii~~~l---~~L~~~Gv-----~eivi~~~y~~~~i~~~~~d 67 (358)
T COG1208 4 AVILAGGYGTRLRPLT--------DDRPKPLLPIAGKPLIEYVL---EALAAAGV-----EEIVLVVGYLGEQIEEYFGD 67 (358)
T ss_pred EEEEeCCccccccccc--------cCCCcccceeCCccHHHHHH---HHHHHCCC-----cEEEEEeccchHHHHHHHhc
Confidence 47889999982 1111 23489998887543333333 34555553 233333232 3434444443
Q ss_pred hcCCCCCCcccceeccccccccc
Q 033246 93 YVPLHDGVVAKVKWEAEQVELNT 115 (123)
Q Consensus 93 ~~~~~~~~~~~~~w~~~~~~~~~ 115 (123)
. ........|+.+..++||
T Consensus 68 ~----~~~~~~I~y~~e~~~lGT 86 (358)
T COG1208 68 G----EGLGVRITYVVEKEPLGT 86 (358)
T ss_pred c----cccCCceEEEecCCcCcc
Confidence 2 112345667776667765
No 105
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=45.20 E-value=1.2e+02 Score=22.16 Aligned_cols=46 Identities=15% Similarity=0.080 Sum_probs=29.2
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccH
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYN 54 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~ 54 (123)
+.+...+.|+++|| -|..++++.++-......=+.+.+++.+.+|-
T Consensus 16 ~~~~~~~~i~lsgG-sTp~~~y~~L~~~~~~~~w~~v~~f~~DEr~v 61 (169)
T cd00458 16 LEEKDDMVIGLGTG-STPAYFYKLLGEKLKRGEISDIVGFPTDERYV 61 (169)
T ss_pred HHhCCCEEEEECCC-ccHHHHHHHHHhhhhhCCccceEEEECccccC
Confidence 34566789999999 36677777765332211125678888877663
No 106
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=44.64 E-value=53 Score=27.10 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=38.3
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC-----CCccHHHHHHHHHH
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV-----DGYYNSLLNFIDKA 63 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~-----~gf~~~l~~~l~~~ 63 (123)
+..|+|||.= |.=||+|-...+++.-. ..+|||||.+. ..-.|...++...+
T Consensus 80 ~~~dG~VVtH-GTDTmeeTA~~L~~~l~-~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 80 DDYDGFVILH-GTDTMAYTASALSFMLE-NLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred ccCCeEEEee-ccchHHHHHHHHHHHHh-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 4579999986 58999999999887532 24899999987 23466677766543
No 107
>PRK13055 putative lipid kinase; Reviewed
Probab=44.17 E-value=26 Score=28.53 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=21.7
Q ss_pred CEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEe
Q 033246 13 DCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 48 (123)
Q Consensus 13 Da~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln 48 (123)
|+ |+.-||=||+.|+...+.- . -.+.|+.++-
T Consensus 61 d~-vvv~GGDGTl~evvngl~~--~-~~~~~LgiiP 92 (334)
T PRK13055 61 DL-IIAAGGDGTINEVVNGIAP--L-EKRPKMAIIP 92 (334)
T ss_pred CE-EEEECCCCHHHHHHHHHhh--c-CCCCcEEEEC
Confidence 54 5566999999999987741 1 1245677764
No 108
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=43.88 E-value=75 Score=26.53 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=43.1
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCc-cHHHHHHHHHHHHcCCCCcccc
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGY-YNSLLNFIDKAVDDGFISPSQR 74 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf-~~~l~~~l~~~~~~gfi~~~~~ 74 (123)
|+..||++|+---.+.-+.|.. + .+||+.++-.++| -..+.-+++.+++.+...+=..
T Consensus 241 ~La~Adyii~TaDSinM~sEAa---s------TgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~ 299 (329)
T COG3660 241 MLAAADYIISTADSINMCSEAA---S------TGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEG 299 (329)
T ss_pred HHhhcceEEEecchhhhhHHHh---c------cCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCc
Confidence 6788999999888777766654 2 4899999999888 5566666778887776554444
No 109
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=43.67 E-value=1e+02 Score=23.93 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=24.7
Q ss_pred HHHHHhcCEEEEcC--CchhhHHHHHHHHHHHHhCCCCCcEEEEeCCC
Q 033246 6 AEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDG 51 (123)
Q Consensus 6 ~~m~~~sDa~I~lP--GG~GTLdEl~evlt~~qlg~~~kPiilln~~g 51 (123)
..++..||++|.-. .|+|.- +.|+++ .++|+|..+..+
T Consensus 265 ~~~~~~~d~~v~ps~~E~~~~~--~~EAma------~g~PvI~s~~~~ 304 (371)
T cd04962 265 EELLSIADLFLLPSEKESFGLA--ALEAMA------CGVPVVASNAGG 304 (371)
T ss_pred HHHHHhcCEEEeCCCcCCCccH--HHHHHH------cCCCEEEeCCCC
Confidence 34567788887542 345532 566665 389999987753
No 110
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=43.55 E-value=28 Score=29.68 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=33.4
Q ss_pred cHH-HHHHHHHHHHcCCCCcccccc---eEEcCCHHHHHHHHHhh
Q 033246 53 YNS-LLNFIDKAVDDGFISPSQRSI---LVSAPNAKELVQKLEEY 93 (123)
Q Consensus 53 ~~~-l~~~l~~~~~~gfi~~~~~~~---i~~~dd~ee~l~~l~~~ 93 (123)
|.. +-.-++.|+.+|.|+++..+. ..+..+++|+.+.+++.
T Consensus 255 ~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~ 299 (386)
T PLN02668 255 FGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEAN 299 (386)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhc
Confidence 444 555678899999999998874 47899999999999863
No 111
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=43.37 E-value=1.2e+02 Score=25.70 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=39.8
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHH
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLE 91 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l~~l~ 91 (123)
+|.|-| -|++| ++++++.|..+.||.+++ |+|.+-.. +...+ .++..++.|.+.+-.+..
T Consensus 55 ~~~f~V-----A~l~E---Ai~LR~~gi~~~~IlvL~--g~~~~~~~--~~~~~--------~~l~~~v~s~~ql~~l~~ 114 (360)
T COG0787 55 ADGFGV-----ASLEE---AIELREAGITGAPILVLE--GFFPAEEL--ELAAA--------YNLTPVVNSLEQLEALKN 114 (360)
T ss_pred CCEEEE-----CcHHH---HHHHHHcCCCCCCEEEEc--CcCChhhH--HHHHH--------cCCeEEECCHHHHHHHHH
Confidence 666643 46665 567788888778999998 67766542 22222 344577788777766554
Q ss_pred hh
Q 033246 92 EY 93 (123)
Q Consensus 92 ~~ 93 (123)
..
T Consensus 115 ~~ 116 (360)
T COG0787 115 AA 116 (360)
T ss_pred hh
Confidence 43
No 112
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=43.22 E-value=16 Score=28.60 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=20.9
Q ss_pred EEEcCCchhhHHHHHHHHHHHHh----CCCCCcEEEEe
Q 033246 15 FIALPGGYGTLEELLEVITWAQL----GIHDKPVGLIN 48 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~ql----g~~~kPiilln 48 (123)
.|++|||.|++..+..--.+.++ -..+|||..+-
T Consensus 99 av~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAIC 136 (232)
T cd03148 99 AVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLC 136 (232)
T ss_pred EEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEEC
Confidence 67899999998754332222221 23578887664
No 113
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=43.11 E-value=42 Score=24.89 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=19.5
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEE
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLI 47 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiill 47 (123)
+..|++|++||. |.-++.-....+.+.-..++|+.=+
T Consensus 42 ~~~d~iIi~gGp-~~~~~~~~~~~~i~~~~~~~PiLGI 78 (190)
T PRK06895 42 ENFSHILISPGP-DVPRAYPQLFAMLERYHQHKSILGV 78 (190)
T ss_pred ccCCEEEECCCC-CChHHhhHHHHHHHHhcCCCCEEEE
Confidence 456898888875 5333333333333321247886533
No 114
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=43.02 E-value=61 Score=24.04 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=29.8
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
.+-+..||+|+.|--...+.++++-+.- .+.|+++++..
T Consensus 51 ~i~~~~d~Iiv~~~~~~~~~~~l~~~~~-----~gIpvv~~d~~ 89 (257)
T PF13407_consen 51 AISQGVDGIIVSPVDPDSLAPFLEKAKA-----AGIPVVTVDSD 89 (257)
T ss_dssp HHHTTESEEEEESSSTTTTHHHHHHHHH-----TTSEEEEESST
T ss_pred HHHhcCCEEEecCCCHHHHHHHHHHHhh-----cCceEEEEecc
Confidence 3456689999999998877788877653 45688888765
No 115
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=42.78 E-value=85 Score=23.31 Aligned_cols=70 Identities=23% Similarity=0.454 Sum_probs=40.7
Q ss_pred HHHHHHhcCEEEEcC--CchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC
Q 033246 5 KAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 82 (123)
Q Consensus 5 K~~m~~~sDa~I~lP--GG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd 82 (123)
..-+...||++|... .|+|+- ++|+++. ++|++.-+..+ ...+ +..+ ....+.-.+|
T Consensus 272 ~~~~~~~ad~~i~~~~~~~~~~~--~~Ea~~~------G~pvI~~~~~~-~~~~-------~~~~-----~~g~~~~~~~ 330 (377)
T cd03798 272 VPAYYAAADVFVLPSLREGFGLV--LLEAMAC------GLPVVATDVGG-IPEI-------ITDG-----ENGLLVPPGD 330 (377)
T ss_pred HHHHHHhcCeeecchhhccCChH--HHHHHhc------CCCEEEecCCC-hHHH-------hcCC-----cceeEECCCC
Confidence 345677789877543 344433 6666654 89999877643 2222 2111 1123444568
Q ss_pred HHHHHHHHHhhcC
Q 033246 83 AKELVQKLEEYVP 95 (123)
Q Consensus 83 ~ee~l~~l~~~~~ 95 (123)
++++.+.|.....
T Consensus 331 ~~~l~~~i~~~~~ 343 (377)
T cd03798 331 PEALAEAILRLLA 343 (377)
T ss_pred HHHHHHHHHHHhc
Confidence 9988888877643
No 116
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=42.71 E-value=1.2e+02 Score=22.94 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=35.6
Q ss_pred CCCcEEEEeCCCccH--HHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHhh
Q 033246 40 HDKPVGLINVDGYYN--SLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEY 93 (123)
Q Consensus 40 ~~kPiilln~~gf~~--~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l~~l~~~ 93 (123)
.+.|+++.+.-+-.+ +.++.++.+.+.|--.-.....+.-.+||.++++.+++.
T Consensus 178 ~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~ 233 (235)
T cd00958 178 CPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAV 233 (235)
T ss_pred CCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHH
Confidence 368988877533333 355666777777755445556666778899988887653
No 117
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=42.70 E-value=1e+02 Score=25.36 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=40.0
Q ss_pred EEEEcCCchhhHHHHHHHHHHHHhCC-CCCcEEEEeC---CCccHHHHHHHHHHH---HcCCCCcccccceEEcC--CHH
Q 033246 14 CFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLINV---DGYYNSLLNFIDKAV---DDGFISPSQRSILVSAP--NAK 84 (123)
Q Consensus 14 a~I~lPGG~GTLdEl~evlt~~qlg~-~~kPiilln~---~gf~~~l~~~l~~~~---~~gfi~~~~~~~i~~~d--d~e 84 (123)
|+|+|-||.||= +|. .+||++=++. ..+++-..+.+..+. .+.+=.......+.+++ +-+
T Consensus 17 a~viLaGG~GTR-----------Lg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~ 85 (323)
T cd04193 17 AVLLLAGGQGTR-----------LGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHE 85 (323)
T ss_pred EEEEECCCcccc-----------cCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhH
Confidence 589999999994 253 4788877752 347777777666543 11111112233444443 467
Q ss_pred HHHHHHHh
Q 033246 85 ELVQKLEE 92 (123)
Q Consensus 85 e~l~~l~~ 92 (123)
++.+++++
T Consensus 86 ~t~~~~~~ 93 (323)
T cd04193 86 ETRKFFKE 93 (323)
T ss_pred HHHHHHHh
Confidence 77777765
No 118
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=42.38 E-value=95 Score=21.46 Aligned_cols=70 Identities=26% Similarity=0.475 Sum_probs=40.2
Q ss_pred HHHHHHHhcCEEEEcCC--chhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC
Q 033246 4 RKAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 81 (123)
Q Consensus 4 RK~~m~~~sDa~I~lPG--G~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d 81 (123)
....+...||++|..-- |+|+ =+.|+++. .+|+|..+.. ....+ +.++ ....+.-..
T Consensus 85 ~l~~~~~~~di~v~~s~~e~~~~--~~~Ea~~~------g~pvI~~~~~-~~~e~-------~~~~-----~~g~~~~~~ 143 (172)
T PF00534_consen 85 ELDELYKSSDIFVSPSRNEGFGL--SLLEAMAC------GCPVIASDIG-GNNEI-------INDG-----VNGFLFDPN 143 (172)
T ss_dssp HHHHHHHHTSEEEE-BSSBSS-H--HHHHHHHT------T-EEEEESST-HHHHH-------SGTT-----TSEEEESTT
T ss_pred ccccccccceecccccccccccc--cccccccc------ccceeecccc-CCcee-------eccc-----cceEEeCCC
Confidence 44667888999887743 3333 45566653 8999998854 33322 2222 133344455
Q ss_pred CHHHHHHHHHhhc
Q 033246 82 NAKELVQKLEEYV 94 (123)
Q Consensus 82 d~ee~l~~l~~~~ 94 (123)
|++++.+.|.+..
T Consensus 144 ~~~~l~~~i~~~l 156 (172)
T PF00534_consen 144 DIEELADAIEKLL 156 (172)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7888888887653
No 119
>PRK11914 diacylglycerol kinase; Reviewed
Probab=42.31 E-value=31 Score=27.42 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=22.8
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
.|+.-||=||+.|+...+. ..+.|+.++-.
T Consensus 67 ~vvv~GGDGTi~evv~~l~-----~~~~~lgiiP~ 96 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLA-----GTDIPLGIIPA 96 (306)
T ss_pred EEEEECCchHHHHHhHHhc-----cCCCcEEEEeC
Confidence 5668899999999997763 23578888753
No 120
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=42.24 E-value=41 Score=26.77 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=41.3
Q ss_pred EEEEcCCchhhHHHHHHHHHHHHhCC-CCCcEEEEe---CCCccHHHHHHHHHHHHcCCCCcccccceEEc--CCHHHHH
Q 033246 14 CFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLIN---VDGYYNSLLNFIDKAVDDGFISPSQRSILVSA--PNAKELV 87 (123)
Q Consensus 14 a~I~lPGG~GTLdEl~evlt~~qlg~-~~kPiilln---~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~--dd~ee~l 87 (123)
|+|+|-||.||= +|. .+||.+=++ ...+.+-.++++..+...- -.......+.++ .+.+++.
T Consensus 2 a~viLaGG~GtR-----------Lg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~-~~~~~Ip~~imts~~t~~~t~ 69 (266)
T cd04180 2 AVVLLAGGLGTR-----------LGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEID-LYSCKIPEQLMNSKYTHEKTQ 69 (266)
T ss_pred EEEEECCCCccc-----------cCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHh-hcCCCCCEEEEcCchhHHHHH
Confidence 789999999994 353 477776555 4457777777766543310 001122333333 3467788
Q ss_pred HHHHhhc
Q 033246 88 QKLEEYV 94 (123)
Q Consensus 88 ~~l~~~~ 94 (123)
++++++.
T Consensus 70 ~~l~~~~ 76 (266)
T cd04180 70 CYFEKIN 76 (266)
T ss_pred HHHHHcC
Confidence 8888765
No 121
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.15 E-value=35 Score=33.66 Aligned_cols=58 Identities=26% Similarity=0.344 Sum_probs=44.5
Q ss_pred EEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHH-HHHHcCCCCccccc
Q 033246 14 CFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFID-KAVDDGFISPSQRS 75 (123)
Q Consensus 14 a~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~-~~~~~gfi~~~~~~ 75 (123)
.++++-||.+|+.=+.+..+. ..+.|++++.++|-=.++++++- .....|.++.....
T Consensus 271 vc~v~eGg~nti~~I~~~v~~----~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~~~~ 329 (1381)
T KOG3614|consen 271 VCLVLEGGPNTLAIILDYVTD----KPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDAERE 329 (1381)
T ss_pred EEEEecCCchHHHHHHHHhcc----CCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHHHHH
Confidence 488999999999988877753 34569999999999999999875 45566665555443
No 122
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=41.90 E-value=30 Score=19.92 Aligned_cols=33 Identities=33% Similarity=0.428 Sum_probs=18.2
Q ss_pred EEEcCCchhhHHHH---HHHHHHHHh-CCCCCcEEEE
Q 033246 15 FIALPGGYGTLEEL---LEVITWAQL-GIHDKPVGLI 47 (123)
Q Consensus 15 ~I~lPGG~GTLdEl---~evlt~~ql-g~~~kPiill 47 (123)
.|++|||.++.... ...+.+.+- ..+++|++-.
T Consensus 49 ~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (92)
T cd03128 49 GLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGI 85 (92)
T ss_pred EEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEE
Confidence 57778888877554 333333222 2345676654
No 123
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=41.54 E-value=90 Score=21.42 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHhCC--CCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC--HHHHHHHHHhh
Q 033246 24 TLEELLEVITWAQLGI--HDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN--AKELVQKLEEY 93 (123)
Q Consensus 24 TLdEl~evlt~~qlg~--~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd--~ee~l~~l~~~ 93 (123)
+++-+-.++...|-.. .-+-+.++|...+++.++..+.. |++++..+.+.++++ .+++.+++...
T Consensus 79 ~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~-----~l~~~~~~ki~~~~~~~~~~L~~~i~~~ 147 (158)
T smart00516 79 DLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKP-----FLDEKTREKIRFVGNDSKEELLEYIDPE 147 (158)
T ss_pred cHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHh-----hcChhhhccEEEeCCCCHHHHHhhCCHh
Confidence 4555555555555543 35789999998666666665444 666777788888887 77777776443
No 124
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=41.47 E-value=1.5e+02 Score=22.18 Aligned_cols=67 Identities=19% Similarity=0.316 Sum_probs=39.8
Q ss_pred HHHHHHhcCEEEEcC--CchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC
Q 033246 5 KAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 82 (123)
Q Consensus 5 K~~m~~~sDa~I~lP--GG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd 82 (123)
..-++..||++|.-. .|+|+- ++|+++. ++|+|..+..| +..++. . ..| +.+.++
T Consensus 275 ~~~~~~~adv~v~ps~~e~~~~~--~~Eama~------G~PvI~~~~~~-~~~~~~---~--~~~---------~~~~~~ 331 (375)
T cd03821 275 KAAALADADLFVLPSHSENFGIV--VAEALAC------GTPVVTTDKVP-WQELIE---Y--GCG---------WVVDDD 331 (375)
T ss_pred HHHHHhhCCEEEeccccCCCCcH--HHHHHhc------CCCEEEcCCCC-HHHHhh---c--Cce---------EEeCCC
Confidence 344567799987543 455653 6777764 89999987643 333322 2 222 334455
Q ss_pred HHHHHHHHHhhc
Q 033246 83 AKELVQKLEEYV 94 (123)
Q Consensus 83 ~ee~l~~l~~~~ 94 (123)
++++.+.|.+..
T Consensus 332 ~~~~~~~i~~l~ 343 (375)
T cd03821 332 VDALAAALRRAL 343 (375)
T ss_pred hHHHHHHHHHHH
Confidence 677777776653
No 125
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.25 E-value=90 Score=23.22 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=23.3
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+.....|++|+.|...-...+.++.+.. .+.|+|+++.
T Consensus 53 l~~~~vdgvii~~~~~~~~~~~l~~~~~-----~~ipvV~~~~ 90 (273)
T cd06310 53 AIARGPDAILLAPTDAKALVPPLKEAKD-----AGIPVVLIDS 90 (273)
T ss_pred HHHhCCCEEEEcCCChhhhHHHHHHHHH-----CCCCEEEecC
Confidence 3445789999998765444455544432 3457777654
No 126
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=40.65 E-value=68 Score=21.29 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=36.0
Q ss_pred HHHHHHhcCEEEEc-CCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCH
Q 033246 5 KAEMARNSDCFIAL-PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNA 83 (123)
Q Consensus 5 K~~m~~~sDa~I~l-PGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ 83 (123)
...++..+|+.|+. +=+.|+-.-++|.++ ..+|++..+. + +..+ ....... +.+.+|+
T Consensus 64 ~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~------~G~pvi~~~~-~-~~~~------------~~~~~~~-~~~~~~~ 122 (135)
T PF13692_consen 64 LPEILAAADVGLIPSRFNEGFPNKLLEAMA------AGKPVIASDN-G-AEGI------------VEEDGCG-VLVANDP 122 (135)
T ss_dssp HHHHHHC-SEEEE-BSS-SCC-HHHHHHHC------TT--EEEEHH-H-CHCH------------S---SEE-EE-TT-H
T ss_pred HHHHHHhCCEEEEEeeCCCcCcHHHHHHHH------hCCCEEECCc-c-hhhh------------eeecCCe-EEECCCH
Confidence 34456778887752 213366677777775 4999999874 2 2222 1122233 3449999
Q ss_pred HHHHHHHHhh
Q 033246 84 KELVQKLEEY 93 (123)
Q Consensus 84 ee~l~~l~~~ 93 (123)
+++.+.|.+.
T Consensus 123 ~~l~~~i~~l 132 (135)
T PF13692_consen 123 EELAEAIERL 132 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 127
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=40.32 E-value=47 Score=24.00 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=26.2
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
..++-+++||+|-|+.-=-.-.+.+.+.|. -|..+++.
T Consensus 41 si~gkILv~p~~kGSt~gs~vl~~l~~~g~--aP~AiI~~ 78 (123)
T cd01356 41 SIAGKVLVLPGGKGSTVGSYVLYELARNGT--APAAIVFE 78 (123)
T ss_pred cccceEEEecCCCCcchHHHHHHHHHHcCC--CCeeEeec
Confidence 357789999999999886665666555544 45555553
No 128
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=40.27 E-value=81 Score=23.45 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=22.8
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+....|++|+.|....-.+++.+.+. ..+.|+|+++.
T Consensus 53 ~~~~vdgiii~~~~~~~~~~~~~~l~-----~~~iPvv~~~~ 89 (272)
T cd06301 53 IAQGVDAIIVVPVDTAATAPIVKAAN-----AAGIPLVYVNR 89 (272)
T ss_pred HHcCCCEEEEecCchhhhHHHHHHHH-----HCCCeEEEecC
Confidence 45578999999876543455544432 23557777654
No 129
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.23 E-value=70 Score=23.95 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=23.3
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+.....|++|+.|.....+.++.+.+. ..+.|++++|.
T Consensus 51 ~~~~~~Dgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (282)
T cd06318 51 LLTRGVNVLIINPVDPEGLVPAVAAAK-----AAGVPVVVVDS 88 (282)
T ss_pred HHHcCCCEEEEecCCccchHHHHHHHH-----HCCCCEEEecC
Confidence 344568999998866554445444332 23567777764
No 130
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=40.15 E-value=44 Score=20.23 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=21.1
Q ss_pred EEEcCCchhhHHHH---HHHHHHHHhC-CCCCcEEEEeC
Q 033246 15 FIALPGGYGTLEEL---LEVITWAQLG-IHDKPVGLINV 49 (123)
Q Consensus 15 ~I~lPGG~GTLdEl---~evlt~~qlg-~~~kPiilln~ 49 (123)
.|++|||.++..+. ...+.+.+-. .+.+|++-.-.
T Consensus 49 ~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~ 87 (115)
T cd01653 49 GLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICL 87 (115)
T ss_pred EEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECc
Confidence 46888988888765 3444333333 45677765543
No 131
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=40.13 E-value=41 Score=22.16 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=31.6
Q ss_pred HHHhCCCCCcEEEEeCCCccHHHHHHHHH-HHHcCCCCcccccceEEcCCHHHHHHHHHhh
Q 033246 34 WAQLGIHDKPVGLINVDGYYNSLLNFIDK-AVDDGFISPSQRSILVSAPNAKELVQKLEEY 93 (123)
Q Consensus 34 ~~qlg~~~kPiilln~~gf~~~l~~~l~~-~~~~gfi~~~~~~~i~~~dd~ee~l~~l~~~ 93 (123)
+.+.+.+-+|++.++.+|..+.+++.++. +-..+.+.-.... ..-++.+++.+.|.+.
