Query 033251
Match_columns 123
No_of_seqs 120 out of 1073
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 11:39:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 1.2E-27 2.6E-32 144.3 11.1 105 6-113 43-149 (150)
2 cd02985 TRX_CDSP32 TRX family, 99.9 9.9E-26 2.1E-30 131.3 13.2 97 12-110 2-101 (103)
3 KOG0907 Thioredoxin [Posttrans 99.9 1.6E-25 3.4E-30 130.2 12.6 103 9-111 3-105 (106)
4 COG3118 Thioredoxin domain-con 99.9 4.3E-26 9.3E-31 150.6 10.1 109 5-115 23-133 (304)
5 cd02954 DIM1 Dim1 family; Dim1 99.9 2.1E-25 4.5E-30 130.7 10.5 85 13-99 2-87 (114)
6 cd02948 TRX_NDPK TRX domain, T 99.9 8.2E-25 1.8E-29 127.2 12.9 97 9-110 3-101 (102)
7 PHA02278 thioredoxin-like prot 99.9 4.9E-25 1.1E-29 127.9 11.7 93 11-107 2-100 (103)
8 PF00085 Thioredoxin: Thioredo 99.9 1.5E-24 3.2E-29 125.9 13.7 98 11-111 4-103 (103)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.9 3.6E-24 7.9E-29 126.1 12.1 104 2-107 6-112 (113)
10 cd02989 Phd_like_TxnDC9 Phosdu 99.9 3.2E-24 6.8E-29 126.8 11.7 93 3-99 2-94 (113)
11 cd02956 ybbN ybbN protein fami 99.9 4.4E-24 9.5E-29 122.8 11.7 93 15-109 2-96 (96)
12 PTZ00051 thioredoxin; Provisio 99.9 7.7E-24 1.7E-28 122.1 12.4 96 7-106 2-97 (98)
13 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 4.7E-24 1E-28 123.8 11.2 97 6-107 2-100 (101)
14 PLN00410 U5 snRNP protein, DIM 99.9 8.5E-24 1.8E-28 128.2 12.1 108 7-116 5-124 (142)
15 PRK09381 trxA thioredoxin; Pro 99.9 3.1E-23 6.6E-28 121.8 13.7 105 4-112 2-108 (109)
16 cd02963 TRX_DnaJ TRX domain, D 99.9 1E-23 2.2E-28 124.4 11.1 98 12-110 10-110 (111)
17 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.2E-23 2.6E-28 122.6 11.3 99 6-108 2-104 (104)
18 PRK10996 thioredoxin 2; Provis 99.9 4.3E-23 9.2E-28 126.0 13.7 103 5-112 35-139 (139)
19 cd02999 PDI_a_ERp44_like PDIa 99.9 1.3E-23 2.9E-28 121.6 10.9 83 25-108 16-100 (100)
20 cd02984 TRX_PICOT TRX domain, 99.9 4.3E-23 9.3E-28 118.7 12.1 95 12-108 1-96 (97)
21 cd02957 Phd_like Phosducin (Ph 99.9 2.7E-23 5.8E-28 122.9 11.3 93 4-99 3-95 (113)
22 cd02996 PDI_a_ERp44 PDIa famil 99.9 5.2E-23 1.1E-27 120.7 11.2 98 6-108 2-108 (108)
23 cd03065 PDI_b_Calsequestrin_N 99.9 1.3E-22 2.8E-27 120.4 12.2 102 6-112 10-119 (120)
24 KOG0908 Thioredoxin-like prote 99.9 1.3E-22 2.7E-27 130.9 11.2 111 6-118 2-112 (288)
25 cd02994 PDI_a_TMX PDIa family, 99.9 3.6E-22 7.8E-27 115.8 12.1 97 6-110 2-101 (101)
26 cd02987 Phd_like_Phd Phosducin 99.9 3.7E-22 8.1E-27 125.9 12.9 105 4-110 61-173 (175)
27 cd02965 HyaE HyaE family; HyaE 99.9 2.3E-22 5.1E-27 117.1 10.9 90 12-105 16-109 (111)
28 PTZ00443 Thioredoxin domain-co 99.9 6.9E-22 1.5E-26 128.6 13.9 111 5-116 30-143 (224)
29 cd02986 DLP Dim1 family, Dim1- 99.9 4.4E-22 9.5E-27 116.0 11.0 97 13-111 2-110 (114)
30 cd02950 TxlA TRX-like protein 99.9 1.1E-21 2.4E-26 120.2 12.9 93 23-115 16-113 (142)
31 cd03005 PDI_a_ERp46 PDIa famil 99.9 6.2E-22 1.3E-26 114.8 11.1 96 7-108 2-102 (102)
32 TIGR01068 thioredoxin thioredo 99.9 1.5E-21 3.3E-26 112.7 12.4 97 13-112 3-101 (101)
33 cd02962 TMX2 TMX2 family; comp 99.9 1.7E-21 3.7E-26 120.0 13.1 92 5-99 28-127 (152)
34 cd03002 PDI_a_MPD1_like PDI fa 99.9 7.1E-22 1.5E-26 115.9 10.8 98 7-108 2-108 (109)
35 cd02975 PfPDO_like_N Pyrococcu 99.9 1.9E-21 4.1E-26 114.9 11.8 99 15-113 10-111 (113)
36 cd02997 PDI_a_PDIR PDIa family 99.9 2.4E-21 5.2E-26 112.6 11.8 97 7-108 2-104 (104)
37 TIGR01126 pdi_dom protein disu 99.9 1.6E-21 3.5E-26 112.9 11.0 95 13-111 3-101 (102)
38 cd02949 TRX_NTR TRX domain, no 99.9 7.1E-21 1.5E-25 109.7 11.9 91 16-109 5-97 (97)
39 cd02953 DsbDgamma DsbD gamma f 99.9 1.4E-21 3.1E-26 113.9 9.1 91 15-109 3-104 (104)
40 cd03001 PDI_a_P5 PDIa family, 99.9 7.6E-21 1.7E-25 110.4 11.9 98 7-108 2-102 (103)
41 TIGR01295 PedC_BrcD bacterioci 99.9 1.1E-20 2.3E-25 113.0 12.1 93 12-109 12-121 (122)
42 cd03000 PDI_a_TMX3 PDIa family 99.9 5.9E-21 1.3E-25 111.3 10.3 86 25-111 13-103 (104)
43 cd02951 SoxW SoxW family; SoxW 99.9 2.9E-20 6.3E-25 111.6 11.5 99 17-115 3-122 (125)
44 cd02998 PDI_a_ERp38 PDIa famil 99.8 2.1E-20 4.5E-25 108.7 9.9 98 7-108 2-105 (105)
45 cd02947 TRX_family TRX family; 99.8 5.1E-20 1.1E-24 104.2 11.2 90 15-108 2-92 (93)
46 cd02988 Phd_like_VIAF Phosduci 99.8 7.2E-20 1.6E-24 116.9 12.8 102 4-110 81-190 (192)
47 cd02961 PDI_a_family Protein D 99.8 2.7E-20 5.9E-25 107.0 9.8 92 13-108 5-101 (101)
48 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 4E-20 8.7E-25 107.4 10.5 97 7-108 2-104 (104)
49 PTZ00062 glutaredoxin; Provisi 99.8 4.3E-20 9.4E-25 118.5 11.5 94 11-115 4-97 (204)
50 cd02993 PDI_a_APS_reductase PD 99.8 8E-20 1.7E-24 107.3 11.1 101 6-108 2-109 (109)
51 cd02952 TRP14_like Human TRX-r 99.8 1.3E-19 2.9E-24 107.3 10.4 98 9-108 5-118 (119)
52 cd02992 PDI_a_QSOX PDIa family 99.8 5.8E-19 1.3E-23 104.4 8.4 82 6-91 2-89 (114)
53 PTZ00102 disulphide isomerase; 99.8 3.1E-18 6.8E-23 122.6 13.0 104 6-115 33-141 (477)
54 PRK00293 dipZ thiol:disulfide 99.8 2.6E-18 5.6E-23 125.2 12.3 107 6-112 453-570 (571)
55 TIGR01130 ER_PDI_fam protein d 99.8 3.1E-18 6.7E-23 121.9 12.2 104 7-115 3-112 (462)
56 PLN02309 5'-adenylylsulfate re 99.8 8.3E-18 1.8E-22 119.0 12.9 107 3-111 343-456 (457)
57 PTZ00102 disulphide isomerase; 99.8 4.7E-18 1E-22 121.7 11.8 108 6-117 358-470 (477)
58 KOG0190 Protein disulfide isom 99.8 2.9E-18 6.2E-23 121.2 10.3 108 4-116 24-136 (493)
59 TIGR00424 APS_reduc 5'-adenyly 99.8 9.1E-18 2E-22 118.9 12.5 107 3-111 349-462 (463)
60 cd02959 ERp19 Endoplasmic reti 99.8 1.5E-18 3.2E-23 103.1 6.1 103 10-113 3-114 (117)
61 TIGR00411 redox_disulf_1 small 99.8 3E-17 6.5E-22 91.5 10.1 79 30-112 2-82 (82)
62 TIGR02187 GlrX_arch Glutaredox 99.7 8.7E-17 1.9E-21 104.7 12.9 89 26-114 18-113 (215)
63 cd02982 PDI_b'_family Protein 99.7 3.2E-17 6.9E-22 95.1 8.5 86 26-111 11-102 (103)
64 cd03007 PDI_a_ERp29_N PDIa fam 99.7 5.9E-17 1.3E-21 95.3 9.5 97 7-111 3-115 (116)
65 PF13098 Thioredoxin_2: Thiore 99.7 3.7E-17 8.1E-22 96.2 8.4 84 25-108 3-112 (112)
66 PRK15412 thiol:disulfide inter 99.7 2.4E-16 5.2E-21 100.5 10.8 90 25-116 66-180 (185)
67 TIGR02187 GlrX_arch Glutaredox 99.7 3.9E-16 8.5E-21 101.7 11.8 82 26-110 132-214 (215)
68 TIGR00385 dsbE periplasmic pro 99.7 6.9E-16 1.5E-20 97.4 11.0 87 25-113 61-172 (173)
69 cd02955 SSP411 TRX domain, SSP 99.7 1E-15 2.2E-20 91.5 10.7 93 19-111 7-118 (124)
70 PHA02125 thioredoxin-like prot 99.7 1E-15 2.2E-20 84.2 9.4 69 31-107 2-72 (75)
71 KOG4277 Uncharacterized conser 99.7 2.1E-16 4.5E-21 105.3 7.6 101 13-114 30-134 (468)
72 PRK14018 trifunctional thiored 99.7 1.1E-15 2.3E-20 109.7 11.6 86 25-110 54-171 (521)
73 TIGR02740 TraF-like TraF-like 99.7 3.1E-15 6.7E-20 100.3 12.9 88 25-113 164-265 (271)
74 cd03010 TlpA_like_DsbE TlpA-li 99.7 1.2E-15 2.6E-20 91.7 9.7 78 25-103 23-125 (127)
75 TIGR02738 TrbB type-F conjugat 99.7 3.5E-15 7.6E-20 92.3 11.0 87 25-112 48-153 (153)
76 cd02958 UAS UAS family; UAS is 99.7 6.5E-15 1.4E-19 87.1 11.5 100 14-113 4-112 (114)
77 TIGR01130 ER_PDI_fam protein d 99.6 2.2E-15 4.8E-20 107.3 11.0 104 5-114 346-456 (462)
78 cd02973 TRX_GRX_like Thioredox 99.6 2E-15 4.4E-20 81.2 8.2 62 30-93 2-63 (67)
79 cd03026 AhpF_NTD_C TRX-GRX-lik 99.6 7.1E-15 1.5E-19 83.2 10.7 76 25-104 10-86 (89)
80 PRK11509 hydrogenase-1 operon 99.6 1.2E-14 2.5E-19 87.2 12.0 100 14-117 25-129 (132)
81 KOG0190 Protein disulfide isom 99.6 8.2E-16 1.8E-20 108.9 7.8 101 7-113 368-474 (493)
82 TIGR00412 redox_disulf_2 small 99.6 6.6E-15 1.4E-19 81.1 9.5 70 32-108 3-75 (76)
83 KOG0912 Thiol-disulfide isomer 99.6 2E-15 4.4E-20 100.4 7.3 97 14-114 4-108 (375)
84 PF13905 Thioredoxin_8: Thiore 99.6 1.1E-14 2.4E-19 83.3 8.5 66 27-92 1-95 (95)
85 PRK03147 thiol-disulfide oxido 99.6 4.9E-14 1.1E-18 88.7 11.5 87 25-111 59-171 (173)
86 cd02960 AGR Anterior Gradient 99.6 1.1E-14 2.3E-19 87.3 7.6 90 9-99 5-99 (130)
87 KOG0191 Thioredoxin/protein di 99.6 2E-14 4.3E-19 100.8 10.1 91 25-115 45-137 (383)
88 cd03009 TryX_like_TryX_NRX Try 99.6 2E-14 4.4E-19 86.8 8.5 71 25-95 16-115 (131)
89 cd03008 TryX_like_RdCVF Trypar 99.6 2.6E-14 5.6E-19 87.6 9.0 71 25-95 23-128 (146)
90 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 5.3E-14 1.2E-18 84.0 9.7 82 25-107 18-121 (123)
91 PLN02919 haloacid dehalogenase 99.6 5.1E-14 1.1E-18 108.7 11.9 89 25-113 418-537 (1057)
92 cd02964 TryX_like_family Trypa 99.6 3.6E-14 7.8E-19 85.9 8.6 72 25-96 15-116 (132)
93 cd02966 TlpA_like_family TlpA- 99.6 6.9E-14 1.5E-18 81.7 9.4 73 26-98 18-116 (116)
94 PRK13728 conjugal transfer pro 99.6 1.3E-13 2.7E-18 87.0 10.9 83 31-114 73-173 (181)
95 cd03012 TlpA_like_DipZ_like Tl 99.5 1.7E-13 3.6E-18 82.3 9.7 75 25-99 21-125 (126)
96 KOG1731 FAD-dependent sulfhydr 99.5 8.2E-15 1.8E-19 104.3 4.4 109 3-115 37-156 (606)
97 PTZ00056 glutathione peroxidas 99.5 2.5E-13 5.4E-18 87.6 10.2 91 25-115 37-181 (199)
98 PF13899 Thioredoxin_7: Thiore 99.5 1.4E-13 3E-18 76.8 6.9 76 12-88 2-81 (82)
99 smart00594 UAS UAS domain. 99.5 9.2E-13 2E-17 78.8 10.6 96 13-108 13-121 (122)
100 PF08534 Redoxin: Redoxin; In 99.5 5.2E-13 1.1E-17 82.0 9.4 76 25-100 26-135 (146)
101 COG4232 Thiol:disulfide interc 99.5 3.6E-13 7.8E-18 96.7 9.0 102 8-111 457-567 (569)
102 TIGR01626 ytfJ_HI0045 conserve 99.5 1.1E-12 2.4E-17 83.1 10.2 82 24-107 56-175 (184)
103 PF06110 DUF953: Eukaryotic pr 99.5 1E-12 2.3E-17 77.6 9.1 100 10-109 2-118 (119)
104 PLN02399 phospholipid hydroper 99.5 1.5E-12 3.2E-17 85.6 10.7 89 25-113 97-235 (236)
105 TIGR02661 MauD methylamine deh 99.5 1.6E-12 3.5E-17 83.2 10.6 86 25-111 72-178 (189)
106 cd02967 mauD Methylamine utili 99.5 8.3E-13 1.8E-17 77.8 8.6 70 26-95 20-111 (114)
107 PF02114 Phosducin: Phosducin; 99.4 1.5E-12 3.2E-17 87.0 8.0 106 4-111 124-237 (265)
108 TIGR02540 gpx7 putative glutat 99.4 6.3E-12 1.4E-16 77.9 10.3 88 25-112 20-153 (153)
109 COG2143 Thioredoxin-related pr 99.4 1.3E-11 2.7E-16 75.2 10.7 94 16-109 31-146 (182)
110 PLN02412 probable glutathione 99.4 9.5E-12 2.1E-16 78.2 10.6 90 25-114 27-166 (167)
111 PF14595 Thioredoxin_9: Thiore 99.4 6.6E-12 1.4E-16 75.6 9.3 85 25-110 39-127 (129)
112 cd02969 PRX_like1 Peroxiredoxi 99.4 2.8E-11 6.1E-16 76.2 11.9 92 26-117 24-157 (171)
113 PF11009 DUF2847: Protein of u 99.4 4.3E-11 9.2E-16 69.0 11.0 95 8-104 2-104 (105)
114 TIGR02196 GlrX_YruB Glutaredox 99.3 1.5E-11 3.2E-16 66.7 8.1 68 31-108 2-73 (74)
115 PF13728 TraF: F plasmid trans 99.3 4E-11 8.6E-16 78.1 11.3 82 26-108 119-214 (215)
116 cd00340 GSH_Peroxidase Glutath 99.3 1.4E-11 3E-16 76.3 8.6 82 25-107 20-151 (152)
117 KOG0191 Thioredoxin/protein di 99.3 1.5E-11 3.2E-16 86.4 9.6 104 7-114 146-254 (383)
118 KOG0914 Thioredoxin-like prote 99.3 1.4E-11 3.1E-16 78.8 5.9 92 5-98 124-223 (265)
119 cd03017 PRX_BCP Peroxiredoxin 99.2 8.2E-11 1.8E-15 71.6 8.5 82 26-107 22-138 (140)
120 PF13192 Thioredoxin_3: Thiore 99.2 2E-10 4.3E-15 63.1 9.1 71 33-109 4-76 (76)
121 cd02991 UAS_ETEA UAS family, E 99.2 6.6E-10 1.4E-14 65.8 11.8 97 15-113 5-114 (116)
122 COG0526 TrxA Thiol-disulfide i 99.2 1.1E-10 2.5E-15 67.9 8.2 83 27-109 32-121 (127)
123 TIGR02739 TraF type-F conjugat 99.2 6.1E-10 1.3E-14 74.0 12.1 88 26-114 149-250 (256)
124 KOG1672 ATP binding protein [P 99.2 1.4E-10 3.1E-15 72.9 8.1 92 4-99 65-156 (211)
125 PF00578 AhpC-TSA: AhpC/TSA fa 99.2 1.9E-10 4.2E-15 68.5 8.2 70 26-95 24-124 (124)
126 cd03014 PRX_Atyp2cys Peroxired 99.2 2.9E-10 6.3E-15 69.5 9.1 83 26-108 25-141 (143)
127 PF02966 DIM1: Mitosis protein 99.2 1.1E-09 2.4E-14 65.0 10.9 104 7-113 2-118 (133)
128 KOG3425 Uncharacterized conser 99.2 1.7E-10 3.6E-15 67.2 7.2 77 12-89 11-104 (128)
129 TIGR02200 GlrX_actino Glutared 99.2 3.1E-10 6.7E-15 62.2 8.0 70 31-109 2-76 (77)
130 PTZ00256 glutathione peroxidas 99.2 3.7E-10 8.1E-15 72.0 9.3 89 25-113 38-182 (183)
131 KOG3414 Component of the U4/U6 99.2 6.4E-10 1.4E-14 65.3 8.9 105 7-113 5-121 (142)
132 PRK00522 tpx lipid hydroperoxi 99.2 7.1E-10 1.5E-14 69.7 9.7 75 25-99 42-150 (167)
133 PRK10877 protein disulfide iso 99.2 7.2E-10 1.6E-14 73.1 10.1 81 25-111 105-230 (232)
134 cd03015 PRX_Typ2cys Peroxiredo 99.1 1.5E-09 3.2E-14 68.6 10.4 87 26-112 28-157 (173)
135 PRK13703 conjugal pilus assemb 99.1 1.7E-09 3.7E-14 71.5 10.6 88 26-113 142-242 (248)
136 cd01659 TRX_superfamily Thiore 99.1 7.2E-10 1.6E-14 57.7 7.0 60 31-90 1-63 (69)
137 PRK11200 grxA glutaredoxin 1; 99.1 3.5E-09 7.6E-14 59.3 8.8 76 30-112 2-83 (85)
138 TIGR03137 AhpC peroxiredoxin. 99.1 3.4E-09 7.5E-14 67.8 9.8 86 25-110 29-154 (187)
139 PF03190 Thioredox_DsbH: Prote 99.1 1.4E-09 3.1E-14 67.5 7.6 95 17-111 27-140 (163)
140 KOG2501 Thioredoxin, nucleored 99.0 1.1E-09 2.4E-14 67.2 6.5 71 25-95 31-131 (157)
141 cd02970 PRX_like2 Peroxiredoxi 99.0 3.7E-09 8E-14 64.8 8.9 43 26-68 22-67 (149)
142 cd03018 PRX_AhpE_like Peroxire 99.0 5.4E-09 1.2E-13 64.2 9.4 75 26-100 26-134 (149)
143 PRK10606 btuE putative glutath 99.0 5.9E-09 1.3E-13 66.4 9.1 42 25-67 23-66 (183)
144 PRK09437 bcp thioredoxin-depen 99.0 7.9E-09 1.7E-13 64.0 9.5 76 25-100 28-140 (154)
145 PRK11657 dsbG disulfide isomer 99.0 8.4E-09 1.8E-13 68.8 10.0 84 25-109 115-249 (251)
146 cd02971 PRX_family Peroxiredox 99.0 5.7E-09 1.2E-13 63.4 8.3 75 26-100 21-130 (140)
147 cd03023 DsbA_Com1_like DsbA fa 99.0 9.3E-09 2E-13 63.2 9.3 41 25-65 3-43 (154)
148 KOG0911 Glutaredoxin-related p 99.0 9E-10 1.9E-14 70.9 4.2 103 7-115 3-105 (227)
149 cd02968 SCO SCO (an acronym fo 99.0 6.4E-09 1.4E-13 63.4 7.9 42 26-67 21-68 (142)
150 cd02976 NrdH NrdH-redoxin (Nrd 99.0 1.1E-08 2.3E-13 55.2 7.9 68 31-108 2-73 (73)
151 PRK10382 alkyl hydroperoxide r 98.9 2.6E-08 5.6E-13 63.7 10.5 87 26-112 30-156 (187)
152 cd03020 DsbA_DsbC_DsbG DsbA fa 98.9 9.7E-09 2.1E-13 66.1 8.4 77 25-108 75-197 (197)
153 TIGR02180 GRX_euk Glutaredoxin 98.9 5.6E-09 1.2E-13 58.1 6.4 60 31-93 1-65 (84)
154 PRK13190 putative peroxiredoxi 98.9 3E-08 6.6E-13 64.1 10.1 89 25-113 25-155 (202)
155 PRK15000 peroxidase; Provision 98.9 3.1E-08 6.6E-13 64.0 10.1 87 26-112 33-162 (200)
156 TIGR02183 GRXA Glutaredoxin, G 98.9 2.8E-08 6E-13 55.8 8.7 75 31-112 2-82 (86)
157 KOG0913 Thiol-disulfide isomer 98.9 5.9E-10 1.3E-14 72.1 1.9 98 6-111 25-125 (248)
158 TIGR03143 AhpF_homolog putativ 98.9 3.9E-08 8.4E-13 72.3 11.3 78 27-108 476-554 (555)
159 PRK10329 glutaredoxin-like pro 98.8 1.3E-07 2.8E-12 52.5 9.3 73 31-113 3-78 (81)
160 TIGR02194 GlrX_NrdH Glutaredox 98.8 5.8E-08 1.3E-12 52.7 7.4 67 32-107 2-71 (72)
161 cd03019 DsbA_DsbA DsbA family, 98.8 1E-07 2.2E-12 60.1 8.7 39 26-64 14-53 (178)
162 PRK15317 alkyl hydroperoxide r 98.8 2.1E-07 4.5E-12 68.0 11.2 82 26-111 115-197 (517)
163 PF13462 Thioredoxin_4: Thiore 98.7 2.4E-07 5.3E-12 57.5 10.0 81 25-110 10-162 (162)
164 PTZ00137 2-Cys peroxiredoxin; 98.7 3.3E-07 7.2E-12 61.3 10.4 87 26-112 97-225 (261)
165 PRK13189 peroxiredoxin; Provis 98.7 3.2E-07 6.8E-12 60.2 10.1 87 26-112 34-163 (222)
166 PF13848 Thioredoxin_6: Thiore 98.7 1.5E-06 3.1E-11 55.0 12.9 99 7-110 79-184 (184)
167 PF00462 Glutaredoxin: Glutare 98.7 2E-07 4.3E-12 48.7 7.3 55 31-92 1-59 (60)
168 cd03016 PRX_1cys Peroxiredoxin 98.7 3.6E-07 7.8E-12 59.2 10.0 85 28-112 26-154 (203)
169 PRK13599 putative peroxiredoxi 98.7 3.6E-07 7.9E-12 59.7 9.9 86 26-111 27-155 (215)
170 PRK13191 putative peroxiredoxi 98.7 3.4E-07 7.4E-12 59.8 9.5 86 26-111 32-160 (215)
171 KOG3170 Conserved phosducin-li 98.7 1.1E-07 2.4E-12 60.4 6.8 104 4-112 90-201 (240)
172 PF05768 DUF836: Glutaredoxin- 98.7 1.5E-07 3.2E-12 52.3 6.5 77 31-109 2-81 (81)
173 PF07449 HyaE: Hydrogenase-1 e 98.7 6.3E-07 1.4E-11 52.1 8.9 92 6-102 10-105 (107)
174 PRK10954 periplasmic protein d 98.6 3.7E-07 8.1E-12 59.3 8.9 40 26-65 36-79 (207)
175 TIGR03140 AhpF alkyl hydropero 98.6 8.3E-07 1.8E-11 64.9 11.4 82 26-111 116-198 (515)
176 PTZ00253 tryparedoxin peroxida 98.6 1E-06 2.2E-11 56.9 10.0 87 25-111 34-163 (199)
177 TIGR02190 GlrX-dom Glutaredoxi 98.6 3.5E-07 7.6E-12 50.5 6.6 60 27-93 6-68 (79)
178 PHA03050 glutaredoxin; Provisi 98.6 5.6E-07 1.2E-11 52.6 7.6 66 25-94 11-81 (108)
179 TIGR02189 GlrX-like_plant Glut 98.6 2.1E-07 4.5E-12 53.6 5.1 57 31-94 10-73 (99)
180 TIGR03143 AhpF_homolog putativ 98.5 2.1E-06 4.6E-11 63.3 10.8 102 13-116 354-458 (555)
181 cd03419 GRX_GRXh_1_2_like Glut 98.5 7.1E-07 1.5E-11 49.3 6.3 58 31-93 2-64 (82)
182 cd03029 GRX_hybridPRX5 Glutare 98.5 3.9E-06 8.5E-11 45.3 8.6 66 31-108 3-71 (72)
183 TIGR02181 GRX_bact Glutaredoxi 98.5 8.2E-07 1.8E-11 48.9 5.7 56 31-93 1-60 (79)
184 cd02066 GRX_family Glutaredoxi 98.4 1.8E-06 3.9E-11 46.0 6.8 58 31-95 2-63 (72)
185 cd03418 GRX_GRXb_1_3_like Glut 98.4 2.2E-06 4.8E-11 46.6 7.2 56 31-93 2-62 (75)
186 cd02983 P5_C P5 family, C-term 98.4 2.1E-05 4.6E-10 47.5 11.6 106 5-114 2-117 (130)
187 cd03027 GRX_DEP Glutaredoxin ( 98.4 3.4E-06 7.4E-11 45.7 7.4 57 31-94 3-63 (73)
188 PRK10824 glutaredoxin-4; Provi 98.4 3.2E-06 7E-11 49.9 6.9 86 20-112 8-104 (115)
189 KOG3171 Conserved phosducin-li 98.4 3.7E-06 8.1E-11 54.2 7.7 105 5-111 138-250 (273)
190 TIGR00365 monothiol glutaredox 98.3 7E-06 1.5E-10 47.1 7.8 51 37-94 25-79 (97)
191 KOG2603 Oligosaccharyltransfer 98.3 8.5E-06 1.8E-10 55.2 9.0 110 2-113 37-167 (331)
192 COG0695 GrxC Glutaredoxin and 98.3 8.5E-06 1.8E-10 45.1 7.6 52 31-87 3-60 (80)
193 COG1225 Bcp Peroxiredoxin [Pos 98.3 2.1E-05 4.5E-10 48.8 9.9 89 23-111 26-155 (157)
194 PF01216 Calsequestrin: Calseq 98.2 7.2E-05 1.6E-09 51.6 11.9 101 7-114 36-146 (383)
195 cd02981 PDI_b_family Protein D 98.2 5.7E-05 1.2E-09 42.9 9.3 92 8-110 2-96 (97)
196 PRK10638 glutaredoxin 3; Provi 98.1 2.2E-05 4.8E-10 43.6 6.9 58 31-95 4-65 (83)
197 cd02972 DsbA_family DsbA famil 98.1 1.6E-05 3.5E-10 44.7 6.3 58 31-88 1-91 (98)
198 cd03028 GRX_PICOT_like Glutare 98.1 2.2E-05 4.8E-10 44.4 6.5 50 37-93 21-74 (90)
199 cd03072 PDI_b'_ERp44 PDIb' fam 98.1 6.9E-05 1.5E-09 44.0 8.6 96 12-113 5-109 (111)
200 PTZ00062 glutaredoxin; Provisi 98.0 5E-05 1.1E-09 49.3 8.1 73 15-94 101-180 (204)
201 PF01323 DSBA: DSBA-like thior 98.0 0.00011 2.4E-09 46.8 8.8 35 30-64 1-37 (193)
202 COG1331 Highly conserved prote 97.9 9E-05 2E-09 55.2 8.4 82 18-99 34-128 (667)
203 PF13743 Thioredoxin_5: Thiore 97.9 6.2E-05 1.3E-09 47.8 6.6 34 33-66 2-36 (176)
204 PF00837 T4_deiodinase: Iodoth 97.8 0.00027 5.9E-09 46.6 8.3 106 4-111 81-236 (237)
205 PRK12759 bifunctional gluaredo 97.8 9.5E-05 2.1E-09 52.8 6.6 56 31-93 4-71 (410)
206 cd03073 PDI_b'_ERp72_ERp57 PDI 97.8 0.0007 1.5E-08 39.8 8.9 74 38-111 29-110 (111)
207 COG1651 DsbG Protein-disulfide 97.7 0.00037 8E-09 46.3 8.4 39 26-64 83-121 (244)
208 cd03067 PDI_b_PDIR_N PDIb fami 97.7 0.00063 1.4E-08 39.0 7.9 97 8-109 4-109 (112)
209 KOG1752 Glutaredoxin and relat 97.7 0.0004 8.7E-09 40.3 7.0 63 25-94 12-79 (104)
210 cd03031 GRX_GRX_like Glutaredo 97.2 0.0019 4E-08 39.9 6.3 58 31-95 2-73 (147)
211 cd02978 KaiB_like KaiB-like fa 97.2 0.0025 5.4E-08 34.4 5.8 59 29-87 2-62 (72)
212 PF07912 ERp29_N: ERp29, N-ter 97.2 0.017 3.6E-07 34.4 11.6 101 6-113 5-120 (126)
213 cd03066 PDI_b_Calsequestrin_mi 97.1 0.017 3.6E-07 33.3 9.8 94 7-111 2-100 (102)
214 cd03013 PRX5_like Peroxiredoxi 97.1 0.0014 3E-08 40.7 5.0 42 26-67 28-74 (155)
215 cd02974 AhpF_NTD_N Alkyl hydro 97.1 0.016 3.5E-07 33.0 10.5 84 14-111 8-93 (94)
216 COG3531 Predicted protein-disu 97.1 0.0073 1.6E-07 38.8 8.0 43 71-113 165-210 (212)
217 TIGR02742 TrbC_Ftype type-F co 96.9 0.037 8.1E-07 33.5 9.3 90 13-109 11-112 (130)
218 cd02990 UAS_FAF1 UAS family, F 96.8 0.043 9.4E-07 33.4 11.5 97 15-113 5-134 (136)
219 PRK15317 alkyl hydroperoxide r 96.8 0.037 7.9E-07 40.9 10.9 90 13-116 7-98 (517)
220 COG2761 FrnE Predicted dithiol 96.8 0.051 1.1E-06 35.9 10.1 44 72-119 176-220 (225)
221 cd03069 PDI_b_ERp57 PDIb famil 96.8 0.034 7.3E-07 32.1 8.5 92 8-111 3-103 (104)
222 PF13848 Thioredoxin_6: Thiore 96.7 0.02 4.4E-07 36.0 7.9 65 44-112 7-75 (184)
223 TIGR02654 circ_KaiB circadian 96.7 0.01 2.2E-07 33.2 5.4 76 28-104 3-82 (87)
224 PRK09301 circadian clock prote 96.7 0.0094 2E-07 34.4 5.4 82 26-108 4-89 (103)
225 TIGR03140 AhpF alkyl hydropero 96.6 0.068 1.5E-06 39.5 11.1 91 14-117 8-100 (515)
226 PF06053 DUF929: Domain of unk 96.4 0.024 5.1E-07 38.0 6.6 40 25-64 56-95 (249)
227 PF09673 TrbC_Ftype: Type-F co 96.3 0.097 2.1E-06 30.8 8.6 68 13-89 10-80 (113)
228 PF06764 DUF1223: Protein of u 96.1 0.19 4.1E-06 32.8 9.7 79 31-114 2-100 (202)
229 cd02977 ArsC_family Arsenate R 95.9 0.013 2.9E-07 33.8 3.3 33 32-69 2-34 (105)
230 COG0450 AhpC Peroxiredoxin [Po 95.8 0.27 5.8E-06 31.7 9.2 87 26-112 32-161 (194)
231 KOG2640 Thioredoxin [Function 95.8 0.0042 9.1E-08 42.5 1.1 86 27-113 76-163 (319)
232 cd03041 GST_N_2GST_N GST_N fam 95.8 0.1 2.2E-06 28.2 6.5 69 32-110 3-75 (77)
233 cd03040 GST_N_mPGES2 GST_N fam 95.8 0.13 2.8E-06 27.6 7.1 71 31-112 2-76 (77)
234 COG4545 Glutaredoxin-related p 95.6 0.057 1.2E-06 29.3 4.8 57 32-93 5-77 (85)
235 TIGR01617 arsC_related transcr 95.6 0.033 7.1E-07 32.9 4.4 34 32-70 2-35 (117)
236 cd03060 GST_N_Omega_like GST_N 95.6 0.054 1.2E-06 28.8 4.8 57 33-93 3-60 (71)
237 KOG2507 Ubiquitin regulatory p 95.6 0.29 6.3E-06 35.3 9.4 96 15-111 7-110 (506)
238 cd03036 ArsC_like Arsenate Red 95.2 0.041 9E-07 32.2 3.8 33 32-69 2-34 (111)
239 PHA03075 glutaredoxin-like pro 95.0 0.062 1.3E-06 31.6 4.1 30 28-57 2-31 (123)
240 PF07689 KaiB: KaiB domain; I 95.0 0.012 2.6E-07 32.7 1.0 53 33-85 2-56 (82)
241 cd00570 GST_N_family Glutathio 94.8 0.067 1.4E-06 27.5 3.8 52 33-87 3-56 (71)
242 PRK01655 spxA transcriptional 94.8 0.07 1.5E-06 32.2 4.2 33 31-68 2-34 (131)
243 COG0386 BtuE Glutathione perox 94.8 0.57 1.2E-05 29.2 8.5 88 25-113 23-161 (162)
244 PF04592 SelP_N: Selenoprotein 94.7 0.37 8.1E-06 32.0 7.5 43 25-67 24-71 (238)
245 cd03037 GST_N_GRX2 GST_N famil 94.6 0.23 5E-06 26.2 5.5 51 33-86 3-53 (71)
246 COG5429 Uncharacterized secret 94.6 0.22 4.7E-06 33.1 6.1 86 26-114 40-143 (261)
247 KOG1651 Glutathione peroxidase 94.5 0.35 7.5E-06 30.5 6.6 90 24-113 31-170 (171)
248 COG0278 Glutaredoxin-related p 94.4 0.5 1.1E-05 27.2 6.8 73 18-94 6-83 (105)
249 cd03051 GST_N_GTT2_like GST_N 94.4 0.18 4E-06 26.5 4.9 52 33-87 3-58 (74)
250 COG3019 Predicted metal-bindin 94.4 0.67 1.5E-05 28.4 8.1 76 27-112 24-104 (149)
251 KOG2792 Putative cytochrome C 93.9 0.52 1.1E-05 31.9 7.0 90 25-114 137-277 (280)
252 cd03068 PDI_b_ERp72 PDIb famil 93.9 0.69 1.5E-05 26.9 10.1 93 7-110 2-106 (107)
253 PRK13730 conjugal transfer pil 93.9 1.1 2.4E-05 29.2 8.3 34 68-102 150-184 (212)
254 cd03032 ArsC_Spx Arsenate Redu 93.9 0.21 4.5E-06 29.4 4.7 34 31-69 2-35 (115)
255 PF06953 ArsD: Arsenical resis 93.8 0.83 1.8E-05 27.4 7.6 67 45-115 29-105 (123)
256 cd03025 DsbA_FrnE_like DsbA fa 93.5 0.2 4.4E-06 31.7 4.5 27 31-57 3-29 (193)
257 cd03035 ArsC_Yffb Arsenate Red 93.4 0.13 2.7E-06 29.9 3.2 33 32-69 2-34 (105)
258 COG1999 Uncharacterized protei 93.3 1.5 3.2E-05 28.7 10.3 90 24-113 64-205 (207)
259 PF04134 DUF393: Protein of un 93.2 0.2 4.2E-06 29.2 3.8 57 34-91 2-61 (114)
260 PF02630 SCO1-SenC: SCO1/SenC; 93.0 0.49 1.1E-05 29.9 5.6 44 25-68 50-98 (174)
261 cd03045 GST_N_Delta_Epsilon GS 92.7 0.46 9.9E-06 25.1 4.6 52 32-86 2-57 (74)
262 PRK12559 transcriptional regul 92.6 0.26 5.7E-06 29.8 3.9 32 31-67 2-33 (131)
263 COG3634 AhpF Alkyl hydroperoxi 92.2 1.6 3.4E-05 31.3 7.6 81 26-110 115-196 (520)
264 PF13417 GST_N_3: Glutathione 91.9 1.1 2.4E-05 23.9 8.5 70 34-113 2-72 (75)
265 COG3011 Predicted thiol-disulf 91.8 1.4 3.1E-05 26.9 6.2 69 26-95 5-75 (137)
266 cd03024 DsbA_FrnE DsbA family, 91.7 0.31 6.6E-06 31.2 3.7 34 71-108 166-200 (201)
267 cd03059 GST_N_SspA GST_N famil 91.7 0.27 5.7E-06 25.9 2.9 51 32-85 2-53 (73)
268 cd03055 GST_N_Omega GST_N fami 91.0 1.1 2.4E-05 24.8 5.1 52 32-86 20-72 (89)
269 cd03074 PDI_b'_Calsequestrin_C 90.5 2.3 5E-05 24.9 10.1 97 13-111 8-119 (120)
270 PRK13344 spxA transcriptional 90.3 0.64 1.4E-05 28.2 3.8 32 31-67 2-33 (132)
271 PF07315 DUF1462: Protein of u 90.1 2.2 4.7E-05 24.1 7.6 69 37-109 7-93 (93)
272 cd03022 DsbA_HCCA_Iso DsbA fam 89.9 0.55 1.2E-05 29.7 3.6 33 71-108 158-191 (192)
273 PF00255 GSHPx: Glutathione pe 89.7 2.2 4.7E-05 25.0 5.6 43 25-68 19-63 (108)
274 PF06491 Disulph_isomer: Disul 89.7 3.1 6.8E-05 25.2 9.6 102 5-112 16-132 (136)
275 PF13778 DUF4174: Domain of un 89.3 3.1 6.7E-05 24.6 8.6 86 26-111 9-111 (118)
276 PF09695 YtfJ_HI0045: Bacteria 87.5 5.2 0.00011 25.1 9.2 88 24-111 34-157 (160)
277 PF11287 DUF3088: Protein of u 87.1 1.2 2.7E-05 26.1 3.4 75 38-112 23-107 (112)
278 PRK00366 ispG 4-hydroxy-3-meth 85.4 5.1 0.00011 28.5 6.3 85 26-112 263-357 (360)
279 PF05988 DUF899: Bacterial pro 84.9 6.7 0.00015 25.8 6.2 75 25-99 66-175 (211)
280 cd03056 GST_N_4 GST_N family, 84.7 3.3 7E-05 21.5 4.2 56 33-93 3-62 (73)
281 KOG1422 Intracellular Cl- chan 84.6 9.3 0.0002 25.2 7.3 70 37-116 19-89 (221)
282 cd03021 DsbA_GSTK DsbA family, 84.3 1.5 3.3E-05 28.4 3.2 36 73-108 172-208 (209)
283 COG5494 Predicted thioredoxin/ 84.1 6.9 0.00015 25.9 6.0 74 30-110 12-86 (265)
284 PF09822 ABC_transp_aux: ABC-t 84.1 11 0.00023 25.5 12.4 62 17-80 17-88 (271)
285 cd03025 DsbA_FrnE_like DsbA fa 83.6 1.6 3.5E-05 27.6 3.1 21 71-91 160-180 (193)
286 cd03052 GST_N_GDAP1 GST_N fami 82.9 5 0.00011 21.3 4.5 57 32-93 2-62 (73)
287 cd03022 DsbA_HCCA_Iso DsbA fam 82.5 2.7 5.8E-05 26.5 3.8 32 33-64 3-35 (192)
288 cd03024 DsbA_FrnE DsbA family, 80.6 3.7 7.9E-05 26.2 4.0 25 33-57 3-27 (201)
289 cd03033 ArsC_15kD Arsenate Red 79.5 3 6.5E-05 24.5 3.0 32 31-67 2-33 (113)
290 TIGR00014 arsC arsenate reduct 78.6 3.5 7.6E-05 24.2 3.1 32 32-68 2-33 (114)
291 KOG1364 Predicted ubiquitin re 77.8 4.3 9.3E-05 28.7 3.7 55 59-113 133-190 (356)
292 PF04551 GcpE: GcpE protein; 77.1 4.9 0.00011 28.6 3.8 84 26-111 263-358 (359)
293 PF12617 LdpA_C: Iron-Sulfur b 76.3 12 0.00025 24.2 5.1 60 40-99 18-83 (183)
294 cd03034 ArsC_ArsC Arsenate Red 75.9 4.7 0.0001 23.5 3.1 32 32-68 2-33 (112)
295 KOG0911 Glutaredoxin-related p 75.1 20 0.00043 23.9 6.0 74 16-94 128-206 (227)
296 cd03021 DsbA_GSTK DsbA family, 74.2 8.7 0.00019 24.9 4.3 37 30-66 2-39 (209)
297 COG0821 gcpE 1-hydroxy-2-methy 74.1 21 0.00045 25.4 6.2 78 38-115 263-354 (361)
298 cd03053 GST_N_Phi GST_N family 73.8 11 0.00024 19.7 4.9 52 32-86 3-58 (76)
299 PF14424 Toxin-deaminase: The 73.6 18 0.00038 22.0 5.7 27 36-65 105-131 (133)
300 KOG0912 Thiol-disulfide isomer 73.4 28 0.0006 24.7 6.6 88 25-112 225-319 (375)
301 KOG0868 Glutathione S-transfer 72.2 1.8 3.9E-05 27.9 0.7 62 26-94 3-69 (217)
302 PF05176 ATP-synt_10: ATP10 pr 71.7 29 0.00062 23.6 8.3 39 71-109 205-247 (252)
303 cd03049 GST_N_3 GST_N family, 71.0 11 0.00023 19.7 3.6 57 33-91 3-60 (73)
304 PRK09481 sspA stringent starva 70.2 22 0.00049 22.9 5.6 61 27-92 7-68 (211)
305 cd03058 GST_N_Tau GST_N family 69.8 14 0.0003 19.3 4.7 51 33-86 3-55 (74)
306 TIGR02743 TraW type-F conjugat 69.1 6.5 0.00014 25.7 2.8 23 67-89 172-194 (202)
307 cd03030 GRX_SH3BGR Glutaredoxi 66.5 21 0.00046 20.1 4.8 45 48-95 21-73 (92)
308 KOG0855 Alkyl hydroperoxide re 66.5 32 0.00069 22.1 7.9 64 25-90 88-185 (211)
309 PF03960 ArsC: ArsC family; I 66.3 15 0.00032 21.2 3.8 31 34-69 1-31 (110)
310 PRK10853 putative reductase; P 66.2 9.8 0.00021 22.5 3.0 32 31-67 2-33 (118)
311 COG1393 ArsC Arsenate reductas 66.1 6.1 0.00013 23.4 2.1 25 31-55 3-27 (117)
312 PRK13738 conjugal transfer pil 65.9 11 0.00023 24.9 3.4 28 67-94 170-198 (209)
313 TIGR03759 conj_TIGR03759 integ 65.5 27 0.00059 22.9 5.0 37 27-66 108-144 (200)
314 cd03044 GST_N_EF1Bgamma GST_N 65.3 16 0.00036 19.2 3.6 52 33-87 3-57 (75)
315 COG3411 Ferredoxin [Energy pro 64.6 19 0.00042 19.0 4.3 31 81-114 17-47 (64)
316 PF00352 TBP: Transcription fa 63.4 22 0.00048 19.6 4.0 31 81-113 49-80 (86)
317 PF04908 SH3BGR: SH3-binding, 62.6 17 0.00037 20.9 3.4 68 32-99 3-83 (99)
318 cd03376 TPP_PFOR_porB_like Thi 60.5 48 0.001 22.1 6.5 30 8-37 171-200 (235)
319 TIGR01616 nitro_assoc nitrogen 60.4 19 0.00041 21.6 3.5 31 31-66 3-33 (126)
320 PRK10026 arsenate reductase; P 60.1 18 0.00039 22.3 3.4 31 31-66 4-34 (141)
321 PF08806 Sep15_SelM: Sep15/Sel 60.1 18 0.00039 19.8 3.1 33 80-112 41-76 (78)
322 PF07511 DUF1525: Protein of u 58.4 35 0.00075 20.3 4.3 16 73-88 76-91 (114)
323 COG2101 SPT15 TATA-box binding 58.3 28 0.0006 22.4 4.1 30 83-114 55-85 (185)
324 cd03375 TPP_OGFOR Thiamine pyr 58.2 20 0.00044 23.0 3.6 28 9-36 156-183 (193)
325 cd03050 GST_N_Theta GST_N fami 58.1 26 0.00056 18.3 4.4 55 33-92 3-61 (76)
326 PRK10387 glutaredoxin 2; Provi 58.1 37 0.00081 21.6 4.9 50 34-86 4-53 (210)
