BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033251
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 169 bits (427), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 94/110 (85%)
Query: 2 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIF 61
+EEGQVI+CHTVE+WNEQLQK +K L+VVDFTASWC PC+ ++P ++LAKKLP V+F
Sbjct: 13 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLF 72
Query: 62 LKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
LKVD DELKSVA +WA++AMPTF+ KEGK+L+++VGAKKDELQ + KH
Sbjct: 73 LKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 122
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 162 bits (411), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 91/110 (82%)
Query: 2 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIF 61
AEEGQVI+CHTV++W E +KG ++KLIVVDFTASWCPPCK+++PI +ELAKK P V F
Sbjct: 1 AEEGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTF 60
Query: 62 LKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
LKVDVDELK+VAEEW VEAMPTF+ K+GK++++ VGA KD L V KH
Sbjct: 61 LKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKH 110
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 83/106 (78%)
Query: 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVD 65
+VIS H++E W Q+++ AKKL+V+DFTASWC PC++M+P+ ++LAKK P +FLKVD
Sbjct: 13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVD 72
Query: 66 VDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
VDELK +AE+++VEAMPTF+ KEG V +R+VGA K+EL V H
Sbjct: 73 VDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLH 118
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 132 bits (331), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 82/106 (77%)
Query: 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVD 65
+VIS H++E W Q+++ AKKL+V+DFTASWC P ++M+P+ ++LAKK P +FLKVD
Sbjct: 16 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVD 75
Query: 66 VDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
VDELK +AE+++VEAMPTF+ KEG V +R+VGA K+EL V H
Sbjct: 76 VDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLH 121
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 132 bits (331), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 79/107 (73%)
Query: 2 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIF 61
AEEG VI+CHT + ++ + G KL+++DFTASWC PC++++P+ +E AKK P IF
Sbjct: 3 AEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIF 62
Query: 62 LKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 108
LKVDVDELK VAE + VEAMPTF+ K+G+ ++ +VG +KD++ +
Sbjct: 63 LKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKI 109
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 79/105 (75%)
Query: 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV 66
VI+CH + ++ Q+ K A K++++DFTASWC PC+ ++P+ +E AKK P +FLKVDV
Sbjct: 16 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDV 75
Query: 67 DELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
DELK VAE++ VEAMPTF+ K+G +++VGA+KD+LQ + KH
Sbjct: 76 DELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 120
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 67/98 (68%), Gaps = 2/98 (2%)
Query: 14 ESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVA 73
E + +QL + A KL+V+DF A+WC PCK+++P L EL++ + V+FLKVDVDE + +A
Sbjct: 9 EDFTKQLNE--AGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIA 66
Query: 74 EEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
++ + MPTF+ K G+ L+ + GA D+L VEK+
Sbjct: 67 QDNQIACMPTFLFMKNGQKLDSLSGANYDKLLELVEKN 104
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 64/101 (63%)
Query: 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKV 64
G V T E W+++L + K+++ +F+A WC PCK ++P EL++ P+++FL +
Sbjct: 24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVI 83
Query: 65 DVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQ 105
DVDEL + W ++A PTF ++G+ ++++VGA K EL
Sbjct: 84 DVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELH 124
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 59/84 (70%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLT 87
+LIVVDF A WC PC+ ++P + LAK++P V F KVDVD+ + A +++V AMPTFV
Sbjct: 20 RLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFI 79
Query: 88 KEGKVLERIVGAKKDELQLAVEKH 111
K+GK ++R GA + +L+ + +H
Sbjct: 80 KDGKEVDRFSGANETKLRETITRH 103
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 10/109 (9%)
Query: 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA---VIFL 62
QVIS + +Q ++ K++V+DF A+WC PCK++ P+ +++ PA V F
Sbjct: 18 QVISSY------DQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISD-TPAGDKVGFY 70
Query: 63 KVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
KVDVDE +A+E + AMPTFV K G+ ++ +VGA +LQ A+ +H
Sbjct: 71 KVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQH 119
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 63/101 (62%)
Query: 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKV 64
G V T E W+++L + K+++ +F+A WC P + ++P EL++ P+++FL +
Sbjct: 24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVI 83
Query: 65 DVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQ 105
DVDEL + W ++A PTF ++G+ ++++VGA K EL
Sbjct: 84 DVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELH 124
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 57/85 (67%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+WC PCK++ P L++K VIFL+VDVD+ + VA E V++MPTF
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTF 77
Query: 85 VLTKEGKVLERIVGAKKDELQLAVE 109
K+G+ + GA K++L+ +
Sbjct: 78 QFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 57/85 (67%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+WC PCK++ P L++K VIFL+VDVD+ + VA E V++MPTF
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTF 77
Query: 85 VLTKEGKVLERIVGAKKDELQLAVE 109
K+G+ + GA K++L+ +
Sbjct: 78 QFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 61/93 (65%)
Query: 19 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAV 78
+ IA KL+VVDF A+WC PCK+++P++ + +++ P F K+DVDEL VA++ V
Sbjct: 10 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEV 69
Query: 79 EAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
AMPT +L K GK + ++VGA ++ A+ +
Sbjct: 70 SAMPTLLLFKNGKEVAKVVGANPAAIKQAIAAN 102
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 61/93 (65%)
Query: 19 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAV 78
+ IA KL+VVDF A+WC PCK+++P++ + +++ P F K+DVDEL VA++ V
Sbjct: 16 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEV 75
Query: 79 EAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
AMPT +L K GK + ++VGA ++ A+ +
Sbjct: 76 SAMPTLLLFKNGKEVAKVVGANPAAIKQAIAAN 108
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 57/86 (66%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+WC PCK++ P L++K VIFL+VDVD+ + VA E V+ MPTF
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTF 77
Query: 85 VLTKEGKVLERIVGAKKDELQLAVEK 110
K+G+ + GA K++L+ + +
Sbjct: 78 QFFKKGQKVGEFSGANKEKLEATINE 103
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+WC PCK++ P L++K VIFL+VDVD+ + VA E V+ MPTF
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTF 77
Query: 85 VLTKEGKVLERIVGAKKDELQLAVE 109
K+G+ + GA K++L+ +
Sbjct: 78 QFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+WC PCK++ P L++K VIFL+VDVD+ + VA E V+A PTF
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTF 77
Query: 85 VLTKEGKVLERIVGAKKDELQLAVE 109
K+G+ + GA K++L+ +
Sbjct: 78 QFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 56/80 (70%)
Query: 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89
+V+DF A+WC PCK+M P L++L + P V F+K DVDE +A+E V AMPTFVL K+
Sbjct: 33 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKD 92
Query: 90 GKVLERIVGAKKDELQLAVE 109
G+++ +I+GA L+ ++
Sbjct: 93 GQLIGKIIGANPTALEKGIK 112
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+WC PCK++ P L++K VIFL+VDV++ + VA E V+ MPTF
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQDVASECEVKCMPTF 77
Query: 85 VLTKEGKVLERIVGAKKDELQLAVE 109
K+G+ + GA K++L+ +
Sbjct: 78 QFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+WC PCK++ P L++K VIFL+VDVD+ + VA E V+ PTF
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCTPTF 77
Query: 85 VLTKEGKVLERIVGAKKDELQLAVE 109
K+G+ + GA K++L+ +
Sbjct: 78 QFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+WC P K++ P L++K VIFL+VDVD+ + VA E V++MPTF
Sbjct: 29 AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTF 88
Query: 85 VLTKEGKVLERIVGAKKDELQLAVE 109
K+G+ + GA K++L+ +
Sbjct: 89 QFFKKGQKVGEFSGANKEKLEATIN 113
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+WC P K++ P L++K VIFL+VDVD+ + VA E V++MPTF
Sbjct: 18 AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDSQDVASESEVKSMPTF 77
Query: 85 VLTKEGKVLERIVGAKKDELQLAVE 109
