Query 033248
Match_columns 123
No_of_seqs 91 out of 93
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 19:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_X Photosystem II PSBX pro 99.8 3.1E-22 1.1E-26 124.7 2.6 39 85-123 1-39 (39)
2 3bz1_X Photosystem II PSBX pro 99.8 2.3E-21 7.7E-26 126.2 2.9 40 84-123 10-49 (50)
3 2zvk_U DNA polymerase ETA, pro 31.3 8.8 0.0003 21.8 -0.2 12 22-33 11-22 (26)
4 1nvp_C Transcription initiatio 17.6 21 0.00072 24.3 -0.5 12 112-123 34-45 (76)
5 1ztd_A Hypothetical protein PF 15.5 67 0.0023 23.9 1.7 13 88-100 20-32 (133)
6 1nh2_C Transcription initiatio 15.2 26 0.0009 24.0 -0.5 12 112-123 36-47 (79)
7 2qjy_C Ubiquinol-cytochrome C 12.6 1.2E+02 0.0042 22.1 2.4 34 87-120 8-41 (187)
8 2ks1_B Epidermal growth factor 12.2 64 0.0022 19.6 0.7 9 98-106 17-25 (44)
9 2k1k_A Ephrin type-A receptor 11.8 1.1E+02 0.0039 17.7 1.7 17 94-110 13-29 (38)
10 2l8s_A Integrin alpha-1; trans 10.7 1.3E+02 0.0044 19.2 1.7 30 94-123 13-42 (54)
No 1
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=99.84 E-value=3.1e-22 Score=124.67 Aligned_cols=39 Identities=33% Similarity=0.711 Sum_probs=37.9
Q ss_pred CCChhHHHHHHHHHHhHHHHHHHhhheeeeeccCcccCC
Q 033248 85 GLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT 123 (123)
Q Consensus 85 ~mTPSL~NFL~SLvaGgvVv~~i~~Ali~VSq~D~V~R~ 123 (123)
+|||||+|||+||+|||+|+++|++||++|||+||++|+
T Consensus 1 ~mTpSL~nFl~Sl~aG~vvvv~i~~ali~VSq~D~v~R~ 39 (39)
T 3arc_X 1 TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS 39 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred CcChhHHHHHHHHHHHHHHHHHHHHHheeEeccCccccC
Confidence 599999999999999999999999999999999999996
No 2
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=99.82 E-value=2.3e-21 Score=126.21 Aligned_cols=40 Identities=33% Similarity=0.676 Sum_probs=36.6
Q ss_pred CCCChhHHHHHHHHHHhHHHHHHHhhheeeeeccCcccCC
Q 033248 84 SGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT 123 (123)
Q Consensus 84 ~~mTPSL~NFL~SLvaGgvVv~~i~~Ali~VSq~D~V~R~ 123 (123)
.+|||||+|||+||+|||+|+++|++||++|||+||++|+
T Consensus 10 ~~mTpSL~NFl~SlvaG~vVvv~i~~aLi~VSq~D~v~R~ 49 (50)
T 3bz1_X 10 LTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS 49 (50)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHheeeeccCccccC
Confidence 4799999999999999999999999999999999999996
No 3
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=31.25 E-value=8.8 Score=21.82 Aligned_cols=12 Identities=50% Similarity=0.744 Sum_probs=9.2
Q ss_pred CccccccCCCCC
Q 033248 22 SSESFLKPLPVR 33 (123)
Q Consensus 22 ss~~~~~Plp~r 33 (123)
+-++|||||+..
T Consensus 11 TLesFFK~L~~~ 22 (26)
T 2zvk_U 11 TLESFFKPLTHX 22 (26)
T ss_pred cHHHHhccCCcc
Confidence 468999999743
No 4
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=17.64 E-value=21 Score=24.33 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=9.9
Q ss_pred eeeeccCcccCC
Q 033248 112 IGVANFDPVKRT 123 (123)
Q Consensus 112 i~VSq~D~V~R~ 123 (123)
+.+.|+|+|+|+
T Consensus 34 ~vlC~ydKV~R~ 45 (76)
T 1nvp_C 34 VVVCQYDKIHRS 45 (76)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEecc
Confidence 568999999884
No 5
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=15.51 E-value=67 Score=23.94 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHh
Q 033248 88 PSLKNFLLSIVAG 100 (123)
Q Consensus 88 PSL~NFL~SLvaG 100 (123)
.||-||++|+..-
T Consensus 20 DSLvNfl~SlALs 32 (133)
T 1ztd_A 20 DSLINFLYSLALT 32 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999754
No 6
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=15.15 E-value=26 Score=24.02 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=9.9
Q ss_pred eeeeccCcccCC
Q 033248 112 IGVANFDPVKRT 123 (123)
Q Consensus 112 i~VSq~D~V~R~ 123 (123)
+.+.|+|+|+|.
T Consensus 36 ~vlC~ydKV~R~ 47 (79)
T 1nh2_C 36 LMLCLYDKVTRT 47 (79)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEeee
Confidence 678899999884
No 7
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=12.55 E-value=1.2e+02 Score=22.11 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHHHhHHHHHHHhhheeeeeccCcc
Q 033248 87 SPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPV 120 (123)
Q Consensus 87 TPSL~NFL~SLvaGgvVv~~i~~Ali~VSq~D~V 120 (123)
.++=.+||.-+..|...+++...++-+|++.+|.
T Consensus 8 ~~~RR~Fl~~~~~~~~~~~a~~~~~p~v~~~~p~ 41 (187)
T 2qjy_C 8 AGTRRDFLYYATAGAGAVATGAAVWPLINQMNPS 41 (187)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4566777776555444444445555566666654
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=12.22 E-value=64 Score=19.58 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=3.7
Q ss_pred HHhHHHHHH
Q 033248 98 VAGGVVLAA 106 (123)
Q Consensus 98 vaGgvVv~~ 106 (123)
|.||+.+++
T Consensus 17 VVgGv~~~~ 25 (44)
T 2ks1_B 17 MVGALLLLL 25 (44)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 344444443
No 9
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=11.84 E-value=1.1e+02 Score=17.71 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=8.4
Q ss_pred HHHHHHhHHHHHHHhhh
Q 033248 94 LLSIVAGGVVLAAIVGA 110 (123)
Q Consensus 94 L~SLvaGgvVv~~i~~A 110 (123)
+-.++.|.++.+++.++
T Consensus 13 IAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHH
Confidence 34556665554443333
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.72 E-value=1.3e+02 Score=19.19 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHhhheeeeeccCcccCC
Q 033248 94 LLSIVAGGVVLAAIVGAVIGVANFDPVKRT 123 (123)
Q Consensus 94 L~SLvaGgvVv~~i~~Ali~VSq~D~V~R~ 123 (123)
+.|++.|-+++..|+.++.=+.=|++-++.
T Consensus 13 i~svl~GLLLL~Lii~~LwK~GFFKR~~~~ 42 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALWKIGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccCCCcc
Done!