327 cd02010 TPP_ALS Thiamine pyrop 57.1 27 0.00059 22.0 4.1 31 6-36 139-169 (177)
328 cd02015 TPP_AHAS Thiamine pyro 57.1 31 0.00067 21.9 4.3 31 7-37 144-174 (186)
329 KOG0095 GTPase Rab30, small G 56.6 42 0.00091 21.2 4.6 61 16-77 69-135 (213)
330 TIGR01287 nifH nitrogenase iro 56.0 13 0.00028 25.1 2.6 58 19-78 213-270 (275)
331 KOG0852 Alkyl hydroperoxide re 55.7 54 0.0012 21.2 8.1 87 25-111 31-160 (196)
332 COG2077 Tpx Peroxiredoxin [Pos 55.7 49 0.0011 20.8 6.1 43 25-67 42-85 (158)
333 TIGR00595 priA primosomal prot 55.4 88 0.0019 23.6 7.7 23 46-68 272-294 (505)
334 cd02003 TPP_IolD Thiamine pyro 55.0 29 0.00064 22.4 4.0 30 7-36 154-183 (205)
335 TIGR02182 GRXB Glutaredoxin, G 53.9 47 0.001 21.5 4.9 54 34-91 3-56 (209)
336 cd03061 GST_N_CLIC GST_N famil 53.7 39 0.00085 19.0 7.7 67 37-113 20-87 (91)
337 PF03227 GILT: Gamma interfero 52.8 44 0.00095 19.3 4.4 21 31-51 3-24 (108)
338 PF11072 DUF2859: Protein of u 51.8 20 0.00044 22.1 2.7 18 70-87 121-138 (142)
339 KOG2244 Highly conserved prote 51.8 11 0.00024 28.7 1.8 73 17-89 102-187 (786)
340 PRK06163 hypothetical protein; 51.7 33 0.00072 22.4 3.8 31 8-38 144-174 (202)
341 PF05679 CHGN: Chondroitin N-a 50.6 1.1E+02 0.0023 23.1 7.6 57 26-82 280-340 (499)
342 KOG1731 FAD-dependent sulfhydr 50.3 25 0.00054 26.9 3.4 59 58-117 215-274 (606)
343 PF14639 YqgF: Holliday-juncti 49.6 47 0.001 20.6 4.1 34 23-57 58-91 (150)
344 PF14097 SpoVAE: Stage V sporu 49.5 21 0.00046 22.8 2.5 32 3-37 31-62 (180)
345 PTZ00151 translationally contr 48.9 19 0.00041 23.0 2.3 43 50-92 123-168 (172)
346 PF02702 KdpD: Osmosensitive K 48.8 78 0.0017 21.0 7.9 71 25-95 2-73 (211)
347 PF14437 MafB19-deam: MafB19-l 48.7 65 0.0014 20.1 5.8 44 17-63 89-134 (146)
348 TIGR03757 conj_TIGR03757 integ 48.6 56 0.0012 19.4 4.2 17 73-89 77-93 (113)
349 TIGR03765 ICE_PFL_4695 integra 46.5 23 0.00049 20.7 2.2 18 70-87 83-100 (105)
350 PF11317 DUF3119: Protein of u 46.5 49 0.0011 19.7 3.6 34 79-112 81-115 (116)
351 cd02005 TPP_PDC_IPDC Thiamine 46.3 73 0.0016 20.2 4.8 31 6-36 142-173 (183)
352 cd07973 Spt4 Transcription elo 45.6 50 0.0011 19.0 3.5 68 34-110 18-93 (98)
353 cd04518 TBP_archaea archaeal T 45.1 70 0.0015 20.4 4.5 29 83-113 140-169 (174)
354 PF02401 LYTB: LytB protein; 45.1 82 0.0018 21.9 5.1 94 15-112 169-278 (281)
355 cd02013 TPP_Xsc_like Thiamine 44.9 61 0.0013 20.8 4.3 31 7-37 146-179 (196)
356 cd03062 TRX_Fd_Sucrase TRX-lik 44.3 59 0.0013 18.4 4.1 32 80-114 52-85 (97)
357 cd03038 GST_N_etherase_LigE GS 44.3 26 0.00056 18.8 2.2 66 36-110 13-81 (84)
358 TIGR03439 methyl_EasF probable 44.1 65 0.0014 22.7 4.6 38 29-69 78-115 (319)
359 PRK08573 phosphomethylpyrimidi 44.0 1.3E+02 0.0028 22.2 7.8 55 58-112 376-447 (448)
360 KOG3286 Selenoprotein T [Gener 43.8 95 0.0021 20.6 5.2 72 29-100 70-144 (226)
361 cd04516 TBP_eukaryotes eukaryo 43.5 77 0.0017 20.3 4.5 28 83-112 49-77 (174)
362 cd03054 GST_N_Metaxin GST_N fa 43.5 48 0.001 17.1 4.2 41 37-86 14-54 (72)
363 PRK15113 glutathione S-transfe 43.0 90 0.0019 20.1 4.9 55 29-86 4-64 (214)
364 PRK00394 transcription factor; 42.1 82 0.0018 20.2 4.5 29 83-113 141-170 (179)
365 PF13407 Peripla_BP_4: Peripla 41.8 98 0.0021 20.2 5.9 83 20-104 20-107 (257)
366 cd02014 TPP_POX Thiamine pyrop 41.3 78 0.0017 19.9 4.3 27 9-35 145-171 (178)
367 PRK09628 oorB 2-oxoglutarate-a 41.2 44 0.00095 23.1 3.3 30 8-37 172-201 (277)
368 PF07700 HNOB: Heme NO binding 41.1 90 0.0019 19.6 5.2 41 26-66 126-168 (171)
369 TIGR00862 O-ClC intracellular 41.1 1.1E+02 0.0024 20.5 6.2 66 37-112 17-83 (236)
370 cd00652 TBP_TLF TATA box bindi 40.5 87 0.0019 19.9 4.4 29 83-113 141-170 (174)
371 PF10865 DUF2703: Domain of un 40.5 81 0.0018 18.9 5.0 53 37-94 13-73 (120)
372 TIGR00612 ispG_gcpE 1-hydroxy- 40.2 1E+02 0.0022 22.1 4.9 72 26-99 254-335 (346)
373 PF11453 DUF2950: Protein of u 39.8 47 0.001 22.9 3.2 40 74-113 225-264 (271)
374 PLN00062 TATA-box-binding prot 39.7 92 0.002 20.0 4.4 29 83-113 140-169 (179)
375 cd04517 TLF TBP-like factors ( 39.7 98 0.0021 19.8 4.5 28 83-112 49-77 (174)
376 COG1519 KdtA 3-deoxy-D-manno-o 39.3 1.6E+02 0.0034 21.9 7.1 36 30-65 50-85 (419)
377 cd06403 PB1_Par6 The PB1 domai 39.2 54 0.0012 18.1 2.8 20 3-22 49-68 (80)
378 PF09936 Methyltrn_RNA_4: SAM- 38.8 49 0.0011 21.4 3.0 25 12-39 120-144 (185)
379 PF13409 GST_N_2: Glutathione 38.1 61 0.0013 16.7 5.0 52 38-91 1-55 (70)
380 PRK11869 2-oxoacid ferredoxin 37.2 84 0.0018 21.8 4.2 31 10-41 166-196 (280)
381 cd02006 TPP_Gcl Thiamine pyrop 37.0 86 0.0019 20.2 4.1 28 8-35 161-192 (202)
382 PF01216 Calsequestrin: Calseq 36.7 1.7E+02 0.0036 21.3 12.8 105 6-113 250-369 (383)
383 PRK11752 putative S-transferas 36.4 1.4E+02 0.0029 20.2 5.9 56 33-88 46-108 (264)
384 cd02018 TPP_PFOR Thiamine pyro 36.4 63 0.0014 21.6 3.4 29 9-37 174-203 (237)
385 cd06353 PBP1_BmpA_Med_like Per 36.1 1.3E+02 0.0029 20.1 5.2 48 12-66 42-89 (258)
386 KOG3160 Gamma-interferon induc 35.3 34 0.00073 22.8 2.0 31 25-55 37-68 (220)
387 cd03371 TPP_PpyrDC Thiamine py 34.9 66 0.0014 20.6 3.3 29 8-36 134-162 (188)
388 PRK08351 DNA-directed RNA poly 34.3 39 0.00085 17.6 1.7 40 36-83 15-54 (61)
389 TIGR00550 nadA quinolinate syn 33.6 1.2E+02 0.0025 21.4 4.5 45 24-68 71-117 (310)
390 COG4752 Uncharacterized protei 32.7 64 0.0014 20.3 2.7 25 14-41 123-147 (190)
391 PF02645 DegV: Uncharacterised 32.4 74 0.0016 21.7 3.4 43 69-112 13-55 (280)
392 COG1839 Uncharacterized conser 32.3 1.3E+02 0.0027 18.8 3.9 38 78-115 37-79 (162)
393 cd03039 GST_N_Sigma_like GST_N 32.1 78 0.0017 16.2 3.4 55 34-93 4-60 (72)
394 KOG4498 Uncharacterized conser 31.6 1.1E+02 0.0025 20.0 3.8 40 25-64 49-90 (197)
395 PF07894 DUF1669: Protein of u 31.2 1.9E+02 0.004 20.3 6.6 64 26-89 116-183 (284)
396 KOG2456 Aldehyde dehydrogenase 31.2 1.2E+02 0.0026 22.5 4.2 34 5-38 338-371 (477)
397 PF14421 LmjF365940-deam: A di 30.9 81 0.0018 20.5 3.0 28 38-68 156-183 (193)
398 COG0028 IlvB Thiamine pyrophos 30.8 95 0.0021 23.7 3.9 34 5-38 499-532 (550)
399 cd03042 GST_N_Zeta GST_N famil 30.2 83 0.0018 15.9 3.3 50 34-86 4-57 (73)
400 PRK05858 hypothetical protein; 30.1 1E+02 0.0023 23.2 4.1 33 5-37 498-530 (542)
401 PRK13815 ribosome-binding fact 30.1 1.3E+02 0.0028 18.0 4.1 41 71-118 76-117 (122)
402 cd03081 TRX_Fd_NuoE_FDH_gamma 30.0 98 0.0021 16.7 3.3 26 80-110 54-79 (80)
403 PHA02131 hypothetical protein 29.9 86 0.0019 16.0 3.4 28 78-105 26-53 (70)
404 COG1198 PriA Primosomal protei 29.4 1.1E+02 0.0024 24.5 4.1 33 37-69 476-517 (730)
405 COG4312 Uncharacterized protei 29.3 1.8E+02 0.004 19.6 4.6 42 26-67 73-121 (247)
406 KOG4163 Prolyl-tRNA synthetase 29.1 69 0.0015 23.9 2.8 34 4-45 464-497 (551)
407 PF04900 Fcf1: Fcf1; InterPro 28.4 1.1E+02 0.0025 17.2 3.2 40 46-89 54-94 (101)
408 PRK01045 ispH 4-hydroxy-3-meth 28.3 2.2E+02 0.0047 20.1 6.5 24 89-112 255-279 (298)
409 cd01840 SGNH_hydrolase_yrhL_li 28.3 1.4E+02 0.0031 18.0 5.1 28 26-57 50-77 (150)
410 PRK11865 pyruvate ferredoxin o 28.1 1.2E+02 0.0027 21.2 3.9 58 9-67 183-244 (299)
411 PF09547 Spore_IV_A: Stage IV 28.0 2E+02 0.0043 21.7 4.9 48 19-68 172-219 (492)
412 cd03043 GST_N_1 GST_N family, 27.9 99 0.0021 16.0 3.9 51 37-92 8-61 (73)
413 COG0266 Nei Formamidopyrimidin 27.9 17 0.00037 25.0 -0.3 6 38-43 267-272 (273)
414 PRK09107 acetolactate synthase 27.9 1.2E+02 0.0025 23.4 4.0 32 6-37 523-554 (595)
415 COG3581 Uncharacterized protei 27.9 2.3E+02 0.0049 21.0 5.1 38 29-66 71-112 (420)
416 PF09363 XFP_C: XFP C-terminal 27.3 72 0.0016 21.0 2.5 35 12-58 88-122 (203)
417 COG4837 Uncharacterized protei 27.0 1.3E+02 0.0029 17.3 5.8 71 37-111 14-102 (106)
418 TIGR03107 glu_aminopep glutamy 26.8 2.4E+02 0.0053 20.2 7.2 81 30-112 252-338 (350)
419 PRK05778 2-oxoglutarate ferred 26.6 1.3E+02 0.0028 21.1 3.8 34 9-43 175-208 (301)
420 TIGR02177 PorB_KorB 2-oxoacid: 26.6 1.2E+02 0.0025 21.2 3.5 35 10-45 159-193 (287)
421 PF14430 Imm1: Immunity protei 26.5 1.5E+02 0.0032 17.6 3.8 106 4-115 9-116 (127)
422 PF10120 Aldolase_2: Putative 26.5 1.4E+02 0.003 19.0 3.6 53 58-110 102-169 (170)
423 PRK11867 2-oxoglutarate ferred 26.3 1E+02 0.0022 21.4 3.2 28 10-37 175-202 (286)
424 cd02980 TRX_Fd_family Thioredo 26.2 1.1E+02 0.0023 15.9 3.7 29 79-110 48-76 (77)
425 PF08671 SinI: Anti-repressor 26.1 74 0.0016 14.0 1.9 14 97-110 15-28 (30)
426 PLN02378 glutathione S-transfe 26.0 1.9E+02 0.0041 18.7 4.3 47 37-86 18-65 (213)
427 PLN02470 acetolactate synthase 25.8 1.5E+02 0.0032 22.7 4.2 31 7-37 527-557 (585)
428 PF14307 Glyco_tran_WbsX: Glyc 25.6 2.1E+02 0.0046 20.3 4.7 40 26-65 157-198 (345)
429 PF09654 DUF2396: Protein of u 25.4 27 0.00058 21.5 0.2 14 37-50 7-20 (161)
430 TIGR00762 DegV EDD domain prot 25.4 1.7E+02 0.0037 19.9 4.2 41 69-110 12-52 (275)
431 TIGR02652 conserved hypothetic 25.4 28 0.0006 21.5 0.3 14 37-50 10-23 (163)
432 cd03071 PDI_b'_NRX PDIb' famil 25.3 1.6E+02 0.0034 17.5 8.3 87 26-112 13-115 (116)
433 cd06538 CIDE_N_FSP27 CIDE_N do 25.3 1.3E+02 0.0029 16.6 3.1 25 71-95 29-53 (79)
434 PLN02402 cytidine deaminase 25.3 1.3E+02 0.0029 21.2 3.6 22 28-49 93-114 (303)
435 PF10114 PocR: Sensory domain 25.2 58 0.0013 20.2 1.8 32 67-98 8-40 (173)
436 cd03076 GST_N_Pi GST_N family, 25.1 1.1E+02 0.0024 15.8 3.6 54 34-92 5-59 (73)
437 cd06537 CIDE_N_B CIDE_N domain 25.1 1.3E+02 0.0029 16.7 3.0 25 71-95 29-53 (81)
438 COG1628 Endonuclease V homolog 25.1 1.3E+02 0.0029 19.5 3.3 29 58-89 77-105 (185)
439 COG1744 Med Uncharacterized AB 25.0 1.3E+02 0.0027 21.5 3.5 48 12-66 82-129 (345)
440 TIGR03414 ABC_choline_bnd chol 24.9 1.5E+02 0.0032 20.5 3.8 26 13-38 157-182 (290)
441 PLN02817 glutathione dehydroge 24.5 2.1E+02 0.0045 19.6 4.4 47 37-86 71-118 (265)
442 PRK14811 formamidopyrimidine-D 24.5 16 0.00035 25.0 -0.9 10 37-46 256-265 (269)
443 PRK07418 acetolactate synthase 24.5 1.4E+02 0.0031 23.0 4.0 33 5-37 527-559 (616)
444 PRK09702 PTS system arbutin-sp 24.5 1.9E+02 0.0042 18.2 4.6 28 88-115 122-149 (161)
445 PHA02151 hypothetical protein 24.4 45 0.00097 21.1 1.1 12 29-40 205-216 (217)
446 TIGR03254 oxalate_oxc oxalyl-C 24.3 1.5E+02 0.0032 22.5 4.0 30 7-36 508-537 (554)
447 PF02591 DUF164: Putative zinc 24.2 82 0.0018 15.7 1.9 31 14-47 3-33 (56)
448 PRK11119 proX glycine betaine 24.2 1.2E+02 0.0026 21.5 3.3 27 12-38 186-212 (331)
449 PRK06048 acetolactate synthase 24.1 1.6E+02 0.0035 22.3 4.2 31 7-37 508-538 (561)
450 COG3054 Predicted transcriptio 24.1 2E+02 0.0043 18.3 5.8 38 74-111 139-179 (184)
451 PF11858 DUF3378: Domain of un 24.1 1.4E+02 0.003 16.4 3.2 24 83-108 41-64 (81)
452 PRK07524 hypothetical protein; 23.8 1.9E+02 0.0041 21.8 4.5 31 6-36 498-528 (535)
453 PF10262 Rdx: Rdx family; Int 23.7 1.3E+02 0.0028 16.0 7.5 65 33-110 5-75 (76)
454 cd03048 GST_N_Ure2p_like GST_N 23.7 1.3E+02 0.0027 15.8 3.5 50 34-86 4-57 (81)
455 PRK11866 2-oxoacid ferredoxin 23.6 1.4E+02 0.0031 20.6 3.5 27 11-37 166-192 (279)
456 PRK08978 acetolactate synthase 23.5 1.8E+02 0.0039 22.0 4.3 32 6-37 494-525 (548)
457 COG1125 OpuBA ABC-type proline 23.2 1.2E+02 0.0027 21.2 3.0 90 26-116 25-122 (309)
458 PF01116 F_bP_aldolase: Fructo 23.1 2.7E+02 0.0058 19.4 6.8 50 8-57 22-73 (287)
459 PRK08617 acetolactate synthase 23.1 1.9E+02 0.0041 21.9 4.3 32 6-37 505-536 (552)
460 PRK12411 cytidine deaminase; P 23.1 47 0.001 20.1 1.0 13 37-49 84-96 (132)
461 PRK08527 acetolactate synthase 23.0 1.8E+02 0.004 22.1 4.3 29 8-36 509-537 (563)
462 PF11551 Omp28: Outer membrane 22.9 28 0.00061 22.4 0.0 25 68-92 7-31 (184)
463 PF00838 TCTP: Translationally 22.9 27 0.00058 22.1 -0.1 45 46-91 115-163 (165)
464 TIGR03846 sulfopy_beta sulfopy 22.8 1.8E+02 0.0039 18.5 3.7 26 10-36 130-155 (181)
465 PF06220 zf-U1: U1 zinc finger 22.6 25 0.00055 16.3 -0.2 10 37-46 4-13 (38)
466 cd00947 TBP_aldolase_IIB Tagat 22.6 2.7E+02 0.0059 19.3 6.8 50 8-57 18-69 (276)
467 PRK08611 pyruvate oxidase; Pro 22.6 1.7E+02 0.0036 22.4 4.0 32 6-37 499-530 (576)
468 cd06396 PB1_NBR1 The PB1 domai 22.5 1.5E+02 0.0033 16.4 4.8 15 42-56 56-70 (81)
469 PF15379 DUF4606: Domain of un 22.5 89 0.0019 18.2 2.0 16 36-51 31-46 (104)
470 TIGR02418 acolac_catab acetola 22.4 1.7E+02 0.0038 22.0 4.0 31 6-36 499-529 (539)
471 PRK06393 rpoE DNA-directed RNA 22.3 59 0.0013 17.2 1.1 40 36-83 17-56 (64)
472 TIGR03393 indolpyr_decarb indo 21.9 1.8E+02 0.0038 22.0 4.0 31 7-37 497-527 (539)
473 cd05992 PB1 The PB1 domain is 21.8 1.4E+02 0.003 15.7 3.9 21 3-23 48-68 (81)
474 PRK08322 acetolactate synthase 21.7 2E+02 0.0042 21.8 4.2 30 7-36 498-527 (547)
475 PRK09124 pyruvate dehydrogenas 21.7 1.8E+02 0.0039 22.2 4.0 30 7-36 500-529 (574)
476 PF07351 DUF1480: Protein of u 21.6 74 0.0016 17.4 1.4 28 58-85 25-56 (80)
477 PF06180 CbiK: Cobalt chelatas 21.6 1.7E+02 0.0038 20.0 3.6 38 29-66 3-41 (262)
478 COG3697 CitX Phosphoribosyl-de 21.6 1.6E+02 0.0036 18.9 3.2 79 37-115 95-176 (182)
479 smart00592 BRK domain in trans 21.5 95 0.0021 15.0 1.7 25 88-112 12-36 (45)
480 PRK13817 ribosome-binding fact 21.5 1.9E+02 0.0042 17.1 4.1 36 71-113 75-111 (119)
481 KOG4277 Uncharacterized conser 21.5 3.2E+02 0.0068 19.6 8.9 80 25-111 151-230 (468)
482 PF11238 DUF3039: Protein of u 21.5 1.4E+02 0.003 15.4 2.6 23 25-47 22-55 (58)
483 PRK07064 hypothetical protein; 21.3 1.8E+02 0.004 21.9 4.0 32 6-37 497-528 (544)
484 KOG3029 Glutathione S-transfer 21.2 3.1E+02 0.0067 19.4 6.7 71 30-113 90-162 (370)
485 COG0295 Cdd Cytidine deaminase 21.1 2.1E+02 0.0046 17.5 3.7 6 39-44 88-93 (134)
486 TIGR03521 GldG gliding-associa 21.0 3.9E+02 0.0085 20.5 10.7 65 15-82 38-116 (552)
487 COG5270 PUA domain (predicted 21.0 36 0.00079 22.1 0.2 19 26-44 4-22 (202)
488 PRK09259 putative oxalyl-CoA d 20.9 2.1E+02 0.0045 21.8 4.2 29 8-36 517-545 (569)
489 PF05184 SapB_1: Saposin-like 20.9 71 0.0015 14.2 1.2 18 38-55 3-20 (39)
490 KOG1371 UDP-glucose 4-epimeras 20.8 3.3E+02 0.0072 19.6 5.1 59 25-89 25-86 (343)
491 KOG0833 Cytidine deaminase [Nu 20.7 72 0.0016 20.4 1.5 17 35-51 101-117 (173)
492 PRK14810 formamidopyrimidine-D 20.6 28 0.0006 23.9 -0.4 6 38-43 266-271 (272)
493 PRK09195 gatY tagatose-bisphos 20.5 3.1E+02 0.0067 19.1 7.0 50 8-57 23-74 (284)
494 PRK05578 cytidine deaminase; V 20.3 59 0.0013 19.7 1.0 26 37-67 84-109 (131)
495 KOG0324 Uncharacterized conser 20.2 65 0.0014 21.4 1.2 44 40-83 85-131 (214)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=144.26 Aligned_cols=105 Identities=31% Similarity=0.669 Sum_probs=97.7
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcccccEE
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTF 84 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~Pt~ 84 (123)
....+.+.++|++.+. .++.||+|.||++||++|+.+.|.++++...|.| +.++.+|+|++.+++.+|+|..+||+
T Consensus 43 ~~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred ccccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEE
Confidence 3556678889998885 5799999999999999999999999999999987 99999999999999999999999999
Q ss_pred EEecCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 85 VLTKEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 85 ~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
++|+||+...++.|. +.+.++++|++.++
T Consensus 120 lvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999999999 89999999999875
No 2
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.94 E-value=9.9e-26 Score=131.29 Aligned_cols=97 Identities=28% Similarity=0.429 Sum_probs=88.4
Q ss_pred ehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccch---hHHHhcCcccccEEEEec
Q 033251 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELK---SVAEEWAVEAMPTFVLTK 88 (123)
Q Consensus 12 ~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~---~~~~~~~i~~~Pt~~~~~ 88 (123)
+.++|++.+.. .+++++||.||++||++|+.+.|.++++++.++++.|+.||++++. +++++|+|.++||+++++
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 56788888865 4699999999999999999999999999999988999999999874 789999999999999999
Q ss_pred CCeEEEEEccCCHHHHHHHHHH
Q 033251 89 EGKVLERIVGAKKDELQLAVEK 110 (123)
Q Consensus 89 ~g~~~~~~~g~~~~~l~~~l~~ 110 (123)
+|+.+.++.|..+++|++.+..
T Consensus 80 ~G~~v~~~~G~~~~~l~~~~~~ 101 (103)
T cd02985 80 DGEKIHEEEGIGPDELIGDVLY 101 (103)
T ss_pred CCeEEEEEeCCCHHHHHHHHHh
Confidence 9999999999999888888764
No 3
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-25 Score=130.21 Aligned_cols=103 Identities=50% Similarity=0.839 Sum_probs=92.0
Q ss_pred EEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEec
Q 033251 9 SCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTK 88 (123)
Q Consensus 9 ~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~ 88 (123)
.+.+..+++.....+...++++|++||++||++|+.+.|.+.+++.+|+++.|+.+|+|+..++++.++|..+||+++++
T Consensus 3 ~v~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k 82 (106)
T KOG0907|consen 3 EVETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYK 82 (106)
T ss_pred eEEehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEE
Confidence 34555666666665556779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCHHHHHHHHHHH
Q 033251 89 EGKVLERIVGAKKDELQLAVEKH 111 (123)
Q Consensus 89 ~g~~~~~~~g~~~~~l~~~l~~~ 111 (123)
+|+.+.++.|.+.+++++.++.+
T Consensus 83 ~g~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 83 GGEEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred CCEEEEEEecCCHHHHHHHHHhc
Confidence 99999999999988888877653
No 4
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.3e-26 Score=150.58 Aligned_cols=109 Identities=25% Similarity=0.485 Sum_probs=99.7
Q ss_pred CcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcccccE
Q 033251 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 5 ~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
.++++|+ ..+|...+.+. +..+||||+||++||++|+++.|.++++...|.+ +.+.+||+|.++.++.+|||+++|+
T Consensus 23 ~~I~dvT-~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 23 PGIKDVT-EANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccceech-HhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCe
Confidence 3467774 68999887764 5677999999999999999999999999999986 9999999999999999999999999
Q ss_pred EEEecCCeEEEEEccC-CHHHHHHHHHHHhccc
Q 033251 84 FVLTKEGKVLERIVGA-KKDELQLAVEKHATTV 115 (123)
Q Consensus 84 ~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~~ 115 (123)
++.|.+|+++..+.|. +.+.+++||+++++..
T Consensus 101 V~af~dGqpVdgF~G~qPesqlr~~ld~~~~~~ 133 (304)
T COG3118 101 VYAFKDGQPVDGFQGAQPESQLRQFLDKVLPAE 133 (304)
T ss_pred EEEeeCCcCccccCCCCcHHHHHHHHHHhcChH
Confidence 9999999999999999 6789999999999873
No 5
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.93 E-value=2.1e-25 Score=130.69 Aligned_cols=85 Identities=20% Similarity=0.413 Sum_probs=78.4
Q ss_pred hhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcccccEEEEecCCe
Q 033251 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGK 91 (123)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 91 (123)
.++|++.+.. .+++++||.||++||++|+.+.|.++++++++++ +.|++||++++++++.+|+|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 4677777753 3788999999999999999999999999999997 799999999999999999999999999999999
Q ss_pred EEEEEccC
Q 033251 92 VLERIVGA 99 (123)
Q Consensus 92 ~~~~~~g~ 99 (123)
.+.+..|.
T Consensus 80 ~v~~~~G~ 87 (114)
T cd02954 80 HMKIDLGT 87 (114)
T ss_pred EEEEEcCC
Confidence 99999885
No 6
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.93 E-value=8.2e-25 Score=127.22 Aligned_cols=97 Identities=27% Similarity=0.538 Sum_probs=88.9
Q ss_pred EEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccchhHHHhcCcccccEEEE
Q 033251 9 SCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDELKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 9 ~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~ 86 (123)
.+.+.++|+..+ .++++++|+||++||++|+.+.|.++++.+.++ .+.+..+|++ .++++++|+|+++||+++
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~ 77 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLF 77 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEE
Confidence 467888888877 578999999999999999999999999999986 3889999999 778899999999999999
Q ss_pred ecCCeEEEEEccCCHHHHHHHHHH
Q 033251 87 TKEGKVLERIVGAKKDELQLAVEK 110 (123)
Q Consensus 87 ~~~g~~~~~~~g~~~~~l~~~l~~ 110 (123)
+++|+.+.+..|.+.+.++++|++
T Consensus 78 ~~~g~~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 78 YKNGELVAVIRGANAPLLNKTITE 101 (102)
T ss_pred EECCEEEEEEecCChHHHHHHHhh
Confidence 999999999999999999999875
No 7
>PHA02278 thioredoxin-like protein
Probab=99.93 E-value=4.9e-25 Score=127.93 Aligned_cols=93 Identities=15% Similarity=0.312 Sum_probs=82.4
Q ss_pred eehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEecccc----hhHHHhcCcccccEEE
Q 033251 11 HTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDEL----KSVAEEWAVEAMPTFV 85 (123)
Q Consensus 11 ~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~----~~~~~~~~i~~~Pt~~ 85 (123)
++.++|.+.+ .+++++||+||++||++|+.+.|.++++++.+. ++.++.+|++.+ ++++++|+|.++||++
T Consensus 2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 4677888888 579999999999999999999999999998754 478999999976 6899999999999999
Q ss_pred EecCCeEEEEEccC-CHHHHHHH
Q 033251 86 LTKEGKVLERIVGA-KKDELQLA 107 (123)
Q Consensus 86 ~~~~g~~~~~~~g~-~~~~l~~~ 107 (123)
+|++|+.+.+..|. +.+.+.++
T Consensus 78 ~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEEEEEEeCCCCHHHHHhh
Confidence 99999999999997 77777664
No 8
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.93 E-value=1.5e-24 Score=125.86 Aligned_cols=98 Identities=40% Similarity=0.704 Sum_probs=91.9
Q ss_pred eehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEecccchhHHHhcCcccccEEEEecC
Q 033251 11 HTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89 (123)
Q Consensus 11 ~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~ 89 (123)
.+.++|++.+. .+++++||+||++||++|+.+.|.++++++.++ ++.++.+|+++++.++++|+|.++|+++++++
T Consensus 4 lt~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 4 LTDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp ESTTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CCHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 36789999984 258999999999999999999999999999999 79999999999999999999999999999999
Q ss_pred CeEEEEEccC-CHHHHHHHHHHH
Q 033251 90 GKVLERIVGA-KKDELQLAVEKH 111 (123)
Q Consensus 90 g~~~~~~~g~-~~~~l~~~l~~~ 111 (123)
|+...++.|. +.+.|.++|+++
T Consensus 81 g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcC
Confidence 9999999999 899999999875
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.92 E-value=3.6e-24 Score=126.14 Aligned_cols=104 Identities=12% Similarity=0.132 Sum_probs=90.4
Q ss_pred CCCCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHH-HhcCcc
Q 033251 2 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVA-EEWAVE 79 (123)
Q Consensus 2 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~-~~~~i~ 79 (123)
+..+.+++++ ..+|++...- ..++++++|.||++||++|+.+.|.++++++.+++ +.++.||++.+..++ ++|+|.
T Consensus 6 ~~~~~v~~l~-~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~ 83 (113)
T cd03006 6 SQRSPVLDFY-KGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFF 83 (113)
T ss_pred CCCCCeEEec-hhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCc
Confidence 4567788885 5788886321 26899999999999999999999999999999986 899999999999998 589999
Q ss_pred cccEEEEecCCeEEEEEccC-CHHHHHHH
Q 033251 80 AMPTFVLTKEGKVLERIVGA-KKDELQLA 107 (123)
Q Consensus 80 ~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~ 107 (123)
++||+++|++|+...++.|. +.+.|..+
T Consensus 84 ~~PTl~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 84 YFPVIHLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred ccCEEEEEECCccceEEeCCCCHHHHHhh
Confidence 99999999999988888888 78888765
No 10
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.92 E-value=3.2e-24 Score=126.76 Aligned_cols=93 Identities=28% Similarity=0.423 Sum_probs=86.8
Q ss_pred CCCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCccccc
Q 033251 3 EEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMP 82 (123)
Q Consensus 3 ~~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~P 82 (123)
.-|.+..|++.++|.+.+ .++++++++||++||++|+.+.|.++++++.++++.|+.||+++.+.++++|+|.++|
T Consensus 2 ~~g~v~~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vP 77 (113)
T cd02989 2 GHGKYREVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLP 77 (113)
T ss_pred CCCCeEEeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCC
Confidence 357889999889999988 5678999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCeEEEEEccC
Q 033251 83 TFVLTKEGKVLERIVGA 99 (123)
Q Consensus 83 t~~~~~~g~~~~~~~g~ 99 (123)
|+++|++|+.+.++.|.
T Consensus 78 t~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 78 TVILFKNGKTVDRIVGF 94 (113)
T ss_pred EEEEEECCEEEEEEECc
Confidence 99999999999988766
No 11
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.92 E-value=4.4e-24 Score=122.77 Aligned_cols=93 Identities=29% Similarity=0.548 Sum_probs=84.2
Q ss_pred hHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcccccEEEEecCCeEE
Q 033251 15 SWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVL 93 (123)
Q Consensus 15 ~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 93 (123)
+|++.+.. .++++++|+||++||++|+.+.|.++++.+.+++ +.++.+|++.++.++++|+|.++|+++++++|+.+
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 56777754 4588999999999999999999999999999975 88999999999999999999999999999999999
Q ss_pred EEEccC-CHHHHHHHHH
Q 033251 94 ERIVGA-KKDELQLAVE 109 (123)
Q Consensus 94 ~~~~g~-~~~~l~~~l~ 109 (123)
.++.|. +.++|..+|+
T Consensus 80 ~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeecCCCCHHHHHHHhC
Confidence 999998 7889988874
No 12
>PTZ00051 thioredoxin; Provisional
Probab=99.92 E-value=7.7e-24 Score=122.13 Aligned_cols=96 Identities=38% Similarity=0.733 Sum_probs=89.0
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEE
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~ 86 (123)
+.++.+.+++.+.+ ..+++++++||++||++|+.+.+.++++++.++++.++.+|+++...++++|++.++|++++
T Consensus 2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 56788888888877 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEEccCCHHHHHH
Q 033251 87 TKEGKVLERIVGAKKDELQL 106 (123)
Q Consensus 87 ~~~g~~~~~~~g~~~~~l~~ 106 (123)
+++|+.+.++.|...++|++
T Consensus 78 ~~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 78 FKNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred EeCCeEEEEEeCCCHHHhhc
Confidence 99999999999998887764
No 13
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=4.7e-24 Score=123.78 Aligned_cols=97 Identities=16% Similarity=0.355 Sum_probs=86.4
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcccccEE
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTF 84 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~Pt~ 84 (123)
+++++ +.++|++.+ .++++++|.||++||++|+.+.|.++++++.+++ +.++.+|+++++.++++++|.++||+
T Consensus 2 ~~~~l-~~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 76 (101)
T cd03003 2 EIVTL-DRGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSL 76 (101)
T ss_pred CeEEc-CHhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEE
Confidence 45666 467898877 4569999999999999999999999999999975 89999999999999999999999999
Q ss_pred EEecCCeEEEEEccC-CHHHHHHH
Q 033251 85 VLTKEGKVLERIVGA-KKDELQLA 107 (123)
Q Consensus 85 ~~~~~g~~~~~~~g~-~~~~l~~~ 107 (123)
++|++|+...++.|. +.+.|.++
T Consensus 77 ~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEcCCCCcccCCCCCCHHHHHhh
Confidence 999999988899898 77777665
No 14
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.92 E-value=8.5e-24 Score=128.19 Aligned_cols=108 Identities=17% Similarity=0.294 Sum_probs=95.4
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcccccEEE
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFV 85 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~Pt~~ 85 (123)
+.++.+.+++++.+.. .+++++||.||++||++|+.+.|.++++++.+++ +.++.||+|++++++..|+|.+.|+++
T Consensus 5 l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~ 82 (142)
T PLN00410 5 LPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVM 82 (142)
T ss_pred HhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEE
Confidence 4567889999999975 4799999999999999999999999999999998 888999999999999999999877655
Q ss_pred -EecCCe-EEEEEcc--------C-CHHHHHHHHHHHhcccc
Q 033251 86 -LTKEGK-VLERIVG--------A-KKDELQLAVEKHATTVE 116 (123)
Q Consensus 86 -~~~~g~-~~~~~~g--------~-~~~~l~~~l~~~~~~~~ 116 (123)
+|++|+ .+++..| . +.++|.+.++..+..+.