K+G+ + GA K++L+ +
Sbjct: 78 QFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 60/93 (64%)
Query: 19 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAV 78
+ IA KL+VVDF A+WC P K+++P++ + +++ P F K+DVDEL VA++ V
Sbjct: 16 EFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEV 75
Query: 79 EAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
AMPT +L K GK + ++VGA ++ A+ +
Sbjct: 76 SAMPTLLLFKNGKEVAKVVGANPAAIKQAIAAN 108
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLK 63
G VI + +W+ QL KG K IVVDFTA+WC PCK+++P+ L+ VIFLK
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61
Query: 64 VDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
VDVD + +VAE + AMPTF + K+G + +VGA +D+L+ V KH
Sbjct: 62 VDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKH 109
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+WC P K++ P L++K VIFL+VDVD+ + VA E V+ MPTF
Sbjct: 18 AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKRMPTF 77
Query: 85 VLTKEGKVLERIVGAKKDELQLAVE 109
K+G+ + GA K++L+ +
Sbjct: 78 QFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+WC P K++ P L++K VIFL+VDVD+ + VA E V+A PTF
Sbjct: 18 AGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTF 77
Query: 85 VLTKEGKVLERIVGAKKDELQLAVE 109
K+G+ + GA K++L+ +
Sbjct: 78 QFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV 66
V + ++ L G KL+VVDF A+WC PCK+++P++ + A++ F K+DV
Sbjct: 9 VTQLKSASEYDSALASG---DKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDV 65
Query: 67 DELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
DE+ VA++ V +MPT + K GK + R+VGA ++ A+ +
Sbjct: 66 DEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASN 110
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+WC PCK++ P L++K VIFL+VDVD+ + VA ++ + +PT
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTL 77
Query: 85 VLTKEGKVLERIVGA 99
+L K G+V VGA
Sbjct: 78 LLFKNGEVAATKVGA 92
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV 66
V + ++ L G KL+VVDF A+WC PCK+++P++ + A++ F K+DV
Sbjct: 2 VTQLKSASEYDSALASG---DKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDV 58
Query: 67 DELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
DE+ VA++ V +MPT + K GK + R+VGA ++ A+ +
Sbjct: 59 DEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASN 103
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83
I+ +L++VDF A WC PCK ++P E +K ++F+KVDVDE+ V E+ + +MPT
Sbjct: 23 ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPT 82
Query: 84 FVLTKEGKVLERIVGAKKDELQLAVEKH 111
F + K G ++ ++GA L+ +EK+
Sbjct: 83 FKVYKNGSSVDTLLGANDSALKQLIEKY 110
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 27 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVL 86
KL+VVDF A+WC PCK ++P+ EL++K A IF+KVDVD+L+ A ++ + AMPTF+
Sbjct: 24 NKLVVVDFFATWCGPCKTIAPLFKELSEKYDA-IFVKVDVDKLEETARKYNISAMPTFIA 82
Query: 87 TKEGKVLERIVGA 99
K G+ + +VGA
Sbjct: 83 IKNGEKVGDVVGA 95
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 19 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWA 77
QL K A+ KL+V+DF A+WC PCK++SP L EL+ + V+ LKVDVDE + +A E+
Sbjct: 19 QLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYN 76
Query: 78 VEAMPTFVLTKEGKVLERIVGAKKDELQ 105
+ +MPTFV K G +E GA L+
Sbjct: 77 ISSMPTFVFLKNGVKVEEFAGANAKRLE 104
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 60/94 (63%), Gaps = 3/94 (3%)
Query: 19 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWA 77
QL K A+ KL+V+DF A+WC PCK++SP L EL+ + V+ LKVDVDE + +A E+
Sbjct: 14 QLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYN 71
Query: 78 VEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
+ +MPTFV K G +E GA L+ ++ +
Sbjct: 72 ISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKAN 105
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 27 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVL 86
KL+VVDF A+WC PCK ++P+ EL++K A IF+KVDVD+L+ A ++ + AMPTF+
Sbjct: 33 NKLVVVDFFATWCGPCKTIAPLFKELSEKYDA-IFVKVDVDKLEETARKYNISAMPTFIA 91
Query: 87 TKEGKVLERIVGA 99
K G+ + +VGA
Sbjct: 92 IKNGEKVGDVVGA 104
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLK 63
G VI + +W+ QL KG K IVV FTA+WC PCK+++P+ L+ VIFLK
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61
Query: 64 VDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
VDVD + +VAE + AMPTF + K+G + +VGA +D+L+ V KH
Sbjct: 62 VDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKH 109
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+W P K++ P L++K VIFL+VDVD+ + VA E V+ MPTF
Sbjct: 18 AGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTF 77
Query: 85 VLTKEGKVLERIVGAKKDELQLAVE 109
K+G+ + GA K++L+ +
Sbjct: 78 QFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV 66
V + ++ L G KL+VVDF A+WC P K+++P++ + A++ F K+DV
Sbjct: 10 VTQLKSASEYDSALASG---DKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDV 66
Query: 67 DELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
DE+ VA++ V +MPT + K GK + R+VGA ++ A+ +
Sbjct: 67 DEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASN 111
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV 66
V + ++ L G KL+VVDF A+WC P K+++P++ + A++ F K+DV
Sbjct: 2 VTQLKSASEYDSALASG---DKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDV 58
Query: 67 DELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 111
DE+ VA++ V +MPT + K GK + R+VGA ++ A+ +
Sbjct: 59 DEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASN 103
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFL-KVDVDELKS 71
+E ++ + + L++VDF A WC PC+ ++PIL E+AK+ + + K+DVDE
Sbjct: 5 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 64
Query: 72 VAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 111
A + V ++PT +L K+G+ +E +VGA+ K Q +EKH
Sbjct: 65 TAXRYRVXSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKH 105
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFL-KVDVDELKS 71
+E ++ + + L++VDF A WC PC+ ++PIL E+AK+ + + K+DVDE
Sbjct: 4 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 63
Query: 72 VAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 111
A + V ++PT +L K+G+ +E +VGA+ K Q +EKH
Sbjct: 64 TAXRYRVXSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKH 104
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83
+ AK L+VV F A W P C M+ +++ELAK+LP V F+K++ + + V+E++ + ++PT
Sbjct: 35 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPT 94
Query: 84 FVLTKEGKVLERIVGAKKDELQLAVEKH 111
F+ K + ++R+ GA EL V++H
Sbjct: 95 FLFFKNSQKIDRLDGAHAPELTKKVQRH 122
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 58/88 (65%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83
+ AK L+VV F A W P C M+ +++ELAK+LP V F+K++ + + V+E++ + ++PT
Sbjct: 29 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPT 88
Query: 84 FVLTKEGKVLERIVGAKKDELQLAVEKH 111
F+ K + ++R+ GA EL V++H
Sbjct: 89 FLFFKNSQKIDRLDGAHAPELTKKVQRH 116
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A KL+VVDF+A+WC PCK++ P L++K VIFL+VDVD+ + VA E V+ MPTF
Sbjct: 18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQDVASEXEVKCMPTF 77
Query: 85 VLTKEGKVLERIVGAKKDELQLAVE 109
K+G+ + GA K++L+ +
Sbjct: 78 QFFKKGQKVGEFSGANKEKLEATIN 102
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 17 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEW 76
++ +A+ ++ VVDF A WC PC +++PI+ ELA+ P V F K++ DE +A +
Sbjct: 6 SKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARY 65
Query: 77 AVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEK 110
V ++PT + K+G+ ++ I+GA ++E+++ ++
Sbjct: 66 GVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKN 100
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 54/83 (65%)
Query: 17 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEW 76
++ + I K++VVDF A WC PC +++P++ ELA P V F K++ +E + +A +
Sbjct: 13 SKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRY 72
Query: 77 AVEAMPTFVLTKEGKVLERIVGA 99
+ ++PT + K G+++++I+GA
Sbjct: 73 GIMSLPTIMFFKNGELVDQILGA 95
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 30 IVVDFTASWCPPCKLMSPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTK 88
+VVDF A WC PCK++ P L ++ AK+ V+ KVD+D+ +A E+ V A+PT + K
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 89 EGKVLERIVGAKKDELQL 106
G V+++ VG KDE QL
Sbjct: 94 NGDVVDKFVGI-KDEDQL 110
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPT 83
A K +V+D WC PCK M+P +LA++ VIFLK+D + E K++A+E + +PT
Sbjct: 35 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 94
Query: 84 FVLTKEGKVLERIVGAKKDELQLAVE 109
F + KE V+ + GAK D+L A++
Sbjct: 95 FKILKENSVVGEVTGAKYDKLLEAIQ 120
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 66/93 (70%), Gaps = 2/93 (2%)
Query: 21 QKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVE 79
Q+ + + K ++VDF A WC PC++++PI+ ELAK+ V +KV+VDE + A ++ +