T Consensus 9 Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~--~~~~~~~~~~~~l~~~ 67 (84)
T PF01985_consen 9 LRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLG--NCREDRKEIAEQLAEK 67 (84)
T ss_dssp HHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT----HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEcc--CCHHHHHHHHHHHHHH
Confidence 34444567999999999999999999875 4443333222111 1223456666666554
No 132
>PRK10736 hypothetical protein; Provisional
Probab=40.00 E-value=1.8e+02 Score=24.69 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=51.5
Q ss_pred chHHHHHHHhcCEEEEcCC--chhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEE
Q 033246 2 HQRKAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 79 (123)
Q Consensus 2 ~eRK~~m~~~sDa~I~lPG--G~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~ 79 (123)
..|.+++.-+|+++||.=- --|||.=.-.++. .+|+|+.+-.. -+++.-+--.+++++| . ..
T Consensus 209 p~RNRIIagLS~~viVvEA~~kSGsliTA~~Al~------~gR~VfavPG~-i~~~~s~G~n~LI~~G-A--------~l 272 (374)
T PRK10736 209 PRRNRIISGLSKGVLVVEAALRSGSLVTARCALE------QGRDVFALPGP-IGNPGSEGPHWLIKQG-A--------YL 272 (374)
T ss_pred hHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHHH------hCCeEEEEcCC-CCCccchhHHHHHHCC-C--------EE
Confidence 4699999999999888743 3356665555554 38999998543 4554444445566666 3 56
Q ss_pred cCCHHHHHHHHHh
Q 033246 80 APNAKELVQKLEE 92 (123)
Q Consensus 80 ~dd~ee~l~~l~~ 92 (123)
+.+++++++.+..
T Consensus 273 v~~~~Di~~~l~~ 285 (374)
T PRK10736 273 VTSPEDILENLQF 285 (374)
T ss_pred eCCHHHHHHHhhh
Confidence 7888999888853
No 133
>PRK10565 putative carbohydrate kinase; Provisional
Probab=39.57 E-value=35 Score=29.84 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=38.7
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHH
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELV 87 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l 87 (123)
+.+.+|++++=|| .|+-++..+++.. +...++|+| ++-++ +.++.. ..- . .....++.++.|+-
T Consensus 317 ~~~~~~a~viGpG-lg~~~~~~~~~~~--~~~~~~P~V-LDAda-----L~ll~~---~~~-~---~~~~VLTPh~gE~~ 380 (508)
T PRK10565 317 SLEWADVVVIGPG-LGQQEWGKKALQK--VENFRKPML-WDADA-----LNLLAI---NPD-K---RHNRVITPHPGEAA 380 (508)
T ss_pred HhhcCCEEEEeCC-CCCCHHHHHHHHH--HHhcCCCEE-EEchH-----HHHHhh---Ccc-c---cCCeEECCCHHHHH
Confidence 3477899999997 7776655444422 234568865 55555 333321 100 0 11346777777776
Q ss_pred HHHH
Q 033246 88 QKLE 91 (123)
Q Consensus 88 ~~l~ 91 (123)
..+.
T Consensus 381 rL~~ 384 (508)
T PRK10565 381 RLLG 384 (508)
T ss_pred HHhC
Confidence 6653
No 134
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=39.40 E-value=1.8e+02 Score=23.15 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=40.3
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEe-CCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHH
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN-VDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 86 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln-~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~ 86 (123)
....+|++|.-.-.=|.--=++|+++ ..+||+..+ ..| ...+ +.. .....++-..|++++
T Consensus 254 ~~~~~d~~v~~s~~Egf~~~~lEAma------~G~Pvv~s~~~~g-~~ei-------v~~-----~~~G~lv~~~d~~~l 314 (359)
T PRK09922 254 KIKNVSALLLTSKFEGFPMTLLEAMS------YGIPCISSDCMSG-PRDI-------IKP-----GLNGELYTPGNIDEF 314 (359)
T ss_pred HHhcCcEEEECCcccCcChHHHHHHH------cCCCEEEeCCCCC-hHHH-------ccC-----CCceEEECCCCHHHH
Confidence 34468888854431122233666665 489999998 543 3322 221 222333446799999
Q ss_pred HHHHHhhcC
Q 033246 87 VQKLEEYVP 95 (123)
Q Consensus 87 l~~l~~~~~ 95 (123)
.+.|.....
T Consensus 315 a~~i~~l~~ 323 (359)
T PRK09922 315 VGKLNKVIS 323 (359)
T ss_pred HHHHHHHHh
Confidence 999988753
No 135
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=39.31 E-value=21 Score=27.06 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=26.3
Q ss_pred CchHHHHHHHhcCEEEEc-----CCchhhHHHHHHHHHHHHhCCCCCcEEEEe
Q 033246 1 MHQRKAEMARNSDCFIAL-----PGGYGTLEELLEVITWAQLGIHDKPVGLIN 48 (123)
Q Consensus 1 M~eRK~~m~~~sDa~I~l-----PGG~GTLdEl~evlt~~qlg~~~kPiilln 48 (123)
|+.|.+.|+++||++|++ +||....-+...-... .++.||.++.
T Consensus 119 ~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~~----~~~y~i~~I~ 167 (177)
T PF06908_consen 119 LQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQE----QKGYPIDLID 167 (177)
T ss_dssp HHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHHH----HH---EEEE-
T ss_pred HHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHhh----ccCCeEEEec
Confidence 467999999999998886 5555554444444332 2367888886
No 136
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=39.26 E-value=1.2e+02 Score=22.76 Aligned_cols=67 Identities=21% Similarity=0.395 Sum_probs=37.6
Q ss_pred HHHHHhcCEEEEcCC---chhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC
Q 033246 6 AEMARNSDCFIALPG---GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 82 (123)
Q Consensus 6 ~~m~~~sDa~I~lPG---G~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd 82 (123)
...+..||++|. |. |+|.- ++|+++. ++|++..+..+ ...+++ ......+.-.++
T Consensus 261 ~~~~~~~d~~l~-~s~~e~~~~~--~lEa~a~------g~PvI~~~~~~-~~~~i~------------~~~~g~~~~~~~ 318 (364)
T cd03814 261 AAAYASADVFVF-PSRTETFGLV--VLEAMAS------GLPVVAPDAGG-PADIVT------------DGENGLLVEPGD 318 (364)
T ss_pred HHHHHhCCEEEE-CcccccCCcH--HHHHHHc------CCCEEEcCCCC-chhhhc------------CCcceEEcCCCC
Confidence 346778998764 54 33322 5677754 89999887653 222221 112233344556
Q ss_pred HHHHHHHHHhhc
Q 033246 83 AKELVQKLEEYV 94 (123)
Q Consensus 83 ~ee~l~~l~~~~ 94 (123)
++++.+.|....
T Consensus 319 ~~~l~~~i~~l~ 330 (364)
T cd03814 319 AEAFAAALAALL 330 (364)
T ss_pred HHHHHHHHHHHH
Confidence 666777666643
No 137
>PRK05920 aromatic acid decarboxylase; Validated
Probab=38.85 E-value=87 Score=24.27 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=51.1
Q ss_pred hcCEEEEcCCchhhHHHHHHHHHH--------HHhCCCCCcEEEEeCCCccHH-HHHHHHHHHHcCCC-CcccccceEEc
Q 033246 11 NSDCFIALPGGYGTLEELLEVITW--------AQLGIHDKPVGLINVDGYYNS-LLNFIDKAVDDGFI-SPSQRSILVSA 80 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdEl~evlt~--------~qlg~~~kPiilln~~gf~~~-l~~~l~~~~~~gfi-~~~~~~~i~~~ 80 (123)
.+|++||.|=-.+|+.-+.-=++- ..++ .++|+++.-.+-+..+ ..+-++.+.+.|.. -+.....+.--
T Consensus 93 ~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~-~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii~P~~g~y~~p 171 (204)
T PRK05920 93 RTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLK-ERRKLILVPRETPLSLIHLENMLKLAEAGAIILPAIPAFYHKP 171 (204)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHh-cCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEeCCcccccCCC
Confidence 589999999999999876532211 1122 4789999976534433 23445667777742 23333344556
Q ss_pred CCHHHHHHHHHh
Q 033246 81 PNAKELVQKLEE 92 (123)
Q Consensus 81 dd~ee~l~~l~~ 92 (123)
++.+++.+++-.
T Consensus 172 ~~~~~~~~f~~~ 183 (204)
T PRK05920 172 QTIDDLVDFVVA 183 (204)
T ss_pred CCHHHHHHHHHH
Confidence 677888888754
No 138
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=38.62 E-value=38 Score=26.20 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=29.9
Q ss_pred HHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCC
Q 033246 4 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG 51 (123)
Q Consensus 4 RK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~g 51 (123)
+-....+.+|.+|+ +||--.+.-++.+.+...++.|++++|.+.
T Consensus 164 ~~~~~~~~~Dlllv----iGTSl~v~p~~~l~~~~~~~~~~i~iN~~~ 207 (225)
T cd01411 164 EAIQAIEKADLLVI----VGTSFVVYPFAGLIDYRQAGANLIAINKEP 207 (225)
T ss_pred HHHHHHhcCCEEEE----ECcCCeehhHHHHHHHHhCCCeEEEECCCC
Confidence 34455677998777 567656666666554444678999999863
No 139
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=38.35 E-value=47 Score=27.86 Aligned_cols=43 Identities=35% Similarity=0.293 Sum_probs=27.7
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHH
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNS 55 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~ 55 (123)
..=|.+|++||+.||..=+.-- +.+++. +.++|=++..+.=..
T Consensus 179 ~~fD~vVva~gs~gT~AGl~~g--~~~~~~-~~~ViG~~v~~~~~~ 221 (323)
T COG2515 179 LKFDSVVVAPGSGGTHAGLLVG--LAQLGP-DVEVIGIDVSADPEK 221 (323)
T ss_pred cCCCEEEEeCCCcchHHHHHHH--hhhccC-CCceEEEeecCCHHH
Confidence 4458999999999999877643 344544 455555555443333
No 140
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=38.28 E-value=86 Score=23.48 Aligned_cols=37 Identities=11% Similarity=-0.042 Sum_probs=23.7
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
++....|++|+.|......++..+.+ .. +.|+|+++.
T Consensus 51 l~~~~vDgiIi~~~~~~~~~~~l~~~-----~~-~ipvV~~~~ 87 (271)
T cd06314 51 LIAEGVDGIAISPIDPKAVIPALNKA-----AA-GIKLITTDS 87 (271)
T ss_pred HHhcCCCEEEEecCChhHhHHHHHHH-----hc-CCCEEEecC
Confidence 44457899999996644344554333 23 678888864
No 141
>PRK12361 hypothetical protein; Provisional
Probab=38.27 E-value=58 Score=28.33 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=21.8
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEe
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 48 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln 48 (123)
.|+.-||=||+.|+...+. .++.|+.++-
T Consensus 300 ~Viv~GGDGTl~ev~~~l~-----~~~~~lgiiP 328 (547)
T PRK12361 300 IVIACGGDGTVTEVASELV-----NTDITLGIIP 328 (547)
T ss_pred EEEEECCCcHHHHHHHHHh-----cCCCCEEEec
Confidence 4556899999999998774 2356777774
No 142
>PRK13054 lipid kinase; Reviewed
Probab=38.22 E-value=50 Score=26.24 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=23.2
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
.|+.-||=||+.|+...+.-.. ..++.|+.++-.
T Consensus 59 ~vvv~GGDGTl~evv~~l~~~~-~~~~~~lgiiP~ 92 (300)
T PRK13054 59 TVIAGGGDGTINEVATALAQLE-GDARPALGILPL 92 (300)
T ss_pred EEEEECCccHHHHHHHHHHhhc-cCCCCcEEEEeC
Confidence 5667899999999998874211 123457887743
No 143
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=38.14 E-value=94 Score=27.02 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=31.5
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCC
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFI 69 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi 69 (123)
+++| |-=||.||..|.. .+.+|++.+-. |+|.... .+++.+.|.-
T Consensus 365 v~~f-ItHGG~~s~~Eal---------~~GvP~v~iP~--~~DQ~~N-a~rv~~~G~G 409 (507)
T PHA03392 365 VKAF-VTQGGVQSTDEAI---------DALVPMVGLPM--MGDQFYN-TNKYVELGIG 409 (507)
T ss_pred CCEE-EecCCcccHHHHH---------HcCCCEEECCC--CccHHHH-HHHHHHcCcE
Confidence 4555 4568899988876 46899999973 6676654 4667777743
No 144
>PLN02327 CTP synthase
Probab=37.98 E-value=22 Score=31.89 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=21.2
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEE
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVG 45 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPii 45 (123)
+..+|++ ++|||+|+-.---.+........+++|+.
T Consensus 360 L~~~DGI-vvpGGfG~~~~~G~i~ai~~are~~iP~L 395 (557)
T PLN02327 360 LKGADGI-LVPGGFGDRGVEGKILAAKYARENKVPYL 395 (557)
T ss_pred hccCCEE-EeCCCCCCcccccHHHHHHHHHHcCCCEE
Confidence 4556765 89999977544433333333334577875
No 145
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=37.70 E-value=2e+02 Score=22.60 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=39.1
Q ss_pred HHHHHhcCEEEEcCC--chhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCH
Q 033246 6 AEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNA 83 (123)
Q Consensus 6 ~~m~~~sDa~I~lPG--G~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ 83 (123)
..+...||+++..+. |+|.. ++|+++. .+|+|..+..| ...+ +..+ ...+.+..|+
T Consensus 294 ~~~l~~ad~~l~~s~~E~~g~~--~lEAma~------G~PvI~s~~~~-~~e~-------i~~~------~~g~~~~~~~ 351 (392)
T cd03805 294 ELLLSSARALLYTPSNEHFGIV--PLEAMYA------GKPVIACNSGG-PLET-------VVDG------ETGFLCEPTP 351 (392)
T ss_pred HHHHhhCeEEEECCCcCCCCch--HHHHHHc------CCCEEEECCCC-cHHH-------hccC------CceEEeCCCH
Confidence 456788999886433 33432 4677754 89999998753 2322 2111 1223344577
Q ss_pred HHHHHHHHhhc
Q 033246 84 KELVQKLEEYV 94 (123)
Q Consensus 84 ee~l~~l~~~~ 94 (123)
+++.+.|....
T Consensus 352 ~~~a~~i~~l~ 362 (392)
T cd03805 352 EEFAEAMLKLA 362 (392)
T ss_pred HHHHHHHHHHH
Confidence 77777776643
No 146
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.63 E-value=97 Score=23.02 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=24.7
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
++-...|++|+.|....+.++..+.+. ..+.|+|+++.
T Consensus 51 ~~~~~~dgiii~~~~~~~~~~~l~~~~-----~~~ipvV~~~~ 88 (277)
T cd06319 51 AIDKGVSGIIISPTNSSAAVTLLKLAA-----QAKIPVVIADI 88 (277)
T ss_pred HHhcCCCEEEEcCCchhhhHHHHHHHH-----HCCCCEEEEec
Confidence 345678999998865544555554432 24678888875
No 147
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=37.60 E-value=89 Score=25.57 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCC
Q 033246 22 YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFI 69 (123)
Q Consensus 22 ~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi 69 (123)
+=|+.|++|.+....+....-|.|-+... ||=|.+++ +++.|.+
T Consensus 208 ~~~l~eilE~LmN~l~~~p~DpYv~i~~~-~WPpyie~---LlR~GIa 251 (268)
T PF11802_consen 208 LITLREILEILMNKLLDSPHDPYVKIDDS-FWPPYIEL---LLRSGIA 251 (268)
T ss_pred hhHHHHHHHHHHHHhcCCCCCCceecCcc-cChHHHHH---HHHcCCe
Confidence 45789999999888887555599988774 99999887 5666644
No 148
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=37.47 E-value=26 Score=28.53 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=42.6
Q ss_pred HHHHHHhcCEEEE----cCCchhhHHHHHHHHHHHHhCCC--CCcEEEEeC------CCccHHHHHHHHHHHHcCCCCcc
Q 033246 5 KAEMARNSDCFIA----LPGGYGTLEELLEVITWAQLGIH--DKPVGLINV------DGYYNSLLNFIDKAVDDGFISPS 72 (123)
Q Consensus 5 K~~m~~~sDa~I~----lPGG~GTLdEl~evlt~~qlg~~--~kPiilln~------~gf~~~l~~~l~~~~~~gfi~~~ 72 (123)
|.=++|.||.||| .||---|..|+-..+.+.+-... ..||+.... +..|+.+.++.+.+.+.|.+..+
T Consensus 162 KaGimEiaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~~~~r 241 (266)
T PF03308_consen 162 KAGIMEIADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESGELEER 241 (266)
T ss_dssp -TTHHHH-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hhhhhhhccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcchHHHH
Confidence 4557899999999 58888889998888877554422 346666322 23566666655667776655433
No 149
>PRK13057 putative lipid kinase; Reviewed
Probab=37.40 E-value=47 Score=26.20 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=23.6
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
.| .|+.-||=||+.|+...+.- .+.|+.++-.
T Consensus 51 ~d-~iiv~GGDGTv~~v~~~l~~-----~~~~lgiiP~ 82 (287)
T PRK13057 51 VD-LVIVGGGDGTLNAAAPALVE-----TGLPLGILPL 82 (287)
T ss_pred CC-EEEEECchHHHHHHHHHHhc-----CCCcEEEECC
Confidence 35 56678999999999987741 3578888753
No 150
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=37.32 E-value=58 Score=23.95 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=17.5
Q ss_pred hcCEEEEcCCchhhHHHHHHHHHHHH
Q 033246 11 NSDCFIALPGGYGTLEELLEVITWAQ 36 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdEl~evlt~~q 36 (123)
.+.+++|.+++.||++++...+...+
T Consensus 129 ~a~vIlV~~~~~g~i~~~l~~~~~~~ 154 (199)
T PF13500_consen 129 GAPVILVASGRLGTINHTLLTIEALK 154 (199)
T ss_dssp T-EEEEEEESSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35667788888888888875555544
No 151
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.28 E-value=82 Score=23.49 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=30.5
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC----------CccHHHHHHHHHHHHcC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD----------GYYNSLLNFIDKAVDDG 67 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~----------gf~~~l~~~l~~~~~~g 67 (123)
+.....|++|+.|+..-+ +++.+.+ ...++|+|+++.. +++..-....+++.+.|
T Consensus 51 l~~~~vdgii~~~~~~~~-~~~~~~~-----~~~~ipvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~~G 115 (269)
T cd06281 51 FEQRRMDGIIIAPGDERD-PELVDAL-----ASLDLPIVLLDRDMGGGADAVLFDHAAGMRQAVEYLISLG 115 (269)
T ss_pred HHHcCCCEEEEecCCCCc-HHHHHHH-----HhCCCCEEEEecccCCCCCEEEECcHHHHHHHHHHHHHCC
Confidence 344578999999874322 3333322 2346788888642 23333344445666654
No 152
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=37.22 E-value=1.4e+02 Score=22.82 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=41.1
Q ss_pred HHHHHhcCEEEEcC---CchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC
Q 033246 6 AEMARNSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 82 (123)
Q Consensus 6 ~~m~~~sDa~I~lP---GG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd 82 (123)
..++..||++|... .|+|+ =++|+++. .+|+|..+..+ ...++. .+ ....+.-.+|
T Consensus 258 ~~~l~~ad~~i~ps~~~e~~~~--~l~EA~a~------G~PvI~~~~~~-~~e~i~-------~~-----~~g~~~~~~~ 316 (355)
T cd03819 258 PAAYALADIVVSASTEPEAFGR--TAVEAQAM------GRPVIASDHGG-ARETVR-------PG-----ETGLLVPPGD 316 (355)
T ss_pred HHHHHhCCEEEecCCCCCCCch--HHHHHHhc------CCCEEEcCCCC-cHHHHh-------CC-----CceEEeCCCC
Confidence 34577799877633 35553 35777764 89999988753 333322 11 1233344678
Q ss_pred HHHHHHHHHhh
Q 033246 83 AKELVQKLEEY 93 (123)
Q Consensus 83 ~ee~l~~l~~~ 93 (123)
++++.+.|...
T Consensus 317 ~~~l~~~i~~~ 327 (355)
T cd03819 317 AEALAQALDQI 327 (355)
T ss_pred HHHHHHHHHHH
Confidence 88888888543
No 153
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=37.21 E-value=72 Score=26.75 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=33.6
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHh
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEE 92 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l~~l~~ 92 (123)
..+-=||.|++.|.. .+.+|++.+-. |.|+..+ .+.+.+.|.--.-+.+.+ +.+++.+.|++
T Consensus 344 ~fitHgG~~s~~Ea~---------~~gvP~l~~P~--~~DQ~~n-a~~~~~~G~g~~l~~~~~----~~~~l~~ai~~ 405 (500)
T PF00201_consen 344 LFITHGGLNSTQEAL---------YHGVPMLGIPL--FGDQPRN-AARVEEKGVGVVLDKNDL----TEEELRAAIRE 405 (500)
T ss_dssp EEEES--HHHHHHHH---------HCT--EEE-GC--STTHHHH-HHHHHHTTSEEEEGGGC-----SHHHHHHHHHH
T ss_pred eeeeccccchhhhhh---------hccCCccCCCC--cccCCcc-ceEEEEEeeEEEEEecCC----cHHHHHHHHHH
Confidence 556678888888876 36899999863 5555554 467788886432232222 34555554444
No 154
>PRK10307 putative glycosyl transferase; Provisional
Probab=37.21 E-value=2e+02 Score=23.26 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=36.4
Q ss_pred HHHHHHHhcCEEEEc--CCchh--hHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEE
Q 033246 4 RKAEMARNSDCFIAL--PGGYG--TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 79 (123)
Q Consensus 4 RK~~m~~~sDa~I~l--PGG~G--TLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~ 79 (123)
....+...||++|+. .++.| ...-++|.++ ..+||+..+..|- .+-+.++ ..|++ +=
T Consensus 296 ~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama------~G~PVi~s~~~g~--~~~~~i~---~~G~~--------~~ 356 (412)
T PRK10307 296 RLPALLKMADCHLLPQKAGAADLVLPSKLTNMLA------SGRNVVATAEPGT--ELGQLVE---GIGVC--------VE 356 (412)
T ss_pred HHHHHHHhcCEeEEeeccCcccccCcHHHHHHHH------cCCCEEEEeCCCc--hHHHHHh---CCcEE--------eC
Confidence 345567888887652 12221 1223445554 3899998876442 1222222 23332 22
Q ss_pred cCCHHHHHHHHHhh
Q 033246 80 APNAKELVQKLEEY 93 (123)
Q Consensus 80 ~dd~ee~l~~l~~~ 93 (123)
.+|++++.+.|.+.
T Consensus 357 ~~d~~~la~~i~~l 370 (412)
T PRK10307 357 PESVEALVAAIAAL 370 (412)
T ss_pred CCCHHHHHHHHHHH
Confidence 45677776666554
No 155
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=37.17 E-value=57 Score=25.66 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=22.7
Q ss_pred HHHHhcCEEEEcCCchhhHHH--HHHHHHHHH-hCCCCCcEEEEeCCC
Q 033246 7 EMARNSDCFIALPGGYGTLEE--LLEVITWAQ-LGIHDKPVGLINVDG 51 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdE--l~evlt~~q-lg~~~kPiilln~~g 51 (123)
-+...+|++++ |+||+.+ +-.+....+ ...+++|+| ++..+
T Consensus 50 ~~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pvV-lDpv~ 93 (263)
T PRK09355 50 EMAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPVV-LDPVG 93 (263)
T ss_pred HHHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCEE-ECCcc
Confidence 34678899999 5555543 322332222 234578965 56654
No 156
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=36.82 E-value=94 Score=24.39 Aligned_cols=69 Identities=7% Similarity=0.100 Sum_probs=46.1
Q ss_pred hHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhC-CCCCcEEEEeCCC-ccHHHHHHHHHHHHcCCCCcccccceEEc
Q 033246 3 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDG-YYNSLLNFIDKAVDDGFISPSQRSILVSA 80 (123)
Q Consensus 3 eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg-~~~kPiilln~~g-f~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 80 (123)
+|.....+.||.+|+ +||--.+.-+..+...- .+..|++++|.+. .++. ...+.+.