T Consensus 83 ~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 83 FFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred EEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 889998 8899989 4 67899999988876543
No 15
>PRK09381 trxA thioredoxin; Provisional
Probab=99.92 E-value=3.1e-23 Score=121.84 Aligned_cols=105 Identities=30% Similarity=0.613 Sum_probs=94.2
Q ss_pred CCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCccccc
Q 033251 4 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMP 82 (123)
Q Consensus 4 ~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~P 82 (123)
+..++++. .++|++.+. ..+++++++||++||++|+.+.|.++++++.+++ +.+..+|++..+.++++|++.++|
T Consensus 2 ~~~v~~~~-~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 77 (109)
T PRK09381 2 SDKIIHLT-DDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 77 (109)
T ss_pred CCcceeeC-hhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCC
Confidence 45677774 578888763 4688999999999999999999999999999964 899999999999999999999999
Q ss_pred EEEEecCCeEEEEEccC-CHHHHHHHHHHHh
Q 033251 83 TFVLTKEGKVLERIVGA-KKDELQLAVEKHA 112 (123)
Q Consensus 83 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 112 (123)
+++++++|+.+.++.|. +.+.+..+|++.+
T Consensus 78 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 78 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999999999998 7899999998875
No 16
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.91 E-value=1e-23 Score=124.36 Aligned_cols=98 Identities=20% Similarity=0.349 Sum_probs=86.7
Q ss_pred ehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccchhHHHhcCcccccEEEEecC
Q 033251 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89 (123)
Q Consensus 12 ~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~ 89 (123)
+..+|++.+.. ...+++++|.||++||++|+.+.|.++++.+.++ ++.++.+|++..+.++.+++|.++||++++++
T Consensus 10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~ 88 (111)
T cd02963 10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIIN 88 (111)
T ss_pred eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEEC
Confidence 45677665432 1478999999999999999999999999999986 58999999999999999999999999999999
Q ss_pred CeEEEEEccC-CHHHHHHHHHH
Q 033251 90 GKVLERIVGA-KKDELQLAVEK 110 (123)
Q Consensus 90 g~~~~~~~g~-~~~~l~~~l~~ 110 (123)
|+.+.+..|. +.+.|.++|++
T Consensus 89 g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 89 GQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CEEEEEecCCCCHHHHHHHHhc
Confidence 9999999998 78899999875
No 17
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.91 E-value=1.2e-23 Score=122.62 Aligned_cols=99 Identities=28% Similarity=0.437 Sum_probs=87.1
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcccccEE
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTF 84 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~Pt~ 84 (123)
.++++ +.++|++.+. .++++++|.||++||++|+.+.|.++++++.+.+ +.++.+|++++++++++|+|.++||+
T Consensus 2 ~v~~l-~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~ 77 (104)
T cd03004 2 SVITL-TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTI 77 (104)
T ss_pred cceEc-CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEE
Confidence 35566 4678988874 4677999999999999999999999999999864 99999999999999999999999999
Q ss_pred EEecCC-eEEEEEccC-C-HHHHHHHH
Q 033251 85 VLTKEG-KVLERIVGA-K-KDELQLAV 108 (123)
Q Consensus 85 ~~~~~g-~~~~~~~g~-~-~~~l~~~l 108 (123)
++|++| +...++.|. + .++|.+||
T Consensus 78 ~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 78 RLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 999877 899999998 6 88887764
No 18
>PRK10996 thioredoxin 2; Provisional
Probab=99.91 E-value=4.3e-23 Score=126.04 Aligned_cols=103 Identities=28% Similarity=0.598 Sum_probs=91.9
Q ss_pred CcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEecccchhHHHhcCcccccE
Q 033251 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 5 ~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
+.++.+ +.++|++.+ .++++++|+||++||++|+.+.|.++++++.+. ++.++.+|+++++.++++|+|.++|+
T Consensus 35 ~~~i~~-~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Pt 109 (139)
T PRK10996 35 GEVINA-TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPT 109 (139)
T ss_pred CCCEEc-CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCE
Confidence 445555 567888776 568999999999999999999999999998876 59999999999999999999999999
Q ss_pred EEEecCCeEEEEEccC-CHHHHHHHHHHHh
Q 033251 84 FVLTKEGKVLERIVGA-KKDELQLAVEKHA 112 (123)
Q Consensus 84 ~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 112 (123)
+++|++|+.+.++.|. +.+.++++|++++
T Consensus 110 lii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 110 IMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999999999998 7899999998763
No 19
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.91 E-value=1.3e-23 Score=121.62 Aligned_cols=83 Identities=24% Similarity=0.379 Sum_probs=77.2
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc-cchhHHHhcCcccccEEEEecCCeEEEEEccC-CHH
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKD 102 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~-~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~ 102 (123)
.+|++++|.||++||++|+.+.|.++++++.++++.++.+|.+ +++.++++|+|.++||+++|++| ...++.|. +.+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~ 94 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLD 94 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHH
Confidence 5899999999999999999999999999999999999999998 78999999999999999999999 77889998 788
Q ss_pred HHHHHH
Q 033251 103 ELQLAV 108 (123)
Q Consensus 103 ~l~~~l 108 (123)
.|.+|+
T Consensus 95 ~l~~f~ 100 (100)
T cd02999 95 SLAAFY 100 (100)
T ss_pred HHHhhC
Confidence 888764
No 20
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.91 E-value=4.3e-23 Score=118.75 Aligned_cols=95 Identities=39% Similarity=0.792 Sum_probs=86.0
Q ss_pred ehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhh-CCCeEEEEEecccchhHHHhcCcccccEEEEecCC
Q 033251 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEG 90 (123)
Q Consensus 12 ~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~-~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g 90 (123)
|.++|++.+... .++++++.||++||+.|+.+.+.++++.+. .+++.++.+|.++.++++++|++.++||+++|++|
T Consensus 1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 78 (97)
T cd02984 1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG 78 (97)
T ss_pred CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence 357888888652 379999999999999999999999999999 55799999999999999999999999999999999
Q ss_pred eEEEEEccCCHHHHHHHH
Q 033251 91 KVLERIVGAKKDELQLAV 108 (123)
Q Consensus 91 ~~~~~~~g~~~~~l~~~l 108 (123)
+.+.+..|.+.+.|.+.|
T Consensus 79 ~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 79 TIVDRVSGADPKELAKKV 96 (97)
T ss_pred EEEEEEeCCCHHHHHHhh
Confidence 999999999888888765
No 21
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.91 E-value=2.7e-23 Score=122.91 Aligned_cols=93 Identities=27% Similarity=0.517 Sum_probs=84.4
Q ss_pred CCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccE
Q 033251 4 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 4 ~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
-|.+.++++ ++|.+.+... ..+++++|+||++||++|+.+.|.++++++.++++.|+.+|++++ .++++|+|.++||
T Consensus 3 ~g~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 3 FGEVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred CceEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 477888976 8999888542 235899999999999999999999999999999999999999998 9999999999999
Q ss_pred EEEecCCeEEEEEccC
Q 033251 84 FVLTKEGKVLERIVGA 99 (123)
Q Consensus 84 ~~~~~~g~~~~~~~g~ 99 (123)
+++|++|+.+.+..|.
T Consensus 80 ~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 80 LLVYKNGELIDNIVGF 95 (113)
T ss_pred EEEEECCEEEEEEecH
Confidence 9999999999999885
No 22
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.90 E-value=5.2e-23 Score=120.71 Aligned_cols=98 Identities=29% Similarity=0.556 Sum_probs=83.9
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhC----C---CeEEEEEecccchhHHHhcCc
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL----P---AVIFLKVDVDELKSVAEEWAV 78 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~----~---~v~~~~i~~~~~~~~~~~~~i 78 (123)
.++++ +.++|++.+ ..+++++|.||++||++|+++.|.++++++.+ + .+.++.+|++.+++++++|+|
T Consensus 2 ~v~~l-~~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v 76 (108)
T cd02996 2 EIVSL-TSGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI 76 (108)
T ss_pred ceEEc-CHhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC
Confidence 45667 467898877 56789999999999999999999999988764 2 389999999999999999999
Q ss_pred ccccEEEEecCCe-EEEEEccC-CHHHHHHHH
Q 033251 79 EAMPTFVLTKEGK-VLERIVGA-KKDELQLAV 108 (123)
Q Consensus 79 ~~~Pt~~~~~~g~-~~~~~~g~-~~~~l~~~l 108 (123)
+++||+++|++|+ ....+.|. +.+.|.+||
T Consensus 77 ~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 77 NKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999999998 44777788 688887764
No 23
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.90 E-value=1.3e-22 Score=120.43 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=90.3
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChh--hh--hhhHHHHHHHhhC--C-CeEEEEEecccchhHHHhcCc
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPP--CK--LMSPILSELAKKL--P-AVIFLKVDVDELKSVAEEWAV 78 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~--C~--~~~~~~~~~~~~~--~-~v~~~~i~~~~~~~~~~~~~i 78 (123)
.+..+ +.++|++.+. .++.++|++||+.||++ |+ .+.|.+.+++..+ + ++.++.||++++++++++|+|
T Consensus 10 ~v~~l-t~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 10 RVIDL-NEKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred ceeeC-ChhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence 34455 4689999885 47789999999999977 99 8899999999998 5 599999999999999999999
Q ss_pred ccccEEEEecCCeEEEEEccC-CHHHHHHHHHHHh
Q 033251 79 EAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKHA 112 (123)
Q Consensus 79 ~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 112 (123)
.++||+++|++|+.+. +.|. +.+.|.++|++++
T Consensus 86 ~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999999887 8888 8999999999875
No 24
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-22 Score=130.90 Aligned_cols=111 Identities=44% Similarity=0.741 Sum_probs=103.6
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEE
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFV 85 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~ 85 (123)
.++.|++..+|+..+.. ..+|.++|.|+++||++|+...|.+..++.+|++..|..+|+++.+..+..+||...||++
T Consensus 2 ~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred CeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEE
Confidence 36789999999999965 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeEEEEEccCCHHHHHHHHHHHhcccccc
Q 033251 86 LTKEGKVLERIVGAKKDELQLAVEKHATTVENA 118 (123)
Q Consensus 86 ~~~~g~~~~~~~g~~~~~l~~~l~~~~~~~~~~ 118 (123)
+|++|..+.++.|.+...|+..+.++...++..
T Consensus 80 ff~ng~kid~~qGAd~~gLe~kv~~~~stsaa~ 112 (288)
T KOG0908|consen 80 FFRNGVKIDQIQGADASGLEEKVAKYASTSAAS 112 (288)
T ss_pred EEecCeEeeeecCCCHHHHHHHHHHHhccCccc
Confidence 999999999999999999999999998765443
No 25
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.89 E-value=3.6e-22 Score=115.78 Aligned_cols=97 Identities=28% Similarity=0.537 Sum_probs=83.9
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccchhHHHhcCcccccE
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
++++++ .++|++.+ +++ ++|.||++||++|+.+.|.++++++.+. ++.+..+|+++++.++++|+|.++||
T Consensus 2 ~v~~l~-~~~f~~~~-----~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt 74 (101)
T cd02994 2 NVVELT-DSNWTLVL-----EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPT 74 (101)
T ss_pred ceEEcC-hhhHHHHh-----CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCE
Confidence 467774 67898766 243 6899999999999999999999998875 59999999999999999999999999
Q ss_pred EEEecCCeEEEEEccC-CHHHHHHHHHH
Q 033251 84 FVLTKEGKVLERIVGA-KKDELQLAVEK 110 (123)
Q Consensus 84 ~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 110 (123)
++++++|+. .++.|. +.+.|..+|++
T Consensus 75 ~~~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 999999985 778888 78899888763
No 26
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.89 E-value=3.7e-22 Score=125.91 Aligned_cols=105 Identities=22% Similarity=0.395 Sum_probs=89.9
Q ss_pred CCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccE
Q 033251 4 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 4 ~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
-|.+.+|++.++|.+.+... .++.++||+||++||++|+.+.|.+.+++..|+.+.|+.||++.. .++.+|+|..+||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCE
Confidence 47788998778999888542 345699999999999999999999999999999999999999987 8899999999999
Q ss_pred EEEecCCeEEEEEccCC--------HHHHHHHHHH
Q 033251 84 FVLTKEGKVLERIVGAK--------KDELQLAVEK 110 (123)
Q Consensus 84 ~~~~~~g~~~~~~~g~~--------~~~l~~~l~~ 110 (123)
+++|++|+.+.++.|.+ .+.|+.+|.+
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99999999999887663 3555555543
No 27
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.89 E-value=2.3e-22 Score=117.13 Aligned_cols=90 Identities=20% Similarity=0.288 Sum_probs=82.2
Q ss_pred ehhhHHHHHHhhhhcCCEEEEEEEcCC--ChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcccccEEEEec
Q 033251 12 TVESWNEQLQKGIAAKKLIVVDFTASW--CPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTK 88 (123)
Q Consensus 12 ~~~~~~~~~~~~~~~~k~~vv~f~~~~--C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~ 88 (123)
+.++|++.+ +.+.++|+.||++| ||.|+.+.|.++++++.|++ +.++.+|+++++.++.+|+|.++||+++|+
T Consensus 16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fk 91 (111)
T cd02965 16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFR 91 (111)
T ss_pred ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEE
Confidence 467888766 67899999999997 99999999999999999987 889999999999999999999999999999
Q ss_pred CCeEEEEEccC-CHHHHH
Q 033251 89 EGKVLERIVGA-KKDELQ 105 (123)
Q Consensus 89 ~g~~~~~~~g~-~~~~l~ 105 (123)
+|+.+.+..|. +.+++.
T Consensus 92 dGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 92 DGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CCEEEEEEeCccCHHHHh
Confidence 99999999998 666654
No 28
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.89 E-value=6.9e-22 Score=128.56 Aligned_cols=111 Identities=23% Similarity=0.375 Sum_probs=96.3
Q ss_pred CcEEEEeehhhHHHHHHhhh-hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCccccc
Q 033251 5 GQVISCHTVESWNEQLQKGI-AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMP 82 (123)
Q Consensus 5 ~~~~~i~~~~~~~~~~~~~~-~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~P 82 (123)
..++++ +.++|++.+.... ..+++++|+||++||++|+.+.|.++++++.+++ +.+..+|++++++++++|+|.++|
T Consensus 30 ~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 30 NALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 456667 4789998775421 1368999999999999999999999999999985 899999999999999999999999
Q ss_pred EEEEecCCeEEEEEccC-CHHHHHHHHHHHhcccc
Q 033251 83 TFVLTKEGKVLERIVGA-KKDELQLAVEKHATTVE 116 (123)
Q Consensus 83 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~~~ 116 (123)
|+++|++|+.+....|. +.+.|.+++.+......
T Consensus 109 Tl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred EEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999888887 89999999998876543
No 29
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.89 E-value=4.4e-22 Score=115.98 Aligned_cols=97 Identities=19% Similarity=0.306 Sum_probs=83.7
Q ss_pred hhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcccccEEEEecCCe
Q 033251 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGK 91 (123)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 91 (123)
.+++++.+.+ .+++++||.|+++||++|+.+.|.++++++++++ +.|+.+|+++.++++++|+|...||+++|++|+
T Consensus 2 ~~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 2 KKEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 4678888876 3799999999999999999999999999999998 999999999999999999999999999999998
Q ss_pred EEEEEccC-----------CHHHHHHHHHHH
Q 033251 92 VLERIVGA-----------KKDELQLAVEKH 111 (123)
Q Consensus 92 ~~~~~~g~-----------~~~~l~~~l~~~ 111 (123)
.+..-.|. +.+++...++..
T Consensus 80 h~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 80 HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 88755544 235666666544
No 30
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.89 E-value=1.1e-21 Score=120.18 Aligned_cols=93 Identities=26% Similarity=0.508 Sum_probs=82.4
Q ss_pred hhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEecccc--hhHHHhcCcccccEEEEe-cCCeEEEEEcc
Q 033251 23 GIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDEL--KSVAEEWAVEAMPTFVLT-KEGKVLERIVG 98 (123)
Q Consensus 23 ~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~--~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g 98 (123)
+..+++++||+||++||++|+.+.|.++++.+.+. .+.|+.|+++.. ..++++|+|.++|+++++ ++|+++.++.|
T Consensus 16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G 95 (142)
T cd02950 16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIG 95 (142)
T ss_pred HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeC
Confidence 33789999999999999999999999999999986 478888888754 578999999999999999 58999999999
Q ss_pred C-CHHHHHHHHHHHhccc
Q 033251 99 A-KKDELQLAVEKHATTV 115 (123)
Q Consensus 99 ~-~~~~l~~~l~~~~~~~ 115 (123)
. +.+.|.++|++++...
T Consensus 96 ~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 96 LQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CCCHHHHHHHHHHHHcCC
Confidence 9 6889999999998643
No 31
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.89 E-value=6.2e-22 Score=114.80 Aligned_cols=96 Identities=30% Similarity=0.565 Sum_probs=83.4
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC----CeEEEEEecccchhHHHhcCccccc
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP----AVIFLKVDVDELKSVAEEWAVEAMP 82 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~----~v~~~~i~~~~~~~~~~~~~i~~~P 82 (123)
++++ +.++|++.+. ++ ++++.||++||++|+.+.|.++++++.+. ++.++.+|++.+..++++|+|.++|
T Consensus 2 ~~~l-~~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 75 (102)
T cd03005 2 VLEL-TEDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYP 75 (102)
T ss_pred eeEC-CHHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCC
Confidence 4556 4678888883 33 59999999999999999999999998885 4999999999999999999999999
Q ss_pred EEEEecCCeEEEEEccC-CHHHHHHHH
Q 033251 83 TFVLTKEGKVLERIVGA-KKDELQLAV 108 (123)
Q Consensus 83 t~~~~~~g~~~~~~~g~-~~~~l~~~l 108 (123)
|++++++|+...++.|. +.+.|.++|
T Consensus 76 t~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 99999999988899999 777777664
No 32
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.88 E-value=1.5e-21 Score=112.65 Aligned_cols=97 Identities=39% Similarity=0.753 Sum_probs=87.0
Q ss_pred hhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEecccchhHHHhcCcccccEEEEecCCe
Q 033251 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGK 91 (123)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 91 (123)
.++|.+.+. .++++++++||++||+.|+.+.+.++++.+.++ ++.++.+|++.++.++++|++.++|+++++++|+
T Consensus 3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 467777764 357799999999999999999999999998887 5999999999999999999999999999999999
Q ss_pred EEEEEccC-CHHHHHHHHHHHh
Q 033251 92 VLERIVGA-KKDELQLAVEKHA 112 (123)
Q Consensus 92 ~~~~~~g~-~~~~l~~~l~~~~ 112 (123)
......|. +.+.+..+|++.+
T Consensus 80 ~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred EeeeecCCCCHHHHHHHHHhhC
Confidence 99999898 7799999998753
No 33
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.88 E-value=1.7e-21 Score=120.04 Aligned_cols=92 Identities=26% Similarity=0.504 Sum_probs=81.8
Q ss_pred CcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccchhHHHhcCccc--
Q 033251 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDELKSVAEEWAVEA-- 80 (123)
Q Consensus 5 ~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~~~~~~~~~i~~-- 80 (123)
+.+.+++ .++|++.+.. ..+++++|.||++||++|+.+.|.++++++.++ ++.++.||++++++++++|+|.+
T Consensus 28 ~~v~~l~-~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYFT-PKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSP 104 (152)
T ss_pred CccEEcC-HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecC
Confidence 4556664 6788887754 457899999999999999999999999999986 49999999999999999999988
Q ss_pred ----ccEEEEecCCeEEEEEccC
Q 033251 81 ----MPTFVLTKEGKVLERIVGA 99 (123)
Q Consensus 81 ----~Pt~~~~~~g~~~~~~~g~ 99 (123)
+||+++|++|+.+.+..|+
T Consensus 105 ~v~~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 105 LSKQLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred CcCCCCEEEEEECCEEEEEEecc
Confidence 9999999999999999984
No 34
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.88 E-value=7.1e-22 Score=115.89 Aligned_cols=98 Identities=27% Similarity=0.452 Sum_probs=84.7
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEeccc--chhHHHhcCcccccE
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDE--LKSVAEEWAVEAMPT 83 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~--~~~~~~~~~i~~~Pt 83 (123)
++++ +.++|++.+. .++++++|.||++||++|+.+.|.++++++.+.+ +.++.+|++. +++++++|+|.++|+
T Consensus 2 v~~l-~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt 77 (109)
T cd03002 2 VYEL-TPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPT 77 (109)
T ss_pred eEEc-chhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCE
Confidence 4556 4678988885 4688999999999999999999999999999875 8999999998 889999999999999
Q ss_pred EEEecCCe-----EEEEEccC-CHHHHHHHH
Q 033251 84 FVLTKEGK-----VLERIVGA-KKDELQLAV 108 (123)
Q Consensus 84 ~~~~~~g~-----~~~~~~g~-~~~~l~~~l 108 (123)
++++++|+ ....+.|. +.+.|.+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 99998775 45677788 788888886
No 35
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.88 E-value=1.9e-21 Score=114.90 Aligned_cols=99 Identities=24% Similarity=0.302 Sum_probs=84.1
Q ss_pred hHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeEEE
Q 033251 15 SWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLE 94 (123)
Q Consensus 15 ~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 94 (123)
++...+...+.++..++++||++||++|+.+.|.++++++.++.+.+..+|++++++++.+|+|.++||++++++|....
T Consensus 10 ~~~~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~ 89 (113)
T cd02975 10 ALKEEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDG 89 (113)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecc
Confidence 44443333346788899999999999999999999999998878999999999999999999999999999998765444
Q ss_pred --EEccC-CHHHHHHHHHHHhc
Q 033251 95 --RIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 95 --~~~g~-~~~~l~~~l~~~~~ 113 (123)
++.|. +.+++.++|+.++.
T Consensus 90 ~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 90 GIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred eEEEEecCchHHHHHHHHHHHh
Confidence 67788 67899999988765
No 36
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.88 E-value=2.4e-21 Score=112.60 Aligned_cols=97 Identities=28% Similarity=0.517 Sum_probs=84.2
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC---CeEEEEEeccc--chhHHHhcCcccc
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDE--LKSVAEEWAVEAM 81 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~---~v~~~~i~~~~--~~~~~~~~~i~~~ 81 (123)
+++++ ..+|++.+ .++++++|.||++||++|+++.|.++++.+.+. .+.++.+|++. ++.++++++|.++
T Consensus 2 ~~~l~-~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~ 76 (104)
T cd02997 2 VVHLT-DEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGF 76 (104)
T ss_pred eEEec-hHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccc
Confidence 45664 56888777 457799999999999999999999999998875 38899999998 8999999999999
Q ss_pred cEEEEecCCeEEEEEccC-CHHHHHHHH
Q 033251 82 PTFVLTKEGKVLERIVGA-KKDELQLAV 108 (123)
Q Consensus 82 Pt~~~~~~g~~~~~~~g~-~~~~l~~~l 108 (123)
|+++++++|+.+.++.|. +.+.+.+||
T Consensus 77 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 77 PTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred cEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999999999999998 788877664
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.88 E-value=1.6e-21 Score=112.88 Aligned_cols=95 Identities=26% Similarity=0.500 Sum_probs=85.0
Q ss_pred hhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC---CeEEEEEecccchhHHHhcCcccccEEEEecC
Q 033251 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89 (123)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~---~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~ 89 (123)
.++|++.+ .++++++|+||++||+.|+.+.+.++++++.+. ++.++.+|++.++.++++|++.++|+++++.+
T Consensus 3 ~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~ 78 (102)
T TIGR01126 3 ASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPK 78 (102)
T ss_pred hhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecC
Confidence 46777776 479999999999999999999999999999987 39999999999999999999999999999987
Q ss_pred CeEEEEEccC-CHHHHHHHHHHH
Q 033251 90 GKVLERIVGA-KKDELQLAVEKH 111 (123)
Q Consensus 90 g~~~~~~~g~-~~~~l~~~l~~~ 111 (123)
|+....+.|. +.++|..+|++.
T Consensus 79 ~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 79 GKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CCcceeecCCCCHHHHHHHHHhc
Confidence 7767788888 788999999875
No 38
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.87 E-value=7.1e-21 Score=109.67 Aligned_cols=91 Identities=29% Similarity=0.552 Sum_probs=81.8
Q ss_pred HHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEecccchhHHHhcCcccccEEEEecCCeEEE
Q 033251 16 WNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLE 94 (123)
Q Consensus 16 ~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 94 (123)
++..+. ..+++++++||++||+.|+.+.|.++++.+.++ ++.+..+|+++.+++..++++.++|+++++++|+.+.
T Consensus 5 ~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 5 LRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred HHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE
Confidence 444453 589999999999999999999999999999987 5999999999999999999999999999999999999
Q ss_pred EEccC-CHHHHHHHHH
Q 033251 95 RIVGA-KKDELQLAVE 109 (123)
Q Consensus 95 ~~~g~-~~~~l~~~l~ 109 (123)
++.|. +.+.+.++|+
T Consensus 82 ~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 EISGVKMKSEYREFIE 97 (97)
T ss_pred EEeCCccHHHHHHhhC
Confidence 99998 6888887763
No 39
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.87 E-value=1.4e-21 Score=113.88 Aligned_cols=91 Identities=29% Similarity=0.509 Sum_probs=78.6
Q ss_pred hHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHH---HHHHhhCC-CeEEEEEeccc----chhHHHhcCcccccEEEE
Q 033251 15 SWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPIL---SELAKKLP-AVIFLKVDVDE----LKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 15 ~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~---~~~~~~~~-~v~~~~i~~~~----~~~~~~~~~i~~~Pt~~~ 86 (123)
+|.+.+ .++++++|+||++||++|+.+.+.+ .++.+.+. ++.++.+|++. ...++++|++.++||+++
T Consensus 3 ~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 3 ALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 444444 7899999999999999999999888 57777777 69999999987 578899999999999999
Q ss_pred ec--CCeEEEEEccC-CHHHHHHHHH
Q 033251 87 TK--EGKVLERIVGA-KKDELQLAVE 109 (123)
Q Consensus 87 ~~--~g~~~~~~~g~-~~~~l~~~l~ 109 (123)
|+ +|+...++.|. +.++|.++|+
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 97 79999999998 8888888763
No 40
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.87 E-value=7.6e-21 Score=110.36 Aligned_cols=98 Identities=26% Similarity=0.445 Sum_probs=84.1
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEecccchhHHHhcCcccccEEE
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFV 85 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~~~~~~~~~i~~~Pt~~ 85 (123)
++++ +..+|++.+. ..+++++++||++||++|+.+.|.+.++++.++ .+.+..+|+++++.++++|+|.++|+++
T Consensus 2 v~~l-~~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 2 VVEL-TDSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIK 77 (103)
T ss_pred eEEc-CHHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEE
Confidence 3455 4678888774 356789999999999999999999999999986 5999999999999999999999999999
Q ss_pred EecCC-eEEEEEccC-CHHHHHHHH
Q 033251 86 LTKEG-KVLERIVGA-KKDELQLAV 108 (123)
Q Consensus 86 ~~~~g-~~~~~~~g~-~~~~l~~~l 108 (123)
++++| +....+.|. +.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecCCCCCHHHHHHHh
Confidence 99877 556677777 788888875
No 41
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.86 E-value=1.1e-20 Score=112.99 Aligned_cols=93 Identities=24% Similarity=0.296 Sum_probs=77.6
Q ss_pred ehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccch-----------hHHHhcC---
Q 033251 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELK-----------SVAEEWA--- 77 (123)
Q Consensus 12 ~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~-----------~~~~~~~--- 77 (123)
+.++|.+.+ .+++.++++|+++|||+|+.+.|.++++.+. .++.++++|++.+. ++.+.|+
T Consensus 12 t~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~ 86 (122)
T TIGR01295 12 TVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT 86 (122)
T ss_pred CHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcc
Confidence 567777777 6788999999999999999999999999998 56788888888542 4556665
Q ss_pred -cccccEEEEecCCeEEEEEccC--CHHHHHHHHH
Q 033251 78 -VEAMPTFVLTKEGKVLERIVGA--KKDELQLAVE 109 (123)
Q Consensus 78 -i~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~l~ 109 (123)
+.++||++++++|+.+.+..|. +.++|++++.
T Consensus 87 ~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 87 SFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 4559999999999999999995 5888888763
No 42
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.86 E-value=5.9e-21 Score=111.27 Aligned_cols=86 Identities=29% Similarity=0.495 Sum_probs=75.9
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC----CeEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC-
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP----AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA- 99 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~----~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~- 99 (123)
.++++++|.||++||++|+.+.|.++++++.+. ++.+..+|++..+.++++|+|.++||++++++|. ..++.|.
T Consensus 13 ~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-~~~~~G~~ 91 (104)
T cd03000 13 RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-AYNYRGPR 91 (104)
T ss_pred ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-ceeecCCC
Confidence 457899999999999999999999999999873 3889999999999999999999999999998774 4567787
Q ss_pred CHHHHHHHHHHH
Q 033251 100 KKDELQLAVEKH 111 (123)
Q Consensus 100 ~~~~l~~~l~~~ 111 (123)
+.+.|.+++++.
T Consensus 92 ~~~~l~~~~~~~ 103 (104)
T cd03000 92 TKDDIVEFANRV 103 (104)
T ss_pred CHHHHHHHHHhh
Confidence 788999988764
No 43
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.85 E-value=2.9e-20 Score=111.64 Aligned_cols=99 Identities=22% Similarity=0.365 Sum_probs=81.5
Q ss_pred HHHHHhhhhcC-CEEEEEEEcCCChhhhhhhHHHH---HHHhhCC-CeEEEEEecccc-------------hhHHHhcCc
Q 033251 17 NEQLQKGIAAK-KLIVVDFTASWCPPCKLMSPILS---ELAKKLP-AVIFLKVDVDEL-------------KSVAEEWAV 78 (123)
Q Consensus 17 ~~~~~~~~~~~-k~~vv~f~~~~C~~C~~~~~~~~---~~~~~~~-~v~~~~i~~~~~-------------~~~~~~~~i 78 (123)
.+.+.++..++ ++++|.||++||++|+.+.+.+. .+.+.+. ++.++.+|++.. ..++.+|++
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 34455555788 99999999999999999999874 4555553 588899998864 688999999
Q ss_pred ccccEEEEec-C-CeEEEEEccC-CHHHHHHHHHHHhccc
Q 033251 79 EAMPTFVLTK-E-GKVLERIVGA-KKDELQLAVEKHATTV 115 (123)
Q Consensus 79 ~~~Pt~~~~~-~-g~~~~~~~g~-~~~~l~~~l~~~~~~~ 115 (123)
.++||++++. + |+.+.++.|. +.+.+.++|+..+...
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhh
Confidence 9999988886 4 6999999999 7899999999887653
No 44
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.85 E-value=2.1e-20 Score=108.74 Aligned_cols=98 Identities=29% Similarity=0.507 Sum_probs=83.2
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC---CeEEEEEeccc-chhHHHhcCccccc
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDE-LKSVAEEWAVEAMP 82 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~---~v~~~~i~~~~-~~~~~~~~~i~~~P 82 (123)
+++++ .++|++.+. ..++++++.||++||++|+.+.|.+.++++.++ ++.++.+|++. ++.++++|+|.++|
T Consensus 2 ~~~l~-~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P 77 (105)
T cd02998 2 VVELT-DSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFP 77 (105)
T ss_pred eEEcc-hhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcC
Confidence 45664 578888663 356799999999999999999999999999986 49999999999 99999999999999
Q ss_pred EEEEecCC-eEEEEEccC-CHHHHHHHH
Q 033251 83 TFVLTKEG-KVLERIVGA-KKDELQLAV 108 (123)
Q Consensus 83 t~~~~~~g-~~~~~~~g~-~~~~l~~~l 108 (123)
+++++.+| +....+.|. +.+.|.+||
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 99999755 667777787 788887764
No 45
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.85 E-value=5.1e-20 Score=104.17 Aligned_cols=90 Identities=48% Similarity=0.869 Sum_probs=81.0
Q ss_pred hHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeEEE
Q 033251 15 SWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLE 94 (123)
Q Consensus 15 ~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 94 (123)
+|++.+ ..+++++++||++||+.|+.+.+.++++.+..+++.++.+|++..+.++..|++.++|+++++.+|+.+.
T Consensus 2 ~~~~~~----~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELI----KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHH----hcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 455555 4559999999999999999999999999999778999999999999999999999999999999999999
Q ss_pred EEccC-CHHHHHHHH
Q 033251 95 RIVGA-KKDELQLAV 108 (123)
Q Consensus 95 ~~~g~-~~~~l~~~l 108 (123)
.+.|. +.+.|.++|
T Consensus 78 ~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 RVVGADPKEELEEFL 92 (93)
T ss_pred EEecCCCHHHHHHHh
Confidence 99998 568888776
No 46
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.85 E-value=7.2e-20 Score=116.93 Aligned_cols=102 Identities=21% Similarity=0.455 Sum_probs=85.7
Q ss_pred CCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccE
Q 033251 4 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 4 ~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
-|.+.++ +..+|...+..+ .++.++||+||++||+.|+.+.|.+++++..|+.+.|+.||++.. ...|++.++||
T Consensus 81 ~G~v~ei-s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPT 155 (192)
T cd02988 81 FGEVYEI-SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPT 155 (192)
T ss_pred CCeEEEe-CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCE
Confidence 4778888 467888777542 345799999999999999999999999999999999999999864 58899999999
Q ss_pred EEEecCCeEEEEEccC--------CHHHHHHHHHH
Q 033251 84 FVLTKEGKVLERIVGA--------KKDELQLAVEK 110 (123)
Q Consensus 84 ~~~~~~g~~~~~~~g~--------~~~~l~~~l~~ 110 (123)
+++|++|+.+.++.|. +.+.|+.+|.+
T Consensus 156 lliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 156 ILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999999998875 34566655543
No 47
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.84 E-value=2.7e-20 Score=107.05 Aligned_cols=92 Identities=29% Similarity=0.511 Sum_probs=80.8
Q ss_pred hhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhC---CCeEEEEEecccchhHHHhcCcccccEEEEecC
Q 033251 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL---PAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89 (123)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~---~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~ 89 (123)
..+|.+.+ .++++++++||++||++|+.+.+.++++++.+ .++.++.+|++.+..++++|+|.++|+++++++
T Consensus 5 ~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 5 DDNFDELV----KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred HHHHHHHH----hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 45777777 55669999999999999999999999999998 469999999999999999999999999999976
Q ss_pred C-eEEEEEccC-CHHHHHHHH
Q 033251 90 G-KVLERIVGA-KKDELQLAV 108 (123)
Q Consensus 90 g-~~~~~~~g~-~~~~l~~~l 108 (123)
| +...++.|. +.+++.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 6 888888887 788887764
No 48
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.84 E-value=4e-20 Score=107.38 Aligned_cols=97 Identities=29% Similarity=0.525 Sum_probs=81.9
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC---eEEEEEecccchhHHHhcCcccccE
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA---VIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~---v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
+..+ +.++|++.+. ..+++++|+||++||++|+.+.|.+.++++.+++ +.++.+|++.+ +++..+++.++|+
T Consensus 2 v~~l-~~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt 76 (104)
T cd02995 2 VKVV-VGKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPT 76 (104)
T ss_pred eEEE-chhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCE
Confidence 3455 4678988885 3568999999999999999999999999998764 99999999987 5788999999999
Q ss_pred EEEecCCe--EEEEEccC-CHHHHHHHH
Q 033251 84 FVLTKEGK--VLERIVGA-KKDELQLAV 108 (123)
Q Consensus 84 ~~~~~~g~--~~~~~~g~-~~~~l~~~l 108 (123)
++++++|+ ...++.|. +.+.|.+||
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 99998876 56677888 778887764
No 49
>PTZ00062 glutaredoxin; Provisional
Probab=99.84 E-value=4.3e-20 Score=118.51 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=84.3
Q ss_pred eehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCC
Q 033251 11 HTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEG 90 (123)
Q Consensus 11 ~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g 90 (123)
.+.+++.+.+. ...+.+|++||++||+.|+.+.+.+.++++.|+++.|+.||.+ |+|.++|++++|++|
T Consensus 4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECC
Confidence 45677888773 1237789999999999999999999999999999999999987 999999999999999
Q ss_pred eEEEEEccCCHHHHHHHHHHHhccc
Q 033251 91 KVLERIVGAKKDELQLAVEKHATTV 115 (123)
Q Consensus 91 ~~~~~~~g~~~~~l~~~l~~~~~~~ 115 (123)
+.+.++.|.++..|...+.++....
T Consensus 73 ~~i~r~~G~~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 73 QLINSLEGCNTSTLVSFIRGWAQKG 97 (204)
T ss_pred EEEeeeeCCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999887643
No 50
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.84 E-value=8e-20 Score=107.35 Aligned_cols=101 Identities=23% Similarity=0.365 Sum_probs=81.7
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc-chhHHH-hcCcccc
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE-LKSVAE-EWAVEAM 81 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~-~~~~~~-~~~i~~~ 81 (123)
.++++ +.++|+..+.. ..++++++|.||++||++|+++.|.+.++++.+. ++.+..||++. ...++. .+++.++
T Consensus 2 ~v~~~-~~~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTL-SRAEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSF 79 (109)
T ss_pred cceec-cHHHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcC
Confidence 35566 46788877753 2578999999999999999999999999999986 49999999997 567776 5999999
Q ss_pred cEEEEecCC-eEEEEEccC--CHHHHHHHH
Q 033251 82 PTFVLTKEG-KVLERIVGA--KKDELQLAV 108 (123)
Q Consensus 82 Pt~~~~~~g-~~~~~~~g~--~~~~l~~~l 108 (123)
||+++|.+| +....+.|. +.+.|..||
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999654 566777774 677777764
No 51
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.83 E-value=1.3e-19 Score=107.28 Aligned_cols=98 Identities=22% Similarity=0.381 Sum_probs=81.9
Q ss_pred EEeehhhHHHHHHhhhhcCCEEEEEEEc-------CCChhhhhhhHHHHHHHhhCC-CeEEEEEeccc-------chhHH
Q 033251 9 SCHTVESWNEQLQKGIAAKKLIVVDFTA-------SWCPPCKLMSPILSELAKKLP-AVIFLKVDVDE-------LKSVA 73 (123)
Q Consensus 9 ~i~~~~~~~~~~~~~~~~~k~~vv~f~~-------~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~-------~~~~~ 73 (123)
.+.+.++|.+.+.. .++++++|.||+ +||++|+.+.|.++++...++ ++.++.||+++ +.++.
T Consensus 5 ~~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~ 82 (119)
T cd02952 5 AVRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR 82 (119)
T ss_pred cccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence 35677788888864 358999999999 999999999999999999998 69999999976 45889
Q ss_pred HhcCcc-cccEEEEecCCeEEEEEccCCHHHHHHHH
Q 033251 74 EEWAVE-AMPTFVLTKEGKVLERIVGAKKDELQLAV 108 (123)
Q Consensus 74 ~~~~i~-~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l 108 (123)
.+++|. ++||++++++|+.+....-.+.+.+..++
T Consensus 83 ~~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 83 TDPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred hccCcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 999998 99999999888666554444777776665
No 52
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.80 E-value=5.8e-19 Score=104.44 Aligned_cols=82 Identities=28% Similarity=0.457 Sum_probs=70.3
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC----CeEEEEEecc--cchhHHHhcCcc
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP----AVIFLKVDVD--ELKSVAEEWAVE 79 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~----~v~~~~i~~~--~~~~~~~~~~i~ 79 (123)
.++++ +.++|++.+.. .++++++.||++||++|+.+.|.++++++.+. .+.+..+|++ .+.+++++|++.