Sbjct: 13 QEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIR 72
Query: 80 AMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 111
++PT +L K G+V++R+VGA+ K+ L+ ++KH
Sbjct: 73 SIPTLLLFKNGQVVDRLVGAQPKEALKERIDKH 105
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPT 83
A K +V+D WC PCK M+P +LA++ VIFLK+D + E K++A+E + +PT
Sbjct: 23 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 82
Query: 84 FVLTKEGKVLERIVGAKKDELQLAVE 109
F + KE V+ + GAK D+L A++
Sbjct: 83 FKILKENSVVGEVTGAKYDKLLEAIQ 108
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 66/102 (64%), Gaps = 7/102 (6%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVI-FLKVDVDELK 70
T +S++ + +G+ ++ DF A WC PCK+++P+L EL +++ + +K+DVDE +
Sbjct: 7 TDQSFSAETSEGV-----VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQ 61
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 111
A ++ V ++PT ++ K+G+V+E VG K K+ LQ V KH
Sbjct: 62 ETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMP 82
+++ K ++VDF A+WC PCK+++P+L E+A ++ + K+DVD A + V ++P
Sbjct: 27 LSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIP 86
Query: 83 TFVLTKEGKVLERIVGAK 100
T +L K+G+ ++RIVGAK
Sbjct: 87 TLILFKDGQPVKRIVGAK 104
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMP 82
+++ K ++VDF A+WC PCK+++P+L E+A ++ + K+DVD A + V ++P
Sbjct: 22 LSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIP 81
Query: 83 TFVLTKEGKVLERIVGAK 100
T +L K+G+ ++RIVGAK
Sbjct: 82 TLILFKDGQPVKRIVGAK 99
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 31 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89
+VDF A+WC PCK+++P+L ELA LK+DVDE S A ++ V ++PT ++ K+
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 90 GKVLERIVGAK-KDELQLAVEKH 111
G+ ++++VG + K+ L ++KH
Sbjct: 84 GQPVDKVVGFQPKENLAEVLDKH 106
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT-F 84
A L++VDF A+WC PC+ + IL +A+ V F+KVDVD+ + A+ + V ++P F
Sbjct: 22 APGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALF 81
Query: 85 VLTKEG---KVLERIVGAKKDELQLAVEK 110
+ KEG K L++ VGA ++ +EK
Sbjct: 82 FVKKEGNEIKTLDQFVGADVSRIKADIEK 110
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 21 QKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVE 79
Q + A L++VDF A WC PCK++ P L E+ K+ V KV++D+ + V
Sbjct: 14 QDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVR 73
Query: 80 AMPTFVLTKEGKVLERIVGA-KKDELQLAVE 109
++PT +L ++GKV+++ VGA K +L+ VE
Sbjct: 74 SIPTLMLVRDGKVIDKKVGALPKSQLKAWVE 104
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 5 GQVISCHT--------VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL 56
GQV C VE+ + + +A L +VDF A WC PC+L+SPIL ELA+
Sbjct: 20 GQVPVCGACKTPLPWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDH 79
Query: 57 PAVI-FLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDEL 104
+ +KV+VDE +A + V ++PT VL + G + VGA +
Sbjct: 80 AGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRV 128
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVI-FLKVDVDELKSVAEEWAVEAMPTFVLTK 88
++VDF A WC PCKL++P++ ELAK+ I K++ DE +A ++ + ++PT + K
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 79
Query: 89 EGKVLERIVGA-KKDELQLAVEKH 111
G+ E I+GA K L ++EK+
Sbjct: 80 NGERKESIIGAVPKSTLTDSIEKY 103
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVI-FLKVDVDELKSVAEEWAVEAMPTFVLTK 88
++VDF A WC PCKL++P++ ELAK+ I K++ DE +A ++ + ++PT + K
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 89 EGKVLERIVGA-KKDELQLAVEKH 111
G+ E I+GA K L ++EK+
Sbjct: 81 NGERKESIIGAVPKSTLTDSIEKY 104
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 17 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAK-KLPAVIFLKVDVDELKSVAEE 75
+ Q+ I K ++VDF A+WC PC++M+P+L E A+ V K++VDE +
Sbjct: 7 DANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQ 66
Query: 76 WAVEAMPTFVLTKEGKVLERIVGAKKDE 103
+ + ++PT +L K G+ +++++G + E
Sbjct: 67 FGIMSIPTLILFKGGRPVKQLIGYQPKE 94
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 65/102 (63%), Gaps = 7/102 (6%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVI-FLKVDVDELK 70
T +S++ + +G+ ++ DF A WC P K+++P+L EL +++ + +K+DVDE +
Sbjct: 7 TDQSFSAETSEGV-----VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQ 61
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 111
A ++ V ++PT ++ K+G+V+E VG K K+ LQ V KH
Sbjct: 62 ETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 18 EQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEW 76
E + I KL++VD A WC PC L PI ++A+K +F +++VDE + +A+++
Sbjct: 12 ENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKY 71
Query: 77 AVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKH 111
+V +PT ++ G++++ +VGA +D L+ V K+
Sbjct: 72 SVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKY 107
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 2 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIF 61
A V+ ++VE + + + I L V FTA WC PCK + + ++A + P V F
Sbjct: 16 ARYPSVVDVYSVEQFRNIMSEDI----LTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKF 71
Query: 62 LKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQ 105
KVD D + + V +PTF++ + GK+L ++GA L+
Sbjct: 72 AKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLR 115
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPT 83
A K +V+D WC P K M+P +LA++ VIFLK+D + E K++A+E + +PT
Sbjct: 22 AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPT 81
Query: 84 FVLTKEGKVLERIVGAKKDELQLAVE 109
F + KE V+ + GAK D+L A++
Sbjct: 82 FKILKENSVVGEVTGAKYDKLLEAIQ 107
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 17 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAK-KLPAVIFLKVDVDELKSVAEE 75
+ Q+ I K ++VDF A+WC PC++M+P+L E A+ V K++VDE +
Sbjct: 7 DANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQ 66
Query: 76 WAVEAMPTFVLTKEGKVLERIVGAKKDE 103
+ + ++PT +L K G+ +++++G + E
Sbjct: 67 FGIMSIPTLILFKGGEPVKQLIGYQPKE 94
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 31 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89
+VDF A+WC CK+++P+L ELA LK+DVDE S A ++ V ++PT ++ K+
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 90 GKVLERIVGAK-KDELQLAVEKH 111
G+ ++++VG + K+ L ++KH
Sbjct: 83 GQPVDKVVGFQPKENLAEVLDKH 105
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMP 82
+++ K ++VDF A+WC P K+++P+L E+A ++ + K+DVD A + V ++P
Sbjct: 24 LSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIP 83
Query: 83 TFVLTKEGKVLERIVGAK 100
T +L K+G+ ++RIVGAK
Sbjct: 84 TLILFKDGQPVKRIVGAK 101
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 31 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89
+VDF A+WC CK+++P+L ELA LK+DVDE S A ++ V ++PT ++ K+
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 90 GKVLERIVGAK-KDELQLAVEKH 111
G+ ++++VG + K+ L ++KH
Sbjct: 84 GQPVDKVVGFQPKENLAEVLDKH 106
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 17 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAK-KLPAVIFLKVDVDELKSVAEE 75
+ Q+ I ++VDF A+WC PC++M+P+L E A+ V K++VDE +
Sbjct: 7 DANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQ 66
Query: 76 WAVEAMPTFVLTKEGKVLERIVGAKKDE 103
+ + ++PT +L K G+ +++++G + E
Sbjct: 67 FGIMSIPTLILFKGGRPVKQLIGYQPKE 94
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVI-FLKVDVDELKSVAEEWAVEAMPTFVLTK 88
++VDF A WC P KL++P++ ELAK+ I K++ DE +A ++ + ++PT + K
Sbjct: 21 VMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 89 EGKVLERIVGA-KKDELQLAVEKH 111
G+ E I+GA K L ++EK+
Sbjct: 81 NGERKESIIGAVPKSTLTDSIEKY 104
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 17 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAK-KLPAVIFLKVDVDELKSVAEE 75
+ Q+ I ++VDF A+WC PC++M+P+L E A+ V K++VDE +
Sbjct: 7 DANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQ 66
Query: 76 WAVEAMPTFVLTKEGKVLERIVGAKKDE 103
+ + ++PT +L K G+ +++++G + E
Sbjct: 67 FGIMSIPTLILFKGGEPVKQLIGYQPKE 94
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 63/102 (61%), Gaps = 7/102 (6%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T ++ +++ G+ +VDF A+ C PCK+++P+L ELA LK+DVDE
Sbjct: 9 TDADFDSKVESGVQ-----LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 111
S A ++ V ++PT ++ K+G+ ++++VG + K+ L ++KH
Sbjct: 64 STAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 105
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
Length = 108
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T ES++ + K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 8 TDESFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 64/101 (63%), Gaps = 7/101 (6%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVI-FLKVDVDELK 70
T +S++ + +G+ ++ DF A WC P K+++P+L EL +++ + +K+DVDE +
Sbjct: 7 TDQSFSAETSEGV-----VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQ 61
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEK 110
A ++ V ++PT ++ K+G+V+E VG K K+ LQ V K