T Consensus 170 ~~~~~~~~~aDl~lv----iGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~------------------~~~~~i~ 227 (244)
T PRK14138 170 REAIRLSSKASLMIV----MGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD------------------IATLKYN 227 (244)
T ss_pred HHHHHHHhcCCEEEE----eCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc------------------ceeEEEe
Confidence 344556788999999 57766666555554443 4678999999741 2221 1235788
Q ss_pred CCHHHHHHHHHhh
Q 033246 81 PNAKELVQKLEEY 93 (123)
Q Consensus 81 dd~ee~l~~l~~~ 93 (123)
.+..|++..|.++
T Consensus 228 ~~~~~~l~~l~~~ 240 (244)
T PRK14138 228 MDVVEFANRVMSE 240 (244)
T ss_pred CCHHHHHHHHHHH
Confidence 8899998888664
No 157
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=36.72 E-value=1.1e+02 Score=23.71 Aligned_cols=47 Identities=28% Similarity=0.263 Sum_probs=28.4
Q ss_pred EEcCCchhhHHHHHHHHHHHHhCCCCCc--EEEEeCCCccHHHHHHHHHHHHcCCC
Q 033246 16 IALPGGYGTLEELLEVITWAQLGIHDKP--VGLINVDGYYNSLLNFIDKAVDDGFI 69 (123)
Q Consensus 16 I~lPGG~GTLdEl~evlt~~qlg~~~kP--iilln~~gf~~~l~~~l~~~~~~gfi 69 (123)
|+..|| |+++|+++.+.. +=|| -++.|.- ==+.+...++.+.+.|+-
T Consensus 106 iFIGGg-~~i~~ile~~~~-----~l~~ggrlV~nai-tlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 106 IFIGGG-GNIEEILEAAWE-----RLKPGGRLVANAI-TLETLAKALEALEQLGGR 154 (187)
T ss_pred EEECCC-CCHHHHHHHHHH-----HcCcCCeEEEEee-cHHHHHHHHHHHHHcCCc
Confidence 455666 999999998853 2244 5666653 233344445566666654
No 158
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.72 E-value=89 Score=23.15 Aligned_cols=38 Identities=21% Similarity=0.123 Sum_probs=24.9
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+.-+..|++|+.|.-..+..+....+. ..+.|+|++|.
T Consensus 52 l~~~~vdgiii~~~~~~~~~~~l~~~~-----~~~iPvV~~~~ 89 (275)
T cd06317 52 LIAQKVDGIILWPTDGQAYIPGLRKAK-----QAGIPVVITNS 89 (275)
T ss_pred HHHcCCCEEEEecCCccccHHHHHHHH-----HCCCcEEEeCC
Confidence 344578999998866554445543332 34679999875
No 159
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=36.67 E-value=17 Score=27.78 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=10.3
Q ss_pred HhcCEEEEcCCchhhH
Q 033246 10 RNSDCFIALPGGYGTL 25 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTL 25 (123)
+.+|+ |++|||.+|-
T Consensus 38 ~~~D~-LILPGG~~t~ 52 (179)
T PRK13526 38 DSIDR-LVIPGGESTT 52 (179)
T ss_pred hCCCE-EEECCChHHH
Confidence 34454 6789998874
No 160
>PLN02275 transferase, transferring glycosyl groups
Probab=36.50 E-value=1.3e+02 Score=24.25 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=39.5
Q ss_pred HHHHHHHhcCEEEEc-CC--chhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEc
Q 033246 4 RKAEMARNSDCFIAL-PG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSA 80 (123)
Q Consensus 4 RK~~m~~~sDa~I~l-PG--G~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~ 80 (123)
.-..++..||+||.. +. |.|--.=++|+++. .+||+..+..| - ..++++| .... ++
T Consensus 299 ~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~------G~PVVa~~~gg-~-------~eiv~~g-----~~G~--lv 357 (371)
T PLN02275 299 DYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGC------GLPVCAVSYSC-I-------GELVKDG-----KNGL--LF 357 (371)
T ss_pred HHHHHHHhCCEEEEeccccccccccHHHHHHHHC------CCCEEEecCCC-h-------HHHccCC-----CCeE--EE
Confidence 334568889999863 12 23334456777764 99999988654 1 1223221 1122 23
Q ss_pred CCHHHHHHHHHh
Q 033246 81 PNAKELVQKLEE 92 (123)
Q Consensus 81 dd~ee~l~~l~~ 92 (123)
+|++++.+.|.+
T Consensus 358 ~~~~~la~~i~~ 369 (371)
T PLN02275 358 SSSSELADQLLE 369 (371)
T ss_pred CCHHHHHHHHHH
Confidence 578888777754
No 161
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=36.47 E-value=95 Score=24.29 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=25.9
Q ss_pred CEEEEcCCchhhHHHHHHHHHHH-HhC-CCCCcEEEEeCCCcc
Q 033246 13 DCFIALPGGYGTLEELLEVITWA-QLG-IHDKPVGLINVDGYY 53 (123)
Q Consensus 13 Da~I~lPGG~GTLdEl~evlt~~-qlg-~~~kPiilln~~gf~ 53 (123)
-+.|+|||| .|...+++.++-. +-+ ..=+.+.+++.+.+|
T Consensus 34 ~~~i~lsgG-stP~~~y~~L~~~~~~~~i~w~~v~~f~~DEr~ 75 (259)
T TIGR00502 34 PFVLGLPTG-GTPIGTYKQLIELHQAGKISFQNVTTFNMDEYA 75 (259)
T ss_pred ceEEEEcCC-CChHHHHHHHHHHhhccCCchhHeEEEeCeecC
Confidence 358999999 3555666666432 112 223678888888887
No 162
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=36.21 E-value=1e+02 Score=22.78 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=23.5
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+....|++|+.|+--.+..++.+.+. ..+.|+|+++.
T Consensus 52 ~~~~vdgii~~~~~~~~~~~~i~~~~-----~~~ipvV~~~~ 88 (273)
T cd06305 52 IAQKVDAIIIQHGRAEVLKPWVKRAL-----DAGIPVVAFDV 88 (273)
T ss_pred HHcCCCEEEEecCChhhhHHHHHHHH-----HcCCCEEEecC
Confidence 44578999999875555555544432 23567777764
No 163
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=36.12 E-value=62 Score=26.31 Aligned_cols=38 Identities=26% Similarity=0.268 Sum_probs=26.6
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+..|+|||.= |.-||+|....+++.- .-.+|||||.+.
T Consensus 71 ~~~~GvVVtH-GTDTme~tA~~Ls~~l-~~l~kPVVlTGa 108 (313)
T PF00710_consen 71 DDYDGVVVTH-GTDTMEETAFFLSLLL-DNLDKPVVLTGA 108 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHHE-ES-SSEEEEE--
T ss_pred HhcCeEEEec-CchHHHHHHHHHHHHh-cCCCCCEEEeCC
Confidence 3488988885 6899999999888643 223799999974
No 164
>cd00489 Barstar_like Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it, thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=35.97 E-value=97 Score=20.50 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=28.4
Q ss_pred chHHHHHHHhcCEEEEcCCchh-hHHHHHHHHHHHHhCCCCCcEEEE
Q 033246 2 HQRKAEMARNSDCFIALPGGYG-TLEELLEVITWAQLGIHDKPVGLI 47 (123)
Q Consensus 2 ~eRK~~m~~~sDa~I~lPGG~G-TLdEl~evlt~~qlg~~~kPiill 47 (123)
.++...+...|.++ -+|+.+| .+|=+.+.++= ....|+.+.
T Consensus 9 ~~~~~f~~~~~~~l-~fp~~fG~NlDAl~D~L~~----~~~~p~~i~ 50 (85)
T cd00489 9 ADWEDFHARLKKKL-GFPDYYGHNLDALWDCLTG----LVEEPLVLR 50 (85)
T ss_pred CCHHHHHHHHHHHh-CCccccCCCHHHHHHHHcC----CCCCCeEEE
Confidence 44566677778888 7898888 78888888752 333565554
No 165
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=35.91 E-value=67 Score=25.98 Aligned_cols=29 Identities=28% Similarity=0.549 Sum_probs=21.9
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCCCCCc-EEEEe
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGIHDKP-VGLIN 48 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~~~kP-iilln 48 (123)
.|+.-||=||+.|+...+. .++.| +.++-
T Consensus 61 ~via~GGDGTv~evingl~-----~~~~~~LgilP 90 (301)
T COG1597 61 TVIAAGGDGTVNEVANGLA-----GTDDPPLGILP 90 (301)
T ss_pred EEEEecCcchHHHHHHHHh-----cCCCCceEEec
Confidence 6777899999999998885 24555 66663
No 166
>PRK00861 putative lipid kinase; Reviewed
Probab=35.81 E-value=52 Score=26.05 Aligned_cols=30 Identities=33% Similarity=0.538 Sum_probs=22.1
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
.|+.-||=||+.|+...+.- ++.|+.++-.
T Consensus 60 ~vv~~GGDGTl~evv~~l~~-----~~~~lgviP~ 89 (300)
T PRK00861 60 LIIASGGDGTLSAVAGALIG-----TDIPLGIIPR 89 (300)
T ss_pred EEEEECChHHHHHHHHHHhc-----CCCcEEEEcC
Confidence 45568999999999987741 3567777643
No 167
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=35.80 E-value=63 Score=26.54 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=26.6
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhC-CCCCcEEEEeCC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVD 50 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg-~~~kPiilln~~ 50 (123)
-++..||+|.+|.-.. +++.-+.....- ..++||.++|+.
T Consensus 242 ~~v~e~dg~LvlGsSL----~v~Sg~r~i~~a~~~k~pi~IvNIG 282 (305)
T KOG2683|consen 242 EKVKECDGFLVLGSSL----MVLSGFRFIRHAHEKKKPIAIVNIG 282 (305)
T ss_pred HHHhccCceEEechhH----HHHHHHHHHHHHHhhcCcEEEEecC
Confidence 3578899999985444 444444433332 348999999985
No 168
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=35.66 E-value=1.1e+02 Score=23.48 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=23.3
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
....|++|+.|....++.+..+.+. ..+.|+++++.
T Consensus 80 ~~~~dgiii~~~~~~~~~~~l~~~~-----~~~ipvV~~~~ 115 (295)
T PRK10653 80 VRGTKILLINPTDSDAVGNAVKMAN-----QANIPVITLDR 115 (295)
T ss_pred HcCCCEEEEcCCChHHHHHHHHHHH-----HCCCCEEEEcc
Confidence 4468999998876665555544443 23568888764
No 169
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=35.43 E-value=91 Score=23.26 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=22.4
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
....|++|+.|.-....++....+. ..+.|++++|.
T Consensus 54 ~~~vdgiii~~~~~~~~~~~~~~~~-----~~~ipvV~~~~ 89 (270)
T cd06308 54 RQGVDLLIISPNEAAPLTPVVEEAY-----RAGIPVILLDR 89 (270)
T ss_pred HhCCCEEEEecCchhhchHHHHHHH-----HCCCCEEEeCC
Confidence 4468999998865444445444332 24678888864
No 170
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=35.30 E-value=78 Score=24.90 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=38.3
Q ss_pred HHHhcCEEEEcCC--chhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 033246 8 MARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKE 85 (123)
Q Consensus 8 m~~~sDa~I~lPG--G~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee 85 (123)
+...||++|...- |+|. =+.|+++ +.+|+|..+....-.. ++. ......+.=..|+++
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~--~~lEAma------~G~PvI~~~~~~g~~~-------~v~-----~~~~G~lv~~~d~~~ 334 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGL--SLMEALS------HGLPVISYDVNYGPSE-------IIE-----DGENGYLVPKGDIEA 334 (372)
T ss_pred HHhhhhEEEecccccccCh--HHHHHHh------CCCCEEEecCCCCcHH-------Hcc-----cCCCceEeCCCcHHH
Confidence 4566888776542 4442 3666665 4899999986511121 121 112222232358888
Q ss_pred HHHHHHhhcC
Q 033246 86 LVQKLEEYVP 95 (123)
Q Consensus 86 ~l~~l~~~~~ 95 (123)
+.+.|.....
T Consensus 335 la~~i~~ll~ 344 (372)
T cd04949 335 LAEAIIELLN 344 (372)
T ss_pred HHHHHHHHHc
Confidence 8888877643
No 171
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=35.19 E-value=1.5e+02 Score=24.68 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=40.3
Q ss_pred HHHHHHHhcCEEEEcC--CchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC
Q 033246 4 RKAEMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 81 (123)
Q Consensus 4 RK~~m~~~sDa~I~lP--GG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d 81 (123)
....++..||+||.-- .|+|. =++|+++. .+|||..+..|. ..+++ .. .......++-.+
T Consensus 324 ev~~~~~~aDv~V~pS~~E~~g~--~vlEAmA~------G~PVI~s~~gg~-~eiv~-------~~--~~~~~G~lv~~~ 385 (465)
T PLN02871 324 ELSQAYASGDVFVMPSESETLGF--VVLEAMAS------GVPVVAARAGGI-PDIIP-------PD--QEGKTGFLYTPG 385 (465)
T ss_pred HHHHHHHHCCEEEECCcccccCc--HHHHHHHc------CCCEEEcCCCCc-Hhhhh-------cC--CCCCceEEeCCC
Confidence 4456788899988532 24443 26677764 899999887542 22221 10 001122223345
Q ss_pred CHHHHHHHHHhh
Q 033246 82 NAKELVQKLEEY 93 (123)
Q Consensus 82 d~ee~l~~l~~~ 93 (123)
|++++.+.|...
T Consensus 386 d~~~la~~i~~l 397 (465)
T PLN02871 386 DVDDCVEKLETL 397 (465)
T ss_pred CHHHHHHHHHHH
Confidence 777777766654
No 172
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.04 E-value=1.1e+02 Score=24.61 Aligned_cols=32 Identities=38% Similarity=0.452 Sum_probs=23.5
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
+| +|+.=||=||+.+... +. ..+.||+-+|..
T Consensus 58 ~d-~vi~iGGDGTlL~a~~-~~-----~~~~pi~gIn~G 89 (277)
T PRK03708 58 VD-FIIAIGGDGTILRIEH-KT-----KKDIPILGINMG 89 (277)
T ss_pred CC-EEEEEeCcHHHHHHHH-hc-----CCCCeEEEEeCC
Confidence 45 5556699999999886 32 247899989873
No 173
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.72 E-value=1.3e+02 Score=22.55 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=23.2
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+..+..|++|+.|....+..+..+.+. ..+.|+++++.
T Consensus 53 l~~~~vdgiii~~~~~~~~~~~l~~~~-----~~~ipvV~~~~ 90 (271)
T cd06312 53 AIAAKPDGIVVTIPDPDALDPAIKRAV-----AAGIPVISFNA 90 (271)
T ss_pred HHHhCCCEEEEeCCChHHhHHHHHHHH-----HCCCeEEEeCC
Confidence 445679999999964333334333332 24578888874
No 174
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=34.63 E-value=88 Score=26.51 Aligned_cols=86 Identities=20% Similarity=0.291 Sum_probs=55.3
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHh----CCCCCcEEEEeC--CCccH--HHHHHHHHHHHcC--CCCcccccc---
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQL----GIHDKPVGLINV--DGYYN--SLLNFIDKAVDDG--FISPSQRSI--- 76 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~ql----g~~~kPiilln~--~gf~~--~l~~~l~~~~~~g--fi~~~~~~~--- 76 (123)
..+|++|+.|=-.+|+.-+.-=++-.-+ -...+|+++.-. +..|. ...+.+..+.+.| +++|....+
T Consensus 77 ~~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~ 156 (390)
T TIGR00521 77 KWADLILIAPATANTISKIAHGIADDLVSTTALAASAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACG 156 (390)
T ss_pred cccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHhCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccccc
Confidence 4689999999999999877532211111 112399999976 45784 3455566777777 445542222
Q ss_pred ---eEEcCCHHHHHHHHHhhcC
Q 033246 77 ---LVSAPNAKELVQKLEEYVP 95 (123)
Q Consensus 77 ---i~~~dd~ee~l~~l~~~~~ 95 (123)
.--..++++++..+.+...
T Consensus 157 ~~g~g~~~~~~~i~~~v~~~~~ 178 (390)
T TIGR00521 157 DEGKGRLAEPETIVKAAEREFS 178 (390)
T ss_pred cccCCCCCCHHHHHHHHHHHHh
Confidence 1336789999999987643
No 175
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=34.38 E-value=1.4e+02 Score=19.84 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhCC--CCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC-HHHHHHHHHhh
Q 033246 24 TLEELLEVITWAQLGI--HDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN-AKELVQKLEEY 93 (123)
Q Consensus 24 TLdEl~evlt~~qlg~--~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd-~ee~l~~l~~~ 93 (123)
++.-+..++...|-.. .-+.+.++|..-+...++..+.. |+++...+.+.++++ .+++.+.+...
T Consensus 81 ~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~-----~l~~~~~~ki~~~~~~~~~L~~~i~~~ 148 (157)
T cd00170 81 DPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKP-----FLSEKTRKKIVFLGSDKEELLKYIDKE 148 (157)
T ss_pred hHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHH-----hcCHhhhhhEEEecCCHHHHHhhCChh
Confidence 3345555565555553 35799999987555666654433 677788888999988 77777766543
No 176
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=34.34 E-value=1.9e+02 Score=22.06 Aligned_cols=69 Identities=14% Similarity=0.035 Sum_probs=39.7
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKE 85 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee 85 (123)
..+...||++|.-.---|.--=++|+++. .+|+|..+..| ....+ .+ ....+...+++++
T Consensus 261 ~~~~~~adi~v~ps~~E~~~~~~lEAma~------G~PvI~s~~~~-~~~~i---~~----------~~~~~~~~~~~~~ 320 (358)
T cd03812 261 PELLQAMDVFLFPSLYEGLPLVLIEAQAS------GLPCILSDTIT-KEVDL---TD----------LVKFLSLDESPEI 320 (358)
T ss_pred HHHHHhcCEEEecccccCCCHHHHHHHHh------CCCEEEEcCCc-hhhhh---cc----------CccEEeCCCCHHH
Confidence 44677889887532211222336777764 99999988754 22211 11 1223344456788
Q ss_pred HHHHHHhhc
Q 033246 86 LVQKLEEYV 94 (123)
Q Consensus 86 ~l~~l~~~~ 94 (123)
+.+.|.+..
T Consensus 321 ~a~~i~~l~ 329 (358)
T cd03812 321 WAEEILKLK 329 (358)
T ss_pred HHHHHHHHH
Confidence 888887754
No 177
>PRK13059 putative lipid kinase; Reviewed
Probab=34.34 E-value=57 Score=25.95 Aligned_cols=32 Identities=31% Similarity=0.727 Sum_probs=22.9
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
.|+.-||=||+.|+...+.- .+ .+.|+.++-.
T Consensus 59 ~vi~~GGDGTv~evv~gl~~--~~-~~~~lgviP~ 90 (295)
T PRK13059 59 YILIAGGDGTVDNVVNAMKK--LN-IDLPIGILPV 90 (295)
T ss_pred EEEEECCccHHHHHHHHHHh--cC-CCCcEEEECC
Confidence 56678999999999987742 22 2467887753
No 178
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.89 E-value=99 Score=17.93 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=20.3
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCC
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGI 39 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~ 39 (123)
.|.+|...|.|.++..++.-...++
T Consensus 3 ~v~~~d~pG~L~~i~~~l~~~~~nI 27 (65)
T cd04882 3 AVEVPDKPGGLHEILQILSEEGINI 27 (65)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCCh
Confidence 5789999999999999997655543
No 179
>PRK06186 hypothetical protein; Validated
Probab=33.60 E-value=30 Score=27.45 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=28.6
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHH
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDK 62 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~ 62 (123)
++..|++++ |||+|.=.-=-.+.+...-..+++|+.=+- -|+=--++++-++
T Consensus 51 l~~~dgilv-pgGfg~rg~~Gki~ai~~Are~~iP~LGIC-lGmQ~avIe~arn 102 (229)
T PRK06186 51 LAGFDGIWC-VPGSPYRNDDGALTAIRFARENGIPFLGTC-GGFQHALLEYARN 102 (229)
T ss_pred HhhCCeeEe-CCCCCcccHhHHHHHHHHHHHcCCCeEeec-hhhHHHHHHHHhh
Confidence 556788765 666997554444444444445788854221 2443345555443
No 180
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.54 E-value=1.2e+02 Score=22.47 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=23.1
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
++.+..|++|+.|-..-...+.++.+. ..+.|+|+++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~~~~~~-----~~~ipvV~~~~ 88 (267)
T cd06322 51 FITKKVDAIVLSPVDSKGIRAAIAKAK-----KAGIPVITVDI 88 (267)
T ss_pred HHHcCCCEEEEcCCChhhhHHHHHHHH-----HCCCCEEEEcc
Confidence 455679999998865333344443332 23567877775
No 181
>PRK00105 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed
Probab=33.13 E-value=63 Score=26.97 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=25.3
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHhCC---CCCcEEEE
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQLGI---HDKPVGLI 47 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~qlg~---~~kPiill 47 (123)
++-|-..-=||+.|+|||+..-+...|-.. .++|.+++
T Consensus 11 ~~~d~l~kP~gsLG~Le~la~~la~iqg~~~p~~~~~~~~v 51 (335)
T PRK00105 11 ARIDQLTKPPGSLGRLEELAVQLAGIQGTEPPRVERPAVVV 51 (335)
T ss_pred HHHHccCCCCcchHHHHHHHHHHHHhhCCCCCCCCCCEEEE
Confidence 344555556999999999998777666542 24555444
No 182
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=32.98 E-value=65 Score=20.64 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=32.4
Q ss_pred ccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHhh
Q 033246 52 YYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEY 93 (123)
Q Consensus 52 f~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l~~l~~~ 93 (123)
=|+.+...|+.+.+.|++.. ....+.+++--.++++.++++
T Consensus 32 ~~~~~~~yL~~L~~~gLI~~-~~~~Y~lTekG~~~l~~l~~~ 72 (77)
T PF14947_consen 32 NYSTLKKYLKELEEKGLIKK-KDGKYRLTEKGKEFLEELEEL 72 (77)
T ss_dssp -HHHHHHHHHHHHHTTSEEE-ETTEEEE-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCeeC-CCCEEEECccHHHHHHHHHHH
Confidence 37778888999999999944 667888888888888888765
No 183
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=32.84 E-value=91 Score=26.48 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=54.3
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHH----hCCCCCcEEEEeC--CCccHH--HHHHHHHHHHcC--CCCcccccce-
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQ----LGIHDKPVGLINV--DGYYNS--LLNFIDKAVDDG--FISPSQRSIL- 77 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~q----lg~~~kPiilln~--~gf~~~--l~~~l~~~~~~g--fi~~~~~~~i- 77 (123)
.+.+|++||.|=-.+|+.-+..=++-.- +-..++|++++-. ...|.. ..+.++.+.+.| +++|....+-
T Consensus 80 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~la~ 159 (399)
T PRK05579 80 AKWADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLAC 159 (399)
T ss_pred ccccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccccC
Confidence 3469999999999999988763221111 1123899999862 235553 334456777777 4455332211
Q ss_pred -----EEcCCHHHHHHHHHhhcC
Q 033246 78 -----VSAPNAKELVQKLEEYVP 95 (123)
Q Consensus 78 -----~~~dd~ee~l~~l~~~~~ 95 (123)
--..+|++++..+.+...
T Consensus 160 ~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 160 GDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred CCcCCCCCCCHHHHHHHHHHHhh
Confidence 125689999999987643
No 184
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=32.75 E-value=48 Score=24.33 Aligned_cols=35 Identities=26% Similarity=0.103 Sum_probs=17.3
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHh-CCCCCcEEEE
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLI 47 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~ql-g~~~kPiill 47 (123)
-|++ +++||.|+....-....+.+. -..++|+.=+
T Consensus 40 ~dgi-il~GG~~~~~~~~~~~~~~~~~~~~~~PvlGI 75 (178)
T cd01744 40 PDGI-FLSNGPGDPALLDEAIKTVRKLLGKKIPIFGI 75 (178)
T ss_pred CCEE-EECCCCCChhHhHHHHHHHHHHHhCCCCEEEE
Confidence 4664 556676765553333322221 1346887644
No 185
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.42 E-value=1.4e+02 Score=22.34 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=22.4
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
...|++|+.|.....+.+..+.+. ..+.|+++++.