T Consensus 2 ~v~~l-~~~~f~~~i~~---~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~ 77 (114)
T cd02992 2 PVIVL-DAASFNSALLG---SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVT 77 (114)
T ss_pred CeEEC-CHHhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCC
Confidence 45666 46899998864 46899999999999999999999999998764 2889999975 467899999999
Q ss_pred cccEEEEecCCe
Q 033251 80 AMPTFVLTKEGK 91 (123)
Q Consensus 80 ~~Pt~~~~~~g~ 91 (123)
++||+++|++|+
T Consensus 78 ~~Pt~~lf~~~~ 89 (114)
T cd02992 78 GYPTLRYFPPFS 89 (114)
T ss_pred CCCEEEEECCCC
Confidence 999999998887
No 53
>PTZ00102 disulphide isomerase; Provisional
Probab=99.79 E-value=3.1e-18 Score=122.62 Aligned_cols=104 Identities=24% Similarity=0.470 Sum_probs=89.7
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhC----CCeEEEEEecccchhHHHhcCcccc
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL----PAVIFLKVDVDELKSVAEEWAVEAM 81 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~----~~v~~~~i~~~~~~~~~~~~~i~~~ 81 (123)
.+..+ +.++|++.+ .+++.++|.||++||++|+++.|.+.++++.+ .++.++.+|++.+.+++++|+|.++
T Consensus 33 ~v~~l-~~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~ 107 (477)
T PTZ00102 33 HVTVL-TDSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGY 107 (477)
T ss_pred CcEEc-chhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcc
Confidence 34455 457888877 56789999999999999999999999887665 3599999999999999999999999
Q ss_pred cEEEEecCCeEEEEEccC-CHHHHHHHHHHHhccc
Q 033251 82 PTFVLTKEGKVLERIVGA-KKDELQLAVEKHATTV 115 (123)
Q Consensus 82 Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~~ 115 (123)
||++++++|+.+ .+.|. +.+.|.+++.+.+...
T Consensus 108 Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~ 141 (477)
T PTZ00102 108 PTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGPA 141 (477)
T ss_pred cEEEEEECCceE-EecCCCCHHHHHHHHHHhhCCC
Confidence 999999998877 78888 8999999999987643
No 54
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.79 E-value=2.6e-18 Score=125.20 Aligned_cols=107 Identities=19% Similarity=0.410 Sum_probs=92.4
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHH---HHHHhhCCCeEEEEEecccc----hhHHHhcCc
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPIL---SELAKKLPAVIFLKVDVDEL----KSVAEEWAV 78 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~---~~~~~~~~~v~~~~i~~~~~----~~~~~~~~i 78 (123)
...++++.+++++.+.++..++|+++|+||++||++|+.+.+.+ .++.+.++++.++.+|++++ .++.++|++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC
Confidence 45678889999999988777899999999999999999998875 67888888899999999753 678899999
Q ss_pred ccccEEEEec-CCeEE--EEEccC-CHHHHHHHHHHHh
Q 033251 79 EAMPTFVLTK-EGKVL--ERIVGA-KKDELQLAVEKHA 112 (123)
Q Consensus 79 ~~~Pt~~~~~-~g~~~--~~~~g~-~~~~l~~~l~~~~ 112 (123)
.++|++++++ +|+++ .++.|. +.+++.+++++..
T Consensus 533 ~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 533 LGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 9999999995 88884 688898 8999999998753
No 55
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.79 E-value=3.1e-18 Score=121.91 Aligned_cols=104 Identities=24% Similarity=0.512 Sum_probs=90.7
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC----CeEEEEEecccchhHHHhcCccccc
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP----AVIFLKVDVDELKSVAEEWAVEAMP 82 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~----~v~~~~i~~~~~~~~~~~~~i~~~P 82 (123)
+..+ +.++|++.+ .++++++|.||++||++|+.+.|.+.++++.+. ++.++.+|++.+.+++++|+|.++|
T Consensus 3 v~~l-~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 77 (462)
T TIGR01130 3 VLVL-TKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYP 77 (462)
T ss_pred ceEC-CHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcccc
Confidence 4555 467888877 568899999999999999999999998887754 4999999999999999999999999
Q ss_pred EEEEecCCeE-EEEEccC-CHHHHHHHHHHHhccc
Q 033251 83 TFVLTKEGKV-LERIVGA-KKDELQLAVEKHATTV 115 (123)
Q Consensus 83 t~~~~~~g~~-~~~~~g~-~~~~l~~~l~~~~~~~ 115 (123)
|++++++|+. ...+.|. +.+.|.+++.+.+...
T Consensus 78 t~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 112 (462)
T TIGR01130 78 TLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPA 112 (462)
T ss_pred EEEEEeCCccceeEecCCCCHHHHHHHHHHhcCCC
Confidence 9999999887 7788888 8899999999987643
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.78 E-value=8.3e-18 Score=119.00 Aligned_cols=107 Identities=25% Similarity=0.350 Sum_probs=87.5
Q ss_pred CCCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecc-cchhHHH-hcCc
Q 033251 3 EEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVD-ELKSVAE-EWAV 78 (123)
Q Consensus 3 ~~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~-~~~~~~~-~~~i 78 (123)
.++.++.+ +.++|++.+... ..++++||+||++||++|+.+.|.+.++++.+. ++.|..+|++ .+..++. .|+|
T Consensus 343 ~~~~Vv~L-t~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I 420 (457)
T PLN02309 343 NSQNVVAL-SRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 420 (457)
T ss_pred CCCCcEEC-CHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC
Confidence 34566777 467898887532 589999999999999999999999999999986 4999999999 7778886 6999
Q ss_pred ccccEEEEecCCe-EEEEEcc-C-CHHHHHHHHHHH
Q 033251 79 EAMPTFVLTKEGK-VLERIVG-A-KKDELQLAVEKH 111 (123)
Q Consensus 79 ~~~Pt~~~~~~g~-~~~~~~g-~-~~~~l~~~l~~~ 111 (123)
.++||+++|++|. ....+.| . +.+.|..||+.+
T Consensus 421 ~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999997664 3334554 3 789999999864
No 57
>PTZ00102 disulphide isomerase; Provisional
Probab=99.78 E-value=4.7e-18 Score=121.71 Aligned_cols=108 Identities=25% Similarity=0.416 Sum_probs=91.7
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC---CeEEEEEecccchhHHHhcCccccc
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDELKSVAEEWAVEAMP 82 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~---~v~~~~i~~~~~~~~~~~~~i~~~P 82 (123)
.+..+ +.++|++.+. .++++++|.||++||++|+.+.|.++++++.++ .+.++.+|++.+...+.++++.++|
T Consensus 358 ~v~~l-~~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~P 433 (477)
T PTZ00102 358 PVKVV-VGNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFP 433 (477)
T ss_pred CeEEe-cccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccC
Confidence 45555 4688888763 578999999999999999999999999998876 3899999999998889999999999
Q ss_pred EEEEecCCeEE-EEEccC-CHHHHHHHHHHHhccccc
Q 033251 83 TFVLTKEGKVL-ERIVGA-KKDELQLAVEKHATTVEN 117 (123)
Q Consensus 83 t~~~~~~g~~~-~~~~g~-~~~~l~~~l~~~~~~~~~ 117 (123)
|++++++|+.+ .++.|. +.+.+.++|+++......
T Consensus 434 t~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~~ 470 (477)
T PTZ00102 434 TILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPFE 470 (477)
T ss_pred eEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCcc
Confidence 99999766544 578888 899999999999875433
No 58
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.9e-18 Score=121.20 Aligned_cols=108 Identities=24% Similarity=0.493 Sum_probs=95.5
Q ss_pred CCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC----CeEEEEEecccchhHHHhcCcc
Q 033251 4 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP----AVIFLKVDVDELKSVAEEWAVE 79 (123)
Q Consensus 4 ~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~----~v~~~~i~~~~~~~~~~~~~i~ 79 (123)
+..+.+++ .++|++.+ ..+..++|.||+|||++|+++.|.+.+.++... .+.++.||+..+.+++.+|+|.
T Consensus 24 ~~~Vl~Lt-~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~ 98 (493)
T KOG0190|consen 24 EEDVLVLT-KDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVR 98 (493)
T ss_pred ccceEEEe-cccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCC
Confidence 45667774 68999999 678899999999999999999999988887764 5999999999999999999999
Q ss_pred cccEEEEecCCeEEEEEccC-CHHHHHHHHHHHhcccc
Q 033251 80 AMPTFVLTKEGKVLERIVGA-KKDELQLAVEKHATTVE 116 (123)
Q Consensus 80 ~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~~~ 116 (123)
++||+.+|++|+....+.|. ..+.+..|+.+..+.+.
T Consensus 99 gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 99 GYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPAS 136 (493)
T ss_pred CCCeEEEEecCCcceeccCcccHHHHHHHHHhccCCCc
Confidence 99999999999987788888 79999999998776543
No 59
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.77 E-value=9.1e-18 Score=118.87 Aligned_cols=107 Identities=24% Similarity=0.305 Sum_probs=86.3
Q ss_pred CCCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccch-hHH-HhcCc
Q 033251 3 EEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDELK-SVA-EEWAV 78 (123)
Q Consensus 3 ~~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~~-~~~-~~~~i 78 (123)
.+..+++++ .++|++.+.. ...++++||.||++||++|+.+.|.++++++.+. ++.++.||++.+. .++ ++|+|
T Consensus 349 ~~~~Vv~L~-~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLS-RPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCCeEECC-HHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC
Confidence 355677774 5789998852 1579999999999999999999999999999986 3899999999764 444 68999
Q ss_pred ccccEEEEecCCe-EEEEEc-cC-CHHHHHHHHHHH
Q 033251 79 EAMPTFVLTKEGK-VLERIV-GA-KKDELQLAVEKH 111 (123)
Q Consensus 79 ~~~Pt~~~~~~g~-~~~~~~-g~-~~~~l~~~l~~~ 111 (123)
.++||+++|++|. ....+. |. +.+.|..||+.+
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9999999998774 334565 44 789999998753
No 60
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.76 E-value=1.5e-18 Score=103.06 Aligned_cols=103 Identities=17% Similarity=0.358 Sum_probs=77.5
Q ss_pred EeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEecccch-hHHHhcCccc--ccEEE
Q 033251 10 CHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELK-SVAEEWAVEA--MPTFV 85 (123)
Q Consensus 10 i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~~-~~~~~~~i~~--~Pt~~ 85 (123)
|.+. ++++.+..+..++++++|.||++||++|+.+.|.+.+...... +..|+.++++... .....|++.+ +||++
T Consensus 3 i~w~-~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~ 81 (117)
T cd02959 3 IHWV-TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRIL 81 (117)
T ss_pred ccce-eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEE
Confidence 4443 6888888888899999999999999999999999988766543 3556666766554 3457888876 99999
Q ss_pred Eec-CCeEEEE---EccC-CHHHHHHHHHHHhc
Q 033251 86 LTK-EGKVLER---IVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 86 ~~~-~g~~~~~---~~g~-~~~~l~~~l~~~~~ 113 (123)
++. +|+++.+ ..|. +.+.+...|+...+
T Consensus 82 f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 82 FLDPSGDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred EECCCCCCchhhccCCCCccccccCCCHHHHHh
Confidence 995 9998774 3444 45666666665543
No 61
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.75 E-value=3e-17 Score=91.53 Aligned_cols=79 Identities=33% Similarity=0.509 Sum_probs=69.2
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHHHHHHH
Q 033251 30 IVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLA 107 (123)
Q Consensus 30 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~ 107 (123)
.|..||++||++|+.+.+.++++++.++ ++.+..||.++++++.++|++.++|++++ +|+. ++.|. +.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 4678999999999999999999999886 49999999999999999999999999886 6653 66787 78999998
Q ss_pred HHHHh
Q 033251 108 VEKHA 112 (123)
Q Consensus 108 l~~~~ 112 (123)
|.+.+
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 87653
No 62
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.75 E-value=8.7e-17 Score=104.74 Aligned_cols=89 Identities=29% Similarity=0.399 Sum_probs=75.1
Q ss_pred cCCEEEEEEEc---CCChhhhhhhHHHHHHHhhCCCeE--EEEEecccchhHHHhcCcccccEEEEecCCeEEE-EEccC
Q 033251 26 AKKLIVVDFTA---SWCPPCKLMSPILSELAKKLPAVI--FLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLE-RIVGA 99 (123)
Q Consensus 26 ~~k~~vv~f~~---~~C~~C~~~~~~~~~~~~~~~~v~--~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~-~~~g~ 99 (123)
++...++.|++ +||++|+.+.|.++++++.++++. ++.+|.+++++++++|+|.++||+++|++|+... ++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 34455666877 999999999999999999998654 5566666999999999999999999999999874 88898
Q ss_pred -CHHHHHHHHHHHhcc
Q 033251 100 -KKDELQLAVEKHATT 114 (123)
Q Consensus 100 -~~~~l~~~l~~~~~~ 114 (123)
+.+++.++|+.++..
T Consensus 98 ~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 98 PAGYEFAALIEDIVRV 113 (215)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 788999999988643
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.73 E-value=3.2e-17 Score=95.14 Aligned_cols=86 Identities=21% Similarity=0.276 Sum_probs=77.7
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcc--cccEEEEecC--CeEEEEEccC-
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVE--AMPTFVLTKE--GKVLERIVGA- 99 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~--~~Pt~~~~~~--g~~~~~~~g~- 99 (123)
.++++++.|+++||++|..+.+.++++++++.+ +.|+.+|+++++.+++.|++. ++|+++++++ |+......|.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 378999999999999999999999999999975 999999999999999999999 9999999987 7666666666
Q ss_pred CHHHHHHHHHHH
Q 033251 100 KKDELQLAVEKH 111 (123)
Q Consensus 100 ~~~~l~~~l~~~ 111 (123)
+.+.|.+||++.
T Consensus 91 ~~~~l~~fi~~~ 102 (103)
T cd02982 91 TAESLEEFVEDF 102 (103)
T ss_pred CHHHHHHHHHhh
Confidence 789999999875
No 64
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.73 E-value=5.9e-17 Score=95.34 Aligned_cols=97 Identities=13% Similarity=0.216 Sum_probs=75.7
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEc--CCCh---hhhhhhHHHHHHHhhCCCeEEEEEec-----ccchhHHHhc
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTA--SWCP---PCKLMSPILSELAKKLPAVIFLKVDV-----DELKSVAEEW 76 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~--~~C~---~C~~~~~~~~~~~~~~~~v~~~~i~~-----~~~~~~~~~~ 76 (123)
++.+ +.++|++.+ .+++.++|.||+ +||+ +|..+.|.+.+-.. .+.+..||+ .++.+++++|
T Consensus 3 ~v~L-~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 3 CVDL-DTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred eeEC-ChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHh
Confidence 4556 468999988 678999999999 7777 66666555544432 389999999 4578899999
Q ss_pred Ccc--cccEEEEecCCe--EEEEEccC--CHHHHHHHHHHH
Q 033251 77 AVE--AMPTFVLTKEGK--VLERIVGA--KKDELQLAVEKH 111 (123)
Q Consensus 77 ~i~--~~Pt~~~~~~g~--~~~~~~g~--~~~~l~~~l~~~ 111 (123)
+|+ ++||+.+|++|. ....+.|. +.+.|.+||.+.
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 999999999884 33566774 688999998764
No 65
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.73 E-value=3.7e-17 Score=96.22 Aligned_cols=84 Identities=35% Similarity=0.564 Sum_probs=65.2
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHH---HhhCC-CeEEEEEecccc--------------------hhHHHhcCccc
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSEL---AKKLP-AVIFLKVDVDEL--------------------KSVAEEWAVEA 80 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~---~~~~~-~v~~~~i~~~~~--------------------~~~~~~~~i~~ 80 (123)
.++++++++|+++||++|+.+.+.+.+. ...+. ++.++.++++.. .++.+.|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 6899999999999999999999999854 44443 477888887643 35789999999
Q ss_pred ccEEEEec-CCeEEEEEccC-CHHHHHHHH
Q 033251 81 MPTFVLTK-EGKVLERIVGA-KKDELQLAV 108 (123)
Q Consensus 81 ~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~l 108 (123)
+||++++. +|+.+.++.|. ++++|..+|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999995 89999999999 788888765
No 66
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.71 E-value=2.4e-16 Score=100.51 Aligned_cols=90 Identities=16% Similarity=0.365 Sum_probs=73.9
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccch-----------------------hHHHhcCcccc
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELK-----------------------SVAEEWAVEAM 81 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~-----------------------~~~~~~~i~~~ 81 (123)
.++++++|+||++||++|+...|.++++.+. ++.++.|+.++.+ .+...|++.++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 3799999999999999999999999999764 7888888764432 23457889999
Q ss_pred cE-EEEecCCeEEEEEccC-CHHHHHHHHHHHhcccc
Q 033251 82 PT-FVLTKEGKVLERIVGA-KKDELQLAVEKHATTVE 116 (123)
Q Consensus 82 Pt-~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~~~ 116 (123)
|+ +++.++|++..++.|. +.+.+++.|+.+++...
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~ 180 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYS 180 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 95 6666899999999998 78899999998886543
No 67
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.71 E-value=3.9e-16 Score=101.67 Aligned_cols=82 Identities=18% Similarity=0.312 Sum_probs=71.9
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHHHH
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDEL 104 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l 104 (123)
++...|+.||++||++|..+.+.+++++..++++.+..+|.+.+++++.+|+|.++||++++++|+. +.|. +.++|
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l 208 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQF 208 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHH
Confidence 3445566699999999999999999999998889999999999999999999999999999988864 6777 67888
Q ss_pred HHHHHH
Q 033251 105 QLAVEK 110 (123)
Q Consensus 105 ~~~l~~ 110 (123)
.++|.+
T Consensus 209 ~~~l~~ 214 (215)
T TIGR02187 209 LEYILS 214 (215)
T ss_pred HHHHHh
Confidence 888875
No 68
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.69 E-value=6.9e-16 Score=97.43 Aligned_cols=87 Identities=26% Similarity=0.477 Sum_probs=71.6
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc-----------------------cchhHHHhcCcccc
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-----------------------ELKSVAEEWAVEAM 81 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~-----------------------~~~~~~~~~~i~~~ 81 (123)
.++++++++||++||+.|+...|.++++.+. ++.++.|+.+ ....+.++|++.++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 4689999999999999999999999999765 5666666542 23355677899999
Q ss_pred cE-EEEecCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 82 PT-FVLTKEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 82 Pt-~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
|+ +++.++|+++.++.|. +.+++.++|.++++
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 95 6666899999999998 89999999998875
No 69
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.68 E-value=1e-15 Score=91.49 Aligned_cols=93 Identities=22% Similarity=0.163 Sum_probs=70.3
Q ss_pred HHHhhhhcCCEEEEEEEcCCChhhhhhhHHH---HHHHhhC-CCeEEEEEecccchhHHHh--------cCcccccEEEE
Q 033251 19 QLQKGIAAKKLIVVDFTASWCPPCKLMSPIL---SELAKKL-PAVIFLKVDVDELKSVAEE--------WAVEAMPTFVL 86 (123)
Q Consensus 19 ~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~---~~~~~~~-~~v~~~~i~~~~~~~~~~~--------~~i~~~Pt~~~ 86 (123)
.+..+.+++|+++|+|+++||++|+.+.+.. .++.+.. .++.++.+|.++.+++.+. |++.++|++++
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf 86 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF 86 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4555568999999999999999999998643 4565553 4799999999988776543 58999999888
Q ss_pred e-cCCeEEEEEccCCH------HHHHHHHHHH
Q 033251 87 T-KEGKVLERIVGAKK------DELQLAVEKH 111 (123)
Q Consensus 87 ~-~~g~~~~~~~g~~~------~~l~~~l~~~ 111 (123)
+ .+|+++....+... ..++.++++.
T Consensus 87 l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 87 LTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred ECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 8 68999987766622 3555555544
No 70
>PHA02125 thioredoxin-like protein
Probab=99.68 E-value=1e-15 Score=84.17 Aligned_cols=69 Identities=29% Similarity=0.639 Sum_probs=58.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccCC--HHHHHHH
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK--KDELQLA 107 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~--~~~l~~~ 107 (123)
+++||++||++|+.+.|.++++. +.++.+|.+.+++++++|+|.++||++ +|+.+.++.|.+ ..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999997653 467889999999999999999999987 688888888984 3555554
No 71
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.68 E-value=2.1e-16 Score=105.32 Aligned_cols=101 Identities=25% Similarity=0.506 Sum_probs=86.1
Q ss_pred hhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC----eEEEEEecccchhHHHhcCcccccEEEEec
Q 033251 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA----VIFLKVDVDELKSVAEEWAVEAMPTFVLTK 88 (123)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~----v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~ 88 (123)
..+++..+... +.+..+++.||+|||++|+++.|.|.++.....+ +++..+|+...+.++..|+|+++||+.+++
T Consensus 30 VeDLddkFkdn-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~k 108 (468)
T KOG4277|consen 30 VEDLDDKFKDN-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFK 108 (468)
T ss_pred hhhhhHHhhhc-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEec
Confidence 35666666553 6778999999999999999999999999877763 899999999999999999999999999999
Q ss_pred CCeEEEEEccCCHHHHHHHHHHHhcc
Q 033251 89 EGKVLERIVGAKKDELQLAVEKHATT 114 (123)
Q Consensus 89 ~g~~~~~~~g~~~~~l~~~l~~~~~~ 114 (123)
++..+..-.|...+.+..+-.++.+.
T Consensus 109 gd~a~dYRG~R~Kd~iieFAhR~a~a 134 (468)
T KOG4277|consen 109 GDHAIDYRGGREKDAIIEFAHRCAAA 134 (468)
T ss_pred CCeeeecCCCccHHHHHHHHHhcccc
Confidence 99888765555788898888877543
No 72
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.67 E-value=1.1e-15 Score=109.73 Aligned_cols=86 Identities=20% Similarity=0.400 Sum_probs=73.1
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEe----------------------------cccchhHHH
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVD----------------------------VDELKSVAE 74 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~----------------------------~~~~~~~~~ 74 (123)
.++|++||.||++||++|+...|.++++.+.+. ++.++.|. .|.+..+.+
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 479999999999999999999999999999886 56665553 244567888
Q ss_pred hcCcccccEE-EEecCCeEEEEEccC-CHHHHHHHHHH
Q 033251 75 EWAVEAMPTF-VLTKEGKVLERIVGA-KKDELQLAVEK 110 (123)
Q Consensus 75 ~~~i~~~Pt~-~~~~~g~~~~~~~g~-~~~~l~~~l~~ 110 (123)
.|+|.++|+. +++++|+++.++.|. +.++|+.+|+.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 9999999986 555899999999999 88999998883
No 73
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.67 E-value=3.1e-15 Score=100.32 Aligned_cols=88 Identities=26% Similarity=0.321 Sum_probs=71.8
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc-----------chhHHHhcCcccccEEEEecC--Ce
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE-----------LKSVAEEWAVEAMPTFVLTKE--GK 91 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~-----------~~~~~~~~~i~~~Pt~~~~~~--g~ 91 (123)
..++++|++||++||++|+.+.|.++++.+.++ +.+..|++|. +..++++|+|.++|++++++. |+
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 468999999999999999999999999999985 6666666654 346789999999999888853 45
Q ss_pred EEEEEccC-CHHHHHHHHHHHhc
Q 033251 92 VLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 92 ~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
+.....|. +.++|.+.|.....
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 55556687 88899888887765
No 74
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.67 E-value=1.2e-15 Score=91.72 Aligned_cols=78 Identities=26% Similarity=0.475 Sum_probs=64.3
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEec-----------------------ccchhHHHhcCcccc
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV-----------------------DELKSVAEEWAVEAM 81 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~-----------------------~~~~~~~~~~~i~~~ 81 (123)
.+++++||+||++||+.|....|.++++.+.+ ++.++.|+. |....+++.|++.++
T Consensus 23 ~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 23 LKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 46899999999999999999999999999887 466666653 344567788999999
Q ss_pred cE-EEEecCCeEEEEEccC-CHHH
Q 033251 82 PT-FVLTKEGKVLERIVGA-KKDE 103 (123)
Q Consensus 82 Pt-~~~~~~g~~~~~~~g~-~~~~ 103 (123)
|+ +++.++|+++.++.|. +.+.
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHh
Confidence 95 6666899999999998 5543
No 75
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.66 E-value=3.5e-15 Score=92.25 Aligned_cols=87 Identities=18% Similarity=0.322 Sum_probs=65.6
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc------------hhHH-Hhc---CcccccEEEEe-
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL------------KSVA-EEW---AVEAMPTFVLT- 87 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~------------~~~~-~~~---~i~~~Pt~~~~- 87 (123)
..++..+|+||++||++|++..|.++++.+++ ++.++.|+.+.. .... ..| ++.++|+.+++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 45667799999999999999999999999998 456666665532 2222 345 78999985555
Q ss_pred cCCe-EEEEEccC-CHHHHHHHHHHHh
Q 033251 88 KEGK-VLERIVGA-KKDELQLAVEKHA 112 (123)
Q Consensus 88 ~~g~-~~~~~~g~-~~~~l~~~l~~~~ 112 (123)
++|+ ....+.|. +.+++++.|++++
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 5665 45578888 8889998888764
No 76
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.65 E-value=6.5e-15 Score=87.09 Aligned_cols=100 Identities=18% Similarity=0.287 Sum_probs=82.3
Q ss_pred hhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHH---HHHHhhCC-CeEEEEEecc--cchhHHHhcCcccccEEEEe
Q 033251 14 ESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPIL---SELAKKLP-AVIFLKVDVD--ELKSVAEEWAVEAMPTFVLT 87 (123)
Q Consensus 14 ~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~---~~~~~~~~-~v~~~~i~~~--~~~~~~~~~~i~~~Pt~~~~ 87 (123)
.+|++.++.|..++|+++|+|+++||++|+.+...+ .++.+... +..++.+|.+ +...++..|++.++|+++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 367888888889999999999999999999997643 44444443 5777788886 45678899999999998877
Q ss_pred -c-CCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 88 -K-EGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 88 -~-~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
. +|+.+.+..|. +++++...|++...
T Consensus 84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 84 DPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred eCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 4 79999999999 89999999888754
No 77
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.65 E-value=2.2e-15 Score=107.33 Aligned_cols=104 Identities=31% Similarity=0.500 Sum_probs=85.1
Q ss_pred CcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC----eEEEEEecccchhHHHhcCccc
Q 033251 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA----VIFLKVDVDELKSVAEEWAVEA 80 (123)
Q Consensus 5 ~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~----v~~~~i~~~~~~~~~~~~~i~~ 80 (123)
+.+..+ +..+|++.+. ..++.++|+||++||++|+.+.|.++++++.+.+ +.++.+|++.+. +.. +++.+
T Consensus 346 ~~v~~l-~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~ 419 (462)
T TIGR01130 346 GPVKVL-VGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEG 419 (462)
T ss_pred CccEEe-eCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccc
Confidence 344555 4688888874 4789999999999999999999999999999864 889999999764 334 99999
Q ss_pred ccEEEEecCCeEE--EEEccC-CHHHHHHHHHHHhcc
Q 033251 81 MPTFVLTKEGKVL--ERIVGA-KKDELQLAVEKHATT 114 (123)
Q Consensus 81 ~Pt~~~~~~g~~~--~~~~g~-~~~~l~~~l~~~~~~ 114 (123)
+|++++|++|... ..+.|. +.+.|.++|.+....
T Consensus 420 ~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 456 (462)
T TIGR01130 420 FPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATF 456 (462)
T ss_pred cCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCC
Confidence 9999999877543 456676 899999999887643
No 78
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.65 E-value=2e-15 Score=81.15 Aligned_cols=62 Identities=26% Similarity=0.440 Sum_probs=56.1
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeEE
Q 033251 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVL 93 (123)
Q Consensus 30 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 93 (123)
-+..|+++||++|..+.+.++++.+.++++.+..+|++++++++++|++.++|++++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 467899999999999999999999888889999999999999999999999999877 55544
No 79
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.65 E-value=7.1e-15 Score=83.21 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=66.6
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHHH
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDE 103 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~ 103 (123)
-++..-+..|+++||++|....+.++++++.++++.+..+|.++.++++.+|+|.++|++++ +|+.+.. |. +.++
T Consensus 10 l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e 85 (89)
T cd03026 10 LNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEE 85 (89)
T ss_pred cCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHH
Confidence 36778899999999999999999999999999999999999999999999999999999976 7877664 65 4444
Q ss_pred H
Q 033251 104 L 104 (123)
Q Consensus 104 l 104 (123)
+
T Consensus 86 ~ 86 (89)
T cd03026 86 I 86 (89)
T ss_pred H
Confidence 3
No 80
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.64 E-value=1.2e-14 Score=87.20 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=86.6
Q ss_pred hhHHHHHHhhhhcCCEEEEEEEcC--CChhhhhhhHHHHHHHhhCC-C-eEEEEEecccchhHHHhcCcccccEEEEecC
Q 033251 14 ESWNEQLQKGIAAKKLIVVDFTAS--WCPPCKLMSPILSELAKKLP-A-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89 (123)
Q Consensus 14 ~~~~~~~~~~~~~~k~~vv~f~~~--~C~~C~~~~~~~~~~~~~~~-~-v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~ 89 (123)
.+++..+ ..+...+++|-++ -++.+....-.+.++++.|+ + +.++.+|+++++.++.+|||.++||+++|++
T Consensus 25 ~~~~~~~----~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fkd 100 (132)
T PRK11509 25 SRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTG 100 (132)
T ss_pred ccHHHHH----hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEEC
Confidence 5566666 3455666666653 67999999999999999998 3 9999999999999999999999999999999
Q ss_pred CeEEEEEccC-CHHHHHHHHHHHhccccc
Q 033251 90 GKVLERIVGA-KKDELQLAVEKHATTVEN 117 (123)
Q Consensus 90 g~~~~~~~g~-~~~~l~~~l~~~~~~~~~ 117 (123)
|+.+.+..|. +.+++.++|+++++....
T Consensus 101 Gk~v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 101 GNYRGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred CEEEEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 9999999999 899999999999986543
No 81
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8.2e-16 Score=108.89 Aligned_cols=101 Identities=27% Similarity=0.460 Sum_probs=84.0
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC---CeEEEEEecccchhHHHhcCcccccE
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~---~v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
+..+ -.++|+.++. .++|-++|.||++||++|+++.|.+++|++.|. ++.+.+||.+.|. .....+.++||
T Consensus 368 Vkvv-Vgknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPT 441 (493)
T KOG0190|consen 368 VKVV-VGKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPT 441 (493)
T ss_pred eEEE-eecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--Cccccccccce
Confidence 4444 4689999884 689999999999999999999999999999997 4999999999875 45667888999
Q ss_pred EEEecCCe--EEEEEccC-CHHHHHHHHHHHhc
Q 033251 84 FVLTKEGK--VLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 84 ~~~~~~g~--~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
|.+++.|. -...+.|. +.++|..++++.-.
T Consensus 442 I~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 442 ILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 99997654 34456777 78999999987764
No 82
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.63 E-value=6.6e-15 Score=81.08 Aligned_cols=70 Identities=21% Similarity=0.415 Sum_probs=56.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC--CHHHHHHHH
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA--KKDELQLAV 108 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~l 108 (123)
|.||++||+.|+.+.|.++++.++++. +.++.+| + .+.+.+|++.++|++++ +|+.+ +.|. +.+++.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 789999999999999999999999874 7777776 2 33478899999999999 88877 5564 457777765
No 83
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.62 E-value=2e-15 Score=100.39 Aligned_cols=97 Identities=28% Similarity=0.576 Sum_probs=83.2
Q ss_pred hhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhC----C--CeEEEEEecccchhHHHhcCcccccEEEEe
Q 033251 14 ESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL----P--AVIFLKVDVDELKSVAEEWAVEAMPTFVLT 87 (123)
Q Consensus 14 ~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~----~--~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~ 87 (123)
.+++.++ .....++|.||++||+.++.+.|.+++.++.+ | .+.+..|||+++..++.+|.|..+||+-+|
T Consensus 4 ~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf 79 (375)
T KOG0912|consen 4 ENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF 79 (375)
T ss_pred ccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee
Confidence 4566666 56899999999999999999999998776654 5 399999999999999999999999999999
Q ss_pred cCCeEEE-EEccC-CHHHHHHHHHHHhcc
Q 033251 88 KEGKVLE-RIVGA-KKDELQLAVEKHATT 114 (123)
Q Consensus 88 ~~g~~~~-~~~g~-~~~~l~~~l~~~~~~ 114 (123)
++|.... .+-|. +.+.|.++|++.+..
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHhcc
Confidence 9999888 44455 678899999887654
No 84
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.60 E-value=1.1e-14 Score=83.30 Aligned_cols=66 Identities=41% Similarity=0.737 Sum_probs=53.7
Q ss_pred CCEEEEEEEcCCChhhhhhhHHHHHHHhhCC---CeEEEEEecccc-------------------------hhHHHhcCc
Q 033251 27 KKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDEL-------------------------KSVAEEWAV 78 (123)
Q Consensus 27 ~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~---~v~~~~i~~~~~-------------------------~~~~~~~~i 78 (123)
||+++|+||++||+.|....|.+.++.+.++ ++.++.|+.++. ..+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999998 699999888642 356788999
Q ss_pred ccccEEEEe-cCCeE
Q 033251 79 EAMPTFVLT-KEGKV 92 (123)
Q Consensus 79 ~~~Pt~~~~-~~g~~ 92 (123)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999986666 57753
No 85
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.59 E-value=4.9e-14 Score=88.72 Aligned_cols=87 Identities=33% Similarity=0.604 Sum_probs=73.6
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc----------------------chhHHHhcCccc
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE----------------------LKSVAEEWAVEA 80 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~----------------------~~~~~~~~~i~~ 80 (123)
.++++++|+||++||++|+...+.+.++.+.++ ++.++.++.+. ...+.+.|++..
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 138 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC
Confidence 368999999999999999999999999999986 38888888753 356788999999
Q ss_pred ccEEEEe-cCCeEEEEEccC-CHHHHHHHHHHH
Q 033251 81 MPTFVLT-KEGKVLERIVGA-KKDELQLAVEKH 111 (123)
Q Consensus 81 ~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l~~~ 111 (123)
+|+++++ ++|+++..+.|. +.+++.+.+++.
T Consensus 139 ~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 139 LPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred cCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 9975555 699999888888 788898888764
No 86
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.58 E-value=1.1e-14 Score=87.28 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=66.3
Q ss_pred EEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHH---HHHHhhCC-CeEEEEEecccchhHHHhcCcccccEE
Q 033251 9 SCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPIL---SELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTF 84 (123)
Q Consensus 9 ~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~---~~~~~~~~-~v~~~~i~~~~~~~~~~~~~i~~~Pt~ 84 (123)
+|++..+|++.+..+.+++|+++|+|+++||++|+.+...+ .++.+... ++.++.++.+....-....+ .++||+
T Consensus 5 ~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPti 83 (130)
T cd02960 5 DIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRI 83 (130)
T ss_pred cccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeE
Confidence 46677789999999999999999999999999999998765 34444332 56666776653211111233 689998
Q ss_pred EEe-cCCeEEEEEccC
Q 033251 85 VLT-KEGKVLERIVGA 99 (123)
Q Consensus 85 ~~~-~~g~~~~~~~g~ 99 (123)
+++ .+|+++.+..|+
T Consensus 84 vFld~~g~vi~~i~Gy 99 (130)
T cd02960 84 MFVDPSLTVRADITGR 99 (130)
T ss_pred EEECCCCCCccccccc
Confidence 888 688888887776
No 87
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2e-14 Score=100.81 Aligned_cols=91 Identities=29% Similarity=0.475 Sum_probs=81.1
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHH
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKD 102 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~ 102 (123)
..+++.++.||++||++|..+.|.+++++..+.+ +.+..+|++.+..++++|+|.++||+.+|..|.....+.|. +.+
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~ 124 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAE 124 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHH
Confidence 6889999999999999999999999999999987 99999999999999999999999999999988445555566 788
Q ss_pred HHHHHHHHHhccc
Q 033251 103 ELQLAVEKHATTV 115 (123)
Q Consensus 103 ~l~~~l~~~~~~~ 115 (123)
.+..++...+...
T Consensus 125 ~~~~~~~~~~~~~ 137 (383)
T KOG0191|consen 125 SLAEFLIKELEPS 137 (383)
T ss_pred HHHHHHHHhhccc
Confidence 8988888877654
No 88
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.58 E-value=2e-14 Score=86.79 Aligned_cols=71 Identities=28% Similarity=0.626 Sum_probs=58.0
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC----CeEEEEEecccc------------------------hhHHHhc
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP----AVIFLKVDVDEL------------------------KSVAEEW 76 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~----~v~~~~i~~~~~------------------------~~~~~~~ 76 (123)
.++++++|+||++||+.|+...|.++++.+.+. ++.++.|+.+.. ..++++|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 468999999999999999999999998877763 577777776533 3567889
Q ss_pred CcccccEEEEe-cCCeEEEE
Q 033251 77 AVEAMPTFVLT-KEGKVLER 95 (123)
Q Consensus 77 ~i~~~Pt~~~~-~~g~~~~~ 95 (123)
++.++|+++++ ++|+++.+
T Consensus 96 ~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 96 KIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCCEEEEECCCCCEEcc
Confidence 99999997777 58887765
No 89
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.58 E-value=2.6e-14 Score=87.60 Aligned_cols=71 Identities=25% Similarity=0.556 Sum_probs=57.4
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC---------CeEEEEEecccc-------------------------h
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---------AVIFLKVDVDEL-------------------------K 70 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~---------~v~~~~i~~~~~-------------------------~ 70 (123)
.++|+++|+||++||++|+.+.|.+.++.+.+. ++.++.|+.+.. .
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 479999999999999999999999998765432 588888887532 2
Q ss_pred hHHHhcCcccccEEEEe-cCCeEEEE
Q 033251 71 SVAEEWAVEAMPTFVLT-KEGKVLER 95 (123)
Q Consensus 71 ~~~~~~~i~~~Pt~~~~-~~g~~~~~ 95 (123)
.+.++|++.++|+.+++ ++|+++.+
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEee
Confidence 46678899999985555 68999887
No 90
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.57 E-value=5.3e-14 Score=83.96 Aligned_cols=82 Identities=28% Similarity=0.585 Sum_probs=64.0
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEec---------------------ccchhHHHhcCcccccE
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV---------------------DELKSVAEEWAVEAMPT 83 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~---------------------~~~~~~~~~~~i~~~Pt 83 (123)
.++++++|+||++||+.|+...|.+.++.+.+. +..+.++- +.+..++++|++.++|+
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 467999999999999999999999999988753 22222221 34457889999999999
Q ss_pred EEEecCCeEEEEEccC-CHHHHHHH
Q 033251 84 FVLTKEGKVLERIVGA-KKDELQLA 107 (123)
Q Consensus 84 ~~~~~~g~~~~~~~g~-~~~~l~~~ 107 (123)
++++.++++..++.|. +.+.|.+.
T Consensus 97 ~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 97 IVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEcCCCeEEEEeccCCHHHHHhh
Confidence 8888644488899998 78887654
No 91
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.57 E-value=5.1e-14 Score=108.74 Aligned_cols=89 Identities=26% Similarity=0.396 Sum_probs=75.5
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC--eEEEEEec---------------------------ccchhHHHh
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA--VIFLKVDV---------------------------DELKSVAEE 75 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~--v~~~~i~~---------------------------~~~~~~~~~ 75 (123)
.++|++||.||++||++|+...|.++++.++|++ +.++.|.. +....+.++
T Consensus 418 lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 418 LKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred cCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 3799999999999999999999999999999974 77776642 123456788
Q ss_pred cCcccccEEEEe-cCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 76 WAVEAMPTFVLT-KEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 76 ~~i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
|++.++|+++++ ++|+++.++.|. ..+.+.++|++.+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 999999998888 799999999998 78899999998865
No 92
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.56 E-value=3.6e-14 Score=85.91 Aligned_cols=72 Identities=32% Similarity=0.621 Sum_probs=58.0
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC----CeEEEEEecccch-------------------------hHHHh
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP----AVIFLKVDVDELK-------------------------SVAEE 75 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~----~v~~~~i~~~~~~-------------------------~~~~~ 75 (123)
.+||+++|+||++||+.|+...|.++++.+.+. ++.++.|+.+... .+.+.
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 478999999999999999999999999887764 4777777766432 34567
Q ss_pred cCcccccEEEEe-cCCeEEEEE
Q 033251 76 WAVEAMPTFVLT-KEGKVLERI 96 (123)
Q Consensus 76 ~~i~~~Pt~~~~-~~g~~~~~~ 96 (123)
|++.++|+++++ ++|+++.+.
T Consensus 95 ~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred cCCCCCCEEEEECCCCCEEchh
Confidence 999999997777 588877653
No 93
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.56 E-value=6.9e-14 Score=81.73 Aligned_cols=73 Identities=38% Similarity=0.739 Sum_probs=65.1
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhC--CCeEEEEEecccc-----------------------hhHHHhcCccc
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKL--PAVIFLKVDVDEL-----------------------KSVAEEWAVEA 80 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~--~~v~~~~i~~~~~-----------------------~~~~~~~~i~~ 80 (123)
.+++++++||++||+.|....+.+.++.+.+ +++.++.|+.+.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 5899999999999999999999999999999 5799999999875 67889999999
Q ss_pred ccEEEEe-cCCeEEEEEcc
Q 033251 81 MPTFVLT-KEGKVLERIVG 98 (123)
Q Consensus 81 ~Pt~~~~-~~g~~~~~~~g 98 (123)
+|+++++ ++|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9987666 68999988765
No 94
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.56 E-value=1.3e-13 Score=87.01 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=66.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc-------------hhHHHhcCc--ccccE-EEEecCCeEE-
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL-------------KSVAEEWAV--EAMPT-FVLTKEGKVL- 93 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~-------------~~~~~~~~i--~~~Pt-~~~~~~g~~~- 93 (123)
+|.||++||++|+++.|.++++.+++ ++.++.|+.+.. ..+...|++ .++|+ +++.++|+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77899999999999999999999998 567766666532 235678885 69997 5666899886
Q ss_pred EEEccC-CHHHHHHHHHHHhcc
Q 033251 94 ERIVGA-KKDELQLAVEKHATT 114 (123)
Q Consensus 94 ~~~~g~-~~~~l~~~l~~~~~~ 114 (123)
..+.|. +.+++.+.|++.++.