Sbjct: 62 ETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNK 102
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMP 82
+ A I+VDF A WC PCK+++PIL E+A + + K+++D+ A ++ + +P
Sbjct: 27 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 86
Query: 83 TFVLTKEGKVLERIVGA 99
T +L K G+V VGA
Sbjct: 87 TLLLFKNGEVAATKVGA 103
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
Length = 108
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL E+A++ + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVI-FLKVDVDELKSVAEEWAVEAMPTFVLTK 88
++VDF A WC PC++++P++ E+A + + +K++ DE +VA E+ + ++PT ++ K
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81
Query: 89 EGKVLERIVGA-KKDELQLAVEKH 111
GK E I+GA K + VEK+
Sbjct: 82 GGKKCETIIGAVPKATIVQTVEKY 105
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + ++PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRSIPTLLLFKNGEVAATKVGA 93
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
Length = 108
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGDVAATKVGA 93
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
Length = 108
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL E+A + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20
Structures
Length = 108
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
Length = 108
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMP 82
+ A I+VDF A WC PCK+++PIL E+A + + K+++D+ A ++ + +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 83 TFVLTKEGKVLERIVGA 99
T +L K G+V VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMP 82
+ A I+VDF A WC PCK+++PIL E+A + + K+++D+ A ++ + +P
Sbjct: 17 LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 83 TFVLTKEGKVLERIVGA 99
T +L K G+V VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 9 TDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 65
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + PT +L K G+V VGA
Sbjct: 66 GTAPKYGIRGTPTLLLFKNGEVAATKVGA 94
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 31 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89
+VDF A+WC K+++P+L ELA LK+DVDE S A ++ V ++PT ++ K+
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 90 GKVLERIVGAK-KDELQLAVEKH 111
G+ ++++VG + K+ L ++KH
Sbjct: 84 GQPVDKVVGFQPKENLAEVLDKH 106
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
Length = 108
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
A +L VV FT C PC ++P S ++ K P +FL+VDV + + A + A PTF
Sbjct: 19 AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTF 78
Query: 85 VLTKEGKVLERIVGAKKDELQLAVEKH 111
+ +++ GA L+ +++H
Sbjct: 79 QFFRNKVRIDQYQGADAVGLEEKIKQH 105
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
Length = 108
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL ++A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAACKVGA 93
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PC++++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ L K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDLVKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ +PT +L K G+V VGA
Sbjct: 65 GTAPKYIERGIPTLLLFKNGEVAATKVGA 93
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC PCKL++ IL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFL-KVDVDELKSVAEEWAVEAMPT 83
K +VDF A WC PCK+++PIL EL+K+ I++ KV+VD+ +A ++ ++ +PT
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPT 108
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFL-KVDVDELKSVAEEWAVEAMPT 83
K +VDF A WC PCK+++PIL EL+K+ I++ KV+VD+ +A ++ ++++PT
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPT 108
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC P K+++PIL E+A + + K+++D+
Sbjct: 28 TDDSFDTDVLK---ADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNP 84
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 85 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 113
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC CK+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 4 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSEL-AKKLPAVIFL 62
+G+VI+ T E+ ++ LQ + V+DF A WC PC+ +PI +E A++ V F+
Sbjct: 37 DGEVIN-ATAETLDKLLQDDLPX----VIDFWAPWCGPCRSFAPIFAETAAERAGKVRFV 91
Query: 63 KVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
KV+ + +++ + + ++PT L + GK ++ + GA
Sbjct: 92 KVNTEAEPALSTRFRIRSIPTIXLYRNGKXIDXLNGA 128
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC P K+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli
Thioredoxin With An Arginine Insertion In The Active
Site
Length = 109
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCP-PCKLMSPILSELAKKLPA-VIFLKVDVDEL 69
T +S++ + K A I+VDF A WC PCK+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQN 64
Query: 70 KSVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 PGTAPKYGIRGIPTLLLFKNGEVAATKVGA 94
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAKKLPAVI-FLKVDVDELKSVAEEWAVEAMPTFVL 86
K ++VDF A+WC PC+ ++P L +A + I +K+++DE A ++ V ++PT +
Sbjct: 24 KPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNV 83
Query: 87 TKEGKVLERIVGAK 100
+ G+V + IVGAK
Sbjct: 84 YQGGEVAKTIVGAK 97
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 20 LQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA---VIFLKVDVDELKSVAEEW 76
L A KLIV+ F SW PCK + + ++ + P+ V FL +D DE ++E +
Sbjct: 14 LTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNE-PSNSNVSFLSIDADENSEISELF 72
Query: 77 AVEAMPTFVLTKEGKVLERIVGAKKDE 103
+ A+P F++ +G +L+ + GA E
Sbjct: 73 EISAVPYFIIIHKGTILKELSGADPKE 99
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMP 82
+ A I+VDF A WC CK+++PIL E+A + + K+++D+ A ++ + +P
Sbjct: 17 LKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 76
Query: 83 TFVLTKEGKVLERIVGA 99
T +L K G+V VGA
Sbjct: 77 TLLLFKNGEVAATKVGA 93
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVIFL-KVDVDELKSVAEEWAVEAMPTFVLTK 88
++VDF A WC PC+ M+P A L + L K+D +VA ++ +P F+L
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFH 126
Query: 89 EGKVLERIVGAK 100
+G+ L R GA+
Sbjct: 127 KGRELARAAGAR 138
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTF 84
K +VDF A WC PCK+++PIL ELAK+ ++ KVD ++ + +A + + ++P+
Sbjct: 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSI 96
Query: 85 VLTK-EGK 91
+ EGK
Sbjct: 97 LFIPMEGK 104
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
Length = 108
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELK 70
T +S++ + K A I+VDF A WC K+++PIL E+A + + K+++D+
Sbjct: 8 TDDSFDTDVLKADGA---ILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
A ++ + +PT +L K G+V VGA
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 23 GIAAKK-LIVVDFTASWCPPCKLMSPILSELAKKLPAVIFL-KVDVDELKSVAEEWAVEA 80
G+ K +IV+ F A WC C + S + +L K I+L KVD+D+ +S+A +++V++
Sbjct: 37 GVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKS 96
Query: 81 MPTFVLTKEGKVLER 95
+PT +L K +L R
Sbjct: 97 LPTIILLKNKTMLAR 111
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 18/103 (17%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPP--------------CKLMSPILSELAKKLP 57
T +S++ + K A I+VDF A WC P CK+++PIL E+A +
Sbjct: 9 TDDSFDTDVLKADGA---ILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ 65
Query: 58 A-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
+ K+++D+ A ++ + +PT +L K G+V VGA
Sbjct: 66 GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 108
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 19 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA----VIFLKVDVDELKSVAE 74
+ +AA K ++V+F A WC CK ++P ++ A KL A + KVD E +A+
Sbjct: 16 NFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQ 75
Query: 75 EWAVEAMPTFVLTKEGKVL---ERIVGAKKDEL 104
++ V PT + G E G + D++
Sbjct: 76 QYGVRGYPTIKFFRNGDTASPKEYTAGREADDI 108
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVI-FLKVDVDELKSVAEEWAVEAMPTFVLTK 88
I++ FT SWC PCK M P E+A ++ I F +D ++ + E + +P+ L
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAELNIRTLPSLALFV 79
Query: 89 EGKVLERIVGA-KKDELQLAVEKH 111
+G + E G K +L+ + +
Sbjct: 80 DGMIREVFSGTMNKSDLRYWINNN 103
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK----LPAVI 60
G S TV + E A+ + + F A WC CK ++P EL+KK L V
Sbjct: 1 GSSGSSGTVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK 60
Query: 61 FLKVDVDELKSVAEEWAVEAMPTFVLTKEG-KVLERIVGAKKDELQLAV 108
+VD +++ +++V PT +L + G KV E G D L V
Sbjct: 61 IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 109
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 15 SWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL-PAVIFLKVDVDELKSVA 73
+W++Q++ +KK +VV F + CP CK P E AK+ + +F ++++ A
Sbjct: 15 TWSQQVED---SKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTA 71
Query: 74 EEWAVEAMPTFVLTKEGKVLERIVG---------AKKDELQLAVE 109