T Consensus 59 ~~vDgiii~~~~~~~~~~~i~~~~-----~~gIpvV~~d~ 93 (274)
T cd06311 59 RKIDALVILPFESAPLTQPVAKAK-----KAGIFVVVVDR 93 (274)
T ss_pred cCCCEEEEeCCCchhhHHHHHHHH-----HCCCeEEEEcC
Confidence 468999999876555555554432 23567777654
No 186
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.30 E-value=1.4e+02 Score=24.54 Aligned_cols=52 Identities=25% Similarity=0.342 Sum_probs=35.6
Q ss_pred hcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC--Ccc-----HHHHHHHHHHHHcCC
Q 033246 11 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD--GYY-----NSLLNFIDKAVDDGF 68 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~--gf~-----~~l~~~l~~~~~~gf 68 (123)
.+|.+|+ =||=||+-..+..+ ...++||+=+|.. ||. +.+.+.++.+.+..|
T Consensus 68 ~~Dlvi~-iGGDGTlL~aar~~-----~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 68 SMKFAIV-LGGDGTVLSAARQL-----APCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred CcCEEEE-EeCcHHHHHHHHHh-----cCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCc
Confidence 3465555 58899998766544 2457899888874 576 566777777776665
No 187
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=32.26 E-value=2.7e+02 Score=22.65 Aligned_cols=87 Identities=22% Similarity=0.296 Sum_probs=53.7
Q ss_pred HHHHhcCEEEE--------cCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC---CccHHHHHHHHHHHHcCCCCccc--
Q 033246 7 EMARNSDCFIA--------LPGGYGTLEELLEVITWAQLGIHDKPVGLINVD---GYYNSLLNFIDKAVDDGFISPSQ-- 73 (123)
Q Consensus 7 ~m~~~sDa~I~--------lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~---gf~~~l~~~l~~~~~~gfi~~~~-- 73 (123)
.+++.|..+|+ -|+.+||.+++-+...- .+....+.+-|... +-=+...+|++++....-..+..
T Consensus 113 ~i~~~~kv~v~f~D~~Q~i~~~e~~~~~~l~~~~~~--~~~~~~~~~~L~~q~R~~~~~~~~~wI~~ll~~~~~~~~~~~ 190 (352)
T PF09848_consen 113 EIIKRAKVVVFFYDENQSIRPSEIGTLENLEEIAEN--LGIEVRHFFELKTQFRCHGSKEYIDWIDNLLDNKNISPKPFN 190 (352)
T ss_pred HHHhcCCEEEEEEccccEeecccCCCHHHHHHHHHh--cCCccccCcCcCcceecCCCHHHHHHHHHHHhccccCccccc
Confidence 34555776665 48899998887666543 22212222112110 11256788998888766554432
Q ss_pred ---ccceEEcCCHHHHHHHHHhhcC
Q 033246 74 ---RSILVSAPNAKELVQKLEEYVP 95 (123)
Q Consensus 74 ---~~~i~~~dd~ee~l~~l~~~~~ 95 (123)
.=.+.+++|++++-+.|+....
T Consensus 191 ~~~~yd~~~f~~~~~~~~~i~~k~~ 215 (352)
T PF09848_consen 191 PDENYDFRVFDSPEEMKEAIKEKNK 215 (352)
T ss_pred cCCceeEEEECCHHHHHHHHHHHhc
Confidence 2367999999999999987543
No 188
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=32.21 E-value=1.7e+02 Score=20.05 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=37.6
Q ss_pred HHhCCCCCcEEEEeCCCccHHHHHHHHH-HHHcCCCCcccccceEEcCCHHHHHHHHHhhc
Q 033246 35 AQLGIHDKPVGLINVDGYYNSLLNFIDK-AVDDGFISPSQRSILVSAPNAKELVQKLEEYV 94 (123)
Q Consensus 35 ~qlg~~~kPiilln~~gf~~~l~~~l~~-~~~~gfi~~~~~~~i~~~dd~ee~l~~l~~~~ 94 (123)
...+-+-+|++.++.+|.-+.+++.++. +-....|.-.-...- -++..|+.+.|+...
T Consensus 10 r~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~--~~~~~e~a~~i~~~~ 68 (95)
T TIGR00253 10 RGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATED--REDKTLIAEALVKET 68 (95)
T ss_pred HHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCC--hhHHHHHHHHHHHHH
Confidence 3344457999999999999999999975 555444433322111 245667777776643
No 189
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.87 E-value=1.2e+02 Score=23.06 Aligned_cols=38 Identities=8% Similarity=0.141 Sum_probs=22.9
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
++....|++|+.|...--.++..+.+. ..+.|+|+++.
T Consensus 52 ~~~~~~dgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 89 (294)
T cd06316 52 TISQKPDIIISIPVDPVSTAAAYKKVA-----EAGIKLVFMDN 89 (294)
T ss_pred HHHhCCCEEEEcCCCchhhhHHHHHHH-----HcCCcEEEecC
Confidence 455678999998755322345443332 24568887764
No 190
>PRK11096 ansB L-asparaginase II; Provisional
Probab=31.85 E-value=67 Score=26.85 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=36.2
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC-----CCccHHHHHHHHH
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV-----DGYYNSLLNFIDK 62 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~-----~gf~~~l~~~l~~ 62 (123)
+..|+|||. -|.=||+|....+++. ++ ..||||+.+. ....|...+++..
T Consensus 99 ~~~dGiVVt-HGTDTme~tA~~Ls~~-~~-~~kPVVlTGAmrP~~~~~sDg~~NL~~A 153 (347)
T PRK11096 99 DKTDGFVIT-HGTDTMEETAYFLDLT-VK-CDKPVVLVGAMRPSTAMSADGPLNLYNA 153 (347)
T ss_pred CCCCEEEEe-CCCchHHHHHHHHHHh-cc-CCCCEEEeCCCCCCCCcCCchHHHHHHH
Confidence 346778877 4689999999999885 44 4899999984 3356666665543
No 191
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=31.69 E-value=1.5e+02 Score=21.74 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=21.1
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
++.+..|++|+.|-......+....+. ..+.|+++++.
T Consensus 51 ~~~~~~dgii~~~~~~~~~~~~l~~l~-----~~~ipvv~~~~ 88 (268)
T cd06323 51 LITRGVDAIIINPTDSDAVVPAVKAAN-----EAGIPVFTIDR 88 (268)
T ss_pred HHHcCCCEEEEcCCChHHHHHHHHHHH-----HCCCcEEEEcc
Confidence 345578999997644332223333332 24567777755
No 192
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=31.66 E-value=2.2e+02 Score=21.22 Aligned_cols=43 Identities=30% Similarity=0.356 Sum_probs=24.9
Q ss_pred chHHHHHHHhcCEEEEc-CCch--hhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 2 HQRKAEMARNSDCFIAL-PGGY--GTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 2 ~eRK~~m~~~sDa~I~l-PGG~--GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
..|.+.-++-||+-++| .|-. || ++...++ ..|.||+.+++..
T Consensus 54 ~~RT~~NV~DsDgTlI~~~g~l~GGt--~lT~~~a----~~~~KP~l~i~~~ 99 (145)
T PF12694_consen 54 RQRTEWNVRDSDGTLIFTRGELTGGT--ALTVEFA----RKHGKPCLHIDLS 99 (145)
T ss_dssp HHHHHHHHHTSSEEEEEESSS--HHH--HHHHHHH----HHTT--EEEETS-
T ss_pred HHHHHhhhhhcCeEEEEecCCCCcHH--HHHHHHH----HHhCCCEEEEecC
Confidence 36888889999995444 4433 44 2322222 3679999999653
No 193
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=31.48 E-value=81 Score=22.49 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=24.6
Q ss_pred CEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 13 DCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 13 Da~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
..+|+++||+-.-+|..+.+. +..++|.+..+
T Consensus 63 ~~VIa~GGG~~~~~~~~~~L~------~~g~vI~L~~~ 94 (158)
T PF01202_consen 63 NCVIACGGGIVLKEENRELLK------ENGLVIYLDAD 94 (158)
T ss_dssp SEEEEE-TTGGGSHHHHHHHH------HHSEEEEEE--
T ss_pred cEEEeCCCCCcCcHHHHHHHH------hCCEEEEEeCC
Confidence 679999999999999888886 46788888754
No 194
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=31.36 E-value=31 Score=22.06 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=11.8
Q ss_pred EEEEcCCchhhHHHH
Q 033246 14 CFIALPGGYGTLEEL 28 (123)
Q Consensus 14 a~I~lPGG~GTLdEl 28 (123)
+++++++|+||=-=+
T Consensus 2 IlvvC~~Gi~TS~~~ 16 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMV 16 (90)
T ss_dssp EEEEESSSSHHHHHH
T ss_pred EEEECCChHHHHHHH
Confidence 578999999995443
No 195
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.31 E-value=1.2e+02 Score=23.36 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=21.7
Q ss_pred hcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 11 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
..|++|+.|... ..++..+.+ ...+.|+|++|.
T Consensus 58 ~vdgiIi~~~~~-~~~~~~~~~-----~~~giPvV~~~~ 90 (305)
T cd06324 58 KPDALIFTNEKS-VAPELLRLA-----EGAGVKLFLVNS 90 (305)
T ss_pred CCCEEEEcCCcc-chHHHHHHH-----HhCCCeEEEEec
Confidence 699999998653 344544333 234678888874
No 196
>TIGR03160 cobT_DBIPRT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase. Members of this family are nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, an enzyme of cobalamin biosynthesis.
Probab=31.31 E-value=70 Score=26.68 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=21.0
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHhC
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQLG 38 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~qlg 38 (123)
++-|-..-=||+.|.|||+..-+.-.|-.
T Consensus 10 ~~~d~l~kP~gsLG~Le~la~~la~~q~~ 38 (333)
T TIGR03160 10 ARQDSLTKPPGSLGRLEELAVQLAGIQGT 38 (333)
T ss_pred HHHHccCCCCcchHHHHHHHHHHHHhhCC
Confidence 33444445599999999999877666655
No 197
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.27 E-value=1.5e+02 Score=22.08 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=22.8
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
.....|++|+.|.-.-..++..+.+. ..+.|+|++|.
T Consensus 54 ~~~~~dgiIi~~~~~~~~~~~i~~~~-----~~~ipvv~~~~ 90 (271)
T cd06321 54 IAAKVDLILLNAVDSKGIAPAVKRAQ-----AAGIVVVAVDV 90 (271)
T ss_pred HHhCCCEEEEeCCChhHhHHHHHHHH-----HCCCeEEEecC
Confidence 45578999998854433445443332 23568888875
No 198
>PF03454 MoeA_C: MoeA C-terminal region (domain IV); InterPro: IPR005111 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this domain is uncertain. The structure of this domain is known [] and forms an incomplete beta barrel.; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1T3E_A 2FU3_A 2FTS_A 1WU2_A 1XI8_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A 2NQM_B ....
Probab=31.27 E-value=17 Score=22.49 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=12.9
Q ss_pred HHhcCEEEEcCCchhhH
Q 033246 9 ARNSDCFIALPGGYGTL 25 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTL 25 (123)
+-.||+++++|.|...+
T Consensus 45 l~~an~l~~ip~~~~~~ 61 (72)
T PF03454_consen 45 LARANGLIVIPEGVEGL 61 (72)
T ss_dssp HHHBSEEEEEETT-SEE
T ss_pred HhhCCEEEEeCCCCCcc
Confidence 45799999999987653
No 199
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=31.26 E-value=2.3e+02 Score=21.24 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=24.8
Q ss_pred HHHHHHhcCEEEEcCC--chhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 5 KAEMARNSDCFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 5 K~~m~~~sDa~I~lPG--G~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
...+...||++|.-.. |+|+ =++|+++. .+|++..+..
T Consensus 272 ~~~~~~~ad~~l~~s~~e~~~~--~~~Ea~~~------g~PvI~~~~~ 311 (374)
T cd03817 272 LPDYYKAADLFVFASTTETQGL--VLLEAMAA------GLPVVAVDAP 311 (374)
T ss_pred HHHHHHHcCEEEecccccCcCh--HHHHHHHc------CCcEEEeCCC
Confidence 3456778999775432 3333 26667754 8999998864
No 200
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=31.09 E-value=58 Score=26.33 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=20.2
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHH
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITW 34 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~ 34 (123)
.+.+..+.-|+.-||+||.++..+++.+
T Consensus 169 ~I~e~~~vpVI~egGI~tpeda~~Amel 196 (248)
T cd04728 169 IIIERADVPVIVDAGIGTPSDAAQAMEL 196 (248)
T ss_pred HHHHhCCCcEEEeCCCCCHHHHHHHHHc
Confidence 4455567777888888888888777753
No 201
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=30.86 E-value=1.5e+02 Score=22.49 Aligned_cols=64 Identities=17% Similarity=0.058 Sum_probs=38.9
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHh-CCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHH
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAK 84 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~ql-g~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~e 84 (123)
....+.+|.+|++. |--.+.-+..+... ..++.|++++|.+.-.-+ ....+.+..+..
T Consensus 159 ~~~~~~~dl~lvlG----Tsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~-----------------~~~~~~i~g~~~ 217 (224)
T cd01412 159 VEALAKADLFLVIG----TSGVVYPAAGLPEEAKERGARVIEINPEPTPLS-----------------PIADFAFRGKAG 217 (224)
T ss_pred HHHHHcCCEEEEEC----cCccchhHHHHHHHHHHCCCeEEEECCCCCCCC-----------------CcCCEEEECCHH
Confidence 34456899999864 54334444444332 245789999998632211 233557778899
Q ss_pred HHHHHH
Q 033246 85 ELVQKL 90 (123)
Q Consensus 85 e~l~~l 90 (123)
|++..|
T Consensus 218 ~~l~~l 223 (224)
T cd01412 218 EVLPAL 223 (224)
T ss_pred HHHHHh
Confidence 888765
No 202
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=30.83 E-value=1.2e+02 Score=23.22 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=28.3
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHH-HHHHHHHHHHcCCC
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNS-LLNFIDKAVDDGFI 69 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~-l~~~l~~~~~~gfi 69 (123)
+|+=-+|.||.-|.. . ..||.+++-.+..-|- =.++-+++.++|++
T Consensus 83 lVIsHAGaGS~letL---~------l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL 129 (170)
T KOG3349|consen 83 LVISHAGAGSCLETL---R------LGKPLIVVVNDSLMDNHQLELAKQLAEEGYL 129 (170)
T ss_pred EEEecCCcchHHHHH---H------cCCCEEEEeChHhhhhHHHHHHHHHHhcCcE
Confidence 566678999976554 3 3799888755433332 23333567777765
No 203
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=30.73 E-value=81 Score=24.91 Aligned_cols=43 Identities=26% Similarity=0.314 Sum_probs=32.0
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhC-CCCCcEEEEeCCCccHH
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVDGYYNS 55 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg-~~~kPiilln~~gf~~~ 55 (123)
..+.|+|+|| +|...+++.|.-..-+ ..=+-|.+++.+.++.+
T Consensus 32 ~~~~l~LsgG-sTP~~~ye~L~~~~~~~~~w~~v~~f~~DEr~vp 75 (238)
T COG0363 32 GRAVLALSGG-STPLALYEALVKLPQGQLDWSKVTIFNLDERVVP 75 (238)
T ss_pred CcEEEEECCC-CCHHHHHHHHHhhhccCCCchheEEEeccccccC
Confidence 3789999999 7999999988754322 33467888888777765
No 204
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=30.70 E-value=9.7 Score=30.58 Aligned_cols=51 Identities=22% Similarity=0.434 Sum_probs=27.9
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHc-CCC
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDD-GFI 69 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~-gfi 69 (123)
.||+++.-||+|+. ++.+-+.+..+..++| ++++ | ++.-.++..+... |.+
T Consensus 63 i~aI~~~rGGyg~~-rlL~~ld~~~i~~~pK--~~iG---y-SDiTaL~~al~~~~g~~ 114 (284)
T PF02016_consen 63 IDAIWCARGGYGAN-RLLPYLDYDAIRKNPK--IFIG---Y-SDITALHNALYAKTGLV 114 (284)
T ss_dssp EEEEEES--SS-GG-GGGGGCHHHHHHHSG---EEEE-----GGGHHHHHHHHHHHTBE
T ss_pred CCEEEEeeccccHH-HHHhcccccccccCCC--EEEE---e-cchHHHHHHHHHhCCCe
Confidence 57899999999986 4666666766766655 5553 3 3443433344443 443
No 205
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=30.64 E-value=28 Score=22.51 Aligned_cols=14 Identities=50% Similarity=0.845 Sum_probs=11.9
Q ss_pred cCCchhhHHHHHHH
Q 033246 18 LPGGYGTLEELLEV 31 (123)
Q Consensus 18 lPGG~GTLdEl~ev 31 (123)
.|||.|.+..+++.
T Consensus 44 ~~GG~G~~~~l~~~ 57 (84)
T PF09369_consen 44 VPGGAGYAERLFER 57 (84)
T ss_pred CCCchhhHhhhcCh
Confidence 49999999988765
No 206
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=30.57 E-value=2.1e+02 Score=22.75 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=32.1
Q ss_pred cCEEEEcCCchh--hHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHH
Q 033246 12 SDCFIALPGGYG--TLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVD 65 (123)
Q Consensus 12 sDa~I~lPGG~G--TLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~ 65 (123)
+|+++++|--+- +-+|+++-+.-.- ...+.||++||..|+.=+ .+.+..+.+
T Consensus 95 ad~v~~~pP~y~~~~~~~i~~~f~~v~-~~~~~pi~lYn~~g~~l~-~~~l~~L~~ 148 (289)
T cd00951 95 ADGILLLPPYLTEAPQEGLYAHVEAVC-KSTDLGVIVYNRANAVLT-ADSLARLAE 148 (289)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHH-hcCCCCEEEEeCCCCCCC-HHHHHHHHh
Confidence 688888887663 5566666553321 134789999997765433 344455554
No 207
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=30.48 E-value=43 Score=26.12 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=40.0
Q ss_pred HHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCH
Q 033246 4 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNA 83 (123)
Q Consensus 4 RK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ 83 (123)
+.....+.||.+|+ +||=-.+.=+..+.+.-....|++++|.+. .+ + +....-.+.+..+.
T Consensus 168 ~~~~~~~~aDlllv----vGTSl~V~pa~~l~~~~~~~~~~v~iN~~~--~~------------~-~~~~~~d~~~~~~~ 228 (235)
T cd01408 168 HMEEDKEEADLLIV----IGTSLKVAPFASLPSRVPSEVPRVLINREP--VG------------H-LGKRPFDVALLGDC 228 (235)
T ss_pred HHHHHHhcCCEEEE----ECCCCeeccHHHHHHHHhCCCcEEEEeCCC--CC------------C-CCCCCcCEEEeCCH
Confidence 34455778999999 466555555544443333568999999752 00 0 00122235778888
Q ss_pred HHHHHH
Q 033246 84 KELVQK 89 (123)
Q Consensus 84 ee~l~~ 89 (123)
+|++..
T Consensus 229 ~~~l~~ 234 (235)
T cd01408 229 DDGVRE 234 (235)
T ss_pred HHHHHh
Confidence 888764
No 208
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=30.38 E-value=1.4e+02 Score=22.70 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=40.4
Q ss_pred HHHHHhcCEEEEc---CCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC
Q 033246 6 AEMARNSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 82 (123)
Q Consensus 6 ~~m~~~sDa~I~l---PGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd 82 (123)
..+...||++|.. +-|+|.- ++|+++. ++|+|..+..| ...++ +.| ..-.++++
T Consensus 238 ~~~~~~~d~~v~ps~~~E~~~~~--~lEAma~------G~PvI~~~~~~-~~e~i-------~~~-------~~g~l~~~ 294 (335)
T cd03802 238 AELLGNARALLFPILWEEPFGLV--MIEAMAC------GTPVIAFRRGA-VPEVV-------EDG-------VTGFLVDS 294 (335)
T ss_pred HHHHHhCcEEEeCCcccCCcchH--HHHHHhc------CCCEEEeCCCC-chhhe-------eCC-------CcEEEeCC
Confidence 4567889998875 3567753 7777764 89999998753 23222 111 11133455
Q ss_pred HHHHHHHHHhh
Q 033246 83 AKELVQKLEEY 93 (123)
Q Consensus 83 ~ee~l~~l~~~ 93 (123)
++++.+.|...
T Consensus 295 ~~~l~~~l~~l 305 (335)
T cd03802 295 VEELAAAVARA 305 (335)
T ss_pred HHHHHHHHHHH
Confidence 88888777665
No 209
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.31 E-value=1.5e+02 Score=22.43 Aligned_cols=38 Identities=18% Similarity=0.072 Sum_probs=23.8
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+.....|++|++|......++..+.+. ..+.|+++++.
T Consensus 52 l~~~~vdgiil~~~~~~~~~~~~~~~~-----~~~iPvV~~d~ 89 (280)
T cd06315 52 AIALKPDGIVLGGVDAAELQAELELAQ-----KAGIPVVGWHA 89 (280)
T ss_pred HHHcCCCEEEEcCCCHHHHHHHHHHHH-----HCCCCEEEecC
Confidence 445678999999866554454443332 23567777764
No 210
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=30.10 E-value=65 Score=24.22 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=19.4
Q ss_pred cCEEEEcCCchhh--HHHHHHHHHH-HHhC---CCCCcEEEEe
Q 033246 12 SDCFIALPGGYGT--LEELLEVITW-AQLG---IHDKPVGLIN 48 (123)
Q Consensus 12 sDa~I~lPGG~GT--LdEl~evlt~-~qlg---~~~kPiilln 48 (123)
+| .|++|||.-| ++.|...-.+ ..+. ...+||+-.-
T Consensus 41 ~D-~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgIC 82 (198)
T cd03130 41 AD-GLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAEC 82 (198)
T ss_pred CC-EEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEc
Confidence 45 6789999877 3554332111 1122 2367876554
No 211
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=30.08 E-value=45 Score=27.61 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=24.0
Q ss_pred CchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHH
Q 033246 20 GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFID 61 (123)
Q Consensus 20 GG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~ 61 (123)
.+.||+||.++..+- =.+.++ .||++++.+.+
T Consensus 152 ~~~~~~e~~fe~F~~--------G~~~~G--p~~dHVl~~W~ 183 (297)
T KOG1584|consen 152 PGPGTFEEFFESFCN--------GVVPYG--PWWDHVLGYWE 183 (297)
T ss_pred CCCCcHHHHHHHHhC--------CcCCcC--ChHHHHHHHHH
Confidence 466789999999973 345555 58999888876
No 212
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=29.93 E-value=1e+02 Score=24.01 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=22.8
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
.+.+.+|++++ -||+|+-+.+.++.... ..+.+|++ ++.+
T Consensus 88 ~~~~~~davvi-g~Gl~~~~~~~~l~~~~--~~~~~pvV-lDa~ 127 (272)
T TIGR00196 88 ELLERYDVVVI-GPGLGQDPSFKKAVEEV--LELDKPVV-LDAD 127 (272)
T ss_pred hhhccCCEEEE-cCCCCCCHHHHHHHHHH--HhcCCCEE-EEhH
Confidence 34567788777 44588866544444322 23477864 4444
No 213
>PF01989 DUF126: Protein of unknown function DUF126; InterPro: IPR002840 These archaebacterial proteins have no known function.; PDB: 2HI6_A.
Probab=29.88 E-value=30 Score=23.25 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=18.3
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
..++-+++||+|-|+--==.-.+.+.+.|. -|..++..
T Consensus 26 si~gkILv~p~~kGSt~gs~vl~~l~~~g~--aPaAiI~~ 63 (82)
T PF01989_consen 26 SIAGKILVFPSGKGSTVGSYVLYELKKNGT--APAAIIFR 63 (82)
T ss_dssp B-TTSEEEES--S--SS-TTHHHHHHHHT---S-SEEEES
T ss_pred cccCeEEEecCCCCccHHHHHHHHHHHCCC--CCeEEEEc
Confidence 357889999999998764444444444444 45555543
No 214
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=29.66 E-value=85 Score=26.81 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=29.1
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+..|+|||+= |.=||+|....++++--.. |||++.+.
T Consensus 120 ~~~~G~VV~H-GTDTLe~tAffls~~~~t~--KPIVitGa 156 (368)
T KOG0503|consen 120 KSYDGIVVTH-GTDTLEETAFFLSFTINTL--KPIVITGA 156 (368)
T ss_pred cccCcEEEEc-CcchHHHHHHHHHHHHhcC--CcEEEecc
Confidence 4578999986 5789999999888754334 99999975
No 215
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=29.56 E-value=71 Score=26.69 Aligned_cols=48 Identities=23% Similarity=0.249 Sum_probs=33.6
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC-----CccHHHHHHHHH
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD-----GYYNSLLNFIDK 62 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~-----gf~~~l~~~l~~ 62 (123)
.|+|||.= |.-||+|....+++..- .+|||||.+.- .-.|...++...