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 578888 889999999988865
No 95
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.53 E-value=1.7e-13 Score=82.34 Aligned_cols=75 Identities=20% Similarity=0.343 Sum_probs=61.8
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecc---------------------------cchhHHHh
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVD---------------------------ELKSVAEE 75 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~---------------------------~~~~~~~~ 75 (123)
.+++++||+||++||+.|....|.++++.+++. ++.++.|+.+ ....+.+.
T Consensus 21 ~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 21 LRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred hCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 378999999999999999999999999999997 4788777541 12356677
Q ss_pred cCcccccEEEEe-cCCeEEEEEccC
Q 033251 76 WAVEAMPTFVLT-KEGKVLERIVGA 99 (123)
Q Consensus 76 ~~i~~~Pt~~~~-~~g~~~~~~~g~ 99 (123)
|++.++|+.+++ ++|+++..+.|.
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEecC
Confidence 899999986666 689999998874
No 96
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=8.2e-15 Score=104.34 Aligned_cols=109 Identities=22% Similarity=0.403 Sum_probs=85.3
Q ss_pred CCCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC----eEEEEEecc--cchhHHHhc
Q 033251 3 EEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA----VIFLKVDVD--ELKSVAEEW 76 (123)
Q Consensus 3 ~~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~----v~~~~i~~~--~~~~~~~~~ 76 (123)
.+.+++++ +.++|+..+. .+.+..+|.||++||++|+++.|.++++++...+ +.+..|||- .|..+|+.|
T Consensus 37 ~~D~ii~L-d~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef 112 (606)
T KOG1731|consen 37 PDDPIIEL-DVDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREF 112 (606)
T ss_pred CCCCeEEe-ehhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhc
Confidence 44566777 5889999885 4557899999999999999999999999988652 888999995 577899999
Q ss_pred CcccccEEEEecCC----eEEEEEccC-CHHHHHHHHHHHhccc
Q 033251 77 AVEAMPTFVLTKEG----KVLERIVGA-KKDELQLAVEKHATTV 115 (123)
Q Consensus 77 ~i~~~Pt~~~~~~g----~~~~~~~g~-~~~~l~~~l~~~~~~~ 115 (123)
+|.++|++.+|+.+ ..=....|. ...+++..+.+.+...
T Consensus 113 ~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~ 156 (606)
T KOG1731|consen 113 SVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEE 156 (606)
T ss_pred CCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHH
Confidence 99999999999533 111234454 4678888888777543
No 97
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.52 E-value=2.5e-13 Score=87.55 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=71.4
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc-----------chhHHHhcCc-------------
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE-----------LKSVAEEWAV------------- 78 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~-----------~~~~~~~~~i------------- 78 (123)
.+|+++||.||++||++|....|.++++.+.+. ++.++.|++++ ...+++++++
T Consensus 37 ~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~ 116 (199)
T PTZ00056 37 LKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE 116 (199)
T ss_pred hCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence 368999999999999999999999999999986 58888887631 1233444332
Q ss_pred -----------------------cccc----EEEEecCCeEEEEEccC-CHHHHHHHHHHHhccc
Q 033251 79 -----------------------EAMP----TFVLTKEGKVLERIVGA-KKDELQLAVEKHATTV 115 (123)
Q Consensus 79 -----------------------~~~P----t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~~ 115 (123)
..+| ++++.++|+++.++.|. +.+.+.+.|+++++..
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVK 181 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1123 57777999999999998 7889999999988754
No 98
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.50 E-value=1.4e-13 Score=76.83 Aligned_cols=76 Identities=30% Similarity=0.593 Sum_probs=60.0
Q ss_pred ehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHH---HHHHh-hCCCeEEEEEecccchhHHHhcCcccccEEEEe
Q 033251 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPIL---SELAK-KLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLT 87 (123)
Q Consensus 12 ~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~---~~~~~-~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~ 87 (123)
+..++++.+..|.+++|+++|+|+++||+.|+.+...+ .++.+ ...++.++.+|.+...... .+...++|+++++
T Consensus 2 W~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~~~~P~~~~l 80 (82)
T PF13899_consen 2 WQSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDRQGYPTFFFL 80 (82)
T ss_dssp EESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHHCSSSEEEEE
T ss_pred hhhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCCccCCEEEEe
Confidence 45689999999999999999999999999999998777 45544 2247999999998765533 3333679998887
Q ss_pred c
Q 033251 88 K 88 (123)
Q Consensus 88 ~ 88 (123)
.
T Consensus 81 d 81 (82)
T PF13899_consen 81 D 81 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 99
>smart00594 UAS UAS domain.
Probab=99.49 E-value=9.2e-13 Score=78.78 Aligned_cols=96 Identities=17% Similarity=0.275 Sum_probs=75.5
Q ss_pred hhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHH---HHHHhhCC-CeEEEEEecc--cchhHHHhcCcccccEEEE
Q 033251 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPIL---SELAKKLP-AVIFLKVDVD--ELKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~---~~~~~~~~-~v~~~~i~~~--~~~~~~~~~~i~~~Pt~~~ 86 (123)
..+|++.+..+..++|+++|+|+++||+.|..+...+ .++.+... ++.+..+|++ +...++.+|++.++|++++
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 3478888888888999999999999999999987654 44444443 5777777765 4567899999999999888
Q ss_pred e-cCC-----eEEEEEccC-CHHHHHHHH
Q 033251 87 T-KEG-----KVLERIVGA-KKDELQLAV 108 (123)
Q Consensus 87 ~-~~g-----~~~~~~~g~-~~~~l~~~l 108 (123)
+ .+| +++.+..|. ++++|...|
T Consensus 93 l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 93 VDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 8 444 467788899 788888765
No 100
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.48 E-value=5.2e-13 Score=81.97 Aligned_cols=76 Identities=41% Similarity=0.707 Sum_probs=63.7
Q ss_pred hcCCEEEEEEEcC-CChhhhhhhHHHHHHHhhCC--CeEEEEEeccc---------------------chhHHHhcCcc-
Q 033251 25 AAKKLIVVDFTAS-WCPPCKLMSPILSELAKKLP--AVIFLKVDVDE---------------------LKSVAEEWAVE- 79 (123)
Q Consensus 25 ~~~k~~vv~f~~~-~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~---------------------~~~~~~~~~i~- 79 (123)
.++|++||.||++ |||+|+...|.+.++.+.+. ++.++.|..+. ...+.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 4799999999999 99999999999999988854 58887777643 34677889988
Q ss_pred --------cccE-EEEecCCeEEEEEccCC
Q 033251 80 --------AMPT-FVLTKEGKVLERIVGAK 100 (123)
Q Consensus 80 --------~~Pt-~~~~~~g~~~~~~~g~~ 100 (123)
++|+ +++.++|+++....|..
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~ 135 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPD 135 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSB
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCC
Confidence 9997 56668999999999993
No 101
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.47 E-value=3.6e-13 Score=96.67 Aligned_cols=102 Identities=23% Similarity=0.424 Sum_probs=84.6
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHH---HHHHhhCCCeEEEEEecccc----hhHHHhcCccc
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPIL---SELAKKLPAVIFLKVDVDEL----KSVAEEWAVEA 80 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~---~~~~~~~~~v~~~~i~~~~~----~~~~~~~~i~~ 80 (123)
..+.+.+++++.+.+ .++|+++++||++||-.|+.+++.. .+...+.+|+.+.+.|.+++ .++.++|++-+
T Consensus 457 q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 556666678888865 3456999999999999999998887 45666677999999999865 46679999999
Q ss_pred ccEEEEec-CCeEEEEEccC-CHHHHHHHHHHH
Q 033251 81 MPTFVLTK-EGKVLERIVGA-KKDELQLAVEKH 111 (123)
Q Consensus 81 ~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~l~~~ 111 (123)
+|++++|. +|++.....|. +.+.+.+++++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999996 78777778888 899999998875
No 102
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.47 E-value=1.1e-12 Score=83.10 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=64.2
Q ss_pred hhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEE------EEEeccc-----------------------------
Q 033251 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIF------LKVDVDE----------------------------- 68 (123)
Q Consensus 24 ~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~------~~i~~~~----------------------------- 68 (123)
...||+.||.||++||++|+...|.+.++.+. ++.+ ..||.++
T Consensus 56 ~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 56 ELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred HcCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 35799999999999999999999999999754 3444 4555543
Q ss_pred chhHHHhcCccccc-E-EEEecCCeEEEEEccC-CHHHHHHH
Q 033251 69 LKSVAEEWAVEAMP-T-FVLTKEGKVLERIVGA-KKDELQLA 107 (123)
Q Consensus 69 ~~~~~~~~~i~~~P-t-~~~~~~g~~~~~~~g~-~~~~l~~~ 107 (123)
...+..+|++.++| + +++.++|+++.++.|. +.+++.+.
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTV 175 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence 22355688999997 5 5777899999999999 77766663
No 103
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.46 E-value=1e-12 Score=77.61 Aligned_cols=100 Identities=20% Similarity=0.402 Sum_probs=67.3
Q ss_pred EeehhhHHHHHHhhhhcCCEEEEEEEc-------CCChhhhhhhHHHHHHHhhCC-CeEEEEEeccc-------chhHHH
Q 033251 10 CHTVESWNEQLQKGIAAKKLIVVDFTA-------SWCPPCKLMSPILSELAKKLP-AVIFLKVDVDE-------LKSVAE 74 (123)
Q Consensus 10 i~~~~~~~~~~~~~~~~~k~~vv~f~~-------~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~-------~~~~~~ 74 (123)
|...++|.+.+.....++++++|+|++ +|||.|....|.+++.....+ +..++.+.+.. +..+..
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 556788888888765678899999986 699999999999999888876 68888887743 234444
Q ss_pred --hcCcccccEEEEecCCeEEEEEccCCHHHHHHHHH
Q 033251 75 --EWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 109 (123)
Q Consensus 75 --~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~ 109 (123)
+++++++||++-+.+++.+....-.+.+.++.+++
T Consensus 82 ~p~~~l~~IPTLi~~~~~~rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETGERLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp --CC---SSSEEEECTSS-EEEHHHHH-HHHHHHHHH
T ss_pred cceeeeeecceEEEECCCCccchhhhccHHHHHHHhc
Confidence 59999999999998874433222225677777665
No 104
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.46 E-value=1.5e-12 Score=85.64 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=69.5
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc--------c---hhHH-HhcC-------------
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE--------L---KSVA-EEWA------------- 77 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~--------~---~~~~-~~~~------------- 77 (123)
.+++++||.||++||+.|....|.++++.+++. ++.++.|+++. . .+++ ++++
T Consensus 97 ~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 97 FKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred hCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 368999999999999999999999999999986 58888888631 1 1222 2222
Q ss_pred ---------------------cccccE-EEEecCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 78 ---------------------VEAMPT-FVLTKEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 78 ---------------------i~~~Pt-~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
+...|+ +++.++|+++.++.|. ++++|+..|+++++
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 122464 7777899999999999 78999999998874
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.46 E-value=1.6e-12 Score=83.19 Aligned_cols=86 Identities=20% Similarity=0.386 Sum_probs=63.3
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc--------------------cchhHHHhcCcccccE-
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD--------------------ELKSVAEEWAVEAMPT- 83 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~--------------------~~~~~~~~~~i~~~Pt- 83 (123)
.++|+++++||++||+.|+...|.++++.+.+ ++.++.++.+ ...++.++|++..+|+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 47899999999999999999999999998765 4444444321 1345678899999997
Q ss_pred EEEecCCeEEEEEccCCHHHHHHHHHHH
Q 033251 84 FVLTKEGKVLERIVGAKKDELQLAVEKH 111 (123)
Q Consensus 84 ~~~~~~g~~~~~~~g~~~~~l~~~l~~~ 111 (123)
+++.++|++..+......+.+.++++..
T Consensus 151 ~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 5556799888763222567777777654
No 106
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.46 E-value=8.3e-13 Score=77.78 Aligned_cols=70 Identities=19% Similarity=0.356 Sum_probs=51.8
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEec---ccc-----------------hhHHHhcCcccccEE
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDV---DEL-----------------KSVAEEWAVEAMPTF 84 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~---~~~-----------------~~~~~~~~i~~~Pt~ 84 (123)
+++++||+||++||+.|+...|.++++.+.+. ++.++.+.- ++. ..+.++|++..+|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 48999999999999999999999999988875 466665521 111 234566778888975
Q ss_pred EEe-cCCeEEEE
Q 033251 85 VLT-KEGKVLER 95 (123)
Q Consensus 85 ~~~-~~g~~~~~ 95 (123)
+++ ++|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 555 57877654
No 107
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.41 E-value=1.5e-12 Score=86.96 Aligned_cols=106 Identities=24% Similarity=0.449 Sum_probs=82.6
Q ss_pred CCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccE
Q 033251 4 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 4 ~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
-|.+.+|.+.++|.+.+... .++..|||+||.+.++.|..+...+..|+..|+.++|+.|..+..+ +...|.+..+|+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPt 201 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPT 201 (265)
T ss_dssp --SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred CceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCE
Confidence 36778888888888887542 4567899999999999999999999999999999999999998765 678999999999
Q ss_pred EEEecCCeEEEEEccCC--------HHHHHHHHHHH
Q 033251 84 FVLTKEGKVLERIVGAK--------KDELQLAVEKH 111 (123)
Q Consensus 84 ~~~~~~g~~~~~~~g~~--------~~~l~~~l~~~ 111 (123)
+++|++|..+..+.|.. ...|+.+|.++
T Consensus 202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999999887761 35677776655
No 108
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.40 E-value=6.3e-12 Score=77.88 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=68.4
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEec--------cc---chhHHHh-cC-------------
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDV--------DE---LKSVAEE-WA------------- 77 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~--------~~---~~~~~~~-~~------------- 77 (123)
.+||++||.||++||++|....|.++++.+.+. ++.++.|++ +. ...++++ ++
T Consensus 20 ~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~ 99 (153)
T TIGR02540 20 YRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILG 99 (153)
T ss_pred hCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCC
Confidence 478999999999999999999999999999986 588888875 11 1222321 21
Q ss_pred ----------c---cccc-----EEEEecCCeEEEEEccC-CHHHHHHHHHHHh
Q 033251 78 ----------V---EAMP-----TFVLTKEGKVLERIVGA-KKDELQLAVEKHA 112 (123)
Q Consensus 78 ----------i---~~~P-----t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 112 (123)
+ ..+| ++++.++|+++.++.|. +.+.+.+.|++++
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 100 SEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 1 1377 68888999999999999 7888888887753
No 109
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.3e-11 Score=75.18 Aligned_cols=94 Identities=19% Similarity=0.318 Sum_probs=76.5
Q ss_pred HHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHH---HHHHhhCC-CeEEEEEeccc----------------chhHHHh
Q 033251 16 WNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPIL---SELAKKLP-AVIFLKVDVDE----------------LKSVAEE 75 (123)
Q Consensus 16 ~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~---~~~~~~~~-~v~~~~i~~~~----------------~~~~~~~ 75 (123)
+.....++..++|..+++|-++.|++|.+++..+ +++.+.+. ++.++++++.. ..++++.
T Consensus 31 ~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k 110 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK 110 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHH
Confidence 3444555568999999999999999999998877 55666654 48888888742 2489999
Q ss_pred cCcccccEEEEe-cCCeEEEEEccC-CHHHHHHHHH
Q 033251 76 WAVEAMPTFVLT-KEGKVLERIVGA-KKDELQLAVE 109 (123)
Q Consensus 76 ~~i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l~ 109 (123)
|+++++|++++| +.|+.+....|+ +++++...++
T Consensus 111 f~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 111 FAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred hccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 999999999999 578999999999 8888876655
No 110
>PLN02412 probable glutathione peroxidase
Probab=99.39 E-value=9.5e-12 Score=78.19 Aligned_cols=90 Identities=18% Similarity=0.212 Sum_probs=70.0
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecc--------cchhH----HHhcC-------------
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVD--------ELKSV----AEEWA------------- 77 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~--------~~~~~----~~~~~------------- 77 (123)
.++|++||.||++||+.|....|.++++.+.|. ++.++.|+++ ...++ +++++
T Consensus 27 ~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 27 YKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred hCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 368999999999999999999999999999997 4888888763 21111 12211
Q ss_pred ---------------------cccccE-EEEecCCeEEEEEccC-CHHHHHHHHHHHhcc
Q 033251 78 ---------------------VEAMPT-FVLTKEGKVLERIVGA-KKDELQLAVEKHATT 114 (123)
Q Consensus 78 ---------------------i~~~Pt-~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~ 114 (123)
+...|+ +++.++|+++.++.|. +.+++...|+++++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 223475 6666899999999999 788999999998864
No 111
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.39 E-value=6.6e-12 Score=75.63 Aligned_cols=85 Identities=28% Similarity=0.536 Sum_probs=58.2
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhc---CcccccEEEEe-cCCeEEEEEccCC
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEW---AVEAMPTFVLT-KEGKVLERIVGAK 100 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~---~i~~~Pt~~~~-~~g~~~~~~~g~~ 100 (123)
...+.-++.|..+|||.|....|.+.++++..|++.+..+..|++.++..+| |..++|+++++ .+|+++.++ |..
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-ger 117 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW-GER 117 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE-ESS
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE-cCC
Confidence 3566789999999999999999999999999999999999999998887665 67889999999 467888885 666
Q ss_pred HHHHHHHHHH
Q 033251 101 KDELQLAVEK 110 (123)
Q Consensus 101 ~~~l~~~l~~ 110 (123)
+..+.+++++
T Consensus 118 P~~~~~~~~~ 127 (129)
T PF14595_consen 118 PKEVQELVDE 127 (129)
T ss_dssp -HHHH-----
T ss_pred CHHHhhcccc
Confidence 6666666654
No 112
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.37 E-value=2.8e-11 Score=76.23 Aligned_cols=92 Identities=25% Similarity=0.402 Sum_probs=72.8
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc-----------------------------chhHHH
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE-----------------------------LKSVAE 74 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~-----------------------------~~~~~~ 74 (123)
+++++|++||++||+.|....+.+.++.+.++ ++.++.|+.+. ...+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 68999999999999999999999999999987 58888887653 124566
Q ss_pred hcCcccccEEEEe-cCCeEEEEEc------c----CCHHHHHHHHHHHhccccc
Q 033251 75 EWAVEAMPTFVLT-KEGKVLERIV------G----AKKDELQLAVEKHATTVEN 117 (123)
Q Consensus 75 ~~~i~~~Pt~~~~-~~g~~~~~~~------g----~~~~~l~~~l~~~~~~~~~ 117 (123)
.|++..+|+++++ ++|+++.... + .+.+++.+.|+..+...+.
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 157 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPV 157 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence 8899999975555 6898886631 1 1468899999999875543
No 113
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=99.36 E-value=4.3e-11 Score=69.01 Aligned_cols=95 Identities=22% Similarity=0.332 Sum_probs=71.6
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchh----HHHhcCccc-c
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKS----VAEEWAVEA-M 81 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~----~~~~~~i~~-~ 81 (123)
..+++.+++++++.. +.+++++|+-.++.||-+......+++.....++ +.++++|+-+.++ ++++|||.+ -
T Consensus 2 ~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 467889999999976 6799999999999999999999999999999886 9999999988765 578999998 8
Q ss_pred cEEEEecCCeEEEEEccC--CHHHH
Q 033251 82 PTFVLTKEGKVLERIVGA--KKDEL 104 (123)
Q Consensus 82 Pt~~~~~~g~~~~~~~g~--~~~~l 104 (123)
|.++++++|+++..-.+. +.+.|
T Consensus 80 PQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 80 PQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp SEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred CcEEEEECCEEEEECccccCCHHhc
Confidence 999999999999876655 56555
No 114
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.34 E-value=1.5e-11 Score=66.72 Aligned_cols=68 Identities=29% Similarity=0.613 Sum_probs=54.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchh----HHHhcCcccccEEEEecCCeEEEEEccCCHHHHHH
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKS----VAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQL 106 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 106 (123)
+..|+++||++|+...+.+.+ .++.+..+|+++++. +.+.+++.++|++++. |+. ..|.+++.|++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 467999999999999988865 378889999987654 4567999999999885 544 66778888887
Q ss_pred HH
Q 033251 107 AV 108 (123)
Q Consensus 107 ~l 108 (123)
+|
T Consensus 72 ~i 73 (74)
T TIGR02196 72 LL 73 (74)
T ss_pred Hh
Confidence 76
No 115
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.34 E-value=4e-11 Score=78.10 Aligned_cols=82 Identities=28% Similarity=0.371 Sum_probs=67.2
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc-----------cchhHHHhcCcccccEEEEe-cC-CeE
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-----------ELKSVAEEWAVEAMPTFVLT-KE-GKV 92 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~-----------~~~~~~~~~~i~~~Pt~~~~-~~-g~~ 92 (123)
.++..+++||.+.|++|+.+.|.++.+++.| ++.+..|++| .+..++++++|..+|++++. .+ ++.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 5889999999999999999999999999999 7777777666 34678899999999987666 33 466
Q ss_pred EEEEccC-CHHHHHHHH
Q 033251 93 LERIVGA-KKDELQLAV 108 (123)
Q Consensus 93 ~~~~~g~-~~~~l~~~l 108 (123)
.....|. +.++|.+.|
T Consensus 198 ~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEeeecCCHHHHHHhh
Confidence 6677788 788877643
No 116
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.33 E-value=1.4e-11 Score=76.30 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=61.6
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc-----------chhHHHh-cC-------------
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE-----------LKSVAEE-WA------------- 77 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~-----------~~~~~~~-~~------------- 77 (123)
.++|++||.||++||+ |....|.++++.+++. ++.++.|+++. ...++++ ++
T Consensus 20 ~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~ 98 (152)
T cd00340 20 YKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNG 98 (152)
T ss_pred hCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccC
Confidence 3689999999999999 9999999999999996 58888886531 1223322 22
Q ss_pred ----------ccccc------------EEEEecCCeEEEEEccC-CHHHHHHH
Q 033251 78 ----------VEAMP------------TFVLTKEGKVLERIVGA-KKDELQLA 107 (123)
Q Consensus 78 ----------i~~~P------------t~~~~~~g~~~~~~~g~-~~~~l~~~ 107 (123)
+..+| ++++.++|+++.++.|. +.+.+.+.
T Consensus 99 ~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 99 ENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 57777899999999998 67766543
No 117
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.5e-11 Score=86.42 Aligned_cols=104 Identities=30% Similarity=0.443 Sum_probs=86.8
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC---CeEEEEEecccchhHHHhcCcccccE
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~---~v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
+... +.+++..... ..+...++.||+|||++|+.+.|.++++...+. ++.+..+|++.+..++..+++..+|+
T Consensus 146 v~~l-~~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt 221 (383)
T KOG0191|consen 146 VFEL-TKDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPT 221 (383)
T ss_pred eEEc-cccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCce
Confidence 4444 3456666553 467789999999999999999999999998874 59999999998999999999999999
Q ss_pred EEEecCCeE-EEEEccC-CHHHHHHHHHHHhcc
Q 033251 84 FVLTKEGKV-LERIVGA-KKDELQLAVEKHATT 114 (123)
Q Consensus 84 ~~~~~~g~~-~~~~~g~-~~~~l~~~l~~~~~~ 114 (123)
+++|+.|.. ...+.|. +.+.+.+++......
T Consensus 222 ~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 222 LKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 999988777 5566666 789999999988766
No 118
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.4e-11 Score=78.77 Aligned_cols=92 Identities=26% Similarity=0.535 Sum_probs=77.8
Q ss_pred CcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccchhHHHhcCcc---
Q 033251 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDELKSVAEEWAVE--- 79 (123)
Q Consensus 5 ~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~~~~~~~~~i~--- 79 (123)
+.+...++...+++.+.. .+....+|.|++.|.+.|+.+.|.+.+++..|. +++|..+|+...++.+.+|+|.
T Consensus 124 e~ikyf~~~q~~deel~r--nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDR--NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred hheeeecchhhHHHHhcc--CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCc
Confidence 344555566677777754 577799999999999999999999999999997 4999999999999999999874
Q ss_pred ---cccEEEEecCCeEEEEEcc
Q 033251 80 ---AMPTFVLTKEGKVLERIVG 98 (123)
Q Consensus 80 ---~~Pt~~~~~~g~~~~~~~g 98 (123)
..||+++|++|+++.+...
T Consensus 202 ~srQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred ccccCCeEEEEccchhhhcCcc
Confidence 5999999999998876543
No 119
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.25 E-value=8.2e-11 Score=71.57 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=64.3
Q ss_pred cCCEEEEEEE-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc---------------------chhHHHhcCcccc
Q 033251 26 AKKLIVVDFT-ASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE---------------------LKSVAEEWAVEAM 81 (123)
Q Consensus 26 ~~k~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~---------------------~~~~~~~~~i~~~ 81 (123)
++++++|.|| +.||+.|....+.+.++.+.+. ++.++.|..+. ...+.+.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 5899999999 6899999999999999988875 58888887643 3456777888887
Q ss_pred ---------cEEEEe-cCCeEEEEEccC-CHHHHHHH
Q 033251 82 ---------PTFVLT-KEGKVLERIVGA-KKDELQLA 107 (123)
Q Consensus 82 ---------Pt~~~~-~~g~~~~~~~g~-~~~~l~~~ 107 (123)
|+.+++ ++|+++..+.|. ..+.+.+.
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 865454 689999999999 45555544
No 120
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.24 E-value=2e-10 Score=63.14 Aligned_cols=71 Identities=30% Similarity=0.620 Sum_probs=57.6
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEcc-C-CHHHHHHHHH
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVG-A-KKDELQLAVE 109 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~-~~~~l~~~l~ 109 (123)
.+++++|+.|..+...++++...+ ++.+-.++....+++ .+||+.++|++++ ||+.. +.| . +.++|+++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEecCCCHHHHHHHhC
Confidence 347888999999999999999998 588888888777776 9999999999977 67654 457 4 6788888875
No 121
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.24 E-value=6.6e-10 Score=65.82 Aligned_cols=97 Identities=12% Similarity=0.226 Sum_probs=77.7
Q ss_pred hHHHHHHhhhhcCCEEEEEEEcC----CChhhhhh--hHHHHHHHhhCCCeEEEEEeccc--chhHHHhcCcccccEEEE
Q 033251 15 SWNEQLQKGIAAKKLIVVDFTAS----WCPPCKLM--SPILSELAKKLPAVIFLKVDVDE--LKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 15 ~~~~~~~~~~~~~k~~vv~f~~~----~C~~C~~~--~~~~~~~~~~~~~v~~~~i~~~~--~~~~~~~~~i~~~Pt~~~ 86 (123)
+|.+.+..+..++|+++|+++++ ||.+|+.. .|.+-++.+. +..+...|++. ...++..+++.++|++++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~ 82 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAM 82 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEE
Confidence 57778888888999999999999 88999766 4555555543 68888888864 456889999999999777
Q ss_pred e---c-CCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 87 T---K-EGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 87 ~---~-~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
+ . +.+++.+..|. ++++|...|...+.
T Consensus 83 l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 83 IMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 7 2 34678999999 89999999888765
No 122
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.23 E-value=1.1e-10 Score=67.85 Aligned_cols=83 Identities=42% Similarity=0.771 Sum_probs=68.8
Q ss_pred CCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecc-cchhHHHhcC--cccccEEEEecCCeEEEEEcc--C-
Q 033251 27 KKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVD-ELKSVAEEWA--VEAMPTFVLTKEGKVLERIVG--A- 99 (123)
Q Consensus 27 ~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~-~~~~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g--~- 99 (123)
++++++.||++||++|+.+.|.+.++.+.+++ +.+..++.. ....+...|+ +..+|+++++.+|.......+ .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 88999999999999999999999999999984 999999997 7888899999 999999998887766655555 3
Q ss_pred CHHHHHHHHH
Q 033251 100 KKDELQLAVE 109 (123)
Q Consensus 100 ~~~~l~~~l~ 109 (123)
....+.....
T Consensus 112 ~~~~~~~~~~ 121 (127)
T COG0526 112 PKEALIDALG 121 (127)
T ss_pred CHHHHHHHhc
Confidence 4444444433
No 123
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=99.22 E-value=6.1e-10 Score=73.98 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=69.5
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc-----------hhHHHhcCcccccEEEEe-cC-CeE
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL-----------KSVAEEWAVEAMPTFVLT-KE-GKV 92 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~-----------~~~~~~~~i~~~Pt~~~~-~~-g~~ 92 (123)
.++..+++||.+.|++|+++.|.++.+++.| ++.+..|++|.. ...+++++++.+|++++. .+ ++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 5669999999999999999999999999998 566666655543 457889999999986666 34 666
Q ss_pred EEEEccC-CHHHHHHHHHHHhcc
Q 033251 93 LERIVGA-KKDELQLAVEKHATT 114 (123)
Q Consensus 93 ~~~~~g~-~~~~l~~~l~~~~~~ 114 (123)
.....|. +.++|.+.|......
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLTQ 250 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHhc
Confidence 6666788 888988887766543
No 124
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.21 E-value=1.4e-10 Score=72.91 Aligned_cols=92 Identities=24% Similarity=0.391 Sum_probs=84.0
Q ss_pred CCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccE
Q 033251 4 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 4 ~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
.|...+|.+..+|.+.. .+..-+|+.||.+.-..|+-+...++.++..+.+.+|+.||+...|=++.+++|.-+|+
T Consensus 65 hG~y~ev~~Ekdf~~~~----~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~ 140 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEV----KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPT 140 (211)
T ss_pred CceEEEeccHHHHHHHh----hcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeee
Confidence 35667888788888777 56778899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCeEEEEEccC
Q 033251 84 FVLTKEGKVLERIVGA 99 (123)
Q Consensus 84 ~~~~~~g~~~~~~~g~ 99 (123)
+++|.+|+.+.++.|.
T Consensus 141 v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 141 VALFKNGKTVDYVVGF 156 (211)
T ss_pred EEEEEcCEEEEEEeeH
Confidence 9999999999998876
No 125
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.20 E-value=1.9e-10 Score=68.47 Aligned_cols=70 Identities=31% Similarity=0.607 Sum_probs=58.0
Q ss_pred cCCEEEEEEEcC-CChhhhhhhHHHHHHHhhCC--CeEEEEEeccc---------------------chhHHHhcCcc--
Q 033251 26 AKKLIVVDFTAS-WCPPCKLMSPILSELAKKLP--AVIFLKVDVDE---------------------LKSVAEEWAVE-- 79 (123)
Q Consensus 26 ~~k~~vv~f~~~-~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~---------------------~~~~~~~~~i~-- 79 (123)
.++++||.||.. ||+.|....+.++++...++ ++.++.|+.+. ...+.+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 689999999999 99999999999999998876 78998888753 34677888888
Q ss_pred ----cccE-EEEecCCeEEEE
Q 033251 80 ----AMPT-FVLTKEGKVLER 95 (123)
Q Consensus 80 ----~~Pt-~~~~~~g~~~~~ 95 (123)
.+|+ +++.++|+++.+
T Consensus 104 ~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp TTSEESEEEEEEETTSBEEEE
T ss_pred cCCceEeEEEEECCCCEEEeC
Confidence 8996 555578887653
No 126
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.19 E-value=2.9e-10 Score=69.52 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=64.0
Q ss_pred cCCEEEEEEEcCC-ChhhhhhhHHHHHHHhhCCCeEEEEEecccc-----------------------hhHHHhcCccc-
Q 033251 26 AKKLIVVDFTASW-CPPCKLMSPILSELAKKLPAVIFLKVDVDEL-----------------------KSVAEEWAVEA- 80 (123)
Q Consensus 26 ~~k~~vv~f~~~~-C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~-----------------------~~~~~~~~i~~- 80 (123)
.+|++||.||+.| |+.|....+.++++.+.++++.++.|+.+.. ..+.+.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 6899999999998 6999999999999999998888888887531 34566777753
Q ss_pred -----ccE-EEEecCCeEEEEEccCC---HHHHHHHH
Q 033251 81 -----MPT-FVLTKEGKVLERIVGAK---KDELQLAV 108 (123)
Q Consensus 81 -----~Pt-~~~~~~g~~~~~~~g~~---~~~l~~~l 108 (123)
.|+ +++.++|+++..+.|.. ...+.+.|
T Consensus 105 ~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 105 DLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred cCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 575 55557999999988762 34555544
No 127
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=99.19 E-value=1.1e-09 Score=65.03 Aligned_cols=104 Identities=21% Similarity=0.349 Sum_probs=83.5
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCccccc-EE
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMP-TF 84 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~P-t~ 84 (123)
+.++++..+.++++.. ..+|.+++-|..+|-+.|.++...+.++++...+ ..++.+|+++-+.+.+.|.+. .| |+
T Consensus 2 L~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tv 78 (133)
T PF02966_consen 2 LPHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTV 78 (133)
T ss_dssp SEEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEE
T ss_pred CcccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEE
Confidence 3578889999998876 7899999999999999999999999999999887 788899999999999999999 88 57
Q ss_pred EEecCCeEEEEEccC-----------CHHHHHHHHHHHhc
Q 033251 85 VLTKEGKVLERIVGA-----------KKDELQLAVEKHAT 113 (123)
Q Consensus 85 ~~~~~g~~~~~~~g~-----------~~~~l~~~l~~~~~ 113 (123)
++|-+++.+..-.|. +.+++...++..-.
T Consensus 79 mFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyr 118 (133)
T PF02966_consen 79 MFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYR 118 (133)
T ss_dssp EEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHH
T ss_pred EEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHH
Confidence 777677766654443 24677777776543
No 128
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.7e-10 Score=67.24 Aligned_cols=77 Identities=32% Similarity=0.549 Sum_probs=62.0
Q ss_pred ehhhHHHHHHhhhhcCCEEEEEEEc--------CCChhhhhhhHHHHHHHhhCC-CeEEEEEeccc-------chhHHHh
Q 033251 12 TVESWNEQLQKGIAAKKLIVVDFTA--------SWCPPCKLMSPILSELAKKLP-AVIFLKVDVDE-------LKSVAEE 75 (123)
Q Consensus 12 ~~~~~~~~~~~~~~~~k~~vv~f~~--------~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~-------~~~~~~~ 75 (123)
-.++|++.+.+- .+++.++++|++ +|||.|.+..|.+.+..+..+ ++.|+.+++.+ +..+...
T Consensus 11 g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 11 GYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred hHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccC
Confidence 456777777653 577778899986 799999999999999998777 69999998854 3456677
Q ss_pred cCc-ccccEEEEecC
Q 033251 76 WAV-EAMPTFVLTKE 89 (123)
Q Consensus 76 ~~i-~~~Pt~~~~~~ 89 (123)
.++ +.+||++-+++
T Consensus 90 ~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKR 104 (128)
T ss_pred CCceeecceeeEEcC
Confidence 777 99999999974
No 129
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.18 E-value=3.1e-10 Score=62.16 Aligned_cols=70 Identities=19% Similarity=0.413 Sum_probs=50.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHh-----cCcccccEEEEecCCeEEEEEccCCHHHHH
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEE-----WAVEAMPTFVLTKEGKVLERIVGAKKDELQ 105 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~-----~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~ 105 (123)
+..|+++||++|+++++.+.++ ++.+..+|+++.+..... +++.++|++ ++.+|+.+. ..+..++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHHH
Confidence 5689999999999999988765 455667888877665544 388999997 466775433 45555665
Q ss_pred HHHH
Q 033251 106 LAVE 109 (123)
Q Consensus 106 ~~l~ 109 (123)
+.|.
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 5543
No 130
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.18 E-value=3.7e-10 Score=71.96 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=66.6
Q ss_pred hcCCEE-EEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc-------c-h---hH-HHhc-------------
Q 033251 25 AAKKLI-VVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE-------L-K---SV-AEEW------------- 76 (123)
Q Consensus 25 ~~~k~~-vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~-------~-~---~~-~~~~------------- 76 (123)
.+||++ |+.+|++||++|....|.++++.+.|. ++.++.|+++. . . .+ .+++
T Consensus 38 ~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~ 117 (183)
T PTZ00256 38 FKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVN 117 (183)
T ss_pred hCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecC
Confidence 368865 456699999999999999999999987 58888887531 0 0 11 1111
Q ss_pred -----------------------CcccccE----EEEecCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 77 -----------------------AVEAMPT----FVLTKEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 77 -----------------------~i~~~Pt----~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
++.++|+ +++.++|+++.++.|. +.+.+.+.|.++++
T Consensus 118 g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 118 GENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 2346783 8888999999999998 78888888888764
No 131
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=6.4e-10 Score=65.33 Aligned_cols=105 Identities=21% Similarity=0.385 Sum_probs=86.6
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcccccEEE
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFV 85 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~Pt~~ 85 (123)
+.++.|.+..++.+.. ...+.+|+-|..+|.|.|.++...+.++++...+ ..++-+|+++.+++.+.|++...|+++
T Consensus 5 Lp~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvm 82 (142)
T KOG3414|consen 5 LPTLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVM 82 (142)
T ss_pred ccccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEE
Confidence 3467788888988875 6899999999999999999999999999999998 777888999999999999999999998
Q ss_pred EecCCeEEEEEccC-----------CHHHHHHHHHHHhc
Q 033251 86 LTKEGKVLERIVGA-----------KKDELQLAVEKHAT 113 (123)
Q Consensus 86 ~~~~g~~~~~~~g~-----------~~~~l~~~l~~~~~ 113 (123)
+|-+++.+..-.|. +.+++...++..-.
T Consensus 83 fFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 83 FFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred EEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHH
Confidence 88777666533332 34677777766543
No 132
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.15 E-value=7.1e-10 Score=69.70 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=60.8
Q ss_pred hcCCEEEEEEEcCC-ChhhhhhhHHHHHHHhhCCCeEEEEEeccc-----------------------chhHHHhcCccc
Q 033251 25 AAKKLIVVDFTASW-CPPCKLMSPILSELAKKLPAVIFLKVDVDE-----------------------LKSVAEEWAVEA 80 (123)
Q Consensus 25 ~~~k~~vv~f~~~~-C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~-----------------------~~~~~~~~~i~~ 80 (123)
-++|++||.||..| |+.|....+.++++.+.+.++.++.|+.|. ...+++.||+..
T Consensus 42 ~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 42 FAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred hCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 36899999999999 999999999999999998788888887743 226678888877
Q ss_pred cc---------E-EEEecCCeEEEEEccC
Q 033251 81 MP---------T-FVLTKEGKVLERIVGA 99 (123)
Q Consensus 81 ~P---------t-~~~~~~g~~~~~~~g~ 99 (123)
.| + +++.++|+++..+.+.
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~~ 150 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELVP 150 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEECC
Confidence 66 5 5555799999988543
No 133
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=99.15 E-value=7.2e-10 Score=73.06 Aligned_cols=81 Identities=15% Similarity=0.334 Sum_probs=62.5
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEec--------------------------------------
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV-------------------------------------- 66 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~-------------------------------------- 66 (123)
.+++..|+.|..+.||+|+++.+.+.++.+. ++.+..+..
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 4678899999999999999999999988653 455544422
Q ss_pred ------ccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHHHHHHHHHHH
Q 033251 67 ------DELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKH 111 (123)
Q Consensus 67 ------~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 111 (123)
+++.++++++||.++|+++ +.+|+.+ .|. +.++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 1134677889999999998 6678655 687 789999988753
No 134
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.13 E-value=1.5e-09 Score=68.58 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=65.3
Q ss_pred cCCEEEEEEE-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccc----------------------------hhHHH
Q 033251 26 AKKLIVVDFT-ASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDEL----------------------------KSVAE 74 (123)
Q Consensus 26 ~~k~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~----------------------------~~~~~ 74 (123)
++|++||+|| +.||+.|....+.++++.+.+. ++.++.|+.+.. ..+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5799999999 8999999999999999999885 577777766432 23455
Q ss_pred hcCcc------cccE-EEEecCCeEEEEEccC-----CHHHHHHHHHHHh
Q 033251 75 EWAVE------AMPT-FVLTKEGKVLERIVGA-----KKDELQLAVEKHA 112 (123)
Q Consensus 75 ~~~i~------~~Pt-~~~~~~g~~~~~~~g~-----~~~~l~~~l~~~~ 112 (123)
.|++. ..|+ +++.++|++...+.+. +.+++.+.|+++.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 66765 4666 5555799999988554 3567777777664
No 135
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=99.12 E-value=1.7e-09 Score=71.55 Aligned_cols=88 Identities=19% Similarity=0.205 Sum_probs=67.2
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEecccc---------hhHHHhcCcccccEEEEe-c-CCeEE
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDEL---------KSVAEEWAVEAMPTFVLT-K-EGKVL 93 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~---------~~~~~~~~i~~~Pt~~~~-~-~g~~~ 93 (123)
.++..|++||.+.|++|+++.|.++.+++.|+ .+.-+++|.... ...+.++++..+|++++. . .++..