E++ V+ PTF G+ + VG A +D LQ E
Sbjct: 72 EKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDXLQHGEE 116
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVI-FLKVDVDELKSVAEEWAVEAMP 82
+ A++ ++V F ASWC PC+LMSP+++ A + +K+++D + +++ VE +P
Sbjct: 22 LKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVP 81
Query: 83 TFVLTKEGKVLERIVGA-KKDELQLAVEKH 111
L K ++L+ G KD+L ++ H
Sbjct: 82 ALRLVKGEQILDSTEGVISKDKLLSFLDTH 111
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK----LPAVI 60
G + T ++++ + +GI + F A WC CK ++P EL+KK L V
Sbjct: 4 GSTVLALTENNFDDTIAEGIT-----FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK 58
Query: 61 FLKVDVDELKSVAEEWAVEAMPTFVLTKEG-KVLERIVGAKKDELQLAV 108
+VD +++ +++V PT +L + G KV E G D L V
Sbjct: 59 IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 107
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK----LPAVIFLKVDVD 67
TV + E A+ + + F A WC CK ++P EL+KK L V +VD
Sbjct: 1 TVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 60
Query: 68 ELKSVAEEWAVEAMPTFVLTKEG-KVLERIVGAKKDELQLAV 108
+++ +++V PT +L + G KV E G D L V
Sbjct: 61 AERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 102
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 29 LIVVDFTASWCPPCKLMSP----ILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84
+I+V+F A WC CK ++P EL+K+ P + KVD E +A+ + V PT
Sbjct: 26 IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGYPTL 85
Query: 85 VLTKEGKVLE 94
+ ++G+ +
Sbjct: 86 KIFRKGRPFD 95
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 11/94 (11%)
Query: 15 SWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIF------LKVDVDE 68
S+ E L++ KL+ VD +WC PCK +S ++ L A F LK+D+++
Sbjct: 15 SFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVV--FKDSLVADYFNRHFVNLKMDMEK 72
Query: 69 LKSV--AEEWAVEAMPTFV-LTKEGKVLERIVGA 99
+ V +++ V A PT + + G+V+ R+VGA
Sbjct: 73 GEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGA 106
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced
Form
Length = 110
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEG 90
+V F + CP CK M +L + + P V VD + + +E E +PT V ++G
Sbjct: 23 IVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDG 82
Query: 91 KVLERIVG 98
KV + G
Sbjct: 83 KVAKVFSG 90
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 27 KKLIVVDFTASWCPPCKLMSPILSELAKKLPA---VIFLKVDVDELKSVAEEWAVEAMPT 83
KK ++++F A WC CK + PI + L KK ++ K+D +++ VE PT
Sbjct: 25 KKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPT 84
Query: 84 FVLTKEG 90
G
Sbjct: 85 IYFAPSG 91
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 23/94 (24%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAK----KLPAV------------------IFLKVD 65
K+ +V+ ASWC PC +P+L+EL K +L + F +V
Sbjct: 43 KVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVG 102
Query: 66 VDELKSVAEEWAVEAMP-TFVLTKEGKVLERIVG 98
VD + EW V +P TFV+ +EG ++ ++VG
Sbjct: 103 VDANGRASIEWGVYGVPETFVVGREGTIVYKLVG 136
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 18 EQLQKGIAAKKLIVVDFTASWCPPCKLMSP----ILSELAKKLPAVIFLKVDVDELKSVA 73
E + + +I+V+F A WC CK ++P EL+K+ P + KVD +A
Sbjct: 138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLA 197
Query: 74 EEWAVEAMPTFVLTKEGKVLE 94
+ + V PT + ++G+ +
Sbjct: 198 KRFDVSGYPTLKIFRKGRPYD 218
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 17 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSP----ILSELAKKLPAVIFLKVDVDELKSV 72
+ +A K ++++F A WC CK +P I + L K P + K+D +
Sbjct: 22 DANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVL 81
Query: 73 AEEWAVEAMPTFVLTKEGKVLE 94
A + V PT + K+G+ ++
Sbjct: 82 ASRFDVSGYPTIKILKKGQAVD 103
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 22/94 (23%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAKKLPA--VIFLKVDV------------------- 66
K+++V+F ASWCP C+ P L K P ++ L V+V
Sbjct: 42 KIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLS 101
Query: 67 DELKSVAEEWAVEAMP-TFVLTKEGKVLERIVGA 99
D V + + +P TF++ ++G + +R+ G
Sbjct: 102 DATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGG 135
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 30 IVVDFTASWCPPC-KLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT----F 84
IV+ F A WC PC K+ ++L V + +DVD + ++ ++A+PT F
Sbjct: 43 IVIKFGAVWCKPCNKIKEYFKNQL--NYYYVTLVDIDVDIHPKLNDQHNIKALPTFEFYF 100
Query: 85 VLTKEGKVLERIVGAKKDELQLAVEKH 111
L E ++ + GA +++++ A +K+
Sbjct: 101 NLNNEWVLVHTVEGANQNDIEKAFQKY 127
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSP---ILSELAKKLPAVIFLKVDVDE 68
T E+W E L+ +++F A WCP C+ + P +E + L V KVDV E
Sbjct: 13 TDENWRELLEGDW------MIEFYAPWCPACQNLQPEWESFAEWGEDL-EVNIAKVDVTE 65
Query: 69 LKSVAEEWAVEAMPTFVLTKEGKVLERIVG--AKKDELQLAVEK 110
++ + + A+PT K+G+ R G KKD + +K
Sbjct: 66 QPGLSGRFIINALPTIYHCKDGE-FRRYQGPRTKKDFINFISDK 108
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSP----ILSELAKKLPAVIFLKVDVDELKSVAEEWAVE 79
+A K ++++F A WC CK +P I S L P + K+D +A ++ V
Sbjct: 31 VADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVS 90
Query: 80 AMPTFVLTKEGKVLERIVGAKKDEL 104
PT + K+G+ ++ ++E+
Sbjct: 91 GYPTIKILKKGQAVDYDGSRTQEEI 115
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFL-KVDVDELKSVAEEWAVEAMPT 83
+ L++V+F A WC CK ++P A +L ++ L KVD + ++ V PT
Sbjct: 19 GSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPT 78
Query: 84 FVLTKEGK 91
+ ++G+
Sbjct: 79 LKIFRDGE 86
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSE----LAKKLP--- 57
G I+ E+ +E L A +V+F A WC + + PI E + ++ P
Sbjct: 4 GSEITSLDTENIDEILNNADVA----LVNFYADWCRFSQXLHPIFEEASDVIKEEFPNEN 59
Query: 58 AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLER 95
V+F +VD D+ +A+ + + PT L + G +R
Sbjct: 60 QVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKR 97
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 23 GIAAKKLIVVDFTASWCPPCKLMSPILSELAKK 55
G K + + F+ASWCPPC+ +P+L+E +K
Sbjct: 24 GSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK 56
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From
Crithidia Fasciculata
Length = 146
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 18 EQLQKGIA-------AKKLIVVDFTASWCPPCKLMSPILSELAKKL 56
E+L++G A KL+ F+ASWCPPC+ +P L E K
Sbjct: 12 EKLRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKF 57
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 18 EQLQKGIA-------AKKLIVVDFTASWCPPCKLMSPILSELAKKL 56
E+L++G A KL+ F+ASWCPPC+ +P L E K
Sbjct: 11 EKLRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKF 56
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 18 EQLQKGIA-------AKKLIVVDFTASWCPPCKLMSPILSELAKKL 56
E+L++G A KL+ F+ASWCPPC+ +P L E K
Sbjct: 12 EKLRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKF 57
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 18 EQLQKGIA-------AKKLIVVDFTASWCPPCKLMSPILSELAKKL 56
E+L++G A KL+ F+ASWCPPC+ +P L E K
Sbjct: 12 EKLRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKF 57
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 27 KKLIVVDFTASWCPPCKLMSPILSELAKKL---PAVIFLKVDVDELKSVAEEWAVEAMPT 83
K ++++F A WC CK + P EL +KL P ++ K+D V + V PT
Sbjct: 45 NKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-TANDVPSPYEVRGFPT 103
Query: 84 FVLTKEGKVLE 94
+ K L
Sbjct: 104 IYFSPANKKLN 114
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFL-KVDVDELK 70
T +++NE++ +G K VVDF A WC PC+ +P LA+ + + KVD
Sbjct: 9 TPQTFNEKVLQG---KTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYP 65
Query: 71 SVAEEWAVEAMPTFVL----------------TKEGKVLERIVGAKKDELQLAVEKH 111
++ ++A P+ L +++ K + ++ K + LQ V+++
Sbjct: 66 QTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKRN 122
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of
Human Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 31 VVDFTASWCPPCKLMSPILSELAKKL--PAVIFLKVDVDELKSVAEEWAVEA------MP 82
+V+F A+W C+ +PI ++L+ K + F KVDV V+ + V +P
Sbjct: 30 IVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLP 89
Query: 83 TFVLTKEGK 91
T +L + GK
Sbjct: 90 TLILFQGGK 98
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda
Thioredoxin Related Protein 16 And Its Role In
Regulating Transcription Factor Nf-Kb Activity
Length = 143
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 17 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL 56
NE L+ K +I F+A WCPPC+ +PIL+++ +L
Sbjct: 20 NEALKD----KDIIGFYFSAHWCPPCRGFTPILADMYSEL 55
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 26/98 (26%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIF--LKVDVDELKSVAEE---------- 75
++++V+F A+WCPPC+ P L F L V +DE VA E
Sbjct: 29 QVVIVNFWATWCPPCREEIPSXXRLNAAXAGKPFRXLCVSIDEGGKVAVEEFFRKTGFTL 88
Query: 76 -------------WAVEAMP-TFVLTKEGKVLERIVGA 99
+ +P TFV+ + G +L+++VGA
Sbjct: 89 PVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGA 126