T Consensus 106 ~~GiVVtH-GTDTme~tA~~Lsl~l~--~~kPVVlTGAmrP~~~~~sDg~~NL~~A 158 (349)
T TIGR00520 106 YDGIVITH-GTDTLEETAYFLDLTVK--SDKPVVIVGAMRPSTSVSADGPMNLYNA 158 (349)
T ss_pred CCEEEEeC-CcccHHHHHHHHHHHcC--CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 47888875 58999999999886432 38999999651 234555555443
No 216
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=29.47 E-value=77 Score=24.02 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=22.6
Q ss_pred CE-EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHH
Q 033246 13 DC-FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNS 55 (123)
Q Consensus 13 Da-~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~ 55 (123)
|+ +++.|.-.. ++++-.+... ...+|+|++|. -|++
T Consensus 99 ~~~vvv~p~~~~-l~~~e~~~~~----~~~rpvvl~Np--~l~~ 135 (209)
T PF09353_consen 99 DILVVVAPSPQE-LDDVEKLCEA----AGGRPVVLLNP--QLED 135 (209)
T ss_pred CEEEEEECChhh-HHHHHHHHHh----cCCCeEEEEec--cccc
Confidence 66 455555444 7777766643 12389999995 4653
No 217
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=29.32 E-value=34 Score=22.24 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=10.2
Q ss_pred EEEEcCCchhh
Q 033246 14 CFIALPGGYGT 24 (123)
Q Consensus 14 a~I~lPGG~GT 24 (123)
++++.|.|+||
T Consensus 3 ilvvCg~G~gt 13 (87)
T cd05567 3 IVFACDAGMGS 13 (87)
T ss_pred EEEECCCCccH
Confidence 68999999999
No 218
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=29.12 E-value=1.7e+02 Score=23.23 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=32.7
Q ss_pred CchHHHHHHHhc-CE--EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCC
Q 033246 1 MHQRKAEMARNS-DC--FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG 51 (123)
Q Consensus 1 M~eRK~~m~~~s-Da--~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~g 51 (123)
|.+|...|...+ |. ++++|...+=.-.+.++..-.+. ..+|++.++...
T Consensus 135 i~~~l~km~~~~aDivKiAvm~~~~~DvL~ll~~~~~~~~--~~~p~i~i~MG~ 186 (231)
T COG0710 135 IIERLDKMESLGADIVKIAVMPQSKEDVLDLLEATREFKE--AEKPVITISMGK 186 (231)
T ss_pred HHHHHHHHHhhCCCeEEEEecCCCHHHHHHHHHHHHhccc--cCCCEEEEecCC
Confidence 457788888887 76 77778776655555554432222 689999988753
No 219
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=29.09 E-value=2.4e+02 Score=22.12 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=39.5
Q ss_pred CCCcEEEEeCCC--ccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHhhcC
Q 033246 40 HDKPVGLINVDG--YYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVP 95 (123)
Q Consensus 40 ~~kPiilln~~g--f~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l~~l~~~~~ 95 (123)
.+.||+..+.-. =++..+++++...+.|--.-.....+.-.+||.+++..+.....
T Consensus 195 ~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~ 252 (267)
T PRK07226 195 CPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVH 252 (267)
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHh
Confidence 368999998644 46778887777777664433444555567889999998887653
No 220
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=28.93 E-value=55 Score=25.26 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=20.6
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHH
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVIT 33 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt 33 (123)
.+.+.++.-|+.-||++|++++.++..
T Consensus 178 ~i~~~~~~pvia~GGi~s~ed~~~l~~ 204 (221)
T TIGR00734 178 KTLELSEHPVMLGGGISGVEDLELLKE 204 (221)
T ss_pred HHHhhCCCCEEEeCCCCCHHHHHHHHH
Confidence 345556777899999999999987553
No 221
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=28.84 E-value=47 Score=25.88 Aligned_cols=33 Identities=24% Similarity=0.601 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHH
Q 033246 28 LLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAV 64 (123)
Q Consensus 28 l~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~ 64 (123)
+.|++.|.+ ..+|+|==|. |||+.|++.=+++.
T Consensus 124 LreAy~~vK---a~RpiIRPN~-GFw~QLi~YE~qL~ 156 (198)
T KOG1718|consen 124 LREAYHWVK---ARRPIIRPNV-GFWRQLIDYEQQLF 156 (198)
T ss_pred HHHHHHHHH---hhCceeCCCc-cHHHHHHHHHHHhc
Confidence 345555543 3679888877 79999998533444
No 222
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.77 E-value=1.4e+02 Score=17.98 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=21.6
Q ss_pred EEEEcCCchhhHHHHHHHHHHHHhCC
Q 033246 14 CFIALPGGYGTLEELLEVITWAQLGI 39 (123)
Q Consensus 14 a~I~lPGG~GTLdEl~evlt~~qlg~ 39 (123)
..|.+|...|.|.++.+++.-..+++
T Consensus 4 i~v~v~d~pG~La~v~~~l~~~~inI 29 (66)
T cd04908 4 LSVFLENKPGRLAAVTEILSEAGINI 29 (66)
T ss_pred EEEEEcCCCChHHHHHHHHHHCCCCE
Confidence 46889999999999999998655553
No 223
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=28.77 E-value=1.4e+02 Score=24.23 Aligned_cols=45 Identities=29% Similarity=0.592 Sum_probs=29.0
Q ss_pred hHHHHHHHh------cCEEEEcCCchhhHHHHHHHHHHHHhCCCC--CcEEEEe
Q 033246 3 QRKAEMARN------SDCFIALPGGYGTLEELLEVITWAQLGIHD--KPVGLIN 48 (123)
Q Consensus 3 eRK~~m~~~------sDa~I~lPGG~GTLdEl~evlt~~qlg~~~--kPiilln 48 (123)
+|-.-|.+. .||+++.-||+|+. ++.+-+.+..+..++ .|=++++
T Consensus 52 ~Ra~dL~~a~a~~dpi~aI~~~rGGyg~~-rlLp~Ld~~~i~~~~k~~PK~~iG 104 (305)
T PRK11253 52 ERLADLNSLADLTTPNTIVLAVRGGYGAS-RLLAGIDWQGLAARQQDDPLLIVG 104 (305)
T ss_pred HHHHHHHHHHhcCCCccEEEEecccCCHh-HhhhhCCHHHHhhhhccCCCEEEE
Confidence 455555543 57999999999986 466666666665422 2545564
No 224
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=28.77 E-value=2.3e+02 Score=22.08 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=39.5
Q ss_pred CCCcEEEEeCCC--ccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHhhc
Q 033246 40 HDKPVGLINVDG--YYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYV 94 (123)
Q Consensus 40 ~~kPiilln~~g--f~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l~~l~~~~ 94 (123)
.+.||+..+.-. =++.+.+.+..+.+.|--.-.....+.-.+||.++++.+.+..
T Consensus 191 ~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~l~~~i 247 (258)
T TIGR01949 191 CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKAVCKIV 247 (258)
T ss_pred CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHHHHHHH
Confidence 368998877533 4677777777777777554455566667789999999887753
No 225
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=28.60 E-value=1.5e+02 Score=22.87 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=24.4
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
++.+..|++|+.|...-.+.+....+ ...+.|+|++|.
T Consensus 53 l~~~~vdgiii~~~~~~~~~~~~~~~-----~~~giPvV~~~~ 90 (303)
T cd01539 53 ALAKGVDLLAVNLVDPTAAQTVINKA-----KQKNIPVIFFNR 90 (303)
T ss_pred HHHcCCCEEEEecCchhhHHHHHHHH-----HHCCCCEEEeCC
Confidence 45567999999997644444444333 124679998875
No 226
>PRK13337 putative lipid kinase; Reviewed
Probab=28.59 E-value=1e+02 Score=24.48 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=22.5
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEe
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 48 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln 48 (123)
.|+.-||=||+.|+...+.- . .++.|+.++-
T Consensus 60 ~vvv~GGDGTl~~vv~gl~~--~-~~~~~lgiiP 90 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIAE--K-ENRPKLGIIP 90 (304)
T ss_pred EEEEEcCCCHHHHHHHHHhh--C-CCCCcEEEEC
Confidence 57788999999999987732 1 1245787774
No 227
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=28.50 E-value=1.7e+02 Score=20.15 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=23.7
Q ss_pred HHHHhcCEEEEc-C-CchhhHHHHHHHHHHHHh-C--CCCCcEEEEeC
Q 033246 7 EMARNSDCFIAL-P-GGYGTLEELLEVITWAQL-G--IHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~l-P-GG~GTLdEl~evlt~~ql-g--~~~kPiilln~ 49 (123)
..+..+|++|++ . ----+++++-..+.+.+. . ..+.|+++++.
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~n 114 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGN 114 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 346679997666 1 222455555443333332 1 23689988875
No 228
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=28.48 E-value=1.6e+02 Score=22.60 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=21.7
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
....|++|+.|...--++++++.+. ..+.|+++++.
T Consensus 54 ~~~~DgiIi~~~~~~~~~~~~~~~~-----~~~iPvV~v~~ 89 (298)
T cd06302 54 AQGVDAIAVVPNDPDALEPVLKKAR-----EAGIKVVTHDS 89 (298)
T ss_pred hcCCCEEEEecCCHHHHHHHHHHHH-----HCCCeEEEEcC
Confidence 3468999998754332344444332 34668888774
No 229
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=28.31 E-value=83 Score=23.52 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=13.5
Q ss_pred hcCEEEEcCCchhhHHHHHH
Q 033246 11 NSDCFIALPGGYGTLEELLE 30 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdEl~e 30 (123)
.+|+ |+||||.-+-+++..
T Consensus 37 ~~d~-lilpGg~~~~~~~~~ 55 (194)
T cd01750 37 DADL-IILPGSKDTIQDLAW 55 (194)
T ss_pred CCCE-EEECCCcchHHHHHH
Confidence 4575 779999977776543
No 230
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=28.20 E-value=1.6e+02 Score=23.75 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=39.3
Q ss_pred HHHHhcCEEEEc---CCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCH
Q 033246 7 EMARNSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNA 83 (123)
Q Consensus 7 ~m~~~sDa~I~l---PGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ 83 (123)
.....||++|+- ..|+| .=++|+++. .+|||..+.. . +|... ....-+.+.+|+
T Consensus 293 ~~~~~adv~v~Ps~~~eG~~--~~~lEAma~------G~PVV~t~~~-~-------------~~i~~-~~~~g~lv~~~~ 349 (397)
T TIGR03087 293 PYLAHAAVAVAPLRIARGIQ--NKVLEAMAM------AKPVVASPEA-A-------------EGIDA-LPGAELLVAADP 349 (397)
T ss_pred HHHHhCCEEEecccccCCcc--cHHHHHHHc------CCCEEecCcc-c-------------ccccc-cCCcceEeCCCH
Confidence 356789998752 24554 457778865 8999987642 1 11111 111234456899
Q ss_pred HHHHHHHHhhc
Q 033246 84 KELVQKLEEYV 94 (123)
Q Consensus 84 ee~l~~l~~~~ 94 (123)
+++.+.|....
T Consensus 350 ~~la~ai~~ll 360 (397)
T TIGR03087 350 ADFAAAILALL 360 (397)
T ss_pred HHHHHHHHHHH
Confidence 99888887653
No 231
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=28.03 E-value=99 Score=24.09 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=23.5
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHH--HHhCCCCCcEEE
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITW--AQLGIHDKPVGL 46 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~--~qlg~~~kPiil 46 (123)
.-+...+|++++=||=.+. |..+.+.. .....+++|+|+
T Consensus 44 ~~~~~~~~al~ik~G~l~~--~~~~~i~~~~~~~~~~~~pvVl 84 (249)
T TIGR00694 44 AELAKIAGALVINIGTLDK--ESIEAMIAAGKSANELGVPVVL 84 (249)
T ss_pred HHHHHHcCceEEeCCCCCH--HHHHHHHHHHHHHHhcCCCEEE
Confidence 4456889999999985544 33333322 123445788764
No 232
>PF02277 DBI_PRT: Phosphoribosyltransferase; InterPro: IPR003200 Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin []. It is one of the enzymes of the anaerobic pathway of cobalamin biosynthesis, and one of the four proteins (CobU, CobT, CobC, and CobS) involved in the synthesis of the lower ligand and the assembly of the nucleotide loop [, ]. Vitamin B12 (cobalamin) is used as a cofactor in a number of enzyme-catalysed reactions in bacteria, archaea and eukaryotes []. The biosynthetic pathway to adenosylcobalamin from its five-carbon precursor, 5-aminolaevulinic acid, can be divided into three sections: (1) the biosynthesis of uroporphyrinogen III from 5-aminolaevulinic acid; (2) the conversion of uroporphyrinogen III into the ring-contracted, deacylated intermediate precorrin 6 or cobalt-precorrin 6; and (3) the transformation of this intermediate to form adenosylcobalamin []. Cobalamin is synthesised by bacteria and archaea via two alternative routes that differ primarily in the steps of section 2 that lead to the contraction of the macrocycle and excision of the extruded carbon molecule (and its attached methyl group) []. One pathway (exemplified by Pseudomonas denitrificans) incorporates molecular oxygen into the macrocycle as a prerequisite to ring contraction, and has consequently been termed the aerobic pathway. The alternative, anaerobic, route (exemplified by Salmonella typhimurium) takes advantage of a chelated cobalt ion, in the absence of oxygen, to set the stage for ring contraction []. This entry represents bacterial- and archaeal-type nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase enzymes involved in dimethylbenzimidazole synthesis, as well as a group of proteins of unknown function. This function is essential to de novo cobalamin (vitamin B12) production in bacteria.; GO: 0008939 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1L5F_A 1L4E_A 1JHO_A 1L4F_A 1D0V_A 1L4N_A 1L4G_A 1JHR_A 1L5M_A 1JHA_A ....
Probab=28.03 E-value=50 Score=27.42 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=26.2
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHHhCC---CCCcE-EEEe
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQLGI---HDKPV-GLIN 48 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~---~~kPi-illn 48 (123)
.++-|..--=||+.|.|||+..-+...|=.. ..+|. +++-
T Consensus 17 ~~~~d~l~kP~gsLG~Le~~a~~la~i~g~~~p~~~~~~v~vfa 60 (327)
T PF02277_consen 17 RARLDNLTKPPGSLGRLEELAVRLAGIQGTPPPDLERKAVLVFA 60 (327)
T ss_dssp HHHHCTBSSSTTTTHHHHHHHHHHHCHHCGTTS---EEEEEEEE
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHhhCCCCCCcccceEEEEe
Confidence 3344555556899999999999888777654 24554 4443
No 233
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=27.94 E-value=1.5e+02 Score=22.31 Aligned_cols=38 Identities=8% Similarity=-0.060 Sum_probs=22.1
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
++....|++|++|--.-..+++.+. +..++.|+|+++.
T Consensus 50 ~~~~~~dgiii~~~~~~~~~~~~~~-----~~~~~iPvV~~~~ 87 (289)
T cd01540 50 LGAQGAKGFVICVPDVKLGPAIVAK-----AKAYNMKVVAVDD 87 (289)
T ss_pred HHHcCCCEEEEccCchhhhHHHHHH-----HHhCCCeEEEecC
Confidence 3445689999998542112333322 3345778888864
No 234
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.87 E-value=96 Score=23.07 Aligned_cols=60 Identities=15% Similarity=0.028 Sum_probs=32.2
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC--C----------ccHHHHHHHHHHHHcC
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD--G----------YYNSLLNFIDKAVDDG 67 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~--g----------f~~~l~~~l~~~~~~g 67 (123)
.+.....|++|++|............+ .++...+.|+|+++.. + ++..-....+++.+.|
T Consensus 50 ~l~~~~vdgiIi~~~~~~~~~~~~~~i--~~~~~~~ipvV~i~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~g 121 (273)
T cd06292 50 DLLARGVRGVVFISSLHADTHADHSHY--ERLAERGLPVVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLVALG 121 (273)
T ss_pred HHHHcCCCEEEEeCCCCCcccchhHHH--HHHHhCCCCEEEEcCCCCCCCCCCEEEECcHHHHHHHHHHHHHCC
Confidence 344566899999986654322222222 1122346778777642 1 2333445556677665
No 235
>PRK06756 flavodoxin; Provisional
Probab=27.77 E-value=2.1e+02 Score=19.89 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=39.8
Q ss_pred HHhcCEEEEc-CC-chhhHHH-HHHHHHHH-HhCCCCCcEEEEeCCC--cc--HHHHHHH-HHHHHcCCCCcccccceEE
Q 033246 9 ARNSDCFIAL-PG-GYGTLEE-LLEVITWA-QLGIHDKPVGLINVDG--YY--NSLLNFI-DKAVDDGFISPSQRSILVS 79 (123)
Q Consensus 9 ~~~sDa~I~l-PG-G~GTLdE-l~evlt~~-qlg~~~kPiilln~~g--f~--~~l~~~l-~~~~~~gfi~~~~~~~i~~ 79 (123)
+..+|++|+- |= |.|.+.. +...+... .....+||+++++..+ |. ..-...| +.+.+.|+---...-.+..
T Consensus 47 ~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~ 126 (148)
T PRK06756 47 LEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVEL 126 (148)
T ss_pred HhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEec
Confidence 3456775554 33 3455443 44444432 2345789999998733 22 2333334 4566666544344444455
Q ss_pred cCCHHH
Q 033246 80 APNAKE 85 (123)
Q Consensus 80 ~dd~ee 85 (123)
..+.++
T Consensus 127 ~p~~~d 132 (148)
T PRK06756 127 TPEDED 132 (148)
T ss_pred CCCHHH
Confidence 555444
No 236
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=27.68 E-value=1.3e+02 Score=22.28 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=20.7
Q ss_pred hcCEEEEc---CCchhhHHHHHHHHHHHHhCCCCCcEEEEe
Q 033246 11 NSDCFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLIN 48 (123)
Q Consensus 11 ~sDa~I~l---PGG~GTLdEl~evlt~~qlg~~~kPiilln 48 (123)
.++++++. ||| ++++-.+++... ..++||++..-
T Consensus 29 ~~~~vvl~InSpGG--~v~~~~~i~~~l--~~~~kPvia~v 65 (187)
T cd07020 29 GADALIIELDTPGG--LLDSTREIVQAI--LASPVPVVVYV 65 (187)
T ss_pred CCCEEEEEEECCCC--CHHHHHHHHHHH--HhCCCCEEEEE
Confidence 35776665 896 555555554322 24689998764
No 237
>PRK04531 acetylglutamate kinase; Provisional
Probab=27.61 E-value=3.8e+02 Score=22.75 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=36.2
Q ss_pred EEEEcCCch--hhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcC
Q 033246 14 CFIALPGGY--GTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAP 81 (123)
Q Consensus 14 a~I~lPGG~--GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~d 81 (123)
++|-++|.+ +-+++++.-++..+.- ..+||++.+.. .+++.+.++-=+.++..+-+.+++
T Consensus 39 ~VIKiGG~~l~~~~~~l~~dla~L~~~-G~~~VlVHGgg-------pqI~~~l~~~gie~~~v~G~RVTd 100 (398)
T PRK04531 39 AVIKVGGAVLRDDLEALASSLSFLQEV-GLTPIVVHGAG-------PQLDAELDAAGIEKETVNGLRVTS 100 (398)
T ss_pred EEEEEChHHhhcCHHHHHHHHHHHHHC-CCcEEEEECCC-------HHHHHHHHHcCCCcEEECCEecCC
Confidence 577777766 3456776666553321 24788888764 444444444346677777777776
No 238
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=27.60 E-value=18 Score=20.05 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=18.6
Q ss_pred HHHHHHHcCCCCcccccceEEcC-CHHHHHHHH
Q 033246 59 FIDKAVDDGFISPSQRSILVSAP-NAKELVQKL 90 (123)
Q Consensus 59 ~l~~~~~~gfi~~~~~~~i~~~d-d~ee~l~~l 90 (123)
.++.+.+.||-.......+..++ |++.++++|
T Consensus 5 ~v~~L~~mGf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 5 KVQQLMEMGFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 35566666877666555554444 667666654
No 239
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=27.56 E-value=2.2e+02 Score=20.85 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=24.4
Q ss_pred HHHHhcCEEEEcC--CchhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 7 EMARNSDCFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 7 ~m~~~sDa~I~lP--GG~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
-+...||++|.-. .|+|+- ++|+++. ++|++..+..
T Consensus 259 ~~~~~~d~~i~ps~~e~~~~~--~~Ea~~~------G~PvI~~~~~ 296 (353)
T cd03811 259 PYLKAADLFVLSSRYEGFPNV--LLEAMAL------GTPVVATDCP 296 (353)
T ss_pred HHHHhCCEEEeCcccCCCCcH--HHHHHHh------CCCEEEcCCC
Confidence 3567789877542 244443 6777765 9999998765
No 240
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=27.47 E-value=1.9e+02 Score=20.94 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=21.3
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+.-...|++|+.|...-..++....+.. .+.|+++++.
T Consensus 51 l~~~~vdgvi~~~~~~~~~~~~~~~l~~-----~~ip~V~~~~ 88 (267)
T cd01536 51 LIAQGVDGIIISPVDSAALTPALKKANA-----AGIPVVTVDS 88 (267)
T ss_pred HHHcCCCEEEEeCCCchhHHHHHHHHHH-----CCCcEEEecC
Confidence 3444789999988654333344444432 3456666553
No 241
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=27.34 E-value=1.7e+02 Score=23.37 Aligned_cols=57 Identities=12% Similarity=-0.004 Sum_probs=32.8
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC------------CccHHHHHHHHHHHHcC
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD------------GYYNSLLNFIDKAVDDG 67 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~------------gf~~~l~~~l~~~~~~g 67 (123)
.++....|++|+.|.....+++..+.+.- .+.|+|+++.. +++..-....+++.+.|
T Consensus 76 ~l~~~~vDGiIi~~~~~~~~~~~l~~~~~-----~~iPvV~id~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g 144 (330)
T PRK10355 76 NMINRGVDVLVIIPYNGQVLSNVIKEAKQ-----EGIKVLAYDRMINNADIDFYISFDNEKVGELQAKALVDKV 144 (330)
T ss_pred HHHHcCCCEEEEeCCChhhHHHHHHHHHH-----CCCeEEEECCCCCCCCccEEEecCHHHHHHHHHHHHHHhc
Confidence 34456899999998655555665544432 24577776531 12333444456676665
No 242
>PRK05713 hypothetical protein; Provisional
Probab=27.19 E-value=1.7e+02 Score=23.29 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=36.9
Q ss_pred CCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHH--HHHHhh
Q 033246 41 DKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELV--QKLEEY 93 (123)
Q Consensus 41 ~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l--~~l~~~ 93 (123)
.+|++++...--..|++.+++++.+.+ ......+++-+.+.+++. +.++.+
T Consensus 192 ~~~~vlIAgGtGiaP~~s~l~~~~~~~--~~~~v~l~~g~r~~~d~~~~~el~~l 244 (312)
T PRK05713 192 ERPLWLLAAGTGLAPLWGILREALRQG--HQGPIRLLHLARDSAGHYLAEPLAAL 244 (312)
T ss_pred CCcEEEEecCcChhHHHHHHHHHHhcC--CCCcEEEEEEcCchHHhhhHHHHHHH
Confidence 578998877667999999999887765 234567788888888763 344443
No 243
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=26.72 E-value=2.9e+02 Score=20.99 Aligned_cols=98 Identities=12% Similarity=0.183 Sum_probs=45.0
Q ss_pred HHHhcCEEE-EcCCchhhHHHHHHHHHHHHhCCCCCc--EEEEeCCCcc------HHHHHHHHHHHHcCCCCcccccceE
Q 033246 8 MARNSDCFI-ALPGGYGTLEELLEVITWAQLGIHDKP--VGLINVDGYY------NSLLNFIDKAVDDGFISPSQRSILV 78 (123)
Q Consensus 8 m~~~sDa~I-~lPGG~GTLdEl~evlt~~qlg~~~kP--iilln~~gf~------~~l~~~l~~~~~~gfi~~~~~~~i~ 78 (123)
..+.||.++ ++++..|-.++-.+++.+.+ ...+| ++++|.-+-- +.....++......+++ ...++
T Consensus 100 ~ak~aDvVllviDa~~~~~~~~~~i~~~l~--~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~---~~ki~ 174 (225)
T cd01882 100 IAKVADLVLLLIDASFGFEMETFEFLNILQ--VHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQ---GAKLF 174 (225)
T ss_pred HHHhcCEEEEEEecCcCCCHHHHHHHHHHH--HcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCC---CCcEE
Confidence 357788755 45555444443344444432 22455 3366653332 11222222212122332 24566
Q ss_pred EcC-------CHHHHHHHHHhhcCCCCCCcccceecccccccc
Q 033246 79 SAP-------NAKELVQKLEEYVPLHDGVVAKVKWEAEQVELN 114 (123)
Q Consensus 79 ~~d-------d~ee~l~~l~~~~~~~~~~~~~~~w~~~~~~~~ 114 (123)
+++ ...|...++...-.. ....+.| +++-||=
T Consensus 175 ~iSa~~~~~~~~~e~~~~~r~i~~~---~~~~~~~-r~~r~y~ 213 (225)
T cd01882 175 YLSGIVHGRYPKTEIHNLARFISVM---KFRPLNW-RNSHPYV 213 (225)
T ss_pred EEeeccCCCCCHHHHHHHHHHHHhC---CCCCCee-ecCCCeE
Confidence 665 666666655444322 2334567 5555553
No 244
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=26.70 E-value=44 Score=29.37 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=26.2
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHH
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN 58 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~ 58 (123)
+|+..||=||+.|+.-=+ .+-+...-|+.++-. -|+++..
