Query 033248
Match_columns 123
No_of_seqs 91 out of 93
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 19:16:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033248.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033248hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nvpc_ b.56.1.1 (C:) Large ch 27.0 4.8 0.00035 24.0 -0.5 12 112-123 5-16 (47)
2 d1nh2c_ b.56.1.1 (C:) Large ch 17.5 9.8 0.00072 23.4 -0.5 12 112-123 16-27 (59)
3 d1ztda1 a.149.1.2 (A:2-125) Hy 14.3 36 0.0026 23.4 1.7 14 87-100 10-23 (124)
4 d2vv5a3 f.34.1.1 (A:27-112) Me 11.0 1.3E+02 0.0093 17.3 3.4 25 85-109 34-58 (86)
5 d1sgma2 a.121.1.1 (A:78-188) P 10.2 96 0.007 17.8 2.6 19 88-106 73-91 (111)
6 d1nni1_ c.23.5.4 (1:) Azobenze 9.1 57 0.0041 20.5 1.2 13 84-96 76-88 (171)
7 d1rtta_ c.23.5.4 (A:) Hypothet 7.5 49 0.0036 21.5 0.4 13 84-96 79-91 (174)
8 d2p6ra1 a.4.5.43 (A:404-488) H 7.4 60 0.0043 19.2 0.7 17 87-103 9-25 (85)
9 d2g7sa2 a.121.1.1 (A:77-192) P 7.2 1.5E+02 0.011 17.1 2.6 17 89-105 78-94 (116)
10 d1ppjw_ f.23.14.1 (W:) Subunit 6.2 80 0.0059 19.1 0.9 13 86-98 1-13 (62)
No 1
>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.00 E-value=4.8 Score=24.00 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=10.0
Q ss_pred eeeeccCcccCC
Q 033248 112 IGVANFDPVKRT 123 (123)
Q Consensus 112 i~VSq~D~V~R~ 123 (123)
+.+.|+|+|.|+
T Consensus 5 ~vlc~ydKV~R~ 16 (47)
T d1nvpc_ 5 VVVCQYDKIHRS 16 (47)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEEee
Confidence 568999999984
No 2
>d1nh2c_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.52 E-value=9.8 Score=23.45 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=9.8
Q ss_pred eeeeccCcccCC
Q 033248 112 IGVANFDPVKRT 123 (123)
Q Consensus 112 i~VSq~D~V~R~ 123 (123)
+.+.|+|+|.|.
T Consensus 16 ~vlc~yDKV~R~ 27 (59)
T d1nh2c_ 16 LMLCLYDKVTRT 27 (59)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEeec
Confidence 568899999884
No 3
>d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]}
Probab=14.26 E-value=36 Score=23.39 Aligned_cols=14 Identities=43% Similarity=0.510 Sum_probs=11.4
Q ss_pred ChhHHHHHHHHHHh
Q 033248 87 SPSLKNFLLSIVAG 100 (123)
Q Consensus 87 TPSL~NFL~SLvaG 100 (123)
-.||-||++|+..-
T Consensus 10 GDSLiNfl~SlALt 23 (124)
T d1ztda1 10 GDSLINFLYSLALT 23 (124)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 36999999999764
No 4
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=10.96 E-value=1.3e+02 Score=17.28 Aligned_cols=25 Identities=16% Similarity=0.474 Sum_probs=19.3
Q ss_pred CCChhHHHHHHHHHHhHHHHHHHhh
Q 033248 85 GLSPSLKNFLLSIVAGGVVLAAIVG 109 (123)
Q Consensus 85 ~mTPSL~NFL~SLvaGgvVv~~i~~ 109 (123)
.+++++.+|+..++--.+.+..+..
T Consensus 34 ~~~~~~~~~i~~~~~~~i~~i~~~~ 58 (86)
T d2vv5a3 34 KIDATVADFLSALVRYGIIAFTLIA 58 (86)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999998877776665433
No 5
>d1sgma2 a.121.1.1 (A:78-188) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=10.23 E-value=96 Score=17.77 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHhHHHHHH
Q 033248 88 PSLKNFLLSIVAGGVVLAA 106 (123)
Q Consensus 88 PSL~NFL~SLvaGgvVv~~ 106 (123)
..|+.|+++++-|+.+..=
T Consensus 73 ~~lA~~l~~~~~Ga~~~ar 91 (111)
T d1sgma2 73 NQLGTLINSMIEGGIMLSL 91 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3589999999999998763
No 6
>d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]}
Probab=9.05 E-value=57 Score=20.53 Aligned_cols=13 Identities=54% Similarity=0.493 Sum_probs=10.8
Q ss_pred CCCChhHHHHHHH
Q 033248 84 SGLSPSLKNFLLS 96 (123)
Q Consensus 84 ~~mTPSL~NFL~S 96 (123)
.++++.|||||=-
T Consensus 76 ~~~~~~lKn~iD~ 88 (171)
T d1nni1_ 76 SGMSGALKNALDF 88 (171)
T ss_dssp TBCCHHHHHHHHH
T ss_pred cccchhHhHHHHH
Confidence 4699999999863
No 7
>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.47 E-value=49 Score=21.48 Aligned_cols=13 Identities=23% Similarity=0.105 Sum_probs=10.7
Q ss_pred CCCChhHHHHHHH
Q 033248 84 SGLSPSLKNFLLS 96 (123)
Q Consensus 84 ~~mTPSL~NFL~S 96 (123)
.+|++.|||||==
T Consensus 79 ~s~~~~lKn~iD~ 91 (174)
T d1rtta_ 79 YSMAGVLKNAIDW 91 (174)
T ss_dssp TEECHHHHHHHHH
T ss_pred ccccHHHHHHHHH
Confidence 4699999999953
No 8
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.35 E-value=60 Score=19.22 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.6
Q ss_pred ChhHHHHHHHHHHhHHH
Q 033248 87 SPSLKNFLLSIVAGGVV 103 (123)
Q Consensus 87 TPSL~NFL~SLvaGgvV 103 (123)
.++|.+.+++.++.|.|
T Consensus 9 ~~~L~~hllaeIasg~i 25 (85)
T d2p6ra1 9 ETHLRFHSLSIICDGYA 25 (85)
T ss_dssp HHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHcCCC
Confidence 35899999999887754
No 9
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.21 E-value=1.5e+02 Score=17.10 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHhHHHHH
Q 033248 89 SLKNFLLSIVAGGVVLA 105 (123)
Q Consensus 89 SL~NFL~SLvaGgvVv~ 105 (123)
.|..++++.+-|++++.
T Consensus 78 ~lA~~l~~~~~G~~~~a 94 (116)
T d2g7sa2 78 ANAEIFMATVHGAMLSA 94 (116)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 38999999999999875
No 10
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.25 E-value=80 Score=19.06 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=7.9
Q ss_pred CChhHHHHHHHHH
Q 033248 86 LSPSLKNFLLSIV 98 (123)
Q Consensus 86 mTPSL~NFL~SLv 98 (123)
+.|||.+-|+.++
T Consensus 1 ~~psl~~~lYn~l 13 (62)
T d1ppjw_ 1 VAPTLTARLYSLL 13 (62)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CcccHHHHHHHHH
Confidence 3577776666554
Done!