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVL 86
K +V F+ C C+ ++P+L EL + F VDV+E K++ + ++++ +P +
Sbjct: 23 KACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILY 82
Query: 87 TKEGKVLERIVGAKKDE 103
K+G+ + G +D+
Sbjct: 83 FKDGEYKGKXAGDVEDD 99
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 37.7 bits (86), Expect = 0.001, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAKKL---PAVIFLKVDVDELKSVAEEWAVEAMPTF 84
K ++++F A WC CK + P EL +KL P ++ K+D V + V PT
Sbjct: 371 KDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA-NDVPSPYEVRGFPTI 429
Query: 85 VLTKEGKVL 93
+ K L
Sbjct: 430 YFSPANKKL 438
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 29 LIVVDFTASWCPPCKLMSPILSELAKKLPAVIFL-KVDVDELKSVAEEWAVEAMPTFVLT 87
L++V+F A WC K ++P A +L ++ L KVD + ++ V PT +
Sbjct: 23 LMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIF 82
Query: 88 KEGK 91
++G+
Sbjct: 83 RDGE 86
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLK-VDVDELKSVAEEWAVEAMP 82
I + L +V+F A WC C+ ++P + A L V+ + V+ D+ +S+ ++ V+ P
Sbjct: 32 IQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFP 91
Query: 83 TFVLTKEGKVLERIVGAKKDE 103
T +I GA K++
Sbjct: 92 TI----------KIFGANKNK 102
>pdb|2DBC|A Chain A, Solution Structure Of The Thioredoxin-Like Domain Of
Phosducin-Like Protein 2(Pdcl2)
Length = 135
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89
+V+ S P C +++ LS LA+K P F+K V+ S E + +PT + K
Sbjct: 33 VVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVN---SCIEHYHDNCLPTIFVYKN 89
Query: 90 GKVLERIVG 98
G++ + +G
Sbjct: 90 GQIEGKFIG 98
>pdb|3EVI|A Chain A, Crystal Structure Of The Thioredoxin-Fold Domain Of
Human Phosducin- Like Protein 2
pdb|3EVI|B Chain B, Crystal Structure Of The Thioredoxin-Fold Domain Of
Human Phosducin- Like Protein 2
Length = 118
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89
+++ S P C L++ LS LA+K P F+K V+ S + + +PT + K
Sbjct: 26 VIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVN---SCIQHYHDNCLPTIFVYKN 82
Query: 90 GKVLERIVG 98
G++ + +G
Sbjct: 83 GQIEAKFIG 91
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 31 VVDFTASWCPPCKLMSPILSELAKKLPAVI---FLKVDVDELKSVAEEWAVEAMPTFVLT 87
+V+F A WC CK +S + AK+L V+ + D+++ K++ ++ V PT ++
Sbjct: 39 LVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVF 98
Query: 88 KEGKV 92
+ K+
Sbjct: 99 RPPKI 103
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 21/87 (24%)
Query: 4 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLK 63
+G+VIS + V ++++ F A+WCP C M+ +L L +K + +
Sbjct: 26 DGEVISLNNV------------GGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIA 73
Query: 64 VDVDELKSVAEEWAVEAMPTFVLTKEG 90
+D W EA+ L K G
Sbjct: 74 IDF---------WTAEALKALGLNKPG 91
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAKK 55
+ K + F+ASWCPPC+ +P L E +K
Sbjct: 47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEK 76
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 18 EQLQKGIA-------AKKLIVVDFTASWCPPCKLMSPILSELAKKL 56
E+L++G A KL+ F+ASWCPP + +P L E K
Sbjct: 12 EKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKF 57
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 27 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVI--FLKVDVDELKSVAEEWAVEAMPTF 84
KK ++V + A WC CK ++P ELA L +D ++ +E PT
Sbjct: 376 KKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTI 435
Query: 85 VLTKEGKVLERIV 97
VL GK E +V
Sbjct: 436 VLYPGGKKSESVV 448
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 3 EEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL--PAVI 60
E+ V+ T +S+NE +Q + L++ +F A WC CK M+P + A+ L +
Sbjct: 12 EDSAVVKLAT-DSFNEYIQ----SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNIT 66
Query: 61 FLKVDVDELKSVAEEWAVEAMPTFVLTKEGKV 92
++D E + + E + P+ + K V
Sbjct: 67 LAQIDCTENQDLCMEHNIPGFPSLKIFKNSDV 98
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAK 54
A K + F+ASWCPPC+ +P L + K
Sbjct: 27 AGKTVFFYFSASWCPPCRAFTPQLIDFYK 55
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAK 54
A K + F+ASWCPPC+ +P L + K
Sbjct: 28 AGKTVFFYFSASWCPPCRAFTPQLIDFYK 56
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAK 54
A K + F+ASWCPPC+ +P L + K
Sbjct: 30 AGKTVFFYFSASWCPPCRAFTPQLIDFYK 58
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAK 54
A K + F+ASWCPPC+ +P L + K
Sbjct: 30 AGKTVFFYFSASWCPPCRAFTPQLIDFYK 58
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 42 CKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 100
C ++PIL LA + I K+D D + +A ++ + A+PT L + G+ ++ G +
Sbjct: 41 CLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQ 100
Query: 101 KDE 103
+E
Sbjct: 101 PEE 103
>pdb|4DVC|A Chain A, Structural And Functional Studies Of Tcpg, The Vibrio
Cholerae Dsba Disulfide-Forming Protein Required For
Pilus And Cholera Toxin Production
Length = 184
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 14 ESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP 57
E + Q+ K A+ +V +F + +CP C PI+++L ++LP
Sbjct: 8 EGEHYQVLKTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLP 51
>pdb|2IJY|A Chain A, Nmr Structure Ensemble For The Reduced Dsba Disulphide
Oxidoreductase From Vibrio Cholerae
Length = 181
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 14 ESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP 57
E + Q+ K A+ +V +F + +CP C PI+++L ++LP
Sbjct: 5 EGEHYQVLKTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLP 48
>pdb|1BED|A Chain A, Structure Of Disulfide Oxidoreductase
Length = 181
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 14 ESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP 57
E + Q+ K A+ +V +F + +CP C PI+++L ++LP
Sbjct: 5 EGEHYQVLKTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLP 48
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 42 CKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 100
C ++P+L LA + I K+D D + +A ++ + A+PT L + G+ ++ G +
Sbjct: 41 CLQLTPVLESLAAQYHGQFILAKLDCDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQGPQ 100
Query: 101 KDE 103
+E
Sbjct: 101 PEE 103
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFL----KVDVDELKSVAEEW 76
K V+ F WCP C +P LS++A PAV F+ + DV ++S ++
Sbjct: 25 KPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKY 77
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 39 CPPCKLMSPILSELAKKL--PAVIFL---KVDVDELKSVAEEW---AVEAMPTFVLTKEG 90
CP C P L + +K++ P V+F+ + EL + E VE PT V KEG
Sbjct: 43 CPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEG 102
Query: 91 KVLERIVGA 99
++++++VGA
Sbjct: 103 RIVDKLVGA 111
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 34 FTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKV 92
FT+ CP C ++ E+A ++P AV ++V E A E+ + A+PT V+ +
Sbjct: 9 FTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGD--- 65
Query: 93 LERIVGAKKDELQLAVEKH 111
+E I K+ L A++K
Sbjct: 66 VEFIGAPTKEALVEAIKKR 84
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 25/97 (25%)
Query: 29 LIVVDFTASWCPPCKLMSPILSELAKKLPAVIF------------------------LKV 64
++ +DF ASWC PC+ P ++ K A F V
Sbjct: 30 VVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQVPAEFTV 89
Query: 65 DVDELKSVAEEWAVEAMPT-FVLTKEGKVLERIVGAK 100
D + V+ PT F++ + GKVL + VG +
Sbjct: 90 AFDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQHVGFR 126
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKV-DVDELKSVAE 74
K V+ F A WCP C+ +P++ ++A P V F+ V +D++ ++ E
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQE 73
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKV-DVDELKSVAE 74
K V+ F A WCP C+ +P++ ++A P V F+ V +D++ ++ E
Sbjct: 40 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQE 87
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 25/102 (24%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAK-----------------KLPAVIFLK------- 63
K + ++F +WC PCK P ++ K K+ F+K
Sbjct: 27 KGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 86
Query: 64 VDVDELKSVAEEWAVEAMP-TFVLTKEGKVLERIVGAKKDEL 104
V +D + V + + V +P TF++ EGKV++ + G + +
Sbjct: 87 VVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESM 128
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVD 65
A K+ V++F +CP C + P+LS+ AK ++L+ +
Sbjct: 40 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTE 79
>pdb|3DVW|A Chain A, Crystal Structure Of Reduced Dsba1 From Neisseria
Meningitidis
Length = 193
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVD 65
A K+ V++F +CP C + P+LS+ AK ++L+ +
Sbjct: 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTE 62
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 27 KKLIVVDFTASWCPPCKLMSPI---LSELAKKLPAVIFLKVD--VDELKSVAEEWAVEAM 81
KK + V+F A WC CK ++PI L E K ++ K+D +E+++V V +
Sbjct: 267 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAV----KVHSF 322
Query: 82 PT 83
PT