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence 46699999999999999999999999999984 244445544222 235678999999987666 3 45777
Q ss_pred EEEccC-CHHHHHHHHHHHhc
Q 033251 94 ERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 94 ~~~~g~-~~~~l~~~l~~~~~ 113 (123)
....|. +.++|.+.|.....
T Consensus 222 pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 222 PLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEeeccCCHHHHHHHHHHHHh
Confidence 777788 88888887776643
No 136
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.11 E-value=7.2e-10 Score=57.70 Aligned_cols=60 Identities=40% Similarity=0.698 Sum_probs=51.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHH---hcCcccccEEEEecCC
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAE---EWAVEAMPTFVLTKEG 90 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~---~~~i~~~Pt~~~~~~g 90 (123)
++.||.+||++|..+.+.+.++....+++.+..++++....... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 47899999999999999999994444579999999998876554 7899999999999776
No 137
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.06 E-value=3.5e-09 Score=59.34 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=57.5
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccch----hHHHhcC--cccccEEEEecCCeEEEEEccCCHHH
Q 033251 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELK----SVAEEWA--VEAMPTFVLTKEGKVLERIVGAKKDE 103 (123)
Q Consensus 30 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~----~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~~~~~ 103 (123)
-|..|+.+||++|.+++..++++...+.++.+..+|++..+ ++....+ ...+|++++ +|+.+. ..++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig-----g~~~ 74 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG-----GCTD 74 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc-----CHHH
Confidence 36789999999999999999999988778999999998643 4544444 478999875 666543 2356
Q ss_pred HHHHHHHHh
Q 033251 104 LQLAVEKHA 112 (123)
Q Consensus 104 l~~~l~~~~ 112 (123)
|.+++++.+
T Consensus 75 ~~~~~~~~~ 83 (85)
T PRK11200 75 FEAYVKENL 83 (85)
T ss_pred HHHHHHHhc
Confidence 777666654
No 138
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.06 E-value=3.4e-09 Score=67.75 Aligned_cols=86 Identities=21% Similarity=0.205 Sum_probs=64.0
Q ss_pred hcCCEEEEEEE-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc-------------------------chhHHHhc
Q 033251 25 AAKKLIVVDFT-ASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE-------------------------LKSVAEEW 76 (123)
Q Consensus 25 ~~~k~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~-------------------------~~~~~~~~ 76 (123)
..||++||+|| +.||+.|....+.+.++.+.+. ++.++.|+.+. ...+++.|
T Consensus 29 ~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 29 VKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred HCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 36899999999 9999999999999999988874 57777776543 23566778
Q ss_pred Ccc------cccE-EEEecCCeEEEEEccC-----CHHHHHHHHHH
Q 033251 77 AVE------AMPT-FVLTKEGKVLERIVGA-----KKDELQLAVEK 110 (123)
Q Consensus 77 ~i~------~~Pt-~~~~~~g~~~~~~~g~-----~~~~l~~~l~~ 110 (123)
++. ..|+ +++.++|++...+.+. +.+++.+.|+.
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 875 3585 6666899999876443 35666666643
No 139
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.05 E-value=1.4e-09 Score=67.48 Aligned_cols=95 Identities=25% Similarity=0.331 Sum_probs=58.5
Q ss_pred HHHHHhhhhcCCEEEEEEEcCCChhhhhhhHH-H--HHHHhhCC-CeEEEEEecccchhHHHhc--------CcccccEE
Q 033251 17 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPI-L--SELAKKLP-AVIFLKVDVDELKSVAEEW--------AVEAMPTF 84 (123)
Q Consensus 17 ~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~-~--~~~~~~~~-~v~~~~i~~~~~~~~~~~~--------~i~~~Pt~ 84 (123)
++.+..|.+++|+++|.++.+||.+|+.+... + .++++... ++.-+.+|.++.+++...| +..+.|+.
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~ 106 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLT 106 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEE
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCce
Confidence 46677777899999999999999999988753 3 33443332 5788889999999987777 78899975
Q ss_pred EE-ecCCeEEEEEccCCH------HHHHHHHHHH
Q 033251 85 VL-TKEGKVLERIVGAKK------DELQLAVEKH 111 (123)
Q Consensus 85 ~~-~~~g~~~~~~~g~~~------~~l~~~l~~~ 111 (123)
++ ..+|+++.......+ ..+.+.|.+.
T Consensus 107 vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i 140 (163)
T PF03190_consen 107 VFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERI 140 (163)
T ss_dssp EEE-TTS-EEEEESS--SS-BTTB--HHHHHHHH
T ss_pred EEECCCCCeeeeeeecCCCCCCCCccHHHHHHHH
Confidence 44 479999987555533 2555555544
No 140
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.03 E-value=1.1e-09 Score=67.18 Aligned_cols=71 Identities=28% Similarity=0.662 Sum_probs=56.0
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC----CeEEEEEecccc-------------------------hhHHHh
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP----AVIFLKVDVDEL-------------------------KSVAEE 75 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~----~v~~~~i~~~~~-------------------------~~~~~~ 75 (123)
..||++.++|.+.||++|+.|=|.+.++.++.. .+.++.|+.|.. .++...
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 478999999999999999999999877766654 366666665432 367788
Q ss_pred cCcccccEEEEe-cCCeEEEE
Q 033251 76 WAVEAMPTFVLT-KEGKVLER 95 (123)
Q Consensus 76 ~~i~~~Pt~~~~-~~g~~~~~ 95 (123)
|++.++|++++. .+|..+..
T Consensus 111 y~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred cccCcCceeEEecCCCCEehH
Confidence 999999997777 57877765
No 141
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.03 E-value=3.7e-09 Score=64.78 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=33.8
Q ss_pred cCCEEEEE-EEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc
Q 033251 26 AKKLIVVD-FTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE 68 (123)
Q Consensus 26 ~~k~~vv~-f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~ 68 (123)
.+++++|. |++.||+.|+...+.+.++.+.+. ++.++.|+.+.
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 34555444 569999999999999999999884 68888887754
No 142
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.02 E-value=5.4e-09 Score=64.19 Aligned_cols=75 Identities=21% Similarity=0.317 Sum_probs=57.9
Q ss_pred cC-CEEEEEEE-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc---------------------c--hhHHHhcCc
Q 033251 26 AK-KLIVVDFT-ASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE---------------------L--KSVAEEWAV 78 (123)
Q Consensus 26 ~~-k~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~---------------------~--~~~~~~~~i 78 (123)
++ ++++|.|| ++||+.|....+.++++.+.+. ++.++.|+.+. . ..+.+.|++
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~ 105 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGV 105 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCC
Confidence 45 88888888 8999999999999999998886 58888776642 2 456677887
Q ss_pred cc----cc--E-EEEecCCeEEEEEccCC
Q 033251 79 EA----MP--T-FVLTKEGKVLERIVGAK 100 (123)
Q Consensus 79 ~~----~P--t-~~~~~~g~~~~~~~g~~ 100 (123)
.. +| + +++.++|+++..+.|.+
T Consensus 106 ~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 106 FDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred ccccCCCccceEEEECCCCEEEEEEecCC
Confidence 63 33 4 55557999999988874
No 143
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.00 E-value=5.9e-09 Score=66.39 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=36.6
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecc
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVD 67 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~ 67 (123)
.+||++||.||++||+.|.+ .+.++++.+.|. ++.++.+.++
T Consensus 23 ~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 23 YAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred hCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 47899999999999999975 789999999986 5888888774
No 144
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.00 E-value=7.9e-09 Score=63.96 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=58.7
Q ss_pred hcCCEEEEEEEcC-CChhhhhhhHHHHHHHhhCC--CeEEEEEeccc---------------------chhHHHhcCccc
Q 033251 25 AAKKLIVVDFTAS-WCPPCKLMSPILSELAKKLP--AVIFLKVDVDE---------------------LKSVAEEWAVEA 80 (123)
Q Consensus 25 ~~~k~~vv~f~~~-~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~---------------------~~~~~~~~~i~~ 80 (123)
.++|++||.||.. ||+.|....+.+.++.+.+. ++.++.|+.+. ...+.+.|++..
T Consensus 28 ~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 28 FQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred hCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 3688999999975 78999999999988888874 58888887753 234567777754
Q ss_pred c------------cE-EEEecCCeEEEEEccCC
Q 033251 81 M------------PT-FVLTKEGKVLERIVGAK 100 (123)
Q Consensus 81 ~------------Pt-~~~~~~g~~~~~~~g~~ 100 (123)
. |+ +++.++|+++..+.|..
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~ 140 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKFK 140 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcCCC
Confidence 3 54 55557999999999984
No 145
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.99 E-value=8.4e-09 Score=68.78 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=61.2
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEec--------------------------------------
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV-------------------------------------- 66 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~-------------------------------------- 66 (123)
.+.+.+|+.|..+.||+|+++.+.+.++.+. .++++..+..
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 4677889999999999999999999887765 3466655543
Q ss_pred ------------ccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHHHHHHHHH
Q 033251 67 ------------DELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVE 109 (123)
Q Consensus 67 ------------~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~ 109 (123)
+++..+.+++|++++|++++-.+...+....|+ +.++|.+.|.
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 001235667899999999987632344556788 6888887764
No 146
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.98 E-value=5.7e-09 Score=63.39 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=59.3
Q ss_pred cCCEEEEEEE-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc----------------------chhHHHhcCccc
Q 033251 26 AKKLIVVDFT-ASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE----------------------LKSVAEEWAVEA 80 (123)
Q Consensus 26 ~~k~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~----------------------~~~~~~~~~i~~ 80 (123)
.+++++|+|| +.||+.|....+.+.++.+.+. ++.++.|..+. ...+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 6899999999 7899999999999999988863 68888887643 234566777776
Q ss_pred cc---------E-EEEecCCeEEEEEccCC
Q 033251 81 MP---------T-FVLTKEGKVLERIVGAK 100 (123)
Q Consensus 81 ~P---------t-~~~~~~g~~~~~~~g~~ 100 (123)
.| + +++.++|+++..+.|..
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 66 4 55557899999988874
No 147
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.98 E-value=9.3e-09 Score=63.16 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=34.5
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEe
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVD 65 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~ 65 (123)
.+.++.|+.|+.++||+|+.+.+.+.++...++++.+...+
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 43 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKE 43 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEe
Confidence 46789999999999999999999999998888765555444
No 148
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9e-10 Score=70.88 Aligned_cols=103 Identities=32% Similarity=0.417 Sum_probs=88.5
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEE
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~ 86 (123)
++.+....+| +. .+++..+++||++||..|.++...+..+++..+++.+++++.+..++++..+.+..+|.+++
T Consensus 3 v~~i~~~~~f---~~---~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~ 76 (227)
T KOG0911|consen 3 VQFIVFQEQF---LD---QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVF 76 (227)
T ss_pred ceeehhHHHH---HH---hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeee
Confidence 4556556666 32 38999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEEccCCHHHHHHHHHHHhccc
Q 033251 87 TKEGKVLERIVGAKKDELQLAVEKHATTV 115 (123)
Q Consensus 87 ~~~g~~~~~~~g~~~~~l~~~l~~~~~~~ 115 (123)
+..|+.+.+..|.++..+...++.+....
T Consensus 77 ~~~~~~v~~l~~~~~~~~~~~~~~~~~~~ 105 (227)
T KOG0911|consen 77 FFLGEKVDRLSGADPPFLVSKVEKLAESG 105 (227)
T ss_pred eecchhhhhhhccCcHHHHHHHHHhhhhc
Confidence 99999999999997666666666665544
No 149
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.96 E-value=6.4e-09 Score=63.35 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=36.8
Q ss_pred cCCEEEEEEEcCCChh-hhhhhHHHHHHHhhCC-----CeEEEEEecc
Q 033251 26 AKKLIVVDFTASWCPP-CKLMSPILSELAKKLP-----AVIFLKVDVD 67 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~-C~~~~~~~~~~~~~~~-----~v~~~~i~~~ 67 (123)
+++++||.||++||+. |....+.++++.+.+. ++.++.|+.+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6899999999999997 9999999999998885 2888888764
No 150
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.96 E-value=1.1e-08 Score=55.20 Aligned_cols=68 Identities=32% Similarity=0.517 Sum_probs=49.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhc----CcccccEEEEecCCeEEEEEccCCHHHHHH
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEW----AVEAMPTFVLTKEGKVLERIVGAKKDELQL 106 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~----~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 106 (123)
+..|+.+||++|..+...+.+ .++.+..++++........+ +...+|++++ +| ....|.+..+|++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHHh
Confidence 567899999999998888766 26777778887665544443 6789999976 44 3556778777776
Q ss_pred HH
Q 033251 107 AV 108 (123)
Q Consensus 107 ~l 108 (123)
+|
T Consensus 72 ~~ 73 (73)
T cd02976 72 LL 73 (73)
T ss_pred hC
Confidence 53
No 151
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.94 E-value=2.6e-08 Score=63.70 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=66.5
Q ss_pred cCCEEEEEEE-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc-------------------------chhHHHhcC
Q 033251 26 AKKLIVVDFT-ASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE-------------------------LKSVAEEWA 77 (123)
Q Consensus 26 ~~k~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~-------------------------~~~~~~~~~ 77 (123)
.+|++||+|| +.||+.|....+.+.++.+++. ++.++.|+.|. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 6889999999 9999999999999999999985 57777777643 235678888
Q ss_pred c----ccc--cE-EEEecCCeEEEEEccC-----CHHHHHHHHHHHh
Q 033251 78 V----EAM--PT-FVLTKEGKVLERIVGA-----KKDELQLAVEKHA 112 (123)
Q Consensus 78 i----~~~--Pt-~~~~~~g~~~~~~~g~-----~~~~l~~~l~~~~ 112 (123)
+ .++ |+ +++.++|++...+... +.+++.+.|+.+-
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 7 355 75 6666799988876432 4678877776553
No 152
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.93 E-value=9.7e-09 Score=66.13 Aligned_cols=77 Identities=25% Similarity=0.379 Sum_probs=55.8
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEec--------------------------------------
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV-------------------------------------- 66 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~-------------------------------------- 66 (123)
.+++..++.|+.+.||+|+++.+.+.+ ...++.+..+..
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 356899999999999999999999887 223444444432
Q ss_pred -------ccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHHHHHHHH
Q 033251 67 -------DELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAV 108 (123)
Q Consensus 67 -------~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l 108 (123)
+++..+++++|+.++|+++ +.+|+. ..|. +.++|.++|
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 1123567889999999997 777766 4577 677777653
No 153
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.93 E-value=5.6e-09 Score=58.08 Aligned_cols=60 Identities=32% Similarity=0.513 Sum_probs=44.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccch-----hHHHhcCcccccEEEEecCCeEE
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELK-----SVAEEWAVEAMPTFVLTKEGKVL 93 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~-----~~~~~~~i~~~Pt~~~~~~g~~~ 93 (123)
|+.|+++|||+|..+.+.++++.-. +.+.++.++.+.+. .+.+.+++.++|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 4689999999999999999998722 23777777776543 2556678999999855 66543
No 154
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.91 E-value=3e-08 Score=64.15 Aligned_cols=89 Identities=19% Similarity=0.247 Sum_probs=64.4
Q ss_pred hcCCEEEE-EEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc---------------------------chhHHH
Q 033251 25 AAKKLIVV-DFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE---------------------------LKSVAE 74 (123)
Q Consensus 25 ~~~k~~vv-~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~---------------------------~~~~~~ 74 (123)
.+++.+|| .||++||+.|....+.+.++.+++. ++.++.|+++. ...+++
T Consensus 25 ~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 25 YKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred hCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 36777666 5789999999999999999888875 57777776642 235566
Q ss_pred hcCcc------cccE-EEEecCCeEEEEE----c-cCCHHHHHHHHHHHhc
Q 033251 75 EWAVE------AMPT-FVLTKEGKVLERI----V-GAKKDELQLAVEKHAT 113 (123)
Q Consensus 75 ~~~i~------~~Pt-~~~~~~g~~~~~~----~-g~~~~~l~~~l~~~~~ 113 (123)
.||+. .+|+ +++.++|++.... . |.+.+++.+.|+.+..
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 77773 4786 5555789888765 2 3367888888887654
No 155
>PRK15000 peroxidase; Provisional
Probab=98.91 E-value=3.1e-08 Score=64.04 Aligned_cols=87 Identities=18% Similarity=0.277 Sum_probs=66.6
Q ss_pred cCCEEEEEEEc-CCChhhhhhhHHHHHHHhhCC--CeEEEEEecccc----------------------------hhHHH
Q 033251 26 AKKLIVVDFTA-SWCPPCKLMSPILSELAKKLP--AVIFLKVDVDEL----------------------------KSVAE 74 (123)
Q Consensus 26 ~~k~~vv~f~~-~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~----------------------------~~~~~ 74 (123)
++|++||+||. .||+.|....+.+.++.+++. ++.++.|++|.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 68999999998 599999999999999999886 577887777531 24556
Q ss_pred hcCcc------cccE-EEEecCCeEEEEEccC-----CHHHHHHHHHHHh
Q 033251 75 EWAVE------AMPT-FVLTKEGKVLERIVGA-----KKDELQLAVEKHA 112 (123)
Q Consensus 75 ~~~i~------~~Pt-~~~~~~g~~~~~~~g~-----~~~~l~~~l~~~~ 112 (123)
.|++. .+|+ +++.++|++...+.+. +.+++.+.|+.+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 67776 5886 5555799999887764 3577777776543
No 156
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.91 E-value=2.8e-08 Score=55.84 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=54.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc----hhHHHhcCc--ccccEEEEecCCeEEEEEccCCHHHH
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL----KSVAEEWAV--EAMPTFVLTKEGKVLERIVGAKKDEL 104 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~----~~~~~~~~i--~~~Pt~~~~~~g~~~~~~~g~~~~~l 104 (123)
|+.|..+|||+|.+++..++++...++++.+..+|++.. .++...++- .++|++++ +|+.+. | .++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~ig---G--~~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVG---G--CTDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEec---C--HHHH
Confidence 678899999999999999999987777888888888743 245556663 78999965 554432 2 3566
Q ss_pred HHHHHHHh
Q 033251 105 QLAVEKHA 112 (123)
Q Consensus 105 ~~~l~~~~ 112 (123)
.+++++..
T Consensus 75 ~~~~~~~~ 82 (86)
T TIGR02183 75 EQLVKENF 82 (86)
T ss_pred HHHHHhcc
Confidence 66666544
No 157
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.90 E-value=5.9e-10 Score=72.09 Aligned_cols=98 Identities=30% Similarity=0.530 Sum_probs=80.5
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccchhHHHhcCcccccE
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
++..+ +.+++...+ ..-.++.|+++|||.|....+.|+.++.--. ++.+..+|+..++-+..+|-++..||
T Consensus 25 ~~~~~-~eenw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLpt 97 (248)
T KOG0913|consen 25 KLTRI-DEENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPT 97 (248)
T ss_pred eeEEe-cccchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecce
Confidence 44445 456777666 2356789999999999999999999988766 49999999999999999999999999
Q ss_pred EEEecCCeEEEEEccC-CHHHHHHHHHHH
Q 033251 84 FVLTKEGKVLERIVGA-KKDELQLAVEKH 111 (123)
Q Consensus 84 ~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 111 (123)
|.-.++|. ..++.|. +...+..+++..
T Consensus 98 IYHvkDGe-FrrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 98 IYHVKDGE-FRRYSGARDKNDFISFEEHR 125 (248)
T ss_pred EEEeeccc-cccccCcccchhHHHHHHhh
Confidence 99998884 5667788 788888887743
No 158
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.89 E-value=3.9e-08 Score=72.34 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=66.8
Q ss_pred CCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHHHHH
Q 033251 27 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQ 105 (123)
Q Consensus 27 ~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~ 105 (123)
+..-+-.|.+++|++|-+....+++++...|++..-.+|....++++++|+|.++|++++ ||+.+ +.|. +.+++.
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~~~ 551 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEEML 551 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHHHH
Confidence 334455668999999999999999999999999999999999999999999999999999 56555 3465 788888
Q ss_pred HHH
Q 033251 106 LAV 108 (123)
Q Consensus 106 ~~l 108 (123)
.+|
T Consensus 552 ~~~ 554 (555)
T TIGR03143 552 ELI 554 (555)
T ss_pred Hhh
Confidence 775
No 159
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.82 E-value=1.3e-07 Score=52.52 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=56.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHH---HhcCcccccEEEEecCCeEEEEEccCCHHHHHHH
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVA---EEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLA 107 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~---~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 107 (123)
+..|..+||++|.+.+..+.+ .++.|-.+|+++.++.. ...|...+|++++ ++ ..+.|.++++|.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~---~~~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD---LSWSGFRPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---EEEecCCHHHHHHH
Confidence 567889999999999988854 47889999998876543 3346778999876 33 34568899999998
Q ss_pred HHHHhc
Q 033251 108 VEKHAT 113 (123)
Q Consensus 108 l~~~~~ 113 (123)
+.....
T Consensus 73 ~~~~~~ 78 (81)
T PRK10329 73 HPAPHA 78 (81)
T ss_pred HHhhhh
Confidence 876654
No 160
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.80 E-value=5.8e-08 Score=52.66 Aligned_cols=67 Identities=21% Similarity=0.409 Sum_probs=50.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhc---CcccccEEEEecCCeEEEEEccCCHHHHHHH
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEW---AVEAMPTFVLTKEGKVLERIVGAKKDELQLA 107 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~---~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 107 (123)
..|..++||+|...+..+++ .++.+..+|++++++....+ |..++|++++. |+ ..+.|.++++|.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~--g~--~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVAD--GD--LSWSGFRPDKLKAL 71 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCcccCEEEEC--CC--cEEeccCHHHHHhc
Confidence 46788999999999999975 37888889998877665544 77889998663 32 25667788887653
No 161
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.76 E-value=1e-07 Score=60.09 Aligned_cols=39 Identities=44% Similarity=0.671 Sum_probs=33.2
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEE
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKV 64 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i 64 (123)
.+++.|+.|+...||+|..+.+.+.++..++++ +.+..+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 678999999999999999999999999998873 555433
No 162
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.76 E-value=2.1e-07 Score=67.99 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=69.3
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHHHH
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDEL 104 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l 104 (123)
....-+..|++++||+|-.....+++++...+++..-.||....+++..+|++.++|++++ +|+.+ +.|. +.+++
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~ 190 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEI 190 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHH
Confidence 3455688899999999999999999999999999999999999999999999999999977 55433 4466 67777
Q ss_pred HHHHHHH
Q 033251 105 QLAVEKH 111 (123)
Q Consensus 105 ~~~l~~~ 111 (123)
.+.+.+.
T Consensus 191 ~~~~~~~ 197 (517)
T PRK15317 191 LAKLDTG 197 (517)
T ss_pred HHHHhcc
Confidence 7777654
No 163
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.75 E-value=2.4e-07 Score=57.45 Aligned_cols=81 Identities=30% Similarity=0.491 Sum_probs=61.4
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhC--C-CeEEEEEeccc---------------------------------
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKL--P-AVIFLKVDVDE--------------------------------- 68 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~--~-~v~~~~i~~~~--------------------------------- 68 (123)
...+++|+.|+...||+|.++.+.+.++.+++ + .+.+...+...
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 56789999999999999999999999999887 4 47777775510
Q ss_pred -----------------------------------chhHHHhcCcccccEEEEecCCeEEEEEccC-CHHHHHHHHHH
Q 033251 69 -----------------------------------LKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEK 110 (123)
Q Consensus 69 -----------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 110 (123)
......+++|.++||+++ ||+.+ .|. +.+++...|++
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 012345678999999999 88774 444 89999999875
No 164
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.72 E-value=3.3e-07 Score=61.34 Aligned_cols=87 Identities=20% Similarity=0.166 Sum_probs=64.6
Q ss_pred cCCEEEEEEE-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc----------------------------chhHHH
Q 033251 26 AKKLIVVDFT-ASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE----------------------------LKSVAE 74 (123)
Q Consensus 26 ~~k~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~----------------------------~~~~~~ 74 (123)
+++++|++|| +.||+.|....+.+.++.+++. ++.++.|.+|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 6778888888 8999999999999999988885 57777776653 234667
Q ss_pred hcCcc-----cccE-EEEecCCeEEEEEcc-----CCHHHHHHHHHHHh
Q 033251 75 EWAVE-----AMPT-FVLTKEGKVLERIVG-----AKKDELQLAVEKHA 112 (123)
Q Consensus 75 ~~~i~-----~~Pt-~~~~~~g~~~~~~~g-----~~~~~l~~~l~~~~ 112 (123)
+||+. ..|+ +++.++|++...+.. .+.+++.+.|+.+-
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 78874 4786 555579999887632 24677777776553
No 165
>PRK13189 peroxiredoxin; Provisional
Probab=98.72 E-value=3.2e-07 Score=60.25 Aligned_cols=87 Identities=15% Similarity=0.278 Sum_probs=62.9
Q ss_pred cCCEEE-EEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc---------------------------chhHHHh
Q 033251 26 AKKLIV-VDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE---------------------------LKSVAEE 75 (123)
Q Consensus 26 ~~k~~v-v~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~---------------------------~~~~~~~ 75 (123)
.++.++ +.|+++||+.|....+.+.++.+.+. ++.++.|++|. ...++++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 577555 46679999999999999999988885 67777776653 2345667
Q ss_pred cCcc-------cccE-EEEecCCeEEEEEc-----cCCHHHHHHHHHHHh
Q 033251 76 WAVE-------AMPT-FVLTKEGKVLERIV-----GAKKDELQLAVEKHA 112 (123)
Q Consensus 76 ~~i~-------~~Pt-~~~~~~g~~~~~~~-----g~~~~~l~~~l~~~~ 112 (123)
||+. .+|+ +++.++|++...+. |.+.+++.+.|+.+.
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 7764 3575 56667998887664 335678888887654
No 166
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.71 E-value=1.5e-06 Score=55.01 Aligned_cols=99 Identities=18% Similarity=0.332 Sum_probs=77.8
Q ss_pred EEEEeehhhHHHHHHhhhhcCCE-EEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcc--ccc
Q 033251 7 VISCHTVESWNEQLQKGIAAKKL-IVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVE--AMP 82 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~-~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~--~~P 82 (123)
+.++ +.+++.... ..+++ +++.|..........+...+++++..+.+ +.|+.+|++..+.+.+.+++. .+|
T Consensus 79 v~~~-t~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P 153 (184)
T PF13848_consen 79 VPEL-TPENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLP 153 (184)
T ss_dssp CEEE-STTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSS
T ss_pred cccc-chhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCC
Confidence 4455 456777777 56655 77777777788889999999999999986 999999999888999999998 899
Q ss_pred EEEEec--CCeEEEEEccC-CHHHHHHHHHH
Q 033251 83 TFVLTK--EGKVLERIVGA-KKDELQLAVEK 110 (123)
Q Consensus 83 t~~~~~--~g~~~~~~~g~-~~~~l~~~l~~ 110 (123)
+++++. +++......+. +.+.|.+||+.
T Consensus 154 ~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 154 ALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 988885 45543334666 78999999863
No 167
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.71 E-value=2e-07 Score=48.72 Aligned_cols=55 Identities=35% Similarity=0.558 Sum_probs=42.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHH----HhcCcccccEEEEecCCeE
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVA----EEWAVEAMPTFVLTKEGKV 92 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~----~~~~i~~~Pt~~~~~~g~~ 92 (123)
|+.|..+|||+|..++..+++ .++.+..+|++..++.. +..+..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-----~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-----KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-----TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-----cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 567999999999999998843 25888888888775443 3348999999887 6654
No 168
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.70 E-value=3.6e-07 Score=59.19 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=62.8
Q ss_pred CEE-EEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc---------------------------chhHHHhcC
Q 033251 28 KLI-VVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE---------------------------LKSVAEEWA 77 (123)
Q Consensus 28 k~~-vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~---------------------------~~~~~~~~~ 77 (123)
+++ |+.|+++||+.|....+.+.++.+.+. ++.++.|+++. ...+++.||
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 554 557889999999999999999998885 57888777653 235667788
Q ss_pred cc----ccc-----EEEEecCCeEEEEEccC-----CHHHHHHHHHHHh
Q 033251 78 VE----AMP-----TFVLTKEGKVLERIVGA-----KKDELQLAVEKHA 112 (123)
Q Consensus 78 i~----~~P-----t~~~~~~g~~~~~~~g~-----~~~~l~~~l~~~~ 112 (123)
+. +.| ++++.++|++...+.+. +.+++.+.|+.+-
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 65 234 46666899998877653 4678888887654
No 169
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.70 E-value=3.6e-07 Score=59.68 Aligned_cols=86 Identities=16% Similarity=0.277 Sum_probs=63.6
Q ss_pred cCCEE-EEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccc---------------------------hhHHHh
Q 033251 26 AKKLI-VVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDEL---------------------------KSVAEE 75 (123)
Q Consensus 26 ~~k~~-vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~---------------------------~~~~~~ 75 (123)
.++++ |+.|+++|||.|....+.+.++.+++. ++.++.|++|.. ..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 57765 568889999999999999999999985 688888877542 245667
Q ss_pred cCcc-------cccE-EEEecCCeEEEEEccC-----CHHHHHHHHHHH
Q 033251 76 WAVE-------AMPT-FVLTKEGKVLERIVGA-----KKDELQLAVEKH 111 (123)
Q Consensus 76 ~~i~-------~~Pt-~~~~~~g~~~~~~~g~-----~~~~l~~~l~~~ 111 (123)
||+. .+|+ +++.++|++...+... +.+++.+.|+.+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 7763 5786 5555789888876422 467888888765
No 170
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.69 E-value=3.4e-07 Score=59.81 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=63.5
Q ss_pred cCCEEEE-EEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccc---------------------------hhHHHh
Q 033251 26 AKKLIVV-DFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDEL---------------------------KSVAEE 75 (123)
Q Consensus 26 ~~k~~vv-~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~---------------------------~~~~~~ 75 (123)
++|++|| .|+++||+.|....+.+.++.+++. |+.++.+++|.. ..++++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 5776665 7779999999999999999999985 688888877532 245566
Q ss_pred cCcc-------cccE-EEEecCCeEEEEEccC-----CHHHHHHHHHHH
Q 033251 76 WAVE-------AMPT-FVLTKEGKVLERIVGA-----KKDELQLAVEKH 111 (123)
Q Consensus 76 ~~i~-------~~Pt-~~~~~~g~~~~~~~g~-----~~~~l~~~l~~~ 111 (123)
||+. ..|+ +++.++|++...+.+. +.+++.+.|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7753 3575 6666799988876443 467888887765
No 171
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.68 E-value=1.1e-07 Score=60.44 Aligned_cols=104 Identities=19% Similarity=0.383 Sum_probs=84.4
Q ss_pred CCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccE
Q 033251 4 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 4 ~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
=|.+.+| |..+|.+.+..| +++-.|||..|...-|.|.-+...++.++..||.++|+.+-.... +..|.-...||
T Consensus 90 fG~V~~I-Sg~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nlPT 164 (240)
T KOG3170|consen 90 FGEVFPI-SGPDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNLPT 164 (240)
T ss_pred ccceeec-cchHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCcccCCCe
Confidence 3677888 578888888876 788899999999999999999999999999999999998876553 45688889999
Q ss_pred EEEecCCeEEEEEcc------C--CHHHHHHHHHHHh
Q 033251 84 FVLTKEGKVLERIVG------A--KKDELQLAVEKHA 112 (123)
Q Consensus 84 ~~~~~~g~~~~~~~g------~--~~~~l~~~l~~~~ 112 (123)
+++|..|.+...+.| . +.+++..++-+.-
T Consensus 165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 999988866665543 3 3677777776653
No 172
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.67 E-value=1.5e-07 Score=52.32 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=59.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCC--eEEEEEccC-CHHHHHHH
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEG--KVLERIVGA-KKDELQLA 107 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g--~~~~~~~g~-~~~~l~~~ 107 (123)
|++|..+.|+-|..+...+.++.... ++.+..+|+++++++..+|+. .+|++.+...+ .......+. +.++|+++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~ 79 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW 79 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence 67889999999999999999977665 499999999999999999996 89998886511 112222344 89999988
Q ss_pred HH
Q 033251 108 VE 109 (123)
Q Consensus 108 l~ 109 (123)
|+
T Consensus 80 L~ 81 (81)
T PF05768_consen 80 LE 81 (81)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 173
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.65 E-value=6.3e-07 Score=52.08 Aligned_cols=92 Identities=23% Similarity=0.273 Sum_probs=71.7
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcC--CChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCccccc
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTAS--WCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMP 82 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~--~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~P 82 (123)
....++ .++++..+ ..+...+++|.++ -++.+....-++.++.+.+++ +....+.......+..+|++...|
T Consensus 10 g~~~vd-~~~ld~~l----~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~P 84 (107)
T PF07449_consen 10 GWPRVD-ADTLDAFL----AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWP 84 (107)
T ss_dssp TEEEE--CCCHHHHH----HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSS
T ss_pred CCeeec-hhhHHHHH----hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCC
Confidence 345554 57888887 4566666666543 457778888899999999997 677777878889999999999999
Q ss_pred EEEEecCCeEEEEEccC-CHH
Q 033251 83 TFVLTKEGKVLERIVGA-KKD 102 (123)
Q Consensus 83 t~~~~~~g~~~~~~~g~-~~~ 102 (123)
+++++++|+.+....|. +-+
T Consensus 85 aLvf~R~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 85 ALVFFRDGRYLGAIEGIRDWA 105 (107)
T ss_dssp EEEEEETTEEEEEEESSSTHH
T ss_pred eEEEEECCEEEEEecCeeccc
Confidence 99999999999999988 543
No 174
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.65 E-value=3.7e-07 Score=59.27 Aligned_cols=40 Identities=28% Similarity=0.547 Sum_probs=32.3
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHH---HHHHhhCC-CeEEEEEe
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPIL---SELAKKLP-AVIFLKVD 65 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~---~~~~~~~~-~v~~~~i~ 65 (123)
.+++.|+.|++..||+|..+.+.+ +.+.+.++ ++.+..+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 467889999999999999999876 88888887 45555443
No 175
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.64 E-value=8.3e-07 Score=64.85 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=68.9
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHHHH
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDEL 104 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l 104 (123)
....-+..|.++.||+|-.....+++++...|+|..-.+|....+++..+|++.++|++++ +|+.+ +.|. +.+++
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~ 191 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAEL 191 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHH
Confidence 3455688899999999999999999999999999999999999999999999999999987 55433 4466 67777
Q ss_pred HHHHHHH
Q 033251 105 QLAVEKH 111 (123)
Q Consensus 105 ~~~l~~~ 111 (123)
.+.+.+.
T Consensus 192 ~~~l~~~ 198 (515)
T TIGR03140 192 LEKLEET 198 (515)
T ss_pred HHHHhhc
Confidence 6666654
No 176
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.61 E-value=1e-06 Score=56.88 Aligned_cols=87 Identities=21% Similarity=0.259 Sum_probs=62.7
Q ss_pred hcCCEEEEEEE-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccc----------------------------hhHH
Q 033251 25 AAKKLIVVDFT-ASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDEL----------------------------KSVA 73 (123)
Q Consensus 25 ~~~k~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~----------------------------~~~~ 73 (123)
..+++++|+|| +.||+.|....+.+.++.+++. ++.++.|+.+.. .+++
T Consensus 34 ~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia 113 (199)
T PTZ00253 34 YKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA 113 (199)
T ss_pred HCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence 36889999999 4889999998899999988886 688888877532 2456
Q ss_pred HhcCcc------cccE-EEEecCCeEEEEEccC-----CHHHHHHHHHHH
Q 033251 74 EEWAVE------AMPT-FVLTKEGKVLERIVGA-----KKDELQLAVEKH 111 (123)
Q Consensus 74 ~~~~i~------~~Pt-~~~~~~g~~~~~~~g~-----~~~~l~~~l~~~ 111 (123)
+.||+. ..|+ +++.++|++...+.+. +.+++.+.|+..
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 777874 2565 5666799988876653 345555555543
No 177
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.60 E-value=3.5e-07 Score=50.49 Aligned_cols=60 Identities=25% Similarity=0.369 Sum_probs=44.5
Q ss_pred CCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc---hhHHHhcCcccccEEEEecCCeEE
Q 033251 27 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL---KSVAEEWAVEAMPTFVLTKEGKVL 93 (123)
Q Consensus 27 ~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~---~~~~~~~~i~~~Pt~~~~~~g~~~ 93 (123)
++.-|+.|..+||++|.+.+..+++. ++.+..+|+++. .++....+...+|++++ +|+.+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 44456689999999999999999743 677777887755 34455568899999865 66553
No 178
>PHA03050 glutaredoxin; Provisional
Probab=98.59 E-value=5.6e-07 Score=52.64 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=43.7
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc-cc----hhHHHhcCcccccEEEEecCCeEEE
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-EL----KSVAEEWAVEAMPTFVLTKEGKVLE 94 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~-~~----~~~~~~~~i~~~Pt~~~~~~g~~~~ 94 (123)
.+++ |+.|..+|||+|.+.+..+.+..-..+.+..+.++-. .. ..+.+..|...+|++++ +|+.+.
T Consensus 11 ~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iG 81 (108)
T PHA03050 11 ANNK--VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIG 81 (108)
T ss_pred ccCC--EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEe
Confidence 4444 5679999999999999999887654444444444421 12 23455567889999966 666554
No 179
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.55 E-value=2.1e-07 Score=53.64 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=38.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchh---H----HHhcCcccccEEEEecCCeEEE
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKS---V----AEEWAVEAMPTFVLTKEGKVLE 94 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~---~----~~~~~i~~~Pt~~~~~~g~~~~ 94 (123)
|+.|..+|||+|.+++..+.+. ++.+..+|++..+. + .+..|..++|.+++ +|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEc
Confidence 4568999999999999987765 45555666665432 2 23335788999854 665543
No 180
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.52 E-value=2.1e-06 Score=63.29 Aligned_cols=102 Identities=13% Similarity=0.076 Sum_probs=83.9
Q ss_pred hhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEec-CCe
Q 033251 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTK-EGK 91 (123)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~-~g~ 91 (123)
..+++..+.. -++.+.++.|+.+.|..|..+...++++++..+.+.+..+|..++.+.+++|++...|++.+++ +|+
T Consensus 354 ~~~l~~~~~~--l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~ 431 (555)
T TIGR03143 354 RQQLVGIFGR--LENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGN 431 (555)
T ss_pred HHHHHHHHHh--cCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCc
Confidence 3456666654 4666788889999999999999999999988888999999999999999999999999999984 554
Q ss_pred E-EEEEccC-CHHHHHHHHHHHhcccc
Q 033251 92 V-LERIVGA-KKDELQLAVEKHATTVE 116 (123)
Q Consensus 92 ~-~~~~~g~-~~~~l~~~l~~~~~~~~ 116 (123)
. --+|.|. .-.++..+|..++..+.