T Consensus 119 ii~VaGGDGT~~eVVTGi--~Rrr~~~~pv~~~P~--G~~~l~~ 158 (535)
T KOG4435|consen 119 IIYVAGGDGTIGEVVTGI--FRRRKAQLPVGFYPG--GYDNLWL 158 (535)
T ss_pred eEEEecCCCcHHHhhHHH--HhcccccCceeeccC--ccchHhh
Confidence 455679999999987433 222244679999873 4676643
No 245
>PHA01630 putative group 1 glycosyl transferase
Probab=26.64 E-value=1.6e+02 Score=23.95 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=30.2
Q ss_pred HHHHHHHhcCEEEE--cCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCC
Q 033246 4 RKAEMARNSDCFIA--LPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG 51 (123)
Q Consensus 4 RK~~m~~~sDa~I~--lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~g 51 (123)
...-+...||+||. .-.|+|.- ++|+++. .+|+|..+..|
T Consensus 202 ~l~~~y~~aDv~v~pS~~E~fgl~--~lEAMA~------G~PVIas~~gg 243 (331)
T PHA01630 202 DIYSLFAGCDILFYPVRGGAFEIP--VIEALAL------GLDVVVTEKGA 243 (331)
T ss_pred HHHHHHHhCCEEEECCccccCChH--HHHHHHc------CCCEEEeCCCC
Confidence 44557889999986 35666655 7888864 99999998754
No 246
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=26.54 E-value=1.7e+02 Score=22.03 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=20.2
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEe
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 48 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln 48 (123)
+-...|++|+.|......+++-++ ...+.|+++++
T Consensus 54 ~~~~vdgiI~~~~~~~~~~~~~~~------~~~giPvV~~~ 88 (268)
T cd06306 54 AAWGADAILLGAVSPDGLNEILQQ------VAASIPVIALV 88 (268)
T ss_pred HHcCCCEEEEcCCChhhHHHHHHH------HHCCCCEEEec
Confidence 346789999998653322222221 12466888775
No 247
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.45 E-value=1.7e+02 Score=18.84 Aligned_cols=19 Identities=21% Similarity=0.495 Sum_probs=16.5
Q ss_pred EEEcCCchhhHHHHHHHHH
Q 033246 15 FIALPGGYGTLEELLEVIT 33 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt 33 (123)
-|.+|-..|.|.++.++++
T Consensus 5 ~v~ipD~PG~L~~ll~~l~ 23 (85)
T cd04906 5 AVTIPERPGSFKKFCELIG 23 (85)
T ss_pred EEecCCCCcHHHHHHHHhC
Confidence 4778999999999999887
No 248
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=26.41 E-value=93 Score=27.32 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=25.7
Q ss_pred EEEEcCCchhhHHHHHHHHHHHHhCC-CCCcEEEEe---CCCccHHHHHHHHHH
Q 033246 14 CFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLIN---VDGYYNSLLNFIDKA 63 (123)
Q Consensus 14 a~I~lPGG~GTLdEl~evlt~~qlg~-~~kPiilln---~~gf~~~l~~~l~~~ 63 (123)
|+|+|-||.|| ++|. .+||++=++ ..-+++-..+.+..+
T Consensus 108 avViLAGG~GT-----------RLg~~~PK~ll~I~~~~gksL~q~~~erI~~l 150 (482)
T PTZ00339 108 AVLILAGGLGT-----------RLGSDKPKGLLECTPVKKKTLFQFHCEKVRRL 150 (482)
T ss_pred EEEEECCCCcC-----------cCCCCCCCeEeeecCCCCccHHHHHHHHHHHH
Confidence 68999999999 3453 467666553 234666666666554
No 249
>PF04936 DUF658: Protein of unknown function (DUF658); InterPro: IPR007020 This entry is represented by Bacteriophage r1t, Orf18. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. These are proteins of unknown function found in Lactococcus lactis and in their associated bacteriophage.
Probab=26.40 E-value=64 Score=24.86 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=16.9
Q ss_pred chhhHHHHHH--------HHHHHHhCCCC
Q 033246 21 GYGTLEELLE--------VITWAQLGIHD 41 (123)
Q Consensus 21 G~GTLdEl~e--------vlt~~qlg~~~ 41 (123)
|.||.+|++. ++.|+.-|+.+
T Consensus 13 ~tgt~~e~~~~~~VS~~sv~~WiKNG~~~ 41 (186)
T PF04936_consen 13 ATGTIDELADYFDVSRTSVSVWIKNGKDP 41 (186)
T ss_pred ccccHHHHHHHHccCHHHHHHHHHcCCCc
Confidence 7899999975 67888888643
No 250
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.00 E-value=2.2e+02 Score=23.01 Aligned_cols=52 Identities=31% Similarity=0.325 Sum_probs=33.9
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC--Ccc-----HHHHHHHHHHHHcCCC
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD--GYY-----NSLLNFIDKAVDDGFI 69 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~--gf~-----~~l~~~l~~~~~~gfi 69 (123)
+|.+| -=||=||+--.+..+ ...++||+=+|.. ||. +.+.+.++.+.+..|.
T Consensus 65 ~Dlvi-~iGGDGT~L~aa~~~-----~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y~ 123 (287)
T PRK14077 65 SDFLI-SLGGDGTLISLCRKA-----AEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEFE 123 (287)
T ss_pred CCEEE-EECCCHHHHHHHHHh-----cCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCCe
Confidence 45544 458999987655443 3457898888874 576 5566667776655543
No 251
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=25.98 E-value=97 Score=26.41 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=27.5
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHH
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNS 55 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~ 55 (123)
.+++|++-|| +|..|+..+..+.+....++.|++-.. +..++
T Consensus 516 ~~viVf~vGG-vTy~Ei~~l~~l~~~~~~~~~iiigsT-~il~~ 557 (564)
T PF00995_consen 516 KRVIVFFVGG-VTYSEIRALRELSKKLGPGKEIIIGST-SILNP 557 (564)
T ss_dssp SEEEEEEETE-BEHHHHHHHHHHHTTSSSSSEEEEEES-SBE-H
T ss_pred CEEEEEEEcC-CcHHHHHHHHHHHHhhCCCcEEEEEeC-CccCH
Confidence 4578888888 599999988766554333356665544 45554
No 252
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=25.93 E-value=88 Score=23.29 Aligned_cols=62 Identities=10% Similarity=0.231 Sum_probs=34.2
Q ss_pred EEEcCCchhhH-HHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHH-HHHHHHcCCCCcccccceEEc-CCHHHHHHHHH
Q 033246 15 FIALPGGYGTL-EELLEVITWAQLGIHDKPVGLINVDGYYNSLLNF-IDKAVDDGFISPSQRSILVSA-PNAKELVQKLE 91 (123)
Q Consensus 15 ~I~lPGG~GTL-dEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~-l~~~~~~gfi~~~~~~~i~~~-dd~ee~l~~l~ 91 (123)
.|+|-||.||- ..+. ...+||++=++ |- +++++ ++.+.+.|+ .+.+.++ ...+++.+++.
T Consensus 3 aiIla~G~g~Rl~plt--------~~~pK~llpi~--g~--piI~~~l~~l~~~Gi-----~~I~iv~~~~~~~i~~~l~ 65 (217)
T cd04197 3 AVVLADSFNRRFRPLT--------KEKPRCLLPLA--NV--PLIDYTLEFLALNGV-----EEVFVFCCSHSDQIKEYIE 65 (217)
T ss_pred EEEEcCCCcccccccc--------cCCCceeeEEC--CE--ehHHHHHHHHHHCCC-----CeEEEEeCCCHHHHHHHHh
Confidence 37888999984 2221 12356655554 42 56665 356776653 2233333 33667777776
Q ss_pred hh
Q 033246 92 EY 93 (123)
Q Consensus 92 ~~ 93 (123)
+.
T Consensus 66 ~~ 67 (217)
T cd04197 66 KS 67 (217)
T ss_pred hc
Confidence 64
No 253
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=25.88 E-value=36 Score=27.52 Aligned_cols=10 Identities=60% Similarity=1.072 Sum_probs=7.8
Q ss_pred EEEcCCc-hhh
Q 033246 15 FIALPGG-YGT 24 (123)
Q Consensus 15 ~I~lPGG-~GT 24 (123)
+|++||| -|+
T Consensus 70 viilPGG~~g~ 80 (247)
T KOG2764|consen 70 VIILPGGLPGA 80 (247)
T ss_pred EEEecCCchhh
Confidence 6899999 553
No 254
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=25.88 E-value=2e+02 Score=21.88 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=23.3
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+.-...|++|+.|...-...+..+.+. ..+.|+|+++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~l~~l~-----~~~ipvV~~~~ 88 (288)
T cd01538 51 MIAKGVDVLVIAPVDGEALASAVEKAA-----DAGIPVIAYDR 88 (288)
T ss_pred HHHcCCCEEEEecCChhhHHHHHHHHH-----HCCCCEEEECC
Confidence 344578999999854333345444432 24678888875
No 255
>PRK00208 thiG thiazole synthase; Reviewed
Probab=25.62 E-value=86 Score=25.38 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=19.8
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHH
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITW 34 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~ 34 (123)
+.+.+..+.-|+.-||+||.++..+++.+
T Consensus 168 ~~i~e~~~vpVIveaGI~tpeda~~Amel 196 (250)
T PRK00208 168 RIIIEQADVPVIVDAGIGTPSDAAQAMEL 196 (250)
T ss_pred HHHHHhcCCeEEEeCCCCCHHHHHHHHHc
Confidence 34455566777777788888777777753
No 256
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=25.57 E-value=2.5e+02 Score=20.87 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=21.6
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
...|++|+.|.-.-.+.+..+.+. ..+.|+|+++.
T Consensus 57 ~~vdgiii~~~~~~~~~~~i~~~~-----~~~ipvV~~~~ 91 (275)
T cd06307 57 ARSDGVALVAPDHPQVRAAVARLA-----AAGVPVVTLVS 91 (275)
T ss_pred hcCCEEEEeCCCcHHHHHHHHHHH-----HCCCcEEEEeC
Confidence 378999998854333345544443 24668887764
No 257
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=25.43 E-value=52 Score=25.78 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=16.9
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEE
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVG 45 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPii 45 (123)
...|+ |++|||.|+.+.-..+......-..++|+.
T Consensus 54 ~~~dg-ivl~GG~~~~~~~~~~~~i~~~~~~~~Pvl 88 (235)
T cd01746 54 KGADG-ILVPGGFGIRGVEGKILAIKYARENNIPFL 88 (235)
T ss_pred ccCCE-EEECCCCCCcchhhHHHHHHHHHHCCceEE
Confidence 34566 556667666543222222222223578865
No 258
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=25.40 E-value=3e+02 Score=20.83 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=41.4
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCH-HHHH
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNA-KELV 87 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~-ee~l 87 (123)
....+++|+..||+-.-+|-...+.- .-.+|.++.+ ++.+++ ++. .+....+.-..++ +++-
T Consensus 69 ~~~~~~ViaTGGG~v~~~enr~~l~~------~g~vv~L~~~--~e~l~~---Rl~------~~~~RPll~~~~~~~~l~ 131 (172)
T COG0703 69 LEEDNAVIATGGGAVLSEENRNLLKK------RGIVVYLDAP--FETLYE---RLQ------RDRKRPLLQTEDPREELE 131 (172)
T ss_pred hhcCCeEEECCCccccCHHHHHHHHh------CCeEEEEeCC--HHHHHH---Hhc------cccCCCcccCCChHHHHH
Confidence 34447999999999999999888842 3378888765 444433 322 2333444456666 4444
Q ss_pred HHHHh
Q 033246 88 QKLEE 92 (123)
Q Consensus 88 ~~l~~ 92 (123)
+.++.
T Consensus 132 ~L~~~ 136 (172)
T COG0703 132 ELLEE 136 (172)
T ss_pred HHHHH
Confidence 44433
No 259
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=25.40 E-value=2e+02 Score=22.00 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=25.4
Q ss_pred HHHHHHhcCEEEEcC---CchhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 5 KAEMARNSDCFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 5 K~~m~~~sDa~I~lP---GG~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
.......||+++.-+ .|+|. =++|+++. .+|+|..+..
T Consensus 261 ~~~~~~~ad~~v~ps~~~e~~~~--~~~EAma~------G~PvI~s~~~ 301 (363)
T cd04955 261 LLELLRYAALFYLHGHSVGGTNP--SLLEAMAY------GCPVLASDNP 301 (363)
T ss_pred HHHHHHhCCEEEeCCccCCCCCh--HHHHHHHc------CCCEEEecCC
Confidence 345667788776533 34444 37888864 9999998764
No 260
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=25.30 E-value=88 Score=24.48 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=22.9
Q ss_pred cCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 12 SDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
.| +|+.-||=||+.|+...+.- . ....|+.+++.
T Consensus 58 ~d-~ivv~GGDGTl~~v~~~l~~--~-~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VD-TVIAGGGDGTINEVVNALIQ--L-DDIPALGILPL 91 (293)
T ss_pred CC-EEEEECCCChHHHHHHHHhc--C-CCCCcEEEEcC
Confidence 35 55668999999999987731 1 11247877765
No 261
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=25.11 E-value=70 Score=24.57 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=9.7
Q ss_pred EEEcCCchhhHHH
Q 033246 15 FIALPGGYGTLEE 27 (123)
Q Consensus 15 ~I~lPGG~GTLdE 27 (123)
.|++|||.+.-++
T Consensus 44 ~lvipGG~~~~d~ 56 (219)
T PRK03619 44 AVVLPGGFSYGDY 56 (219)
T ss_pred EEEECCCCchhhh
Confidence 7889999876543
No 262
>PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This N-terminal domain is associated with N-terminal region of aminopeptidase P (X-Pro aminopeptidase I and II, 3.4.11.9 from EC) and related sequences. It is not found associated with methionyl aminopeptidase 1 (IPR002467 from INTERPRO) or methionyl aminopeptidase 2 (IPR002468 from INTERPRO) families. The domain is structurally very similar [] to the creatinase N-terminal domain (IPR000587 from INTERPRO), however, little or no sequence similarity exists between the two domains. The sequences belong to MEROPS peptidase family M24B, clan MG.; GO: 0004177 aminopeptidase activity, 0030145 manganese ion binding; PDB: 3IG4_B 2OKN_A 2IW2_B 1WBQ_A 2BH3_A 1WLR_A 2V3Z_A 1W2M_B 2BWT_A 2BWW_A ....
Probab=25.08 E-value=49 Score=23.50 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=13.4
Q ss_pred hHHHHHHHhc-CEEEEcCCchhh
Q 033246 3 QRKAEMARNS-DCFIALPGGYGT 24 (123)
Q Consensus 3 eRK~~m~~~s-Da~I~lPGG~GT 24 (123)
-|++++..+- +++|++|||--.
T Consensus 9 RR~~l~~~l~~~~~vil~~~~~~ 31 (134)
T PF05195_consen 9 RRKKLAEKLPDNSIVILPGGPEK 31 (134)
T ss_dssp HHHHHHHHSHSSEEEEEE----E
T ss_pred HHHHHHHhcCCCcEEEEECCCee
Confidence 3677777776 888999988544
No 263
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=25.05 E-value=1.4e+02 Score=20.71 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=26.4
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCC
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDG 51 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~g 51 (123)
...+.+.||++|..+..-|.-.=++|+++. .+|++..+..+
T Consensus 175 ~~~~~~~~di~l~~~~~e~~~~~~~Eam~~------g~pvi~s~~~~ 215 (229)
T cd01635 175 LALLLAAADVFVLPSLREGFGLVVLEAMAC------GLPVIATDVGG 215 (229)
T ss_pred HHHHhhcCCEEEecccccCcChHHHHHHhC------CCCEEEcCCCC
Confidence 345666799988766532333336666653 89999887653
No 264
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=25.02 E-value=1.5e+02 Score=21.76 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=21.7
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+.-...|++|+.|...-. +. +.++...+.|+|+++.
T Consensus 51 l~~~~~dgiii~~~~~~~--~~-----l~~~~~~~ipvV~~~~ 86 (267)
T cd06283 51 LLAYQVDGLIVNPTGNNK--EL-----YQRLAKNGKPVVLVDR 86 (267)
T ss_pred HHHcCcCEEEEeCCCCCh--HH-----HHHHhcCCCCEEEEcC
Confidence 344568999999875422 22 2222334678888875
No 265
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=24.99 E-value=62 Score=26.16 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=29.4
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
.+++.+.++.=|+.=+|+||..+..+++.+ .---+|+|+
T Consensus 167 l~~i~~~~~vPvIvDAGiG~pSdaa~AMEl------G~daVLvNT 205 (247)
T PF05690_consen 167 LRIIIERADVPVIVDAGIGTPSDAAQAMEL------GADAVLVNT 205 (247)
T ss_dssp HHHHHHHGSSSBEEES---SHHHHHHHHHT------T-SEEEESH
T ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHHc------CCceeehhh
Confidence 457788889999999999999999999976 556788885
No 266
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=24.90 E-value=34 Score=22.58 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=16.2
Q ss_pred EcCCchhhHHHHHHHHHHHHh
Q 033246 17 ALPGGYGTLEELLEVITWAQL 37 (123)
Q Consensus 17 ~lPGG~GTLdEl~evlt~~ql 37 (123)
-=|+|. |++||.++..|.+.
T Consensus 20 ~rp~GA-Ti~ei~~atGWq~H 39 (72)
T PF11994_consen 20 RRPEGA-TIAEICEATGWQPH 39 (72)
T ss_pred cCCCCC-CHHHHHHhhCCchh
Confidence 347777 99999999988665
No 267
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.88 E-value=62 Score=24.85 Aligned_cols=19 Identities=42% Similarity=0.861 Sum_probs=12.7
Q ss_pred HhcCEEEEcCCchhhHHHHHH
Q 033246 10 RNSDCFIALPGGYGTLEELLE 30 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~e 30 (123)
+.+|++| +||+ |+..+-.+
T Consensus 36 ~~~d~iI-lPG~-g~~~~~~~ 54 (210)
T PRK14004 36 ENSKALI-LPGD-GHFDKAME 54 (210)
T ss_pred ccCCEEE-ECCC-CchHHHHH
Confidence 5778755 9999 66555443
No 268
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.81 E-value=1.8e+02 Score=23.62 Aligned_cols=49 Identities=24% Similarity=0.399 Sum_probs=31.1
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC--CccHH-----HHHHHHHHHHcCC
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD--GYYNS-----LLNFIDKAVDDGF 68 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~--gf~~~-----l~~~l~~~~~~gf 68 (123)
+|+.=||=||+-+.+..+. ..++||+=+|.. ||... +.+.++.+.+..|
T Consensus 65 ~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 65 LVIVVGGDGSLLGAARALA-----RHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGHY 120 (295)
T ss_pred EEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCCc
Confidence 5666799999998875542 357898888873 45432 4444555554443
No 269
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=24.81 E-value=4.6e+02 Score=22.72 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=44.9
Q ss_pred hHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHH--HHHHcCCCCcccccceEEc
Q 033246 3 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFID--KAVDDGFISPSQRSILVSA 80 (123)
Q Consensus 3 eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~--~~~~~gfi~~~~~~~i~~~ 80 (123)
.|-..++.-|+..|.+ ||++|.=||. + .+||.+++-...--+ .++++ ++.+-|.++--.-+.+.
T Consensus 286 ~~~~~ll~gA~~vVSm-~GYNTvCeIL---s------~~k~aLivPr~~p~e--EQliRA~Rl~~LGL~dvL~pe~lt-- 351 (400)
T COG4671 286 NDFESLLAGARLVVSM-GGYNTVCEIL---S------FGKPALIVPRAAPRE--EQLIRAQRLEELGLVDVLLPENLT-- 351 (400)
T ss_pred hhHHHHHHhhheeeec-ccchhhhHHH---h------CCCceEEeccCCCcH--HHHHHHHHHHhcCcceeeCcccCC--
Confidence 3445566677777766 7899987765 3 389999986532122 33333 57777766554444443
Q ss_pred CCHHHHHHHHHhh
Q 033246 81 PNAKELVQKLEEY 93 (123)
Q Consensus 81 dd~ee~l~~l~~~ 93 (123)
++-+.+.|+..
T Consensus 352 --~~~La~al~~~ 362 (400)
T COG4671 352 --PQNLADALKAA 362 (400)
T ss_pred --hHHHHHHHHhc
Confidence 55555555543
No 270
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=24.61 E-value=1.4e+02 Score=24.34 Aligned_cols=72 Identities=24% Similarity=0.241 Sum_probs=41.0
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHH
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 86 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~ 86 (123)
.+.+..|++++=| |+|.-+|..+.+...-.... +|+|+-- ++ ++. +........ ...+.++..+.|.
T Consensus 97 ~~~~~~~avviGp-GlG~~~~~~~~~~~~l~~~~-~p~ViDA-Da-----L~~---la~~~~~~~--~~~~VlTPH~gEf 163 (284)
T COG0063 97 ELVERADAVVIGP-GLGRDAEGQEALKELLSSDL-KPLVLDA-DA-----LNL---LAELPDLLD--ERKVVLTPHPGEF 163 (284)
T ss_pred hhhccCCEEEECC-CCCCCHHHHHHHHHHHhccC-CCEEEeC-cH-----HHH---HHhCccccc--CCcEEECCCHHHH
Confidence 4567889988766 57877776666654333333 8988764 33 222 121111211 1127778888877
Q ss_pred HHHHH
Q 033246 87 VQKLE 91 (123)
Q Consensus 87 l~~l~ 91 (123)
...+.
T Consensus 164 ~rL~g 168 (284)
T COG0063 164 ARLLG 168 (284)
T ss_pred HHhcC
Confidence 76654
No 271
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=24.33 E-value=1e+02 Score=25.14 Aligned_cols=51 Identities=27% Similarity=0.284 Sum_probs=36.2
Q ss_pred hcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC-----CCccHHHHHHHHHH
Q 033246 11 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV-----DGYYNSLLNFIDKA 63 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~-----~gf~~~l~~~l~~~ 63 (123)
..|+|||.= |.-||+|....+++. +.-.+||||+.+. .--.|...+++..+
T Consensus 77 ~~dG~VVtH-GTDTmeeTA~~Ls~~-l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av 132 (323)
T smart00870 77 GYDGVVVTH-GTDTLEETAYFLSLT-LDSLDKPVVLTGAMRPATALSSDGPANLLDAV 132 (323)
T ss_pred CCCEEEEec-CCccHHHHHHHHHHH-hhcCCCCEEEECCCCCCCCCCchhHHHHHHHH
Confidence 458898885 689999999998863 3333899999975 22455666665543
No 272
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=24.31 E-value=1.2e+02 Score=19.57 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=25.7
Q ss_pred ceEEcCCHHHHHHHHHhhcCCCCCCcccceecccccccccccc
Q 033246 76 ILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQVELNTSLK 118 (123)
Q Consensus 76 ~i~~~dd~ee~l~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 118 (123)
.+.|.++|+++++.|......+ ..+.+--+..+.+-.--||+
T Consensus 19 PLv~Y~~Pe~Vi~iIN~lR~ke-GvYG~c~~~e~~~~i~isLr 60 (63)
T PF03295_consen 19 PLVFYEDPEEVINIINELRNKE-GVYGSCYYKENDQSIRISLR 60 (63)
T ss_pred eeeeccCHHHHHHHHHHhhhcc-CceeEEEEecCCcEEEEEee
Confidence 4678999999999997765433 35555444444433333443
No 273
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.26 E-value=1.2e+02 Score=22.45 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=20.9
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+.....|++|+.|.- -++.+ .++...+.|+|+++.
T Consensus 54 l~~~~vdgiii~~~~---~~~~~-----~~l~~~~ipvV~~~~ 88 (268)
T cd06277 54 LEDGKVDGIILLGGI---STEYI-----KEIKELGIPFVLVDH 88 (268)
T ss_pred HHHCCCCEEEEeCCC---ChHHH-----HHHhhcCCCEEEEcc
Confidence 345679999998832 13332 223334678888775
No 274
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=24.13 E-value=1.7e+02 Score=21.42 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=34.5
Q ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHhhcCCCCCCcccceeccccc
Q 033246 40 HDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQV 111 (123)
Q Consensus 40 ~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l~~l~~~~~~~~~~~~~~~w~~~~~ 111 (123)
..+++.++..++||.+... . ....|..+.. . +-|.+.+.+.|...........+.++|..+..
