BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033248
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2JN82|PSBX_SYNJB Photosystem II reaction center X protein OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=psbX PE=3 SV=1
Length = 38
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 86 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 122
++PSL NFL S+VAG VVL A+ GA+I V+ D V+R
Sbjct: 1 MTPSLANFLWSLVAGAVVLGALFGAIIFVSQRDKVRR 37
>sp|Q2JRN5|PSBX2_SYNJA Photosystem II reaction center X protein 2 OS=Synechococcus sp.
(strain JA-3-3Ab) GN=psbX2 PE=3 SV=1
Length = 38
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 86 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 122
++PSL NFL S+V G VVL + GA++ V+ D V+R
Sbjct: 1 MTPSLANFLWSLVYGAVVLGLLFGAIVFVSQRDRVRR 37
>sp|Q2JRR9|PSBX1_SYNJA Photosystem II reaction center X protein 1 OS=Synechococcus sp.
(strain JA-3-3Ab) GN=psbX1 PE=3 SV=1
Length = 38
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 86 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 122
++PSL NFL S++ G VVL + GA++ V+ D V+R
Sbjct: 1 MTPSLANFLWSLLYGAVVLGLLFGAIVFVSQRDRVRR 37
>sp|B0JX68|PSBX_MICAN Photosystem II reaction center X protein OS=Microcystis aeruginosa
(strain NIES-843) GN=psbX PE=3 SV=2
Length = 39
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 86 LSPSLKNFLLSIVAGG--VVLAAIVGAVIGVANFDPVKRT 123
++PSL NFL S+V G V++ A +G +I ++ +D +KRT
Sbjct: 1 MTPSLANFLWSLVLGAAIVLIPATIG-LIFISQYDKIKRT 39
>sp|Q9F1R6|PSBX_THEEB Photosystem II reaction center X protein OS=Thermosynechococcus
elongatus (strain BP-1) GN=psbX PE=1 SV=2
Length = 41
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 86 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT 123
++PSLK F + +++G VVL +I ++ D V+R+
Sbjct: 3 ITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS 40
>sp|P49509|PSBX_ODOSI Photosystem II reaction center X protein OS=Odontella sinensis
GN=psbX PE=3 SV=1
Length = 38
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 86 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 122
++PSL NF+ S+ AGG+V+ I A+I ++ D V R
Sbjct: 1 MTPSLANFISSLTAGGLVVLTIAVALIVISRTDRVTR 37
>sp|Q5XIN6|LETM1_RAT LETM1 and EF-hand domain-containing protein 1, mitochondrial
OS=Rattus norvegicus GN=Letm1 PE=1 SV=1
Length = 739
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 42 GKPKSRARLQVQASLKEKAVTGLTAAALTASMVIPEVAEAA-----GSGLSPSL 90
K K A LQ +A+++++ + L AA TA + PEVAEA G+ L P +
Sbjct: 461 NKAKLEATLQEEAAIQQEHLEELKRAAETAKDIQPEVAEATVPGRPGAELQPKM 514
>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1
Length = 347
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 4 VSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKAVTG 63
V + L+S ++ RLI P+ +KP + ++ KP + +L +AV
Sbjct: 155 VRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQ 214
Query: 64 LTAAALTASMVIPEVAEA-AGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFD 118
TA L S + + G+ L+ F + G+VL +G + G A D
Sbjct: 215 TTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVL---IGEIGGTAEED 267
>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2
Length = 341
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 10 LSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKAVTGLTAAAL 69
L+S ++ RLI P+ +KP + ++ KP + +L +AV TA L
Sbjct: 156 LNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGL 215
Query: 70 TASMVIPEVAEA-AGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFD 118
S + + G+ L+ F + G+VL +G + G A D
Sbjct: 216 GQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVL---IGEIGGTAEED 262
>sp|P39215|MCPB_BACSU Methyl-accepting chemotaxis protein McpB OS=Bacillus subtilis
(strain 168) GN=mcpB PE=1 SV=2
Length = 662
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 64 LTAAALTASMVIPEVAEAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 122
LT + +M + E+ +A+ S L+ + + SIVAGG+++ IV ++ P+KR
Sbjct: 259 LTGWKIAGTMYMDEIKDASKSVLTTGMIVLIASIVAGGILILFIVRSIT-----KPLKR 312
>sp|A3LWH8|YD156_PICST WD repeat-containing protein PICST_83842 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=PRW1 PE=3 SV=2
Length = 514
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 3 SVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKAVT 62
S+ +P +S T+ R P +++ +K V PS+ +R + KS + + K+
Sbjct: 33 SIKRELPRASETKKRKTTPRTKA-VKKEDVEPSRRSRRIAGIKSELENPEEYNHKKSGSL 91
Query: 63 GLTAAALTASMVIPEVAEAAGSGLSPSLKN 92
+ + PEV + LS +KN
Sbjct: 92 KFEDKVIKSDSTEPEVKQEEKEELSEDIKN 121
>sp|Q4P0N6|NDE1_USTMA Nuclear distribution protein nudE homolog 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=NDE1 PE=3 SV=1
Length = 646
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 4 VSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSR 47
+S A ++S+T + P SE P++PS AAR +P SR
Sbjct: 206 ISRADTMASSTYDDSTAPRSEQSFDSSPIKPSSAARATERPSSR 249
>sp|A5GQT7|PSBX_SYNR3 Photosystem II reaction center X protein OS=Synechococcus sp.
(strain RCC307) GN=psbX PE=3 SV=1
Length = 40
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 86 LSPSLKNFLLSIVAGG-VVLAAIVGAVIGVANFDPVKR 122
++PSL NFL S+VAG +V+ I A+I ++ D V R
Sbjct: 1 MTPSLANFLNSLVAGALIVVVPITIALILISQTDQVDR 38
>sp|P07208|VSIB_TRYBB Variant surface glycoprotein ILTAT 1.1BC OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 471
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 34 PSKAARFLGKPKSRARLQVQASLKEKAVTGLTAAALTASMVIPEVAEAAGSGLSPSLKNF 93
P + A+ L K K +++VQ +++++ G L ++I + AG G S +F
Sbjct: 36 PCRCAQRLEKLKKHCQMRVQTAVRKQKENG----KLAQKLLIGTITSTAGGGEQTSTTSF 91
Query: 94 LLS 96
LLS
Sbjct: 92 LLS 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.127 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,023,481
Number of Sequences: 539616
Number of extensions: 1171214
Number of successful extensions: 5775
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 5763
Number of HSP's gapped (non-prelim): 35
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)