T Consensus 432 ~~~i~f~g~P~G~Ef~s~i~~i~~~~~ 458 (555)
T TIGR03143 432 YTGLKFHGVPSGHELNSFILALYNAAG 458 (555)
T ss_pred ccceEEEecCccHhHHHHHHHHHHhcC
Confidence 3 3577788 57899999998886553
No 181
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.51 E-value=7.1e-07 Score=49.29 Aligned_cols=58 Identities=29% Similarity=0.499 Sum_probs=41.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc-h----hHHHhcCcccccEEEEecCCeEE
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL-K----SVAEEWAVEAMPTFVLTKEGKVL 93 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~-~----~~~~~~~i~~~Pt~~~~~~g~~~ 93 (123)
|+.|+++|||+|..+.+.+.++.. ...++.++.+.. . .+.+..+..++|++++ +|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 577899999999999999999866 345666666544 2 3445568889999744 56543
No 182
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.47 E-value=3.9e-06 Score=45.33 Aligned_cols=66 Identities=20% Similarity=0.381 Sum_probs=45.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchh---HHHhcCcccccEEEEecCCeEEEEEccCCHHHHHHH
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKS---VAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLA 107 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~---~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 107 (123)
++.|..+|||+|.+.+..+++. ++.+..+|++.+.. +....+...+|.+++ +|+.+. | .++|.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~ig---g--~~~l~~~ 70 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIG---G--SDDLEKY 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEe---C--HHHHHHH
Confidence 5678899999999998888753 67777777776543 233357889999854 565442 2 4455554
Q ss_pred H
Q 033251 108 V 108 (123)
Q Consensus 108 l 108 (123)
|
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 4
No 183
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.46 E-value=8.2e-07 Score=48.88 Aligned_cols=56 Identities=23% Similarity=0.444 Sum_probs=41.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHh----cCcccccEEEEecCCeEE
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEE----WAVEAMPTFVLTKEGKVL 93 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~----~~i~~~Pt~~~~~~g~~~ 93 (123)
|..|+.+|||+|...+..+++. ++.+..+|++.++...++ .+..++|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 3568899999999999999863 566777777776554433 46788999865 56544
No 184
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.45 E-value=1.8e-06 Score=46.05 Aligned_cols=58 Identities=28% Similarity=0.463 Sum_probs=42.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHH----hcCcccccEEEEecCCeEEEE
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAE----EWAVEAMPTFVLTKEGKVLER 95 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~----~~~i~~~Pt~~~~~~g~~~~~ 95 (123)
++.|+++||++|+.++..+.+.. +.+..+|++.+.+..+ ..+...+|++++ +|+.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~igg 63 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIGG 63 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEec
Confidence 56788999999999999988764 6777888877654433 346678887754 6665553
No 185
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.44 E-value=2.2e-06 Score=46.55 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=41.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHH----hcCcc-cccEEEEecCCeEE
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAE----EWAVE-AMPTFVLTKEGKVL 93 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~----~~~i~-~~Pt~~~~~~g~~~ 93 (123)
+..|..++||+|..++..+++. ++.+..+|++.+++..+ ..+.. ++|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 4678899999999999999763 67778888887654433 34665 8998865 55543
No 186
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.42 E-value=2.1e-05 Score=47.48 Aligned_cols=106 Identities=17% Similarity=0.273 Sum_probs=76.6
Q ss_pred CcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcC--CC-hhh-hhhhHHHHHHHhhCC-C-eEEEEEecccchhHHHhcCc
Q 033251 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTAS--WC-PPC-KLMSPILSELAKKLP-A-VIFLKVDVDELKSVAEEWAV 78 (123)
Q Consensus 5 ~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~--~C-~~C-~~~~~~~~~~~~~~~-~-v~~~~i~~~~~~~~~~~~~i 78 (123)
..++++++.+.+++.= .+.+.-+|.|.-. .| +.+ ......+.++++.+. . +.|+.+|.+....+.+.||+
T Consensus 2 ~~~~~l~~~~~~~~~C----~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl 77 (130)
T cd02983 2 PEIIELTSEDVFEETC----EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI 77 (130)
T ss_pred CceEEecCHHHHHhhc----cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC
Confidence 3577887766666555 2345666666532 22 333 356888999999997 4 89999999999889999998
Q ss_pred cc--ccEEEEecCCeEEEE-EccC-CHHHHHHHHHHHhcc
Q 033251 79 EA--MPTFVLTKEGKVLER-IVGA-KKDELQLAVEKHATT 114 (123)
Q Consensus 79 ~~--~Pt~~~~~~g~~~~~-~~g~-~~~~l~~~l~~~~~~ 114 (123)
.+ +|+++++...+.... +.|. +.+.+.+|++..+.-
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred CccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcC
Confidence 54 999888854332232 5566 899999999999864
No 187
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.41 E-value=3.4e-06 Score=45.72 Aligned_cols=57 Identities=16% Similarity=0.395 Sum_probs=42.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchh----HHHhcCcccccEEEEecCCeEEE
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKS----VAEEWAVEAMPTFVLTKEGKVLE 94 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~ 94 (123)
+..|..++|++|++++..+++ .++.+..+|++..++ +.+..+-..+|++++ +|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-----~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-----KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 557889999999999999886 367788888887654 445557778999866 555443
No 188
>PRK10824 glutaredoxin-4; Provisional
Probab=98.36 E-value=3.2e-06 Score=49.88 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=49.8
Q ss_pred HHhhhhcCCEEEEEEEc---CCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHh----cCcccccEEEEecCCeE
Q 033251 20 LQKGIAAKKLIVVDFTA---SWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEE----WAVEAMPTFVLTKEGKV 92 (123)
Q Consensus 20 ~~~~~~~~k~~vv~f~~---~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~----~~i~~~Pt~~~~~~g~~ 92 (123)
++....+++++|..-.+ +|||+|.+....+..+ ++.+..+|++.++++... -+-..+|.+.+ +|+.
T Consensus 8 v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~ 80 (115)
T PRK10824 8 IQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGEL 80 (115)
T ss_pred HHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEE
Confidence 33333566555432221 5999999999998876 355556677666554433 35566777766 7766
Q ss_pred EEEEccCC----HHHHHHHHHHHh
Q 033251 93 LERIVGAK----KDELQLAVEKHA 112 (123)
Q Consensus 93 ~~~~~g~~----~~~l~~~l~~~~ 112 (123)
+....... ..+|...|....
T Consensus 81 IGG~ddl~~l~~~G~L~~lL~~~~ 104 (115)
T PRK10824 81 VGGCDIVIEMYQRGELQQLIKETA 104 (115)
T ss_pred EcChHHHHHHHHCCCHHHHHHHHH
Confidence 65432221 234555554443
No 189
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.36 E-value=3.7e-06 Score=54.20 Aligned_cols=105 Identities=20% Similarity=0.353 Sum_probs=85.2
Q ss_pred CcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEE
Q 033251 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF 84 (123)
Q Consensus 5 ~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~ 84 (123)
+.+.++.+..+|-..+... .+.-.++|.+|-+.-+.|..+-..+.=|+..||-++|+.+-.+.. ....+|....+|++
T Consensus 138 ~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~-gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT-GASDRFSLNVLPTL 215 (273)
T ss_pred ceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc-cchhhhcccCCceE
Confidence 4678999999999988642 244578889999999999999999999999999999999976654 34688999999999
Q ss_pred EEecCCeEEEEEccC--------CHHHHHHHHHHH
Q 033251 85 VLTKEGKVLERIVGA--------KKDELQLAVEKH 111 (123)
Q Consensus 85 ~~~~~g~~~~~~~g~--------~~~~l~~~l~~~ 111 (123)
++|++|+.+..+... ...++..||...
T Consensus 216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999999998865533 235666666654
No 190
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.34 E-value=7e-06 Score=47.10 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=36.9
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHH----HhcCcccccEEEEecCCeEEE
Q 033251 37 SWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVA----EEWAVEAMPTFVLTKEGKVLE 94 (123)
Q Consensus 37 ~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~----~~~~i~~~Pt~~~~~~g~~~~ 94 (123)
+|||+|.+++..+.+. ++.+..+|++++++.. +..|...+|.+++ +|+.+.
T Consensus 25 ~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~iG 79 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFVG 79 (97)
T ss_pred CCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEe
Confidence 8999999999998774 5667788887666543 3345678888865 565543
No 191
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=8.5e-06 Score=55.23 Aligned_cols=110 Identities=21% Similarity=0.343 Sum_probs=82.4
Q ss_pred CCCCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEc----CCChhhhhhhHHHHHHHhhCC---------CeEEEEEeccc
Q 033251 2 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTA----SWCPPCKLMSPILSELAKKLP---------AVIFLKVDVDE 68 (123)
Q Consensus 2 ~~~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~----~~C~~C~~~~~~~~~~~~~~~---------~v~~~~i~~~~ 68 (123)
++...+++++ .+.+...+.. ...+=..+++|.+ ..|+-|..+...++-++..+. .+=|..||.++
T Consensus 37 ts~~~VI~~n-~d~~~~~v~~-~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e 114 (331)
T KOG2603|consen 37 TSESGVIRMN-DDKFSKFVRP-PPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE 114 (331)
T ss_pred cCCCCeEEec-CcchhhhccC-CCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc
Confidence 4677888995 6899998863 3455566777775 589999999999999988873 15678999999
Q ss_pred chhHHHhcCcccccEEEEec--CCeEE--EEE----ccCCHHHHHHHHHHHhc
Q 033251 69 LKSVAEEWAVEAMPTFVLTK--EGKVL--ERI----VGAKKDELQLAVEKHAT 113 (123)
Q Consensus 69 ~~~~~~~~~i~~~Pt~~~~~--~g~~~--~~~----~g~~~~~l~~~l~~~~~ 113 (123)
.++..+++++.++|++++|. .|+.. ..+ .|...|.+.+|+++...
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 99999999999999999993 22221 122 22346888888887653
No 192
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=8.5e-06 Score=45.11 Aligned_cols=52 Identities=23% Similarity=0.438 Sum_probs=38.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccch-----hHHHhc-CcccccEEEEe
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELK-----SVAEEW-AVEAMPTFVLT 87 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~-----~~~~~~-~i~~~Pt~~~~ 87 (123)
+..|..++||+|.+.+..+.+ .++.+..++++... +..+.. |..++|++++.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-----~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~ 60 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-----KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIG 60 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-----cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEEC
Confidence 567889999999999998882 36777777776554 333444 78899999883
No 193
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.1e-05 Score=48.80 Aligned_cols=89 Identities=25% Similarity=0.313 Sum_probs=67.1
Q ss_pred hhhcCCEEEEEEE-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc---------------------chhHHHhcCc
Q 033251 23 GIAAKKLIVVDFT-ASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE---------------------LKSVAEEWAV 78 (123)
Q Consensus 23 ~~~~~k~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~---------------------~~~~~~~~~i 78 (123)
+...++++|++|| ..++|.|-...-.+++...++. |..++-|..|. ..+++++||+
T Consensus 26 sd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv 105 (157)
T COG1225 26 SDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGV 105 (157)
T ss_pred HHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCc
Confidence 3457889999999 7899999999988988888876 57777777643 4567888886
Q ss_pred cc------------cc-EEEEecCCeEEEEEccCC----HHHHHHHHHHH
Q 033251 79 EA------------MP-TFVLTKEGKVLERIVGAK----KDELQLAVEKH 111 (123)
Q Consensus 79 ~~------------~P-t~~~~~~g~~~~~~~g~~----~~~l~~~l~~~ 111 (123)
.. .+ |+++.++|++...+...+ .+++.+.|+++
T Consensus 106 ~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 106 WGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 33 23 588889999999885553 46677666654
No 194
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.23 E-value=7.2e-05 Score=51.64 Aligned_cols=101 Identities=22% Similarity=0.251 Sum_probs=71.5
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhh------HHHHHHHhh-C--CCeEEEEEecccchhHHHhcC
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMS------PILSELAKK-L--PAVIFLKVDVDELKSVAEEWA 77 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~------~~~~~~~~~-~--~~v~~~~i~~~~~~~~~~~~~ 77 (123)
++.+ +..+|++.+ ++....+|+|+.+-- ...... ..+-+++.+ . .++.|+.||..+...+++++|
T Consensus 36 Vi~L-neKNfk~~l----Kkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLg 109 (383)
T PF01216_consen 36 VIDL-NEKNFKRAL----KKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLG 109 (383)
T ss_dssp CEEE--TTTHHHHH----HH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT
T ss_pred eEEc-chhHHHHHH----HhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcC
Confidence 3455 568999988 678899999998753 222222 222233332 2 379999999999999999999
Q ss_pred cccccEEEEecCCeEEEEEccC-CHHHHHHHHHHHhcc
Q 033251 78 VEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKHATT 114 (123)
Q Consensus 78 i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~ 114 (123)
+...+++.+|++|+.+... |. +++.|..||-.++..
T Consensus 110 v~E~~SiyVfkd~~~IEyd-G~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 110 VEEEGSIYVFKDGEVIEYD-GERSADTLVEFLLDLLED 146 (383)
T ss_dssp --STTEEEEEETTEEEEE--S--SHHHHHHHHHHHHSS
T ss_pred ccccCcEEEEECCcEEEec-CccCHHHHHHHHHHhccc
Confidence 9999999999999998876 66 899999999988764
No 195
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.18 E-value=5.7e-05 Score=42.92 Aligned_cols=92 Identities=18% Similarity=0.115 Sum_probs=66.1
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEecccchhHHHhcCcccccEEEE
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~ 86 (123)
..+++.+++++.+ ..++++||-|+.++++ .....+.+++..+. ++.|+... +.++.+.+++. .|++++
T Consensus 2 ~~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l 70 (97)
T cd02981 2 KELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVL 70 (97)
T ss_pred eecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEE
Confidence 4567777777765 5788889999998887 46677888888886 57776655 34666777764 488888
Q ss_pred ecCC-eEEEEEccC-CHHHHHHHHHH
Q 033251 87 TKEG-KVLERIVGA-KKDELQLAVEK 110 (123)
Q Consensus 87 ~~~g-~~~~~~~g~-~~~~l~~~l~~ 110 (123)
++.. .....+.|. +.+.|.+||..
T Consensus 71 ~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 71 FKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred eCCcccCCccCCCCCCHHHHHHHHHh
Confidence 8653 334446666 67899998864
No 196
>PRK10638 glutaredoxin 3; Provisional
Probab=98.14 E-value=2.2e-05 Score=43.60 Aligned_cols=58 Identities=17% Similarity=0.344 Sum_probs=41.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhH----HHhcCcccccEEEEecCCeEEEE
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSV----AEEWAVEAMPTFVLTKEGKVLER 95 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~~~ 95 (123)
+..|..+||++|.+.+..+++. ++.+..+|++..+.. .+..+...+|++++ +|+.+..
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~igG 65 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIGG 65 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEeC
Confidence 5578889999999999998863 566777788766533 34456778998855 5655543
No 197
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=98.13 E-value=1.6e-05 Score=44.70 Aligned_cols=58 Identities=28% Similarity=0.406 Sum_probs=42.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEec--ccc------------------------------hhHHHhcC
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDV--DEL------------------------------KSVAEEWA 77 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~--~~~------------------------------~~~~~~~~ 77 (123)
|..|+++.||+|..+.+.++++....+ ++.+....+ ... .....++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 467999999999999999999975554 455554433 221 13456789
Q ss_pred cccccEEEEec
Q 033251 78 VEAMPTFVLTK 88 (123)
Q Consensus 78 i~~~Pt~~~~~ 88 (123)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999865
No 198
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.11 E-value=2.2e-05 Score=44.38 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=36.2
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHH----HhcCcccccEEEEecCCeEE
Q 033251 37 SWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVA----EEWAVEAMPTFVLTKEGKVL 93 (123)
Q Consensus 37 ~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~----~~~~i~~~Pt~~~~~~g~~~ 93 (123)
+|||+|.+.+..+.+. ++.+..+|++.++++. +..+-..+|++++ +|+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 21 PRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred CCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 6999999999988776 3667777777665543 3346778999754 66543
No 199
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.09 E-value=6.9e-05 Score=44.03 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=69.9
Q ss_pred ehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhh---CCC-eEEEEEecccchhHHHhcCccc--ccEEE
Q 033251 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK---LPA-VIFLKVDVDELKSVAEEWAVEA--MPTFV 85 (123)
Q Consensus 12 ~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~---~~~-v~~~~i~~~~~~~~~~~~~i~~--~Pt~~ 85 (123)
+.++....+ ..+.+..+.|+.+ ..-..+...+.++++. +.+ +.|+.+|.+......+.||++. +|.+.
T Consensus 5 t~e~~~~~~----~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 5 TFENAEELT----EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred ccccHHHHh----cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence 345565555 4566666666622 2346789999999999 875 9999999999877899999987 89988
Q ss_pred EecCCe-EEEE-EccC-CHHHHHHHHHHHhc
Q 033251 86 LTKEGK-VLER-IVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 86 ~~~~g~-~~~~-~~g~-~~~~l~~~l~~~~~ 113 (123)
+..... .... ..+. +.+.|.+|++..+.
T Consensus 79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 885322 1222 3344 78999999998875
No 200
>PTZ00062 glutaredoxin; Provisional
Probab=98.05 E-value=5e-05 Score=49.25 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=48.4
Q ss_pred hHHHHHHhhhhcCCEEEEEE---EcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHh----cCcccccEEEEe
Q 033251 15 SWNEQLQKGIAAKKLIVVDF---TASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEE----WAVEAMPTFVLT 87 (123)
Q Consensus 15 ~~~~~~~~~~~~~k~~vv~f---~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~----~~i~~~Pt~~~~ 87 (123)
++.+.++....+++++|..- +.++|++|++....+++. ++.+..+|+++.+++.+. .+-..+|.+.+
T Consensus 101 ~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI- 174 (204)
T PTZ00062 101 DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV- 174 (204)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE-
Confidence 45555555556666666555 337999999998888854 677778888877655433 34556777766
Q ss_pred cCCeEEE
Q 033251 88 KEGKVLE 94 (123)
Q Consensus 88 ~~g~~~~ 94 (123)
+|+.+.
T Consensus 175 -~G~~IG 180 (204)
T PTZ00062 175 -NGELIG 180 (204)
T ss_pred -CCEEEc
Confidence 666553
No 201
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.99 E-value=0.00011 Score=46.76 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=28.9
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhhCCC--eEEEEE
Q 033251 30 IVVDFTASWCPPCKLMSPILSELAKKLPA--VIFLKV 64 (123)
Q Consensus 30 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~~--v~~~~i 64 (123)
.|.+|+...||+|....+.+.++.+.+++ +.+..+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 36789999999999999999999999965 444444
No 202
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=9e-05 Score=55.18 Aligned_cols=82 Identities=27% Similarity=0.287 Sum_probs=60.0
Q ss_pred HHHHhhhhcCCEEEEEEEcCCChhhhhhhHHH---HHHHhhCC-CeEEEEEecccchhHHHhcC--------ccccc-EE
Q 033251 18 EQLQKGIAAKKLIVVDFTASWCPPCKLMSPIL---SELAKKLP-AVIFLKVDVDELKSVAEEWA--------VEAMP-TF 84 (123)
Q Consensus 18 ~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~---~~~~~~~~-~v~~~~i~~~~~~~~~~~~~--------i~~~P-t~ 84 (123)
+.+..|..++||+++-+.-+||.+|+-|...- .++++... ++.-++||.++-|++-+.|. -.+.| |+
T Consensus 34 eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtV 113 (667)
T COG1331 34 EAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTV 113 (667)
T ss_pred HHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeE
Confidence 34555558999999999999999999885332 34444432 57888889988887655553 55799 68
Q ss_pred EEecCCeEEEEEccC
Q 033251 85 VLTKEGKVLERIVGA 99 (123)
Q Consensus 85 ~~~~~g~~~~~~~g~ 99 (123)
++..+|+++...+..
T Consensus 114 fLTPd~kPFfagTY~ 128 (667)
T COG1331 114 FLTPDGKPFFAGTYF 128 (667)
T ss_pred EECCCCceeeeeeec
Confidence 888999998865544
No 203
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.92 E-value=6.2e-05 Score=47.77 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=26.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEec
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDV 66 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~ 66 (123)
+|..|.|++|-.+.|.+.++...+++ +.+..|-.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEc
Confidence 68999999999999999999999985 66665543
No 204
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.81 E-value=0.00027 Score=46.58 Aligned_cols=106 Identities=23% Similarity=0.338 Sum_probs=69.4
Q ss_pred CCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEeccc--------------
Q 033251 4 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDE-------------- 68 (123)
Q Consensus 4 ~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~-------------- 68 (123)
+..+++++. .....++.- .+.++|.|+.|.+-+||+=..-.+.++++.++|.+ +.|..|-+.+
T Consensus 81 ns~vv~l~g-~~~~~ildf-~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~ 158 (237)
T PF00837_consen 81 NSPVVTLDG-QRSCRILDF-AKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPY 158 (237)
T ss_pred CCceEeeCC-CcceeHHHh-ccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCce
Confidence 444555532 222333333 36899999999999999999999999999999986 4555554422
Q ss_pred ----chhH------HHhcC--------------------ccccc-EEEEecCCeEEEEEc----cCCHHHHHHHHHHH
Q 033251 69 ----LKSV------AEEWA--------------------VEAMP-TFVLTKEGKVLERIV----GAKKDELQLAVEKH 111 (123)
Q Consensus 69 ----~~~~------~~~~~--------------------i~~~P-t~~~~~~g~~~~~~~----g~~~~~l~~~l~~~ 111 (123)
++.+ ++.+. -...| .+.+.++|+++..-. |+++++++++|+++
T Consensus 159 ~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 159 EIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred eecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 1111 11110 12478 466668999887532 22589999999875
No 205
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.80 E-value=9.5e-05 Score=52.83 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=42.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhH---HHh---------cCcccccEEEEecCCeEE
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSV---AEE---------WAVEAMPTFVLTKEGKVL 93 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~---~~~---------~~i~~~Pt~~~~~~g~~~ 93 (123)
|+.|..+|||+|.+.+..+.+. ++.+..+|+++.+.. ..+ .|..++|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 6789999999999999888774 688888888866532 222 36678999877 55543
No 206
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.76 E-value=0.0007 Score=39.78 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=55.0
Q ss_pred CChhhhhhhHHHHHHHhhCC--CeEEEEEecccchhHHHhcCccc----ccEEEEec-CCeEEEEEccC-CHHHHHHHHH
Q 033251 38 WCPPCKLMSPILSELAKKLP--AVIFLKVDVDELKSVAEEWAVEA----MPTFVLTK-EGKVLERIVGA-KKDELQLAVE 109 (123)
Q Consensus 38 ~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~~~~~~~~~i~~----~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~l~ 109 (123)
.-..-..+...+.++++.++ .+.|+.+|.+......+.||++. +|++.+.. +++....-... +.+.|++|++
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLE 108 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHH
Confidence 33445678999999999998 49999999998877889999974 99988875 33211111223 6789999987
Q ss_pred HH
Q 033251 110 KH 111 (123)
Q Consensus 110 ~~ 111 (123)
..
T Consensus 109 ~f 110 (111)
T cd03073 109 DF 110 (111)
T ss_pred Hh
Confidence 64
No 207
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00037 Score=46.25 Aligned_cols=39 Identities=26% Similarity=0.258 Sum_probs=27.2
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEE
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKV 64 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i 64 (123)
.+++.++.|....||+|....+.+++.....+++++...
T Consensus 83 ~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~ 121 (244)
T COG1651 83 YAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLR 121 (244)
T ss_pred CCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEE
Confidence 346788888888888887777777776666665444433
No 208
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.73 E-value=0.00063 Score=38.96 Aligned_cols=97 Identities=11% Similarity=0.188 Sum_probs=70.6
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEeccc--chhHHHhcCcc----c
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDE--LKSVAEEWAVE----A 80 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~--~~~~~~~~~i~----~ 80 (123)
..|.+..+|++.+. ...-+++.|..+-- .-...+..+.+.++...| -.+..|||.+ ...+|+.+.+. .
T Consensus 4 e~i~d~KdfKKLLR----Tr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp 78 (112)
T cd03067 4 EDISDHKDFKKLLR----TRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKP 78 (112)
T ss_pred ccccchHHHHHHHh----hcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCC
Confidence 35778889999984 34456666655543 334556678888888776 7889999986 78999999998 5
Q ss_pred cc-EEEEecCCeEEEEEccC-CHHHHHHHHH
Q 033251 81 MP-TFVLTKEGKVLERIVGA-KKDELQLAVE 109 (123)
Q Consensus 81 ~P-t~~~~~~g~~~~~~~g~-~~~~l~~~l~ 109 (123)
-| .+..|++|.-...+... +...+..|+.
T Consensus 79 ~~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 79 KPVELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred CcchhhcccCCCccccccchhhHHHHHHHhh
Confidence 55 47778899877777776 6677777664
No 209
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0004 Score=40.28 Aligned_cols=63 Identities=21% Similarity=0.366 Sum_probs=40.3
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccch-hHHHh----cCcccccEEEEecCCeEEE
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELK-SVAEE----WAVEAMPTFVLTKEGKVLE 94 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~-~~~~~----~~i~~~Pt~~~~~~g~~~~ 94 (123)
.++.++ .|..+||++|..++..|.+ .-.+..++.+|-..+. ++-+. -+-..+|.+++ +|+.+.
T Consensus 12 ~~~~VV--ifSKs~C~~c~~~k~ll~~---~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iG 79 (104)
T KOG1752|consen 12 SENPVV--IFSKSSCPYCHRAKELLSD---LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIG 79 (104)
T ss_pred hcCCEE--EEECCcCchHHHHHHHHHh---CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEc
Confidence 444433 5889999999998888887 1124566666665443 33322 23557888777 777663
No 210
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.24 E-value=0.0019 Score=39.88 Aligned_cols=58 Identities=26% Similarity=0.345 Sum_probs=40.1
Q ss_pred EEEEEcC------CChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHH----HhcCc----ccccEEEEecCCeEEEE
Q 033251 31 VVDFTAS------WCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVA----EEWAV----EAMPTFVLTKEGKVLER 95 (123)
Q Consensus 31 vv~f~~~------~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~----~~~~i----~~~Pt~~~~~~g~~~~~ 95 (123)
|+.|+++ +|++|..++..|+.+ ++.|..+|++.++++. +.++- ..+|.+++ +|+.+..
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IGG 73 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLGG 73 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEec
Confidence 3456666 999999999888765 5778888987765543 33343 56787766 6655543
No 211
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=97.21 E-value=0.0025 Score=34.40 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=50.1
Q ss_pred EEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccchhHHHhcCcccccEEEEe
Q 033251 29 LIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDELKSVAEEWAVEAMPTFVLT 87 (123)
Q Consensus 29 ~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~ 87 (123)
..+..|-+...+.+......+.++.+.+- ...+-.||+.+++.+++.++|-.+||++-.
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 34566777777999999999999988874 399999999999999999999999996543
No 212
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.20 E-value=0.017 Score=34.45 Aligned_cols=101 Identities=19% Similarity=0.301 Sum_probs=66.3
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHH-hh---CCCeEEEEEecc-----cchhHHHhc
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELA-KK---LPAVIFLKVDVD-----ELKSVAEEW 76 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~-~~---~~~v~~~~i~~~-----~~~~~~~~~ 76 (123)
..+.+. .-+|++.+ .+.+.++|.|=... +--.-+..+.+++ +. -+++-+..+.+. +|.+++++|
T Consensus 5 G~v~LD-~~tFdKvi----~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery 77 (126)
T PF07912_consen 5 GCVPLD-ELTFDKVI----PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERY 77 (126)
T ss_dssp TSEEES-TTHHHHHG----GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHT
T ss_pred ceeecc-ceehhhee----ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHh
Confidence 445664 45888888 77899999995432 2233455566665 33 346888888764 578999999
Q ss_pred Cc--ccccEEEEec-CCeEEEEE--ccC-CHHHHHHHHHHHhc
Q 033251 77 AV--EAMPTFVLTK-EGKVLERI--VGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 77 ~i--~~~Pt~~~~~-~g~~~~~~--~g~-~~~~l~~~l~~~~~ 113 (123)
++ ..+|.+.+|. +....-++ .|. +.+.|++|+.+..+
T Consensus 78 ~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 78 KIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp T-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred CCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 99 5589988886 44444455 555 89999999988643
No 213
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.13 E-value=0.017 Score=33.25 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=61.4
Q ss_pred EEEEeehhhHHHHHHhhhh-cCCEEEEEEEcCCChhhhhhhHHHHHHHhhC-CCeEEEEEecccchhHHHhcCcccccEE
Q 033251 7 VISCHTVESWNEQLQKGIA-AKKLIVVDFTASWCPPCKLMSPILSELAKKL-PAVIFLKVDVDELKSVAEEWAVEAMPTF 84 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~-~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~-~~v~~~~i~~~~~~~~~~~~~i~~~Pt~ 84 (123)
+..|.+.+++++.+ . ++.++||-|+..--+ .....+.+++..+ .+..|... ...++...+++. .|.+
T Consensus 2 v~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~~-~~~i 70 (102)
T cd03066 2 VEIINSERELQAFE----NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFAT---FDSKVAKKLGLK-MNEV 70 (102)
T ss_pred ceEcCCHHHHHHHh----cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEE---CcHHHHHHcCCC-CCcE
Confidence 35677777888877 5 566777777765433 3456677788877 45766432 233556777774 6888
Q ss_pred EEecC-CeEEEEE-ccC-CHHHHHHHHHHH
Q 033251 85 VLTKE-GKVLERI-VGA-KKDELQLAVEKH 111 (123)
Q Consensus 85 ~~~~~-g~~~~~~-~g~-~~~~l~~~l~~~ 111 (123)
+++++ ......+ .|. +.+.|.+||...
T Consensus 71 ~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 71 DFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 88854 3333345 556 789999998754
No 214
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.13 E-value=0.0014 Score=40.73 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=32.3
Q ss_pred cCCEEEEEEE-cCCChhhhhh-hHHHHHHHhhCC--Ce-EEEEEecc
Q 033251 26 AKKLIVVDFT-ASWCPPCKLM-SPILSELAKKLP--AV-IFLKVDVD 67 (123)
Q Consensus 26 ~~k~~vv~f~-~~~C~~C~~~-~~~~~~~~~~~~--~v-~~~~i~~~ 67 (123)
.++++||+|| ..||+.|... .+.+.+..+++. ++ .++.|..+
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 4566666666 8899999998 899988888875 56 47777664
No 215
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=97.12 E-value=0.016 Score=32.99 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=59.9
Q ss_pred hhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeE-
Q 033251 14 ESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKV- 92 (123)
Q Consensus 14 ~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~- 92 (123)
+++...+.. -++.+.++.|..+. ..|..+...+++++...+.+.+...+.+. ..|++.+..+|+.
T Consensus 8 ~qL~~~f~~--l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~ 73 (94)
T cd02974 8 QQLKAYLER--LENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDT 73 (94)
T ss_pred HHHHHHHHh--CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcc
Confidence 456666653 35666666776655 99999999999999998877776544432 4799999877633
Q ss_pred EEEEccC-CHHHHHHHHHHH
Q 033251 93 LERIVGA-KKDELQLAVEKH 111 (123)
Q Consensus 93 ~~~~~g~-~~~~l~~~l~~~ 111 (123)
--++.|. .-.++..+|..+
T Consensus 74 gIrF~GiP~GhEf~Slilai 93 (94)
T cd02974 74 GIRFAGIPMGHEFTSLVLAL 93 (94)
T ss_pred cEEEEecCCchhHHHHHHHh
Confidence 2577788 467888887654
No 216
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0073 Score=38.83 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=35.4
Q ss_pred hHHHhcCcccccEEEEecCCeEEEEEcc--C-CHHHHHHHHHHHhc
Q 033251 71 SVAEEWAVEAMPTFVLTKEGKVLERIVG--A-KKDELQLAVEKHAT 113 (123)
Q Consensus 71 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g--~-~~~~l~~~l~~~~~ 113 (123)
.+++++++.++||+++-++|+....-.| . +++.+..++.+.+.
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 4677889999999999999998887777 3 67888888877664
No 217
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=96.87 E-value=0.037 Score=33.45 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=53.4
Q ss_pred hhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCe-
Q 033251 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGK- 91 (123)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~- 91 (123)
...+++.+.++...+-++|+-=+-.. .=......++++...-.. ..+.-+|.+.++|+|+.+|++++.+++.
T Consensus 11 ~~~Lk~l~~~a~~~g~~~VlRG~~~~--~~~~T~~~i~~L~~~~~~-----~~v~IdP~lF~~f~I~~VPa~V~~~~~~~ 83 (130)
T TIGR02742 11 EPLLKQLLDQAEALGAPLVIRGLLDN--GFKATATRIQSLIKDGGK-----SGVQIDPQWFKQFDITAVPAFVVVKDGLA 83 (130)
T ss_pred HHHHHHHHHHHHHhCCeEEEeCCCCC--CHHHHHHHHHHHHhcCCC-----CcEEEChHHHhhcCceEcCEEEEECCCCc
Confidence 45677778776566655443322332 223444444555443322 3444568999999999999999998774
Q ss_pred ----------EEEEEccC-CHHHHHHHHH
Q 033251 92 ----------VLERIVGA-KKDELQLAVE 109 (123)
Q Consensus 92 ----------~~~~~~g~-~~~~l~~~l~ 109 (123)
......|. +.+.-.+.+.
T Consensus 84 c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 84 CLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred ccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 34455555 5444444444
No 218
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=96.85 E-value=0.043 Score=33.43 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=66.7
Q ss_pred hHHHHHHhh----hhcCCEEEEEEEcCCCh----hhhhh--hHHHHHHHhhCCCeEEEEEecccch--------------
Q 033251 15 SWNEQLQKG----IAAKKLIVVDFTASWCP----PCKLM--SPILSELAKKLPAVIFLKVDVDELK-------------- 70 (123)
Q Consensus 15 ~~~~~~~~~----~~~~k~~vv~f~~~~C~----~C~~~--~~~~~~~~~~~~~v~~~~i~~~~~~-------------- 70 (123)
.|.+++++| ..+.|+.+|+..++..+ .|++. .+.+-++.+. ++.+..-|+....
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~g 82 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHFG 82 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhhh
Confidence 466777776 67899999999998774 45544 2344444442 6777777776532
Q ss_pred ----hHHHhcCcccccEEEEec----CCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 71 ----SVAEEWAVEAMPTFVLTK----EGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 71 ----~~~~~~~i~~~Pt~~~~~----~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
...+.++...+|.+.+.. .-.++.+..|. +++++...|...++
T Consensus 83 ~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 83 SVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred HHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 134567799999866652 22788899999 78888888776543
No 219
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.83 E-value=0.037 Score=40.91 Aligned_cols=90 Identities=16% Similarity=0.144 Sum_probs=64.0
Q ss_pred hhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeE
Q 033251 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKV 92 (123)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 92 (123)
.+++...+.. -++.+.+..|. +.|..|..+...++++++.-+.+.+...+.+ ...|++.+.++|+.
T Consensus 7 ~~~l~~~~~~--~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~ 72 (517)
T PRK15317 7 KTQLKQYLEL--LERPIELVASL-DDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGED 72 (517)
T ss_pred HHHHHHHHHh--CCCCEEEEEEe-CCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCcc
Confidence 3456666654 35555555554 4899999999999999999888877553322 34799888876644
Q ss_pred E-EEEccC-CHHHHHHHHHHHhcccc
Q 033251 93 L-ERIVGA-KKDELQLAVEKHATTVE 116 (123)
Q Consensus 93 ~-~~~~g~-~~~~l~~~l~~~~~~~~ 116 (123)
. -++.|. .-.++..+|..++..+.
T Consensus 73 ~~i~f~g~P~g~Ef~s~i~~i~~~~~ 98 (517)
T PRK15317 73 TGVRFAGIPMGHEFTSLVLALLQVGG 98 (517)
T ss_pred ceEEEEecCccHHHHHHHHHHHHhcC
Confidence 3 577788 57899999998876443
No 220
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.79 E-value=0.051 Score=35.86 Aligned_cols=44 Identities=30% Similarity=0.455 Sum_probs=33.1
Q ss_pred HHHhcCcccccEEEEecCCeEEEEEccC-CHHHHHHHHHHHhccccccc
Q 033251 72 VAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKHATTVENAT 119 (123)
Q Consensus 72 ~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~~~~~~ 119 (123)
.++++||+++|++++ +|+ ....|. +.+.+...|+++++...+..
T Consensus 176 ~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~~~~~~~ 220 (225)
T COG2761 176 AAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLAEKAEEH 220 (225)
T ss_pred HHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHhcccccC
Confidence 456789999999999 222 344577 89999999999997765443
No 221
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.79 E-value=0.034 Score=32.12 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=58.8
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEecccchhHHHhcCcccccEEEE
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~ 86 (123)
.++.+.+++++.+ ..++++||-|+..--. .....+.++++.+. +..|....- ..+...+++ .|++++
T Consensus 3 ~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~---~~~~~~~~~--~~~ivl 70 (104)
T cd03069 3 VELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSD---KQLLEKYGY--GEGVVL 70 (104)
T ss_pred cccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEECh---HHHHHhcCC--CCceEE
Confidence 4566777777766 4677777777766433 35667777888874 577643332 356778888 677777
Q ss_pred ecC-------CeEEEEEccC-CHHHHHHHHHHH
Q 033251 87 TKE-------GKVLERIVGA-KKDELQLAVEKH 111 (123)
Q Consensus 87 ~~~-------g~~~~~~~g~-~~~~l~~~l~~~ 111 (123)
++. ......+.|. +.+.|.+||...
T Consensus 71 ~~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 71 FRPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred EechhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 721 1112235665 788999998754
No 222
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.71 E-value=0.02 Score=35.95 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=50.6
Q ss_pred hhhHHHHHHHhhCC-CeEEEEEecccchhHHHhcCcccccEEEEecC-CeEEEEEccC--CHHHHHHHHHHHh
Q 033251 44 LMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKE-GKVLERIVGA--KKDELQLAVEKHA 112 (123)
Q Consensus 44 ~~~~~~~~~~~~~~-~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~-g~~~~~~~g~--~~~~l~~~l~~~~ 112 (123)
.....+.++++.+. .+.|+.+. +.++++.+++.. |++++++. ++....+.|. +.+.|.+||....
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhc
Confidence 34667888888887 58888776 566888999988 99999976 3445666774 8999999999874
No 223
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=96.67 E-value=0.01 Score=33.24 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=58.4
Q ss_pred CEEEEEEEcCCChhhhhhhHHHHHHHhhCC-C-eEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC--CHHH
Q 033251 28 KLIVVDFTASWCPPCKLMSPILSELAKKLP-A-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA--KKDE 103 (123)
Q Consensus 28 k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~-v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~ 103 (123)
..++=.|.+...+.++.....+.++.+.+- + ..+-.||+.++|.+++.++|-.+||++-.. -.+..+..|. +.++
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~-P~P~rriiGdls~~~~ 81 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKIL-PPPVRKIIGDLSDRER 81 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcC-CCCcceeeccccchHH
Confidence 456667778889999999999999977654 3 888899999999999999999999965442 2345555665 3444
Q ss_pred H
Q 033251 104 L 104 (123)
Q Consensus 104 l 104 (123)
+
T Consensus 82 v 82 (87)
T TIGR02654 82 V 82 (87)
T ss_pred H
Confidence 4
No 224
>PRK09301 circadian clock protein KaiB; Provisional
Probab=96.67 E-value=0.0094 Score=34.37 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=63.8
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC-C-eEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC--CH
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLP-A-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA--KK 101 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~-v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~--~~ 101 (123)
+...++=.|.+...+.++.....+.++.+.+- + ..+-.||+.+++.+++.++|-.+||++-.- -.+..+..|. +.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~-P~P~rriiGDlsd~ 82 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKIL-PPPVRKIIGDLSDR 82 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcC-CCCcceeecccccH
Confidence 45677777889999999999999999977654 3 888999999999999999999999955442 2355666676 46
Q ss_pred HHHHHHH
Q 033251 102 DELQLAV 108 (123)
Q Consensus 102 ~~l~~~l 108 (123)
+++..-+
T Consensus 83 ~kVL~~L 89 (103)
T PRK09301 83 EKVLIGL 89 (103)
T ss_pred HHHHHhc
Confidence 6665444
No 225
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.63 E-value=0.068 Score=39.51 Aligned_cols=91 Identities=15% Similarity=0.140 Sum_probs=65.1
Q ss_pred hhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCe-E
Q 033251 14 ESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGK-V 92 (123)
Q Consensus 14 ~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~ 92 (123)
.++...+.. -++.+.++.|.. .|..|..+...++++++.-+.+.+...+.+. ...|++.+..+|+ .
T Consensus 8 ~~l~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~ 74 (515)
T TIGR03140 8 AQLKSYLAS--LENPVTLVLSAG-SHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADT 74 (515)
T ss_pred HHHHHHHHh--cCCCEEEEEEeC-CCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCccc
Confidence 456666654 355555555555 7999999999999999998888876554332 3569998887765 3
Q ss_pred EEEEccC-CHHHHHHHHHHHhccccc
Q 033251 93 LERIVGA-KKDELQLAVEKHATTVEN 117 (123)
Q Consensus 93 ~~~~~g~-~~~~l~~~l~~~~~~~~~ 117 (123)
--++.|. .-.++..+|..++..+..
T Consensus 75 ~i~f~g~P~g~Ef~s~i~~i~~~~~~ 100 (515)
T TIGR03140 75 GIRFAGIPGGHEFTSLVLAILQVGGH 100 (515)
T ss_pred ceEEEecCCcHHHHHHHHHHHHhcCC
Confidence 3577788 578999999988765433
No 226
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=96.35 E-value=0.024 Score=38.02 Aligned_cols=40 Identities=18% Similarity=0.046 Sum_probs=32.7
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEE
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKV 64 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i 64 (123)
..||+.+++..+.|||+|...+=.+-....+|.++.+...
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~ 95 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYH 95 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEe
Confidence 6899999999999999999987777777777888744443
No 227
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=96.30 E-value=0.097 Score=30.83 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=42.6
Q ss_pred hhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhC---CCeEEEEEecccchhHHHhcCcccccEEEEecC
Q 033251 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL---PAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89 (123)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~---~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~ 89 (123)
...+++.+.++...+-+ +.|-.---+ .+.+.+..+.+-. +.. .++.-+|.+.++|+|+.+|++++.++
T Consensus 10 ~~~L~~l~~~a~~~~~~--~V~RG~~~g---~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVV--VVFRGFPDG---SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCCcE--EEEECCCCC---CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 45778888776455333 334433222 5555554444443 222 44455688999999999999999987
No 228
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=96.12 E-value=0.19 Score=32.76 Aligned_cols=79 Identities=29% Similarity=0.482 Sum_probs=51.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc------------------chhHHHhcCcc--cccEEEEecCC
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE------------------LKSVAEEWAVE--AMPTFVLTKEG 90 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~------------------~~~~~~~~~i~--~~Pt~~~~~~g 90 (123)
|=.|.+..|+.|=.....+.++..+ +++.....++|- .....+.++.. .+|.+++ ||
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG 78 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NG 78 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CC
Confidence 4467789999999999999999999 477766666542 12233444444 4888888 55
Q ss_pred eEEEEEccCCHHHHHHHHHHHhcc
Q 033251 91 KVLERIVGAKKDELQLAVEKHATT 114 (123)
Q Consensus 91 ~~~~~~~g~~~~~l~~~l~~~~~~ 114 (123)
+.. ..|.+...+...|.+....