Sbjct: 323 PT 324
>pdb|3HZ8|A Chain A, Crystal Structure Of The Oxidized T176v Dsba1 Mutant
Length = 193
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVD 65
A K+ V++F +CP C + P+LS+ AK ++L+ +
Sbjct: 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTE 62
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 25/102 (24%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAK-----------------KLPAVIFLK------- 63
K + ++F +WCP CK P ++ K K+ F+K
Sbjct: 27 KGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 86
Query: 64 VDVDELKSVAEEWAVEAMP-TFVLTKEGKVLERIVGAKKDEL 104
V +D + V + + V +P TF++ EGKV++ + G + +
Sbjct: 87 VVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESM 128
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 27 KKLIVVDFTASWCPPCKLMSPI---LSELAKKLPAVIFLKVD--VDELKSVAEEWAVEAM 81
KK + V+F A WC CK ++PI L E K ++ K+D +E+++V V +
Sbjct: 25 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAV----KVHSF 80
Query: 82 PT 83
PT
Sbjct: 81 PT 82
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 25/102 (24%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAK-----------------KLPAVIFLK------- 63
K + ++F +WC PCK P ++ K K+ F+K
Sbjct: 27 KGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 86
Query: 64 VDVDELKSVAEEWAVEAMP-TFVLTKEGKVLERIVGAKKDEL 104
V +D + V + + V +P TF++ EGKV++ + G + +
Sbjct: 87 VVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESM 128
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAK 54
A K + F+ASWCPP + +P L + K
Sbjct: 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYK 55
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 26/92 (28%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAKKLPA--VIFLKVDVDELK--------------- 70
K I +D A+WC PC+ P L EL +K + F+ + D+ K
Sbjct: 31 KYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGI 90
Query: 71 --------SVAEEWAVEAMPTFV-LTKEGKVL 93
+ + + + +P F+ L ++GK++
Sbjct: 91 QLHMGTDRTFMDAYLINGIPRFILLDRDGKII 122
>pdb|3KH7|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Reduced Ccmg From Pseudomonas Aeruginosa
pdb|3KH9|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Oxidized Ccmg From Pseudomonas Aeruginosa
Length = 176
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLT 87
K +V+ +WCP C++ P L+ LA++ V+ ++ + + A +W E ++L+
Sbjct: 59 KPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLS 116
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 32.0 bits (71), Expect = 0.082, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 20/117 (17%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFL-KVDVDELK 70
T +++NE++ +G K VVDF A W P + +P LA+ + + KVD
Sbjct: 663 TPQTFNEKVLQG---KTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYP 719
Query: 71 SVAEEWAVEAMPTFVL----------------TKEGKVLERIVGAKKDELQLAVEKH 111
++ ++A P+ L +++ K + ++ K + LQ V+++
Sbjct: 720 QTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKRN 776
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEE-----WAVEAMPTFV 85
+VDF A W PP + + P L +K +++ ++ V L E + ++A PT V
Sbjct: 459 LVDFFAPWSPPSRALLPEL----RKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTV 514
Query: 86 LTKEGKVLE 94
+ + + E
Sbjct: 515 VFNQSSIHE 523
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFL-KVDVDELK 70
T ++NE L K ++ +VDF + W P +++ P +A+ L +I + VD +
Sbjct: 549 TPSTFNE-LVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYH 607
Query: 71 SVAEEWAVEAMP 82
S + V+ P
Sbjct: 608 SFCTQENVQRYP 619
>pdb|1WEH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
pdb|1WEH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
Length = 171
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 1 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTA 36
+AEEG ++C + E L +G+ AK +VV TA
Sbjct: 29 LAEEGFGLACGGYQGGXEALARGVKAKGGLVVGVTA 64
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 28 KLIVVDFTASWCPPCK 43
K +V+F A+WCPPC+
Sbjct: 35 KAYIVNFFATWCPPCR 50
>pdb|3DVX|A Chain A, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
pdb|3DVX|B Chain B, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
Length = 196
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVD 65
+ K+ V++F +C C P+L +L K LP+ +L+ +
Sbjct: 22 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTE 61
>pdb|2ZNM|A Chain A, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|B Chain B, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|C Chain C, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|D Chain D, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
Length = 195
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVD 65
+ K+ V++F +C C P+L +L K LP+ +L+ +
Sbjct: 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTE 60
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 17/104 (16%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKL----PAVIFLKVDVDE--LKSVAEEWA 77
+ ++ V+F ASWC C +P LA+ + PA+ +D E +V ++
Sbjct: 27 LGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFN 86
Query: 78 VEAMPT------FVLTKEGKVLERIVGAK----KDELQLAVEKH 111
+ PT F G V + GA ++ L A+E H
Sbjct: 87 IPGFPTVRFFXAFTXNGSGAVFP-VAGADVQTLRERLIDALESH 129
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIF--LKVDVD 67
K ++V+ A+WC PC+ P L EL KL F + +++D
Sbjct: 61 KTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINID 102
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
Length = 154
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 37/103 (35%), Gaps = 27/103 (26%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELA-------------------------KKLPAVI-F 61
K V+ F ASWC CK P L +A K P I
Sbjct: 31 KPAVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPL 90
Query: 62 LKVDVDELKSVAEEWAVEAMP-TFVLTKEGKVLERIVGAKKDE 103
L D D VA + V P TFV+ +EGKV+ G E
Sbjct: 91 LASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGRE 133
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion
Mutant Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion
Mutant Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83
+ K ++++ A+WCP C+ L++L+ + V+ + D K+++ W E
Sbjct: 9 LTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAIS--WLKELGNP 66
Query: 84 FVLT 87
+ L+
Sbjct: 67 YALS 70
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 25/102 (24%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAK-----------------KLPAVIFLK------- 63
K + ++F +WC CK P ++ K K+ F+K
Sbjct: 24 KGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 83
Query: 64 VDVDELKSVAEEWAVEAMP-TFVLTKEGKVLERIVGAKKDEL 104
V +D + V + + V +P TF++ EGKV++ + G + +
Sbjct: 84 VVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESM 125
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 28.9 bits (63), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 25/102 (24%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAK-----------------KLPAVIFLK------- 63
K + ++F +WC P K P ++ K K+ F+K
Sbjct: 27 KGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 86
Query: 64 VDVDELKSVAEEWAVEAMP-TFVLTKEGKVLERIVGAKKDEL 104
V +D + V + + V +P TF++ EGKV++ + G + +
Sbjct: 87 VVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESM 128
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 28.9 bits (63), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 25/102 (24%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAK-----------------KLPAVIFLK------- 63
K + ++F +W PCK P ++ K K+ F+K
Sbjct: 27 KGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 86
Query: 64 VDVDELKSVAEEWAVEAMP-TFVLTKEGKVLERIVGAKKDEL 104
V +D + V + + V +P TF++ EGKV++ + G + +
Sbjct: 87 VVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESM 128
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83
+ K ++++ A+WCP C+ L++L+ + V+ + D K+++ W E
Sbjct: 48 LTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAIS--WLKELGNP 105
Query: 84 FVLT 87
+ L+
Sbjct: 106 YALS 109
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83
+ K ++++ A+WCP C+ L++L+ + V+ + D K+++ W E
Sbjct: 48 LTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAIS--WLKELGNP 105
Query: 84 FVLT 87
+ L+
Sbjct: 106 YALS 109
>pdb|3FEU|A Chain A, Crystal Structure Of Dsba-like Thioredoxin Domain Vf_a0457
From Vibrio Fischeri
Length = 185
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 66 VDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLA 107
VD K ++E+ + ++PTFV+ + VL +G D Q+A
Sbjct: 138 VDNAKXLSEKSGISSVPTFVVNGKYNVL---IGGHDDPKQIA 176
>pdb|3IWJ|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 2 From
Pisum Sativum (Psamadh2)
pdb|3IWJ|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 2 From
Pisum Sativum (Psamadh2)
Length = 503
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 32 VDFTASWCPPCKLMS-------PILSELAKKLPAVIFLKVDVDELKSVAEEWAV 78