T Consensus 26 ~~~~~~~i~~Ddf~~~~~~--~-~~~~g~~d~~-----~-~~d~~~l~~~l~~l~~~~~~~~p~yd~~~~~~ 88 (179)
T cd02028 26 NGIGPVVISLDDYYVPRKT--P-RDEDGNYDFE-----S-ILDLDLLNKNLHDLLNGKEVELPIYDFRTGKR 88 (179)
T ss_pred cCCCEEEEehhhcccCccc--c-cccCCCCCCC-----c-cccHHHHHHHHHHHHCCCeeecccceeECCcc
Confidence 4568889999999986611 1 1112222111 1 13566666766665544444566677775543
No 275
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.00 E-value=1.9e+02 Score=21.23 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=21.2
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
.....||+|+.|..--+. +....+ ...+.|+|+++.
T Consensus 52 ~~~~vdgiii~~~~~~~~-~~~~~~-----~~~~ipvV~~~~ 87 (268)
T cd06289 52 LEHGVAGIILCPAAGTSP-DLLKRL-----AESGIPVVLVAR 87 (268)
T ss_pred HHcCCCEEEEeCCCCccH-HHHHHH-----HhcCCCEEEEec
Confidence 344689999998632222 233322 234678888874
No 276
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=23.90 E-value=3.7e+02 Score=21.27 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=50.6
Q ss_pred EEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHH--HHHHHcC-----CCCcc----cccceEEcCC
Q 033246 14 CFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFI--DKAVDDG-----FISPS----QRSILVSAPN 82 (123)
Q Consensus 14 a~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l--~~~~~~g-----fi~~~----~~~~i~~~dd 82 (123)
..-+..|++|+-+++.+.+.- ++.=.+++-++-|..-+..- +.+.+.| |.++. ..+.++.++|
T Consensus 43 ~~~v~~G~l~~~~~l~~~l~~------~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s 116 (248)
T PRK08057 43 PGPVRVGGFGGAEGLAAYLRE------EGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDD 116 (248)
T ss_pred CceEEECCCCCHHHHHHHHHH------CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECC
Confidence 445678999999999988853 44556777777777655542 2344444 33333 3457899999
Q ss_pred HHHHHHHHHhh
Q 033246 83 AKELVQKLEEY 93 (123)
Q Consensus 83 ~ee~l~~l~~~ 93 (123)
.+++.+.+.+.
T Consensus 117 ~~~a~~~l~~~ 127 (248)
T PRK08057 117 IEEAAEALAPF 127 (248)
T ss_pred HHHHHHHhhcc
Confidence 99999999654
No 277
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=23.84 E-value=4.1e+02 Score=21.87 Aligned_cols=71 Identities=24% Similarity=0.345 Sum_probs=40.6
Q ss_pred HHHHHHhcCEEEEcC--Cc----hhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceE
Q 033246 5 KAEMARNSDCFIALP--GG----YGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILV 78 (123)
Q Consensus 5 K~~m~~~sDa~I~lP--GG----~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~ 78 (123)
...+...||+||.-- +. -|.-.=++|+++. .+|||..+..|. . + ++. ......++
T Consensus 292 l~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~------G~PVI~t~~~g~-~---E----~v~-----~~~~G~lv 352 (406)
T PRK15427 292 VKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAV------GIPVVSTLHSGI-P---E----LVE-----ADKSGWLV 352 (406)
T ss_pred HHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhC------CCCEEEeCCCCc-h---h----hhc-----CCCceEEe
Confidence 345778899988531 11 2233446777764 899999887542 2 1 221 12223333
Q ss_pred EcCCHHHHHHHHHhhc
Q 033246 79 SAPNAKELVQKLEEYV 94 (123)
Q Consensus 79 ~~dd~ee~l~~l~~~~ 94 (123)
=.+|++++.+.|....
T Consensus 353 ~~~d~~~la~ai~~l~ 368 (406)
T PRK15427 353 PENDAQALAQRLAAFS 368 (406)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3467888877777653
No 278
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=23.56 E-value=71 Score=22.58 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=13.8
Q ss_pred EEEcCCchhhHHHHHHHHHH
Q 033246 15 FIALPGGYGTLEELLEVITW 34 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~ 34 (123)
.++||| |+..+.+..+.-
T Consensus 47 ~lVlPG--Ga~~~~~~~L~~ 64 (114)
T cd03144 47 LLVVPG--GADLPYCRALNG 64 (114)
T ss_pred EEEECC--CChHHHHHHHHh
Confidence 678999 888888877643
No 279
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=23.55 E-value=91 Score=24.48 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=30.2
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHH
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLN 58 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~ 58 (123)
.+.+.++.-|+.-||+|+++.+..+-.+.+.| .--++++.. +|+.-++
T Consensus 187 ~l~~~~~~pviasGGv~s~eDl~~l~~l~~~G---v~gvivg~A-l~~g~i~ 234 (243)
T TIGR01919 187 VVAARTDAIVAASGGSSLLDDLRAIKYLDEGG---VSVAIGGKL-LYARFFT 234 (243)
T ss_pred HHHhhCCCCEEEECCcCCHHHHHHHHhhccCC---eeEEEEhHH-HHcCCCC
Confidence 44556788899999999999998775443322 223444443 5554433
No 280
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=23.49 E-value=75 Score=26.01 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=26.1
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHH
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITW 34 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~ 34 (123)
.+++.+.++.-|+.-+|+||-+...+++.+
T Consensus 181 l~~i~e~~~vpVivdAGIgt~sDa~~AmEl 210 (267)
T CHL00162 181 LQIIIENAKIPVIIDAGIGTPSEASQAMEL 210 (267)
T ss_pred HHHHHHcCCCcEEEeCCcCCHHHHHHHHHc
Confidence 467888899999999999999999988865
No 281
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.47 E-value=2.1e+02 Score=18.28 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=21.1
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCC
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGI 39 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~ 39 (123)
++.+|-..|+|-++..++....++.
T Consensus 4 ~~~l~~~~g~L~~iL~~f~~~~inl 28 (74)
T cd04929 4 IFSLKNEVGGLAKALKLFQELGINV 28 (74)
T ss_pred EEEcCCCCcHHHHHHHHHHHCCCCE
Confidence 5667889999999999999887773
No 282
>PRK05380 pyrG CTP synthetase; Validated
Probab=23.33 E-value=47 Score=29.61 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=18.8
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEE
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVG 45 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPii 45 (123)
++..|+ |++|||+|....--++.........++|+.
T Consensus 341 L~~~DG-IIlpGGfG~~~~~g~i~~i~~a~e~~iPiL 376 (533)
T PRK05380 341 LKGVDG-ILVPGGFGERGIEGKILAIRYARENNIPFL 376 (533)
T ss_pred hhcCCE-EEecCCCCccccccHHHHHHHHHHCCCcEE
Confidence 455676 567889986432122222222223578876
No 283
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=23.32 E-value=3.1e+02 Score=20.22 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=30.5
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC-----------CccHHHHHHHHHHHHcC
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD-----------GYYNSLLNFIDKAVDDG 67 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~-----------gf~~~l~~~l~~~~~~g 67 (123)
.++-...|++|+.|-.... .. ..++...+.|+|++|.. +++.......+++.+.|
T Consensus 50 ~~~~~~vdgii~~~~~~~~-~~------~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g 115 (268)
T cd06270 50 FLLERRCDALILHSKALSD-DE------LIELAAQVPPLVLINRHIPGLADRCIWLDNEQGGYLATEHLIELG 115 (268)
T ss_pred HHHHcCCCEEEEecCCCCH-HH------HHHHhhCCCCEEEEeccCCCCCCCeEEECcHHHHHHHHHHHHHCC
Confidence 3456689999999753221 11 22222346788888752 13344444456666655
No 284
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=23.18 E-value=91 Score=23.31 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=8.5
Q ss_pred EEEcCCchhhH
Q 033246 15 FIALPGGYGTL 25 (123)
Q Consensus 15 ~I~lPGG~GTL 25 (123)
.|++|||.++.
T Consensus 39 ~liipGG~~~~ 49 (184)
T TIGR03800 39 GLIIPGGESTT 49 (184)
T ss_pred EEEECCCCHHH
Confidence 56788998875
No 285
>cd05142 Barstar Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=23.16 E-value=94 Score=20.74 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=28.9
Q ss_pred chHHHHHHHhcCEEEEcCCchh-hHHHHHHHHHHHHhCCCCCcEEEEe
Q 033246 2 HQRKAEMARNSDCFIALPGGYG-TLEELLEVITWAQLGIHDKPVGLIN 48 (123)
Q Consensus 2 ~eRK~~m~~~sDa~I~lPGG~G-TLdEl~evlt~~qlg~~~kPiilln 48 (123)
.++.......|.++ -+|+.+| .||=+.+.++ |....|+.+.-
T Consensus 10 ~~~~~f~~~l~~~~-~~p~~~G~NlDAl~D~Lt----g~~~~p~~I~~ 52 (87)
T cd05142 10 RSIEDLHQILKKEL-ALPEYYGENLDALWDCLT----GWVELPLTIEW 52 (87)
T ss_pred CCHHHHHHHHHHHh-CCchhcCCCHHHHHHHHc----CCCCCCeEEEE
Confidence 34556666677764 8899988 8998888886 33456765553
No 286
>PRK09701 D-allose transporter subunit; Provisional
Probab=23.16 E-value=2.4e+02 Score=22.01 Aligned_cols=38 Identities=8% Similarity=-0.181 Sum_probs=22.6
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+..+..|++|+.|.-....++....+ ...+.|+++++.
T Consensus 78 l~~~~vDgiIi~~~~~~~~~~~l~~~-----~~~giPvV~~~~ 115 (311)
T PRK09701 78 LSNKNYKGIAFAPLSSVNLVMPVARA-----WKKGIYLVNLDE 115 (311)
T ss_pred HHHcCCCEEEEeCCChHHHHHHHHHH-----HHCCCcEEEeCC
Confidence 33456899999987644443332221 124678888874
No 287
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=23.15 E-value=1.6e+02 Score=21.71 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=21.9
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
++-...|++|+.|.- .. ++. +.++...+.|+|++|.
T Consensus 51 l~~~~vdgiIi~~~~-~~-~~~-----~~~l~~~~ipvV~~~~ 86 (265)
T cd06299 51 LLSQRVDGIIVVPHE-QS-AEQ-----LEDLLKRGIPVVFVDR 86 (265)
T ss_pred HHhcCCCEEEEcCCC-CC-hHH-----HHHHHhCCCCEEEEec
Confidence 444568999999853 22 222 2333345678888875
No 288
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=23.07 E-value=2e+02 Score=21.15 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=21.3
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
.....||+|+.|+-.-+ .+..+.+. ..+.|+++++.
T Consensus 53 ~~~~vdgiii~~~~~~~-~~~~~~~~-----~~~ipvv~i~~ 88 (270)
T cd01545 53 QRSRVDGVILTPPLSDN-PELLDLLD-----EAGVPYVRIAP 88 (270)
T ss_pred HHCCCCEEEEeCCCCCc-cHHHHHHH-----hcCCCEEEEec
Confidence 34568999999874212 34444432 23567777764
No 289
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.04 E-value=3.6e+02 Score=20.87 Aligned_cols=39 Identities=31% Similarity=0.589 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCCccHH-----HHHHHHHHHHcC
Q 033246 25 LEELLEVITWAQLGIHDKPVGLINVDGYYNS-----LLNFIDKAVDDG 67 (123)
Q Consensus 25 LdEl~evlt~~qlg~~~kPiilln~~gf~~~-----l~~~l~~~~~~g 67 (123)
++..++.+...+- ..+.|++++. ||++ +..+++.+.+.|
T Consensus 61 ~~~~~~~~~~vr~-~~~~pv~lm~---y~n~~~~~G~~~fi~~~~~aG 104 (242)
T cd04724 61 LKDVLELVKEIRK-KNTIPIVLMG---YYNPILQYGLERFLRDAKEAG 104 (242)
T ss_pred HHHHHHHHHHHhh-cCCCCEEEEE---ecCHHHHhCHHHHHHHHHHCC
Confidence 3344544433221 2378988763 6666 566677777766
No 290
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=22.98 E-value=1.2e+02 Score=23.32 Aligned_cols=15 Identities=27% Similarity=0.729 Sum_probs=9.5
Q ss_pred HhcCEEEEcCCchhhHH
Q 033246 10 RNSDCFIALPGGYGTLE 26 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLd 26 (123)
..+|++| +||+ |+.+
T Consensus 38 ~~~d~iI-lPG~-g~~~ 52 (210)
T CHL00188 38 AQVHALV-LPGV-GSFD 52 (210)
T ss_pred hhCCEEE-ECCC-CchH
Confidence 4588866 7883 4444
No 291
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=22.94 E-value=1.8e+02 Score=26.42 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=28.1
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHHh--CCCCCcEEEEeCCCcc
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQL--GIHDKPVGLINVDGYY 53 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~ql--g~~~kPiilln~~gf~ 53 (123)
+..-+.|+||||- |.-.+++.+.-... +..=+.|.+++.+.||
T Consensus 57 ~~~~~~laLsGGs-TP~~~Y~~L~~~~~~~~l~w~~V~~F~~DEr~ 101 (652)
T PRK02122 57 EGKPCVLGLATGS-SPIGVYAELIRMHREEGLSFKNVITFNLDEYY 101 (652)
T ss_pred hCCCEEEEEcCCc-CHHHHHHHHHhhhhccCCCchheEEEeCeecc
Confidence 4457899999993 44445554443211 2334789999999899
No 292
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=22.70 E-value=2.8e+02 Score=24.20 Aligned_cols=67 Identities=21% Similarity=0.169 Sum_probs=47.3
Q ss_pred HHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCc
Q 033246 4 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISP 71 (123)
Q Consensus 4 RK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~ 71 (123)
||-+=...++++++-|==+|||.|.+++..+.+-.- -+||+-.....==|..++-|.-....|+|..
T Consensus 320 ~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~g-y~~viSHRSGETeD~tIAdLAVa~~agqIKT 386 (423)
T COG0148 320 KKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAG-YTAVISHRSGETEDTTIADLAVATNAGQIKT 386 (423)
T ss_pred HHHHHhccCceEEEechhcccHHHHHHHHHHHHHCC-CeEEEecCCCCcccchHHHHHHHhCCCeeec
Confidence 455556678999999999999999999998766532 3677766553345556666655556666643
No 293
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=22.63 E-value=1.1e+02 Score=22.11 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=19.2
Q ss_pred EEEcCCchhhHHH--HHHHHHHHH-hCCCCCcEEEEeC
Q 033246 15 FIALPGGYGTLEE--LLEVITWAQ-LGIHDKPVGLINV 49 (123)
Q Consensus 15 ~I~lPGG~GTLdE--l~evlt~~q-lg~~~kPiilln~ 49 (123)
.|++|||.|+..- --++..|.+ ...+.|||+-+..
T Consensus 79 ~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~ 116 (180)
T cd03169 79 ALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICH 116 (180)
T ss_pred EEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECc
Confidence 4677888775320 012223322 2357889988865
No 294
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=22.57 E-value=1.5e+02 Score=24.00 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=35.2
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC-----------CccHHHHHHHHHHHHcC
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD-----------GYYNSLLNFIDKAVDDG 67 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~-----------gf~~~l~~~l~~~~~~g 67 (123)
..+.....|++|++| ...-+...+.+.- ...|+|+++.. +.+.......+++++.|
T Consensus 108 ~~l~~~~vdGiIi~~--~~~~~~~~~~l~~-----~~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G 174 (333)
T COG1609 108 ETLLQKRVDGLILLG--ERPNDSLLELLAA-----AGIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELG 174 (333)
T ss_pred HHHHHcCCCEEEEec--CCCCHHHHHHHHh-----cCCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHCC
Confidence 345566799999999 5555555554432 26788877752 13444555567777766
No 295
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=22.52 E-value=3.9e+02 Score=21.70 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=37.8
Q ss_pred hHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCC
Q 033246 3 QRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPN 82 (123)
Q Consensus 3 eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd 82 (123)
.||.++.- |--|-.|++||-..+. + =+..+..+|+.+.+.|.+.++ .+....++-
T Consensus 14 kRk~lLll-------L~egPkti~EI~~~l~---------------v--s~~ai~pqiKkL~~~~LV~~~-~~~Y~LS~~ 68 (260)
T COG4742 14 KRKDLLLL-------LKEGPKTIEEIKNELN---------------V--SSSAILPQIKKLKDKGLVVQE-GDRYSLSSL 68 (260)
T ss_pred HHHHHHHH-------HHhCCCCHHHHHHHhC---------------C--CcHHHHHHHHHHhhCCCEEec-CCEEEecch
Confidence 36666554 4458999999998873 2 256778888888888888666 334443433
Q ss_pred H
Q 033246 83 A 83 (123)
Q Consensus 83 ~ 83 (123)
-
T Consensus 69 G 69 (260)
T COG4742 69 G 69 (260)
T ss_pred H
Confidence 3
No 296
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=22.48 E-value=1e+02 Score=22.46 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=20.2
Q ss_pred HhcCEEEEcCCchhhHHH--HHHHHHHHHhCCCCCcEEEEe
Q 033246 10 RNSDCFIALPGGYGTLEE--LLEVITWAQLGIHDKPVGLIN 48 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdE--l~evlt~~qlg~~~kPiilln 48 (123)
..-|++|++||+-...++ ...+... + ..++|+.=+-
T Consensus 41 ~~~dgvil~gG~~~~~~~~~~~~i~~~--~-~~~~PvlGIC 78 (184)
T cd01743 41 LNPDAIVISPGPGHPEDAGISLEIIRA--L-AGKVPILGVC 78 (184)
T ss_pred cCCCEEEECCCCCCcccchhHHHHHHH--H-hcCCCEEEEC
Confidence 568898888888665443 2222222 2 2358876443
No 297
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=22.47 E-value=1.7e+02 Score=22.60 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=30.9
Q ss_pred HHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC-----------CccHHHHHHHHHHHHcC
Q 033246 8 MARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD-----------GYYNSLLNFIDKAVDDG 67 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~-----------gf~~~l~~~l~~~~~~g 67 (123)
.....|++|++|.... -++..+.+ ...+.|+|++|.. +.+..-....+++.+.|
T Consensus 113 ~~~~vdgiIi~~~~~~-~~~~~~~l-----~~~~iPvV~~~~~~~~~~~~~V~~dn~~~~~~~~~~L~~~G 177 (327)
T TIGR02417 113 LARQVDALIVASCMPP-EDAYYQKL-----QNEGLPVVALDRSLDDEHFCSVISDDVDAAAELIERLLSQH 177 (327)
T ss_pred HHcCCCEEEEeCCCCC-ChHHHHHH-----HhcCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCC
Confidence 3456899999986532 23443332 2236788888752 12333444456777766
No 298
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=22.37 E-value=92 Score=23.24 Aligned_cols=13 Identities=38% Similarity=0.692 Sum_probs=9.1
Q ss_pred cCEEEEcCCchhhH
Q 033246 12 SDCFIALPGGYGTL 25 (123)
Q Consensus 12 sDa~I~lPGG~GTL 25 (123)
.| .|++|||.++.
T Consensus 44 ~d-~iii~GG~~~~ 56 (200)
T PRK13527 44 CD-ALIIPGGESTT 56 (200)
T ss_pred CC-EEEECCCcHHH
Confidence 45 47788888874
No 299
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=22.35 E-value=88 Score=22.34 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=18.9
Q ss_pred EEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 14 CFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 14 a~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
+.|+|-||.|| +.|..+|+..-++..
T Consensus 2 ~~iILAgG~s~-----------Rmg~~~K~l~~i~g~ 27 (186)
T TIGR02665 2 SGVILAGGRAR-----------RMGGRDKGLVELGGK 27 (186)
T ss_pred eEEEEcCCccc-----------cCCCCCCceeEECCE
Confidence 46889999998 344347888887753
No 300
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=22.33 E-value=2.1e+02 Score=21.92 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=21.1
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEe
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLIN 48 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln 48 (123)
++-...|++|+.|...-...+..+.+ .++.|+|+++
T Consensus 53 l~~~~vDgiIi~~~~~~~~~~~l~~~------~~~iPvV~~~ 88 (295)
T TIGR02955 53 CKSWGADAILLGTVSPEALNHDLAQL------TKSIPVFALV 88 (295)
T ss_pred HHHcCCCEEEEecCChhhhhHHHHHH------hcCCCEEEEe
Confidence 34567899999885433323433322 1367888774
No 301
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=22.29 E-value=1.1e+02 Score=22.31 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=21.2
Q ss_pred cCEEEEcCCchhhHHHHH---HHHHHHHhC-CCCCcEEEEeCC
Q 033246 12 SDCFIALPGGYGTLEELL---EVITWAQLG-IHDKPVGLINVD 50 (123)
Q Consensus 12 sDa~I~lPGG~GTLdEl~---evlt~~qlg-~~~kPiilln~~ 50 (123)
.|+ |++|||.+....+. .+..|.+-- ...|||+-+...
T Consensus 67 ~D~-l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G 108 (196)
T PRK11574 67 FDV-IVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAA 108 (196)
T ss_pred CCE-EEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHh
Confidence 354 56789976544322 234443322 457888877654
No 302
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=22.28 E-value=90 Score=21.55 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=31.8
Q ss_pred EEEcCCchhhHHHH---HHHHHHHHh-CCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHH
Q 033246 15 FIALPGGYGTLEEL---LEVITWAQL-GIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 86 (123)
Q Consensus 15 ~I~lPGG~GTLdEl---~evlt~~ql-g~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~ 86 (123)
.|++|||.+...-+ -.+..|.+- ..+.|||+-+...- . -+.+.|.+.. + .-++..+++.++
T Consensus 65 ~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~------~---~La~aGll~~-~-~gv~~~~~~~~~ 129 (142)
T cd03132 65 AVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGS------D---LLEAAGIPLE-D-PGVVTADDVKDV 129 (142)
T ss_pred EEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchH------H---HHHHcCCCCC-C-CcEEEecCcchH
Confidence 46678998765421 123333322 35689998776531 1 1344565433 2 445555556553
No 303
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=22.22 E-value=43 Score=26.81 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=10.9
Q ss_pred hcCEEEEcCCchhhHH
Q 033246 11 NSDCFIALPGGYGTLE 26 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLd 26 (123)
.+| .|+||||++|.-
T Consensus 38 ~~D-gLILPGGfs~~~ 52 (248)
T PLN02832 38 GVS-GLIIPGGESTTM 52 (248)
T ss_pred cCC-EEEeCCCHHHHH
Confidence 344 678999998743
No 304
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=22.19 E-value=86 Score=15.25 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=13.4
Q ss_pred CCccHHHHHHHHHHHHcCC
Q 033246 50 DGYYNSLLNFIDKAVDDGF 68 (123)
Q Consensus 50 ~gf~~~l~~~l~~~~~~gf 68 (123)
.|.++...++++.|.+.|+
T Consensus 13 ~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 13 MGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cchHHHHHHHHHHHhHCcC
Confidence 3567777777777777664
No 305
>PF14953 DUF4504: Domain of unknown function (DUF4504)
Probab=22.01 E-value=2e+02 Score=23.17 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=37.7
Q ss_pred CCcEEEEeCCCc-cHHHHHHHHHH-----HHcCCCCcc----cccceEEcCCHHHHHHHHHhh
Q 033246 41 DKPVGLINVDGY-YNSLLNFIDKA-----VDDGFISPS----QRSILVSAPNAKELVQKLEEY 93 (123)
Q Consensus 41 ~kPiilln~~gf-~~~l~~~l~~~-----~~~gfi~~~----~~~~i~~~dd~ee~l~~l~~~ 93 (123)
-||.++++..+. +..+.+.+..+ .+.+++... ..+--.+.=+++++.+.++.-
T Consensus 32 LRpa~L~Dy~~~~~~~lq~~L~~L~~~~~q~~~~~~~~L~vl~I~~~~~lvn~~~~~~~le~~ 94 (270)
T PF14953_consen 32 LRPAVLYDYNGAGAPQLQEYLCSLLRLAQQESGLLFQNLRVLVIDDNILLVNPKELLEHLESS 94 (270)
T ss_pred CccEEEEEcCCCCHHHHHHHHHHhhhhhhcccchhccceEEEEEcCcEEEEeHHHHHHHHHHH
Confidence 599999999888 89999988888 666655332 112224555688888888773
No 306
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=21.88 E-value=2e+02 Score=21.08 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=43.9
Q ss_pred HHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCC---------CCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccc
Q 033246 4 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGI---------HDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQR 74 (123)
Q Consensus 4 RK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~---------~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~ 74 (123)
+...+...+|++|+ |-+|+.-....++-.-.+. ...|.+++...+.+..- ..+.+.. .
T Consensus 33 ~~~~l~~~~dail~---G~~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vV~s~~~~~~~~---------~~~~~~~-~ 99 (200)
T PF01872_consen 33 FLHELRSEADAILV---GRNTVRADNPSLTVRWPGDPPPRERGRAKQPPKVVVSRSLKLPPD---------ARLFNDD-K 99 (200)
T ss_dssp HHHHHHHHCSEEEE---EHHHHHHHTHHTSSHSSTSSCHHCTTCHSSSEEEEEESTCCTTTT---------CCCCSSS-S
T ss_pred HHHHHHhhCCEEEe---ccchhhhcCccccccCccccchhhhhhccCCeEEEEecccccccc---------cccccCC-C
Confidence 44556667888887 4477766554433222222 45567777666543211 1144444 4
Q ss_pred cceEEcCC---------------HHHHHHHHHhh
Q 033246 75 SILVSAPN---------------AKELVQKLEEY 93 (123)
Q Consensus 75 ~~i~~~dd---------------~ee~l~~l~~~ 93 (123)
..++++.. ++++++.|++.
T Consensus 100 ~~~v~~s~~~~~~~~~~l~v~~dl~~~l~~L~~~ 133 (200)
T PF01872_consen 100 PVLVITSEKAPDEYLERLRVRVDLEEALRRLKER 133 (200)
T ss_dssp SEEEEEESTSSHHHHHHHHESEHHHHHHHHHHHT
T ss_pred ceEEEeecccccccccceEEecCHHHHHHHHHhc
Confidence 55555555 88888888876
No 307
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=21.80 E-value=1.7e+02 Score=20.60 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=18.8
Q ss_pred cCEEEEcCCchhhHH-----HHHHHHHHHHhCCCCCcEEEEeC
Q 033246 12 SDCFIALPGGYGTLE-----ELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 12 sDa~I~lPGG~GTLd-----El~evlt~~qlg~~~kPiilln~ 49 (123)
.|+ |++|||.|... ++.+.+. +...+.|||+-+..
T Consensus 61 ~D~-vvv~Gg~~~~~~~~~~~l~~~l~--~~~~~~~~i~~ic~ 100 (166)
T TIGR01382 61 YDA-LVIPGGRAPEYLRLNNKAVRLVR--EFVEKGKPVAAICH 100 (166)
T ss_pred CcE-EEECCCCCHHHhccCHHHHHHHH--HHHHcCCEEEEECh
Confidence 354 56888887532 2222221 22246788877654
No 308
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.62 E-value=1.4e+02 Score=22.80 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=8.8
Q ss_pred HhcCEEEEcCCc
Q 033246 10 RNSDCFIALPGG 21 (123)
Q Consensus 10 ~~sDa~I~lPGG 21 (123)
+.+|++ ++||+
T Consensus 36 ~~~D~l-IlPG~ 46 (192)
T PRK13142 36 DQAETI-ILPGV 46 (192)
T ss_pred ccCCEE-EECCC
Confidence 457887 88998
No 309
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=21.53 E-value=3.3e+02 Score=19.79 Aligned_cols=57 Identities=16% Similarity=0.266 Sum_probs=30.0
Q ss_pred EEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHH-HHHHHcCCCCcccccceEEcCCHHHHHHHHHhh
Q 033246 15 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFI-DKAVDDGFISPSQRSILVSAPNAKELVQKLEEY 93 (123)
Q Consensus 15 ~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l-~~~~~~gfi~~~~~~~i~~~dd~ee~l~~l~~~ 93 (123)
.|++-||-|+= ..+|++.-++. .+|+.+. +.+.+.+.+ +.+.++.+.+++.+.+.++
T Consensus 4 ~iIlA~G~s~R-------------~~~K~l~~l~G----kpll~~~l~~l~~~~~~-----~~IvV~~~~~~i~~~~~~~ 61 (223)
T cd02513 4 AIIPARGGSKG-------------IPGKNIRPLGG----KPLIAWTIEAALESKLF-----DRVVVSTDDEEIAEVARKY 61 (223)
T ss_pred EEEecCCCCCC-------------CCCcccchhCC----ccHHHHHHHHHHhCCCC-----CEEEEECCcHHHHHHHHHh
Confidence 56667776621 23577766664 3444442 344443333 2355555656666666543
No 310
>cd05141 Barstar_evA4336-like Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=21.53 E-value=59 Score=21.15 Aligned_cols=30 Identities=17% Similarity=0.398 Sum_probs=17.9
Q ss_pred hHHHHHHHhcCEEEEcCCchh-hHHHHHHHHH
Q 033246 3 QRKAEMARNSDCFIALPGGYG-TLEELLEVIT 33 (123)
Q Consensus 3 eRK~~m~~~sDa~I~lPGG~G-TLdEl~evlt 33 (123)
++...+.+.|.++ -+|+-+| .+|=+.+.++
T Consensus 10 ~~~~~~~~l~~~l-~fP~yfG~NlDAl~DcL~ 40 (81)
T cd05141 10 DKAALLDALAAAL-DFPSWFGHNWDALADCLT 40 (81)
T ss_pred CHHHHHHHHHHHc-CCCccccCCHHHHHHHHc
Confidence 4445555666666 6666666 5666666554
No 311
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=21.38 E-value=2.1e+02 Score=21.17 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=21.9
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
+.....||+|++|.-... +.+ .++...+.|+|++|.
T Consensus 51 l~~~~vdgiii~~~~~~~-~~~------~~~~~~~ipvV~~~~ 86 (264)
T cd06274 51 LIARQVDALIVAGSLPPD-DPY------YLCQKAGLPVVALDR 86 (264)
T ss_pred HHHcCCCEEEEcCCCCch-HHH------HHHHhcCCCEEEecC
Confidence 345578999999875432 211 122234678888876
No 312
>PHA02448 hypothetical protein
Probab=21.33 E-value=1.7e+02 Score=22.03 Aligned_cols=55 Identities=29% Similarity=0.343 Sum_probs=34.0
Q ss_pred chHHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcC
Q 033246 2 HQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDG 67 (123)
Q Consensus 2 ~eRK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~g 67 (123)
.||..++.+++|||.+| ||||-.-+..+ .|+. .+---| --=..+.++++.+.+.|
T Consensus 135 aernallhelgdacaal-----tldektvaaqf--ygky--kvtarn--akpaqlrefiddlmeng 189 (192)
T PHA02448 135 AERNALLHELGDACAAL-----TLDEKTVAAQF--YGKY--KVTARN--AKPAQLREFIDDLMENG 189 (192)
T ss_pred HHHHHHHHHHHHHHHhh-----hcchHHHHHHh--hcce--eeeecc--CChHHHHHHHHHHHhcC
Confidence 48999999999999887 89987655543 2211 111111 12245667777666554
No 313
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.23 E-value=85 Score=24.45 Aligned_cols=27 Identities=7% Similarity=0.288 Sum_probs=20.9
Q ss_pred HHHHhcCEEEEcCCchhhHHHHHHHHH
Q 033246 7 EMARNSDCFIALPGGYGTLEELLEVIT 33 (123)
Q Consensus 7 ~m~~~sDa~I~lPGG~GTLdEl~evlt 33 (123)
.+.+.++.-|+.-||++|++.+.+++.
T Consensus 186 ~l~~~~~ipvi~~GGi~s~edi~~l~~ 212 (234)
T PRK13587 186 QLVKATTIPVIASGGIRHQQDIQRLAS 212 (234)
T ss_pred HHHHhCCCCEEEeCCCCCHHHHHHHHH
Confidence 344556778888899999999988774
No 314
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=21.11 E-value=2.2e+02 Score=21.31 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=21.1
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
....|++|+.|.-.. ++..+.+ ...+.|+++++.
T Consensus 53 ~~~vdgvi~~~~~~~--~~~~~~l-----~~~~iPvv~~~~ 86 (269)
T cd06297 53 AYLTDGLLLASYDLT--ERLAERR-----LPTERPVVLVDA 86 (269)
T ss_pred hcCCCEEEEecCccC--hHHHHHH-----hhcCCCEEEEcc
Confidence 346999999986543 2222222 234678888874
No 315
>CHL00101 trpG anthranilate synthase component 2
Probab=20.99 E-value=1e+02 Score=22.89 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=10.4
Q ss_pred hcCEEEEcCCchhhHHH
Q 033246 11 NSDCFIALPGGYGTLEE 27 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdE 27 (123)
.-|++|+.||- |...+
T Consensus 43 ~~dgiiisgGp-g~~~~ 58 (190)
T CHL00101 43 NIRHIIISPGP-GHPRD 58 (190)
T ss_pred CCCEEEECCCC-CChHH
Confidence 35788877666 66544
No 316
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=20.97 E-value=4e+02 Score=22.03 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=34.0
Q ss_pred CEEEEcCC---chhhHHHHHHHHHHHHhCCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHH
Q 033246 13 DCFIALPG---GYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQK 89 (123)
Q Consensus 13 Da~I~lPG---G~GTLdEl~evlt~~qlg~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l~~ 89 (123)
|+| ++|- |+|.- +.|+++. .+|+|..+..| ...++ .. .....++-..|++++.+.
T Consensus 342 Dv~-v~pS~~E~fg~~--~lEAma~------G~PvV~s~~gg-~~eiv-------~~-----~~~G~lv~~~d~~~la~~ 399 (439)
T TIGR02472 342 GIF-VNPALTEPFGLT--LLEAAAC------GLPIVATDDGG-PRDII-------AN-----CRNGLLVDVLDLEAIASA 399 (439)
T ss_pred CEE-ecccccCCcccH--HHHHHHh------CCCEEEeCCCC-cHHHh-------cC-----CCcEEEeCCCCHHHHHHH
Confidence 454 5554 55543 6666664 89999998754 23222 11 122333445678888777
Q ss_pred HHhh
Q 033246 90 LEEY 93 (123)
Q Consensus 90 l~~~ 93 (123)
|.+.
T Consensus 400 i~~l 403 (439)
T TIGR02472 400 LEDA 403 (439)
T ss_pred HHHH
Confidence 7664
No 317
>PLN02929 NADH kinase
Probab=20.89 E-value=1.6e+02 Score=24.33 Aligned_cols=33 Identities=36% Similarity=0.374 Sum_probs=22.2
Q ss_pred hcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 11 NSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 11 ~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
.+|.+|+ =||=||+--.+. ++ ...+||+=+|.+
T Consensus 64 ~~Dlvi~-lGGDGT~L~aa~-----~~-~~~iPvlGIN~G 96 (301)
T PLN02929 64 DVDLVVA-VGGDGTLLQASH-----FL-DDSIPVLGVNSD 96 (301)
T ss_pred CCCEEEE-ECCcHHHHHHHH-----Hc-CCCCcEEEEECC
Confidence 4565555 588999875443 33 457899988874
No 318
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=20.86 E-value=2.5e+02 Score=22.18 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=22.0
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
....|++|++|...-..++..+.+. ..+.|+|+++.
T Consensus 79 ~~~vdgiIi~~~~~~~~~~~l~~l~-----~~giPvV~vd~ 114 (330)
T PRK15395 79 AKGVKALAINLVDPAAAPTVIEKAR-----GQDVPVVFFNK 114 (330)
T ss_pred HcCCCEEEEeccCHHHHHHHHHHHH-----HCCCcEEEEcC
Confidence 3478999999866433444433332 23567777775
No 319
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=20.81 E-value=3.3e+02 Score=20.14 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=31.7
Q ss_pred CCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHH
Q 033246 41 DKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKEL 86 (123)
Q Consensus 41 ~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~ 86 (123)
.+|++++...---.|++.+++.+...+ +......++.+.+++++
T Consensus 98 ~~~ivliagG~GiaP~~~~l~~l~~~~--~~~~v~l~~~~r~~~~~ 141 (224)
T cd06189 98 DRPLILIAGGTGFAPIKSILEHLLAQG--SKRPIHLYWGARTEEDL 141 (224)
T ss_pred CCCEEEEecCcCHHHHHHHHHHHHhcC--CCCCEEEEEecCChhhc
Confidence 578888887657889999888877654 23455677777887655
No 320
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=20.65 E-value=89 Score=25.31 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=29.2
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeCC
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVD 50 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~~ 50 (123)
+.+.+..+.-|+.-||+|+++.+..+..+ + ..+--++++..
T Consensus 200 ~~l~~~~~ipVIASGGv~sleDi~~L~~~---g-~g~~gvIvGkA 240 (262)
T PLN02446 200 ALLGEHSPIPVTYAGGVRSLDDLERVKVA---G-GGRVDVTVGSA 240 (262)
T ss_pred HHHHhhCCCCEEEECCCCCHHHHHHHHHc---C-CCCEEEEEEee
Confidence 34556677889999999999999987653 3 23444666654
No 321
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=20.55 E-value=3e+02 Score=18.95 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=34.4
Q ss_pred hCCCCCcEEEEeCCCccHHHHHHHHHH-HHcCCCCcccccceEEcCCHHHHHHHHHhh
Q 033246 37 LGIHDKPVGLINVDGYYNSLLNFIDKA-VDDGFISPSQRSILVSAPNAKELVQKLEEY 93 (123)
Q Consensus 37 lg~~~kPiilln~~gf~~~l~~~l~~~-~~~gfi~~~~~~~i~~~dd~ee~l~~l~~~ 93 (123)
++-+-+|++.++.+|-=+.+++.++.. -....|.-.-... .-++..|+.+.|+..
T Consensus 14 ~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~--~~~~~~e~~~~i~~~ 69 (97)
T PRK10343 14 LAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATE--DRETKTLIVEAIVRE 69 (97)
T ss_pred hcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCC--ChhHHHHHHHHHHHH
Confidence 334579999999999999999999864 4443442221111 123346666666664
No 322
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.55 E-value=45 Score=25.93 Aligned_cols=37 Identities=30% Similarity=0.621 Sum_probs=22.9
Q ss_pred CEEEEcCCchhhHHHHHH-------------HHHHHHhC-CCCCcEEEEeCC
Q 033246 13 DCFIALPGGYGTLEELLE-------------VITWAQLG-IHDKPVGLINVD 50 (123)
Q Consensus 13 Da~I~lPGG~GTLdEl~e-------------vlt~~qlg-~~~kPiilln~~ 50 (123)
||+ ++|||||.---+.. ++.+.|.= ...||+.+.-+.
T Consensus 87 DAL-ivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIa 137 (217)
T COG3155 87 DAL-IVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIA 137 (217)
T ss_pred cee-eccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEec
Confidence 554 57999998766653 23333332 347888877654
No 323
>PTZ00378 hypothetical protein; Provisional
Probab=20.53 E-value=3.6e+02 Score=24.17 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=43.8
Q ss_pred HHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcE--EEEeCCCccHHHHHHHHHHHHcCCCC
Q 033246 4 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPV--GLINVDGYYNSLLNFIDKAVDDGFIS 70 (123)
Q Consensus 4 RK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPi--illn~~gf~~~l~~~l~~~~~~gfi~ 70 (123)
++.+-...++++++=|.=+||+.|.+++..+.+-.- .+.| ++-..+| =|.++.-|---...+||.
T Consensus 389 ~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g-~~~v~v~vShRSG-eD~~IAdLAVa~ga~~IK 455 (518)
T PTZ00378 389 ESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDE-GRAVTVLVQTLAG-NAATAAHLAVAMGARFLC 455 (518)
T ss_pred HHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcC-CcEEccccCCCcC-CccHHHHHHHHcCCCccc
Confidence 344555678999999999999999999998866532 2333 2333345 566776665555566654
No 324
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=20.52 E-value=64 Score=20.68 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=11.1
Q ss_pred EEEEcCCchhhHH
Q 033246 14 CFIALPGGYGTLE 26 (123)
Q Consensus 14 a~I~lPGG~GTLd 26 (123)
+.++.|.|+||-.
T Consensus 3 ilivC~~G~~tS~ 15 (89)
T cd05566 3 ILVACGTGVATST 15 (89)
T ss_pred EEEECCCCccHHH
Confidence 6899999999953
No 325
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=20.43 E-value=1.8e+02 Score=21.37 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=22.0
Q ss_pred HHHHHhcCEEEEcCCchhhHHHHHHHHH
Q 033246 6 AEMARNSDCFIALPGGYGTLEELLEVIT 33 (123)
Q Consensus 6 ~~m~~~sDa~I~lPGG~GTLdEl~evlt 33 (123)
......+|.++-.+||-|...|+.+.+-
T Consensus 142 ~~~~~~a~~v~~~~~g~g~~~el~~~i~ 169 (183)
T PRK09484 142 PLLLPRADYVTRIAGGRGAVREVCDLLL 169 (183)
T ss_pred HHHHHhCCEEecCCCCCCHHHHHHHHHH
Confidence 3455677887779999999999987663
No 326
>TIGR03476 HpnL putative membrane protein. This family of hydrophobic proteins is observed in two distinct contexts. It is primarily found in the presence of genes for the biosynthesis and elaboration of hopene where we assign the gene symbol HpnL. In a subset of the genomes containing HpnL a second, often plasmid-encoded, homolog is observed in a context implying the biosynthesis of 2-aminoethylphosphonate head-group containing lipids.
Probab=20.43 E-value=36 Score=27.08 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=16.3
Q ss_pred EEEEcCCchhhHHHHHHHHHHHHhCC
Q 033246 14 CFIALPGGYGTLEELLEVITWAQLGI 39 (123)
Q Consensus 14 a~I~lPGG~GTLdEl~evlt~~qlg~ 39 (123)
++..+|||.|+-|=.+- ..+...|.
T Consensus 263 ~~~~~PGg~G~~E~~~~-~~l~~~Gv 287 (318)
T TIGR03476 263 AAFLVPGALGVQEGGYI-LLGPLFGL 287 (318)
T ss_pred hHccCCchhhHHHHHHH-HHHHHcCC
Confidence 35678999999765543 44544453
No 327
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=20.33 E-value=41 Score=22.94 Aligned_cols=41 Identities=17% Similarity=0.401 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHhhcCCCC
Q 033246 58 NFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHD 98 (123)
Q Consensus 58 ~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l~~l~~~~~~~~ 98 (123)
.+++++...|++..++-+.+.-..++.+=+..|-.+.++.+
T Consensus 19 plLD~Ll~n~~it~E~y~~V~a~~T~qdkmRkLld~v~akG 59 (85)
T cd08324 19 CLVDNLLKNDYFSTEDAEIVCACPTQPDKVRKILDLVQSKG 59 (85)
T ss_pred HHHHHHhccCCccHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 45678999999999999999999998877776666655444
No 328
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=20.31 E-value=3e+02 Score=20.38 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=33.2
Q ss_pred CCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHH
Q 033246 41 DKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELV 87 (123)
Q Consensus 41 ~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l 87 (123)
.+|++++...---.|++.+++.+.+.+.-.......++.+.+.+++.
T Consensus 97 ~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~~~ 143 (232)
T cd06190 97 DRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLC 143 (232)
T ss_pred CCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHHHh
Confidence 57888887654578889988887765333345567788888887664
No 329
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=20.29 E-value=2.8e+02 Score=21.43 Aligned_cols=67 Identities=24% Similarity=0.161 Sum_probs=41.6
Q ss_pred HHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHh-CCCCCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCH
Q 033246 5 KAEMARNSDCFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNA 83 (123)
Q Consensus 5 K~~m~~~sDa~I~lPGG~GTLdEl~evlt~~ql-g~~~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ 83 (123)
.....+.+|.+|++ ||--.+.-+..+... ...+.|++++|.+... + .....+.+..+.
T Consensus 171 a~~~~~~~dl~lvi----GTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~---------------~--~~~~~~~i~~~~ 229 (242)
T PRK00481 171 AYEALEEADLFIVI----GTSLVVYPAAGLPYEAREHGAKTVEINLEPTP---------------L--DSLFDLVIHGKA 229 (242)
T ss_pred HHHHHhcCCEEEEE----CCCceEcCHhHHHHHHHHCCCeEEEECCCCCC---------------C--CCccCEEEECCH
Confidence 33445678999985 355555444444432 2457899999986311 1 111346888899
Q ss_pred HHHHHHHHh
Q 033246 84 KELVQKLEE 92 (123)
Q Consensus 84 ee~l~~l~~ 92 (123)
++++..|.+
T Consensus 230 ~~~l~~l~~ 238 (242)
T PRK00481 230 GEVVPELVE 238 (242)
T ss_pred HHHHHHHHH
Confidence 999988754
No 330
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=20.27 E-value=2.9e+02 Score=21.07 Aligned_cols=36 Identities=14% Similarity=-0.013 Sum_probs=21.2
Q ss_pred HHhcCEEEEcCCchhhHHHHHHHHHHHHhCCCCCcEEEEeC
Q 033246 9 ARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINV 49 (123)
Q Consensus 9 ~~~sDa~I~lPGG~GTLdEl~evlt~~qlg~~~kPiilln~ 49 (123)
.+..|++|+.|-..-.+.+..+.+ .....|+|+++.
T Consensus 54 ~~~vdgiIi~~~~~~~~~~~l~~~-----~~~giPvV~~~~ 89 (302)
T TIGR02637 54 AQKVDAIAISANDPDALVPALKKA-----MKRGIKVVTWDS 89 (302)
T ss_pred HcCCCEEEEeCCChHHHHHHHHHH-----HHCCCEEEEeCC
Confidence 457899999885432333333322 224568888874
No 331
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=20.18 E-value=1.3e+02 Score=22.91 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=19.1
Q ss_pred HhcCEEEEcCCchhhHHHHHHHHHHHH-hCCCCCcEEEE
Q 033246 10 RNSDCFIALPGGYGTLEELLEVITWAQ-LGIHDKPVGLI 47 (123)
Q Consensus 10 ~~sDa~I~lPGG~GTLdEl~evlt~~q-lg~~~kPiill 47 (123)
+.-|++|+.||. |..++.-....+.+ .-..++||+=+
T Consensus 45 ~~~dgliisGGp-~~~~~~~~~~~~i~~~~~~~~PiLGI 82 (214)
T PRK07765 45 AQFDGVLLSPGP-GTPERAGASIDMVRACAAAGTPLLGV 82 (214)
T ss_pred cCCCEEEECCCC-CChhhcchHHHHHHHHHhCCCCEEEE
Confidence 457887777766 45543332222322 22346886543
No 332
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=20.15 E-value=2.9e+02 Score=21.53 Aligned_cols=41 Identities=29% Similarity=0.351 Sum_probs=22.6
Q ss_pred HHHhcCEEEEcCCchhhHHH------HHHHHHHHHhC-CCCCcEEEEeCC
Q 033246 8 MARNSDCFIALPGGYGTLEE------LLEVITWAQLG-IHDKPVGLINVD 50 (123)
Q Consensus 8 m~~~sDa~I~lPGG~GTLdE------l~evlt~~qlg-~~~kPiilln~~ 50 (123)
.+..+|++|+-+||+ +.. +..-+....+- ..+||+++++.+
T Consensus 61 ~l~~~D~vI~gGG~l--~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~g 108 (298)
T TIGR03609 61 ALRRADVVIWGGGSL--LQDVTSFRSLLYYLGLMRLARLFGKPVILWGQG 108 (298)
T ss_pred HHHHCCEEEECCccc--ccCCcccccHHHHHHHHHHHHHcCCCEEEEecc
Confidence 467889988655543 222 11111222222 358999999874
No 333
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=20.11 E-value=2.4e+02 Score=20.89 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=33.7
Q ss_pred CCcEEEEeCCCccHHHHHHHHHHHHcCCCCcccccceEEcCCHHHHH
Q 033246 41 DKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELV 87 (123)
Q Consensus 41 ~kPiilln~~gf~~~l~~~l~~~~~~gfi~~~~~~~i~~~dd~ee~l 87 (123)
.+|++++...---.|++.+++.+...+ +......++.+.+.+++.
T Consensus 102 ~~~~vlia~GtGIaP~~~ll~~~~~~~--~~~~v~l~~~~r~~~~~~ 146 (228)
T cd06209 102 KRPLLMLAGGTGLAPFLSMLDVLAEDG--SAHPVHLVYGVTRDADLV 146 (228)
T ss_pred CCeEEEEEcccCHhHHHHHHHHHHhcC--CCCcEEEEEecCCHHHhc
Confidence 478888887657889999998877665 344567788888877654
No 334
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=20.04 E-value=1.2e+02 Score=23.23 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=29.8
Q ss_pred HHHHHHHhcCEEEEcCCchhhHHHHHHHHHHHHhC-CCCCcEEEEeCC
Q 033246 4 RKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLINVD 50 (123)
Q Consensus 4 RK~~m~~~sDa~I~lPGG~GTLdEl~evlt~~qlg-~~~kPiilln~~ 50 (123)
+-...++.||.+|+ +||=-.+.=+..+...- ....|++++|.+
T Consensus 148 ~a~~~~~~aDlllv----iGTSl~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 148 GAAAAACRADLFLC----LGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred HHHHHHhcCCEEEE----ECcCceehhHHHHHHHHHhcCCeEEEECCC
Confidence 44556678999999 56666665555555432 457899999985
Done!