V FT S K+M+ P+ EL K P V+F VD+D+ A EWA+
Sbjct: 234 VAFTGSSATGSKIMTAAAQLVKPVSLELGGKSPLVVFEDVDLDK----AAEWAI 283
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVE 79
++ F SWCPPCK P P+ V V+ + S + VE
Sbjct: 38 ILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVE 86
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELA 53
K ++++F A WC CK ++P EL
Sbjct: 26 KDVLIEFYAPWCGHCKALAPKYEELG 51
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLT 87
K ++++ A+WCP C+ L++L+ + V+ + D K+++ W E + L+
Sbjct: 69 KPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAIS--WLKELGNPYALS 126
>pdb|3S81|A Chain A, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium
pdb|3S81|B Chain B, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium
pdb|3S81|C Chain C, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium
pdb|3S81|D Chain D, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium
Length = 268
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPP 41
VI C+T W + LQ A+ + ++D T PP
Sbjct: 104 VIPCNTAHYWFDDLQNVAKARMISILDATLGDIPP 138
>pdb|3S7Z|A Chain A, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium Complexed With Succinate
pdb|3S7Z|B Chain B, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium Complexed With Succinate
Length = 268
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPP 41
VI C+T W + LQ A+ + ++D T PP
Sbjct: 104 VIPCNTAHYWFDDLQNVAKARXISILDATLGDIPP 138
>pdb|3EQX|A Chain A, Crystal Structure Of A Fic Family Protein (So_4266) From
Shewanella Oneidensis At 1.6 A Resolution
pdb|3EQX|B Chain B, Crystal Structure Of A Fic Family Protein (So_4266) From
Shewanella Oneidensis At 1.6 A Resolution
Length = 373
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 11 HTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD--- 67
HT E +QL K I + +L+ V F P C++ + + S LAK+ A ++LK D
Sbjct: 285 HTTEYVRQQLPK-IYSHELVQVIFEQ---PYCRIQNLVESGLAKRQTASVYLKQLCDIGV 340
Query: 68 --ELKSVAEEWAVEAMPTFVLTKEGKVLER 95
E++S E+ V + TK+ R
Sbjct: 341 LEEVQSGKEKLFVHPKFVTLXTKDSNQFSR 370
>pdb|3IWK|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|C Chain C, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|D Chain D, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|E Chain E, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|F Chain F, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|G Chain G, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|H Chain H, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|I Chain I, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|J Chain J, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|K Chain K, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
pdb|3IWK|L Chain L, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
Pisum Sativum (Psamadh1)
Length = 503
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 32 VDFTASWCPPCKLMS-------PILSELAKKLPAVIFLKVDVDELKSVAEEWAV 78
+ FT S K+M+ P+ EL K P V+F VD+D++ EW V
Sbjct: 234 ISFTGSSATGSKIMTTAAQLVKPVSLELGGKSPIVVFEDVDLDKVA----EWTV 283
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 28 KLIVVDFTASWCPPCKLMSPIL 49
K++++ FTASWC C+ P +
Sbjct: 34 KVVMLQFTASWCGVCRKEMPFI 55
>pdb|4A0M|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Spinach In Complex With Nad
pdb|4A0M|B Chain B, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Spinach In Complex With Nad
pdb|4A0M|C Chain C, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Spinach In Complex With Nad
pdb|4A0M|D Chain D, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Spinach In Complex With Nad
Length = 496
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 43 KLMSPILSELAKKLPAVIFLKVDVDEL 69
+L+ P+ EL K P V+F VD+D++
Sbjct: 249 QLVKPVTLELGGKSPIVVFEDVDIDKV 275
>pdb|2IGI|A Chain A, Crystal Structure Of E. Coli Oligoribonuclease
pdb|2IGI|B Chain B, Crystal Structure Of E. Coli Oligoribonuclease
Length = 180
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 8 ISCHTVESWNEQLQKGIAAKK---LIVVDFTASWCPPCKLMSPILSE--------LAKKL 56
+ HT E+++ + L ++F W P K SPI L K +
Sbjct: 62 VRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGK--SPICGNSIGQDRRFLFKYM 119
Query: 57 PAV----IFLKVDVDELKSVAEEWAVEAMPTFVLTKEG 90
P + + +DV LK +A W E + F TK+G
Sbjct: 120 PELEAYFHYRYLDVSTLKELARRWKPEILDGF--TKQG 155
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 9 SCHTVESWNEQLQKGI-AAKKLIVVDFTASWCPPCKLMSP----ILSELAKKLPAVIFL- 62
S +E ++ K + ++ + +V+F A WC CK + P SE+ ++ + L
Sbjct: 6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLA 65
Query: 63 KVDVDELKSVAEEWAVEAMPTFVLTKEGK 91
VD + +A + + PT + ++G+
Sbjct: 66 AVDATVNQVLASRYGIRGFPTIKIFQKGE 94
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN
INTERDOMAIN DISULFIDE
Length = 519
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 32 VDFTASWCPPCKLMSPILSELAKKL----PAVIFLKVDVDEL--KSVAEEWAVEAMPT 83
V+F ASWC +P ELA + PA+ +D E +V E+ + PT
Sbjct: 35 VEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPT 92
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 18 EQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL 69
E+ G+ ++ F + P + ++ ILSE+ L +VI+ ++D E+
Sbjct: 75 EKFDLGVCVNGFVLDGFPRT-IPQAEGLAKILSEIGDSLTSVIYFEIDDSEI 125
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAK--KLPAVIFLKVDVDELKSVAEEWAVEAMPTF- 84
K + ++F +WC PCK P + K K V + V+V E K + F
Sbjct: 27 KGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEIVAVNVGESKIAVHNFXKSYGVNFP 86
Query: 85 -VLTKEGKVLE 94
VL + +VL+
Sbjct: 87 VVLDTDRQVLD 97
>pdb|4I8P|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1a From
Zea Mays (zmamadh1a)
pdb|4I8P|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 1a From
Zea Mays (zmamadh1a)
Length = 520
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 44 LMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAV 78
++ P+ EL K P V+F VD+D+ A EW +
Sbjct: 270 MVKPVTLELGGKSPIVVFDDVDIDK----AVEWTL 300
>pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1J|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1U|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U22|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
Length = 765
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 48 ILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA 99
+LS L K LP I+ +V + ELK+ W P V EG+ L+ GA
Sbjct: 177 LLSLLPKILP--IYKEV-ITELKAAGATWIQLDEPVLVXDLEGQKLQAFTGA 225
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 25/102 (24%)
Query: 28 KLIVVDFTASWCPPCKLMSPILSELAK-----------------KLPAVIFLK------- 63
K + ++F +W P K P ++ K K+ F+K
Sbjct: 27 KGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 86
Query: 64 VDVDELKSVAEEWAVEAMPT-FVLTKEGKVLERIVGAKKDEL 104
V +D + V + + V +PT F++ EGKV++ + G + +
Sbjct: 87 VVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESM 128
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 31 VVDFTASWCPPCKLMSPILSELAK 54
+V+ A+WC PC+ P S+ K
Sbjct: 28 IVNLWATWCGPCRKEXPAXSKWYK 51
>pdb|2O1U|A Chain A, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1U|B Chain B, Structure Of Full Length Grp94 With Amp-Pnp Bound
pdb|2O1V|A Chain A, Structure Of Full Length Grp94 With Adp Bound
pdb|2O1V|B Chain B, Structure Of Full Length Grp94 With Adp Bound
Length = 666
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 46 SPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIV--GAKKDE 103
SP + L KK VI+L VD E+ ++A+P F +GK + + G K DE
Sbjct: 464 SPFVERLLKKGYEVIYLTEPVD-------EYCIQALPEF----DGKRFQNVAKEGVKFDE 512
>pdb|2O1T|A Chain A, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|B Chain B, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|C Chain C, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|D Chain D, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|E Chain E, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|F Chain F, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|G Chain G, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|H Chain H, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|I Chain I, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
pdb|2O1T|J Chain J, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94
Length = 450
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 46 SPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIV--GAKKDE 103
SP + L KK VI+L VD E+ ++A+P F +GK + + G K DE
Sbjct: 237 SPFVERLLKKGYEVIYLTEPVD-------EYCIQALPEF----DGKRFQNVAKEGVKFDE 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,084,123
Number of Sequences: 62578
Number of extensions: 101597
Number of successful extensions: 650
Number of sequences better than 100.0: 220
Number of HSP's better than 100.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 226
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)