T Consensus 79 ~~~--~~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 79 REH--RVGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp TEE--EETT-HHHHHHHHHHHHHT
T ss_pred eee--eeccCHHHHHHHHHHhhcc
Confidence 444 4577888999998888665
No 229
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.86 E-value=0.013 Score=33.82 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=25.4
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL 69 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~ 69 (123)
..|+.++|+.|++.+..+++. ++.|..+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccC
Confidence 468899999999998877763 666777777543
No 230
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.27 Score=31.73 Aligned_cols=87 Identities=20% Similarity=0.310 Sum_probs=62.3
Q ss_pred cCCEEEEEEE-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc----------------------------chhHHH
Q 033251 26 AKKLIVVDFT-ASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE----------------------------LKSVAE 74 (123)
Q Consensus 26 ~~k~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~----------------------------~~~~~~ 74 (123)
.+|.+|++|| ++.-+.|=-....+.+....+. |+.++.+++|. ..++++
T Consensus 32 ~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~ 111 (194)
T COG0450 32 YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIAR 111 (194)
T ss_pred cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHH
Confidence 3489999999 6788888877777777777765 67777777643 457888
Q ss_pred hcCccc----cc---EEEEecCCeEEEEEc-----cCCHHHHHHHHHHHh
Q 033251 75 EWAVEA----MP---TFVLTKEGKVLERIV-----GAKKDELQLAVEKHA 112 (123)
Q Consensus 75 ~~~i~~----~P---t~~~~~~g~~~~~~~-----g~~~~~l~~~l~~~~ 112 (123)
.||+-. .. ++++.++|.+..... |.+.+++.+.|+.+-
T Consensus 112 ~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 112 AYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred HcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 898753 22 477778887766443 446788888887653
No 231
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.80 E-value=0.0042 Score=42.50 Aligned_cols=86 Identities=16% Similarity=0.310 Sum_probs=65.6
Q ss_pred CCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEe-cccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHHHH
Q 033251 27 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVD-VDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDEL 104 (123)
Q Consensus 27 ~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~-~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l 104 (123)
...+-+.||++|||..+..+|.+.-....++.+..+.++ ....++....|++-+.|++++... ..-.++-|. +...|
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~-t~~~~~~~~r~l~sL 154 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQ-TCPASYRGERDLASL 154 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecc-ccchhhcccccHHHH
Confidence 568888999999999999999999988888866655543 234567789999999999777643 233444566 67888
Q ss_pred HHHHHHHhc
Q 033251 105 QLAVEKHAT 113 (123)
Q Consensus 105 ~~~l~~~~~ 113 (123)
.++..+.++
T Consensus 155 v~fy~~i~~ 163 (319)
T KOG2640|consen 155 VNFYTEITP 163 (319)
T ss_pred HHHHHhhcc
Confidence 888887775
No 232
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.77 E-value=0.1 Score=28.20 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=40.2
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc----hhHHHhcCcccccEEEEecCCeEEEEEccCCHHHHHHH
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL----KSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLA 107 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~----~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 107 (123)
..++.++|++|.+.+-.+.+. ++.+-.++++.. +++.+..+...+|+++...+|..+. ....|.++
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~-----es~~I~~y 72 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMF-----ESADIVKY 72 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEE-----cHHHHHHH
Confidence 456678999999888777665 344444444432 3444444567899986543443222 34555555
Q ss_pred HHH
Q 033251 108 VEK 110 (123)
Q Consensus 108 l~~ 110 (123)
|++
T Consensus 73 L~~ 75 (77)
T cd03041 73 LFK 75 (77)
T ss_pred HHH
Confidence 554
No 233
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=95.76 E-value=0.13 Score=27.62 Aligned_cols=71 Identities=14% Similarity=0.262 Sum_probs=41.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc--cchhHHHhcCcccccEEEEec--CCeEEEEEccCCHHHHHH
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD--ELKSVAEEWAVEAMPTFVLTK--EGKVLERIVGAKKDELQL 106 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~--~~~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~g~~~~~l~~ 106 (123)
+..|+.+.||+|++.+-.+... ++.+-.++.+ ...++ ..-+...+|+++... +|..+. ....+.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~-----eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV-----DSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE-----cHHHHHH
Confidence 3457789999999998666554 3333333333 22333 334567899988753 233322 3456666
Q ss_pred HHHHHh
Q 033251 107 AVEKHA 112 (123)
Q Consensus 107 ~l~~~~ 112 (123)
.|++.+
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 666654
No 234
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.057 Score=29.32 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=37.1
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc--------------chhH--HHhcCcccccEEEEecCCeEE
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE--------------LKSV--AEEWAVEAMPTFVLTKEGKVL 93 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~--------------~~~~--~~~~~i~~~Pt~~~~~~g~~~ 93 (123)
..|++..||.|..+...++++. +.+-.+++.. .+++ .+..|--++|.++...+..++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~-----v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN-----VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC-----CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 5699999999998888877764 4444455432 2222 345566689998776554333
No 235
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=95.61 E-value=0.033 Score=32.90 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=27.0
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccch
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELK 70 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~ 70 (123)
..|+.++|+.|++....+++ .++.+..+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCCh
Confidence 46789999999999988877 36777888876654
No 236
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.59 E-value=0.054 Score=28.75 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=36.8
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc-chhHHHhcCcccccEEEEecCCeEE
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE-LKSVAEEWAVEAMPTFVLTKEGKVL 93 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~-~~~~~~~~~i~~~Pt~~~~~~g~~~ 93 (123)
.|+.++|++|.+.+-.+.+..-. +.+..++... .+++.+......+|++..- +|..+
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~~~-~g~~l 60 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLVLG-NGTVI 60 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEEEC-CCcEE
Confidence 56789999999987777665433 4445555433 3455555667789999653 35443
No 237
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=95.58 E-value=0.29 Score=35.27 Aligned_cols=96 Identities=17% Similarity=0.238 Sum_probs=58.8
Q ss_pred hHHHHHHhhhhcCCEEEEEEEcCCChhhhhhh-HHHHH-HHhhCC--CeEEEEEecccc--hhHHHhcCcccccEEEEe-
Q 033251 15 SWNEQLQKGIAAKKLIVVDFTASWCPPCKLMS-PILSE-LAKKLP--AVIFLKVDVDEL--KSVAEEWAVEAMPTFVLT- 87 (123)
Q Consensus 15 ~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~-~~~~~-~~~~~~--~v~~~~i~~~~~--~~~~~~~~i~~~Pt~~~~- 87 (123)
++.+.+..+ +..+.++|.|.+...-...++. -.|.. .....- .+..+.|+.... ..+..-|.+..+|++.+.
T Consensus 7 nipeAIa~a-K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg 85 (506)
T KOG2507|consen 7 NIPEAIAEA-KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIG 85 (506)
T ss_pred chHHHHHHh-hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeec
Confidence 345566665 4455556666666666666665 22322 222211 245555554432 334556788899986555
Q ss_pred cCCeEEEEEccC-CHHHHHHHHHHH
Q 033251 88 KEGKVLERIVGA-KKDELQLAVEKH 111 (123)
Q Consensus 88 ~~g~~~~~~~g~-~~~~l~~~l~~~ 111 (123)
..|..+....|. ..++|...|++.
T Consensus 86 ~sGtpLevitg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 86 FSGTPLEVITGFVTADELASSIEKV 110 (506)
T ss_pred CCCceeEEeeccccHHHHHHHHHHH
Confidence 799999999999 778888777764
No 238
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.18 E-value=0.041 Score=32.21 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=25.7
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL 69 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~ 69 (123)
..|+.++|+.|++.+..+++. ++.|-.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCC
Confidence 467899999999998877763 677777777654
No 239
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.03 E-value=0.062 Score=31.64 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=27.5
Q ss_pred CEEEEEEEcCCChhhhhhhHHHHHHHhhCC
Q 033251 28 KLIVVDFTASWCPPCKLMSPILSELAKKLP 57 (123)
Q Consensus 28 k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~ 57 (123)
|.+++.|..|.|+.|......+.++..+|+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999999998886
No 240
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=94.95 E-value=0.012 Score=32.65 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=44.9
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccchhHHHhcCcccccEEE
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDELKSVAEEWAVEAMPTFV 85 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~~~~~~~~~i~~~Pt~~ 85 (123)
.|-+...+.+.+....++.+.+.+- .+.+-.||+.+++.+++.++|-.+||++
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 3556666788889999999988754 4999999999999999999999999865
No 241
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=94.84 E-value=0.067 Score=27.47 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=33.4
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccch--hHHHhcCcccccEEEEe
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELK--SVAEEWAVEAMPTFVLT 87 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~--~~~~~~~i~~~Pt~~~~ 87 (123)
.|+.++|+.|.+.+-.+....-. +....++..... ++.+..+-..+|++...
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~ 56 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLEDG 56 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEEC
Confidence 57778999999888877766332 333444443322 24555677789988763
No 242
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=94.82 E-value=0.07 Score=32.25 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=23.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE 68 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~ 68 (123)
+..|+.++|+.|++....+++. ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccC
Confidence 4567899999999988776554 55666666643
No 243
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.57 Score=29.20 Aligned_cols=88 Identities=23% Similarity=0.349 Sum_probs=59.7
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccc--------h---hHH-HhcCcc-----------
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDEL--------K---SVA-EEWAVE----------- 79 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~--------~---~~~-~~~~i~----------- 79 (123)
-++|+++|.=.++-|+.--+.. .++.|.++|. ++.+...-|++. . .+| ..||++
T Consensus 23 ~~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG 101 (162)
T COG0386 23 YKGKVLLIVNTASKCGFTPQYE-GLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNG 101 (162)
T ss_pred hCCcEEEEEEcccccCCcHhHH-HHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecC
Confidence 6899999999999998866443 4566666665 466666655321 1 111 122221
Q ss_pred -------------------------cccEEEEecCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 80 -------------------------AMPTFVLTKEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 80 -------------------------~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
.+--+++.++|+++.|+.-. .++++...|+++++
T Consensus 102 ~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 102 KNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred CCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 12237788999999999887 68999999988875
No 244
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=94.74 E-value=0.37 Score=32.02 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=36.0
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhh-----CCCeEEEEEecc
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKK-----LPAVIFLKVDVD 67 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~-----~~~v~~~~i~~~ 67 (123)
..|+++||.+...+|..|..-...++.|..+ +++|.|+.||-.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 5799999999999999999888888777633 457999999864
No 245
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=94.61 E-value=0.23 Score=26.18 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=30.3
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEE
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~ 86 (123)
.++..+|++|++.+-.+....-. +....++........+..+-..+|+++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~~ 53 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILEK 53 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEEe
Confidence 46678999999887776655322 2333344333333334445567898854
No 246
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=94.59 E-value=0.22 Score=33.14 Aligned_cols=86 Identities=24% Similarity=0.330 Sum_probs=59.9
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc------------------cchhHHHhcCcccccEEEEe
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD------------------ELKSVAEEWAVEAMPTFVLT 87 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~------------------~~~~~~~~~~i~~~Pt~~~~ 87 (123)
+...||=.|.+..|..|=-....+.+++.+ +++.-..+++| ......+.|+-.+++|--.+
T Consensus 40 k~~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQav 118 (261)
T COG5429 40 KPLGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAV 118 (261)
T ss_pred CCceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhe
Confidence 335566677789999999999999999887 45555555443 12344566777776664444
Q ss_pred cCCeEEEEEccCCHHHHHHHHHHHhcc
Q 033251 88 KEGKVLERIVGAKKDELQLAVEKHATT 114 (123)
Q Consensus 88 ~~g~~~~~~~g~~~~~l~~~l~~~~~~ 114 (123)
-+|+.... |.++..+.+.|+..-..
T Consensus 119 vnGr~~~~--Gad~~~i~~~i~a~~~~ 143 (261)
T COG5429 119 VNGRVHAN--GADPGAIEDAIAAMARR 143 (261)
T ss_pred eechhhhc--CCCHHHHHHHHHHhhcc
Confidence 46655544 77888999998877644
No 247
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.35 Score=30.46 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=61.4
Q ss_pred hhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc--------chh----HHHhcCc-----------
Q 033251 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE--------LKS----VAEEWAV----------- 78 (123)
Q Consensus 24 ~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~--------~~~----~~~~~~i----------- 78 (123)
..+|+++++.=-++.|+.-..-=..++.+.+.|. ++.+...-|.+ +.+ ++.+|+.
T Consensus 31 ~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if~KidVN 110 (171)
T KOG1651|consen 31 QYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIFQKIDVN 110 (171)
T ss_pred HhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccEeEEecC
Confidence 3689999999999999988855558888888885 57777666642 111 1222221
Q ss_pred ------------c--------c----ccEEEEecCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 79 ------------E--------A----MPTFVLTKEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 79 ------------~--------~----~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
. . +--+++.++|+++.|+... ++.++..-|++++.
T Consensus 111 G~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 111 GDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA 170 (171)
T ss_pred CCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence 0 1 1237777899999998777 57777777777764
No 248
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.5 Score=27.22 Aligned_cols=73 Identities=22% Similarity=0.218 Sum_probs=47.3
Q ss_pred HHHHhhhhcCCEEEEEEEcC---CChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCc-ccccE-EEEecCCeE
Q 033251 18 EQLQKGIAAKKLIVVDFTAS---WCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAV-EAMPT-FVLTKEGKV 92 (123)
Q Consensus 18 ~~~~~~~~~~k~~vv~f~~~---~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i-~~~Pt-~~~~~~g~~ 92 (123)
+.++....++++++.+-.++ .|+++.+....+.... -+.|..+|+-.++++.+.+.. ..+|| --+|-+|+.
T Consensus 6 ~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g----~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEf 81 (105)
T COG0278 6 DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACG----VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEF 81 (105)
T ss_pred HHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcC----CcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEE
Confidence 34444446777777666664 5665555554444332 288999999999998877753 45787 455668766
Q ss_pred EE
Q 033251 93 LE 94 (123)
Q Consensus 93 ~~ 94 (123)
+.
T Consensus 82 vG 83 (105)
T COG0278 82 VG 83 (105)
T ss_pred ec
Confidence 64
No 249
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=94.44 E-value=0.18 Score=26.50 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=34.1
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc----cchhHHHhcCcccccEEEEe
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD----ELKSVAEEWAVEAMPTFVLT 87 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~----~~~~~~~~~~i~~~Pt~~~~ 87 (123)
.|+.++|++|++.+-.+....-.+ ....++.. ..+++.+......+|++...
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~ 58 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGIDV---PLVTVDLAAGEQRSPEFLAKNPAGTVPVLELD 58 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCCc---eEEEeecccCccCCHHHHhhCCCCCCCEEEeC
Confidence 567789999999988877664333 33344432 23455565667789999763
No 250
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.37 E-value=0.67 Score=28.36 Aligned_cols=76 Identities=13% Similarity=0.238 Sum_probs=55.1
Q ss_pred CCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCccc----ccEEEEecCCeEEEEEccC-CH
Q 033251 27 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEA----MPTFVLTKEGKVLERIVGA-KK 101 (123)
Q Consensus 27 ~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~----~Pt~~~~~~g~~~~~~~g~-~~ 101 (123)
...-++.+++|.|+=|..+...++. .++.+-.+..++...+.++++|.. ==|.++ +|+.+. |- +.
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~vE---GHVPa 93 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYVE---GHVPA 93 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEEe---ccCCH
Confidence 3456778899999999998887772 378888888888888888898753 224554 665443 44 77
Q ss_pred HHHHHHHHHHh
Q 033251 102 DELQLAVEKHA 112 (123)
Q Consensus 102 ~~l~~~l~~~~ 112 (123)
+.++.++++--
T Consensus 94 ~aI~~ll~~~p 104 (149)
T COG3019 94 EAIARLLAEKP 104 (149)
T ss_pred HHHHHHHhCCC
Confidence 88888877543
No 251
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=93.95 E-value=0.52 Score=31.85 Aligned_cols=90 Identities=22% Similarity=0.412 Sum_probs=56.8
Q ss_pred hcCCEEEEEEEcCCChh-hhhhhHHHHHHHhhCC---Ce----EEEEEeccc--------------------------ch
Q 033251 25 AAKKLIVVDFTASWCPP-CKLMSPILSELAKKLP---AV----IFLKVDVDE--------------------------LK 70 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~-C~~~~~~~~~~~~~~~---~v----~~~~i~~~~--------------------------~~ 70 (123)
-.||.++++|.-+.||. |=..+..+-++.+... ++ .|..+|-.. -.
T Consensus 137 f~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk 216 (280)
T KOG2792|consen 137 FLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVK 216 (280)
T ss_pred cccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHH
Confidence 47999999999999974 6666665555554432 32 345555522 12
Q ss_pred hHHHhcCccccc-------------E---EEEecCCeEEEEEccC-CHHHHHHHHHHHhcc
Q 033251 71 SVAEEWAVEAMP-------------T---FVLTKEGKVLERIVGA-KKDELQLAVEKHATT 114 (123)
Q Consensus 71 ~~~~~~~i~~~P-------------t---~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~ 114 (123)
.+|+.|.|..-+ + +++...|+.+..+... +.+++.+.|.+++..
T Consensus 217 ~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 217 QVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred HHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 456667654322 2 2333678877776555 789999888887654
No 252
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=93.93 E-value=0.69 Score=26.85 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=54.9
Q ss_pred EEEEeehhhHHHHHHhhhhcC-CEEEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEecccchhHHHhcCcccccEE
Q 033251 7 VISCHTVESWNEQLQKGIAAK-KLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTF 84 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~-k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~~~~~~~~~i~~~Pt~ 84 (123)
+..|.+.+++++.+ ... +.+||-|+...-+ .....+.+++..+. +..|....- ..+...+++. .|.+
T Consensus 2 v~~i~s~~ele~f~----~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~~-~~~v 70 (107)
T cd03068 2 SKQLQTLKQVQEFL----RDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---SEIFKSLKVS-PGQL 70 (107)
T ss_pred ceEcCCHHHHHHHH----hcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---HHHHHhcCCC-CCce
Confidence 45677888888877 334 6777777765433 35566778888884 577743332 3666778875 4556
Q ss_pred EEecCCe-------EEEEEccC--CH-HHHHHHHHH
Q 033251 85 VLTKEGK-------VLERIVGA--KK-DELQLAVEK 110 (123)
Q Consensus 85 ~~~~~g~-------~~~~~~g~--~~-~~l~~~l~~ 110 (123)
++++.-+ ....+.|. +. +.|.+||.+
T Consensus 71 vl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 71 VVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred EEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 6662211 11222332 33 448888864
No 253
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=93.92 E-value=1.1 Score=29.23 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=24.8
Q ss_pred cchhHHHhcCcccccEEEEecCCeEEEEEccC-CHH
Q 033251 68 ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKD 102 (123)
Q Consensus 68 ~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~ 102 (123)
-+|.+.++|+|+.+|++++.- +...++..|. +..
T Consensus 150 IDP~lF~~F~I~~VPafVv~C-~~~yD~I~GNIsl~ 184 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFC-SQGYDIIRGNLRVG 184 (212)
T ss_pred ECHHHHHhcCCccccEEEEEc-CCCCCEEEecccHH
Confidence 368889999999999999973 3344566665 543
No 254
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=93.89 E-value=0.21 Score=29.38 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=25.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL 69 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~ 69 (123)
+..|+.++|+.|++....+++. ++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 3467789999999998887763 566667776543
No 255
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=93.83 E-value=0.83 Score=27.41 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=40.7
Q ss_pred hhHHHHHHHhhCCCeEEEEEecccchh----------HHHhcCcccccEEEEecCCeEEEEEccCCHHHHHHHHHHHhcc
Q 033251 45 MSPILSELAKKLPAVIFLKVDVDELKS----------VAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHATT 114 (123)
Q Consensus 45 ~~~~~~~~~~~~~~v~~~~i~~~~~~~----------~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~~ 114 (123)
+...++.+.+ .++.+.+.+...++. +.+.-|...+|.+++ +|+++..-..++.++|.+|+.-....
T Consensus 29 ~a~~~~~Lk~--~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~G~YPt~eEl~~~~~i~~~~ 104 (123)
T PF06953_consen 29 FAADLDWLKE--QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKTGRYPTNEELAEWLGISFSE 104 (123)
T ss_dssp HHHHHHHHHH--TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEESS---HHHHHHHHT--GGG
T ss_pred HHHHHHHHHh--CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEecCCCCHHHHHHHhCCCccc
Confidence 3344445543 389999999987653 344557889998888 88888775455889999998766544
Q ss_pred c
Q 033251 115 V 115 (123)
Q Consensus 115 ~ 115 (123)
.
T Consensus 105 ~ 105 (123)
T PF06953_consen 105 L 105 (123)
T ss_dssp T
T ss_pred c
Confidence 3
No 256
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=93.47 E-value=0.2 Score=31.75 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=24.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCC
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLP 57 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~ 57 (123)
|.+|+.+.||+|....+.+.++.+.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 668889999999999999999999984
No 257
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=93.42 E-value=0.13 Score=29.90 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=24.6
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL 69 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~ 69 (123)
..|+.++|+.|++.+..+++- ++.+-.+|+.+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC
Confidence 468899999999988877654 566666666544
No 258
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=93.32 E-value=1.5 Score=28.71 Aligned_cols=90 Identities=23% Similarity=0.294 Sum_probs=59.7
Q ss_pred hhcCCEEEEEEEcCCCh-hhhhhhHHHHHHHhhCC-----CeEEEEEecccc----------------------------
Q 033251 24 IAAKKLIVVDFTASWCP-PCKLMSPILSELAKKLP-----AVIFLKVDVDEL---------------------------- 69 (123)
Q Consensus 24 ~~~~k~~vv~f~~~~C~-~C~~~~~~~~~~~~~~~-----~v~~~~i~~~~~---------------------------- 69 (123)
..++++++++|.=+.|| .|-.....+..+.+... +++++.|.+|..
T Consensus 64 ~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~ 143 (207)
T COG1999 64 DLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQ 143 (207)
T ss_pred ccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHH
Confidence 35899999999977785 58877777777766654 355555544321
Q ss_pred -hhHHHhcCcc---------------cccE-EEEecCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 70 -KSVAEEWAVE---------------AMPT-FVLTKEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 70 -~~~~~~~~i~---------------~~Pt-~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
.+++++|++. +... +++..+|+....+.+. +++.+.+.|++++.
T Consensus 144 ~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 144 IEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred HHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 1334445443 2332 3334689999988877 68899998888775
No 259
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=93.17 E-value=0.2 Score=29.22 Aligned_cols=57 Identities=12% Similarity=0.308 Sum_probs=38.8
Q ss_pred EEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCccc--ccEEEE-ecCCe
Q 033251 34 FTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEA--MPTFVL-TKEGK 91 (123)
Q Consensus 34 f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~--~Pt~~~-~~~g~ 91 (123)
||..+||.|......+.+.. ....+.++.+.-....++...++++. ..+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD-RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC-CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 79999999999999888882 23357777665555555566777653 444333 56776
No 260
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=92.95 E-value=0.49 Score=29.93 Aligned_cols=44 Identities=32% Similarity=0.443 Sum_probs=31.1
Q ss_pred hcCCEEEEEEEcCCC-hhhhhhhHHHHHHHhhC----CCeEEEEEeccc
Q 033251 25 AAKKLIVVDFTASWC-PPCKLMSPILSELAKKL----PAVIFLKVDVDE 68 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C-~~C~~~~~~~~~~~~~~----~~v~~~~i~~~~ 68 (123)
-+||+++|.|.-..| ..|-.....+.++.+.. .+++++.|.+|.
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 479999999999999 56777766666655543 257777777763
No 261
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=92.74 E-value=0.46 Score=25.09 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=34.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc----chhHHHhcCcccccEEEE
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE----LKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~----~~~~~~~~~i~~~Pt~~~ 86 (123)
..|+.++|+.|++.+-.+++..-. +....++..+ .+++.+......+|+++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 357789999999887777665433 3444455422 255666666778999964
No 262
>PRK12559 transcriptional regulator Spx; Provisional
Probab=92.61 E-value=0.26 Score=29.78 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=22.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD 67 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~ 67 (123)
+..|+.++|+.|++....+++. ++.+-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEee
Confidence 4578899999999988766553 5555555553
No 263
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=1.6 Score=31.31 Aligned_cols=81 Identities=16% Similarity=0.277 Sum_probs=63.0
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHHHH
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDEL 104 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l 104 (123)
.+..-+=-|++-.|..|-.....++-++-..|++.-..||..-.++=.+.-+|-++|++.+ ||+.... |. +.+++
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~fg~--GRmtleei 190 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEFGQ--GRMTLEEI 190 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cchhhcc--cceeHHHH
Confidence 5667777788999999999999999999888999999999876666678889999999877 5655443 33 56666
Q ss_pred HHHHHH
Q 033251 105 QLAVEK 110 (123)
Q Consensus 105 ~~~l~~ 110 (123)
...|..
T Consensus 191 laki~~ 196 (520)
T COG3634 191 LAKIDT 196 (520)
T ss_pred HHHhcC
Confidence 655543
No 264
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=91.95 E-value=1.1 Score=23.89 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=45.5
Q ss_pred EEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc-chhHHHhcCcccccEEEEecCCeEEEEEccCCHHHHHHHHHHHh
Q 033251 34 FTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE-LKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHA 112 (123)
Q Consensus 34 f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~-~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~ 112 (123)
++.++|++|++.+=.++...- .+.+..++..+ ...+.+...-..+|++. . +|..+. +...|.++|++..
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~-~-~g~~l~-----dS~~I~~yL~~~~ 71 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV-D-DGEVLT-----DSAAIIEYLEERY 71 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE-E-TTEEEE-----SHHHHHHHHHHHS
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE-E-CCEEEe-----CHHHHHHHHHHHc
Confidence 667999999998877665432 24445555444 34556666777899998 3 465333 4567777777665
Q ss_pred c
Q 033251 113 T 113 (123)
Q Consensus 113 ~ 113 (123)
+
T Consensus 72 ~ 72 (75)
T PF13417_consen 72 P 72 (75)
T ss_dssp T
T ss_pred C
Confidence 4
No 265
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=91.80 E-value=1.4 Score=26.90 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=49.0
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccc-c-EEEEecCCeEEEE
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAM-P-TFVLTKEGKVLER 95 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~-P-t~~~~~~g~~~~~ 95 (123)
-+++-.+.+|...|+.|......+.+.-.. ..+.|..+..+....+....++.-. + ++++.++|+....
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~-~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~ 75 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQG-GRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVG 75 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhccC-CcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEec
Confidence 456777889999999999955544433221 2589999988888888888887653 3 5777777766543
No 266
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=91.75 E-value=0.31 Score=31.18 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=24.9
Q ss_pred hHHHhcCcccccEEEEecCCeEEEEEccC-CHHHHHHHH
Q 033251 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAV 108 (123)
Q Consensus 71 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l 108 (123)
..+.+.|+.++|++++ +|+. ...|. +.+.+.+.|
T Consensus 166 ~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 166 ARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHh
Confidence 4466789999999999 5543 35677 778887765
No 267
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=91.69 E-value=0.27 Score=25.93 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=32.5
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc-hhHHHhcCcccccEEE
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL-KSVAEEWAVEAMPTFV 85 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~-~~~~~~~~i~~~Pt~~ 85 (123)
..|+.++|+.|++.+-.++...-. .....++.... +++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 356788999999998777555333 33334444432 4555555677899775
No 268
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=91.05 E-value=1.1 Score=24.85 Aligned_cols=52 Identities=10% Similarity=0.218 Sum_probs=33.5
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc-hhHHHhcCcccccEEEE
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL-KSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~-~~~~~~~~i~~~Pt~~~ 86 (123)
..|+.+.|++|++.+-.+....-. +.+..++.... ..+.+......+|++..
T Consensus 20 ~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 20 RLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 346678899999887766664332 34445554433 33555566778999876
No 269
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=90.46 E-value=2.3 Score=24.93 Aligned_cols=97 Identities=15% Similarity=0.211 Sum_probs=68.3
Q ss_pred hhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC---CeEEEEEecccchhHHH----hcCcc-cccEE
Q 033251 13 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDELKSVAE----EWAVE-AMPTF 84 (123)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~---~v~~~~i~~~~~~~~~~----~~~i~-~~Pt~ 84 (123)
.+++.+.-.. .-+..-++.|-..-.+.-..|++.+.++++.+. ++.++-||-+..|-+.. .|+|. +-|.+
T Consensus 8 ~~~m~e~wed--d~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqI 85 (120)
T cd03074 8 PENMFETWED--DLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQI 85 (120)
T ss_pred HHHHHHhhhc--ccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCce
Confidence 4555555544 345677888999999999999999999999985 59999999999987654 34543 25876
Q ss_pred EEe--cCCeEEE-EEc---c-CCHHHHHHHHHHH
Q 033251 85 VLT--KEGKVLE-RIV---G-AKKDELQLAVEKH 111 (123)
Q Consensus 85 ~~~--~~g~~~~-~~~---g-~~~~~l~~~l~~~ 111 (123)
-+. .+...+. ... . .+.++|..||+..
T Consensus 86 GVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 86 GVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred eeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 555 2333332 221 2 2578999999865
No 270
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=90.27 E-value=0.64 Score=28.16 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=22.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD 67 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~ 67 (123)
+..|+.++|+.|++.+..+++- ++.+-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECC
Confidence 3467789999999987666543 5666666664
No 271
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=90.13 E-value=2.2 Score=24.08 Aligned_cols=69 Identities=19% Similarity=0.349 Sum_probs=39.6
Q ss_pred CCChhhhhhhHHH-------HHHHhhCCC--eEEEEEecccch------hHHHhcC--cccccEEEEecCCeEEEEEccC
Q 033251 37 SWCPPCKLMSPIL-------SELAKKLPA--VIFLKVDVDELK------SVAEEWA--VEAMPTFVLTKEGKVLERIVGA 99 (123)
Q Consensus 37 ~~C~~C~~~~~~~-------~~~~~~~~~--v~~~~i~~~~~~------~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~ 99 (123)
.-|+.|..+-..- ..+.++||+ +.+.+||+...+ .++++.. --..|.+++ +|+.+.. |.
T Consensus 7 ~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~E--Gn 82 (93)
T PF07315_consen 7 VICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVAE--GN 82 (93)
T ss_dssp S--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEEE--SS
T ss_pred ccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEec--CC
Confidence 4799998764322 345788885 899999997543 3344432 235888777 7777765 66
Q ss_pred -CHHHHHHHHH
Q 033251 100 -KKDELQLAVE 109 (123)
Q Consensus 100 -~~~~l~~~l~ 109 (123)
....+-++++
T Consensus 83 p~LK~I~~~~e 93 (93)
T PF07315_consen 83 PQLKDIYEEME 93 (93)
T ss_dssp --HHHHHHHHH
T ss_pred ccHHHHHHhhC
Confidence 5666666553
No 272
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=89.94 E-value=0.55 Score=29.71 Aligned_cols=33 Identities=33% Similarity=0.454 Sum_probs=23.2
Q ss_pred hHHHhcCcccccEEEEecCCeEEEEEccC-CHHHHHHHH
Q 033251 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAV 108 (123)
Q Consensus 71 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l 108 (123)
..+.++||.++|++++ +|+ .+.|. ..+.+...|
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 4467789999999999 565 44577 466665544
No 273
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=89.68 E-value=2.2 Score=24.97 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=36.3
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEeccc
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDE 68 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~ 68 (123)
.+||+++|.=.++.|+.-. --..++++.++|. ++.+...-+++
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 5899999999999999988 5568899999987 68888887754
No 274
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=89.67 E-value=3.1 Score=25.21 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=52.2
Q ss_pred CcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhh-hhhHHHHHHHhh--CCCeEEEEE----ecccchhHHHhcC
Q 033251 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCK-LMSPILSELAKK--LPAVIFLKV----DVDELKSVAEEWA 77 (123)
Q Consensus 5 ~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~-~~~~~~~~~~~~--~~~v~~~~i----~~~~~~~~~~~~~ 77 (123)
..+.++.+.++.++.+.. +....+| +..+-|+=-. ..+|-....... .|+ .++.+ |.+.... ++.|=
T Consensus 16 ~Gf~eL~T~e~Vd~~~~~---~~GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkPD-~lvTVFAGqDkEAt~~-aR~yf 89 (136)
T PF06491_consen 16 AGFEELTTAEEVDEALKN---KEGTTLV-VVNSVCGCAAGNARPAAAMALQNDKKPD-HLVTVFAGQDKEATAK-AREYF 89 (136)
T ss_dssp TT-EE--SHHHHHHHHHH-----SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS--S-EEEEEETTTSHHHHHH-HHHTS
T ss_pred cCccccCCHHHHHHHHhC---CCCcEEE-EEeccccccccccCHHHHHHHhCCCCCC-ceEEeccCCCHHHHHH-HHHhc
Confidence 456788899999998852 3334443 4456664222 446766555443 233 33333 3333333 33332
Q ss_pred ---cccccEEEEecCCeEEEEEc-----cCCHHHHHHHHHHHh
Q 033251 78 ---VEAMPTFVLTKEGKVLERIV-----GAKKDELQLAVEKHA 112 (123)
Q Consensus 78 ---i~~~Pt~~~~~~g~~~~~~~-----g~~~~~l~~~l~~~~ 112 (123)
-.+-|++.+|++|++++-.. |.+.+.|...|....
T Consensus 90 ~~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 90 EPYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp TTS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHH
T ss_pred CCCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHH
Confidence 34678999999999998544 445666666665543
No 275
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=89.33 E-value=3.1 Score=24.65 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=51.4
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEec-ccc-----------hhHHHhcCccccc--EEEEecC
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDV-DEL-----------KSVAEEWAVEAMP--TFVLTKE 89 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~-~~~-----------~~~~~~~~i~~~P--t~~~~~~ 89 (123)
+++++||.-=+...+.-+.....+++-...+. ++.++.+-- ... ..+.++|++..-. .+++-++
T Consensus 9 ~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKD 88 (118)
T PF13778_consen 9 KNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKD 88 (118)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCC
Confidence 44444432223344444444555555333333 466666622 222 2678889866433 4666689
Q ss_pred CeEEEEEccC-CHHHHHHHHHHH
Q 033251 90 GKVLERIVGA-KKDELQLAVEKH 111 (123)
Q Consensus 90 g~~~~~~~g~-~~~~l~~~l~~~ 111 (123)
|.+..++... +.+.|-..|+.+
T Consensus 89 G~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 89 GGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred CcEEEecCCCCCHHHHHHHHhCC
Confidence 9999998888 899999988865
No 276
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=87.52 E-value=5.2 Score=25.13 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=57.3
Q ss_pred hhcCCEEEEEEEcCCChhhhhhhHHHHHHHhh-CCC---eEEEEEeccc-----------------------------ch
Q 033251 24 IAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPA---VIFLKVDVDE-----------------------------LK 70 (123)
Q Consensus 24 ~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~-~~~---v~~~~i~~~~-----------------------------~~ 70 (123)
...||+-+|...+-....-..-.|.++.+.+. ++. -..-.||.+. +.
T Consensus 34 ~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G 113 (160)
T PF09695_consen 34 QLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNG 113 (160)
T ss_pred ccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCC
Confidence 35788888888877666767778888888776 553 2333445532 12
Q ss_pred hHHHhcCccccc--EEEEecCCeEEEEEccC-CHHHHHHHHHHH
Q 033251 71 SVAEEWAVEAMP--TFVLTKEGKVLERIVGA-KKDELQLAVEKH 111 (123)
Q Consensus 71 ~~~~~~~i~~~P--t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 111 (123)
.+...|++..-- .+++.++|++.....|. +++++.+.|.-+
T Consensus 114 ~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 114 VVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIALL 157 (160)
T ss_pred ceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHHH
Confidence 223344443322 35555899999999999 888888877643
No 277
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=87.12 E-value=1.2 Score=26.14 Aligned_cols=75 Identities=15% Similarity=0.280 Sum_probs=49.8
Q ss_pred CChhhhhhhHHHHHHHhhCCCeEEEEEecccch-hHHHhcC--cccccEEEEecCCeEE---EEEccC----CHHHHHHH
Q 033251 38 WCPPCKLMSPILSELAKKLPAVIFLKVDVDELK-SVAEEWA--VEAMPTFVLTKEGKVL---ERIVGA----KKDELQLA 107 (123)
Q Consensus 38 ~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~-~~~~~~~--i~~~Pt~~~~~~g~~~---~~~~g~----~~~~l~~~ 107 (123)
.|++|..+...+...-..-..+.+.+|+...-+ .+....| -++.|++++-.+.... ..+.|. +++.|...
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 599999988877666555556999999998764 4456666 4689999987543111 122222 46777777
Q ss_pred HHHHh
Q 033251 108 VEKHA 112 (123)
Q Consensus 108 l~~~~ 112 (123)
|.+..
T Consensus 103 La~r~ 107 (112)
T PF11287_consen 103 LAERH 107 (112)
T ss_pred HHHHc
Confidence 76554
No 278
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=85.43 E-value=5.1 Score=28.51 Aligned_cols=85 Identities=12% Similarity=0.160 Sum_probs=53.4
Q ss_pred cCCEEEEEEEcCCChhhhh-hhHHHHHHHhhCCC----eEEEEEecc-cc--hhHHHhcCccccc-EEEEecCCeEEEEE
Q 033251 26 AKKLIVVDFTASWCPPCKL-MSPILSELAKKLPA----VIFLKVDVD-EL--KSVAEEWAVEAMP-TFVLTKEGKVLERI 96 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~-~~~~~~~~~~~~~~----v~~~~i~~~-~~--~~~~~~~~i~~~P-t~~~~~~g~~~~~~ 96 (123)
+..+.++-. |.|+.|.. ......++.+.+.+ +++..+-|- +. ..-..++||.+-+ ..++|.+|+.+.+.
T Consensus 263 ~~g~~IisC--PgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv 340 (360)
T PRK00366 263 SRGPEVISC--PTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTL 340 (360)
T ss_pred cCCCeEEEC--CCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeee
Confidence 344444333 45666653 34555666666653 677777663 22 2235778888766 58899999999987
Q ss_pred ccCC-HHHHHHHHHHHh
Q 033251 97 VGAK-KDELQLAVEKHA 112 (123)
Q Consensus 97 ~g~~-~~~l~~~l~~~~ 112 (123)
.+.. .+.|.+.|+++.
T Consensus 341 ~~~~~~~~l~~~i~~~~ 357 (360)
T PRK00366 341 PEENIVEELEAEIEAYA 357 (360)
T ss_pred ChHhHHHHHHHHHHHHH
Confidence 7663 566666666553
No 279
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=84.87 E-value=6.7 Score=25.85 Aligned_cols=75 Identities=21% Similarity=0.393 Sum_probs=49.0
Q ss_pred hcCCEEEEEEE-----cCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccc---------------------hhHHHhc
Q 033251 25 AAKKLIVVDFT-----ASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDEL---------------------KSVAEEW 76 (123)
Q Consensus 25 ~~~k~~vv~f~-----~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~---------------------~~~~~~~ 76 (123)
...+.+|..|. ...|+.|-.+...+........ ++.|+.|.-..- ..+..+|
T Consensus 66 Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~gs~Fn~D~ 145 (211)
T PF05988_consen 66 GRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYGSDFNYDF 145 (211)
T ss_pred CCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCCCcccccc
Confidence 46667777777 6799999999999954444433 588888876432 2344455
Q ss_pred Cc-----ccccEEEEe--cCCeEEEEEccC
Q 033251 77 AV-----EAMPTFVLT--KEGKVLERIVGA 99 (123)
Q Consensus 77 ~i-----~~~Pt~~~~--~~g~~~~~~~g~ 99 (123)
++ ...|.+-+| .+|++...+...
T Consensus 146 ~~~~~~~~~~~g~svF~Rdg~~VfhTyst~ 175 (211)
T PF05988_consen 146 GVSFDEGGEMPGLSVFLRDGGRVFHTYSTY 175 (211)
T ss_pred cceeccCCCceeEEEEEEcCCEEEEEeecC
Confidence 65 457765555 456777666654
No 280
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=84.71 E-value=3.3 Score=21.51 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=34.1
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc----chhHHHhcCcccccEEEEecCCeEE
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE----LKSVAEEWAVEAMPTFVLTKEGKVL 93 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~----~~~~~~~~~i~~~Pt~~~~~~g~~~ 93 (123)
.|+.+.|+.|.+.+-.++...-. .....++... ...+.+......+|++.. +|..+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 46788999999887777665333 3344444322 234444455668999875 35443
No 281
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=84.57 E-value=9.3 Score=25.24 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=47.9
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHh-cCcccccEEEEecCCeEEEEEccCCHHHHHHHHHHHhccc
Q 033251 37 SWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEE-WAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHATTV 115 (123)
Q Consensus 37 ~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~-~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~~~ 115 (123)
-.|+.|+++.-.+. .......+-.||....++-... ..-...|.+.+.... -.+.+.+.++|++.++..
T Consensus 19 Gdcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~-------~tDs~~Ie~~Lee~l~~p 88 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKW-------VTDSDKIEEFLEEKLPPP 88 (221)
T ss_pred CCChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCce-------eccHHHHHHHHHHhcCCC
Confidence 46899998877766 3323578888999887766544 456677877764421 226788899998887654
Q ss_pred c
Q 033251 116 E 116 (123)
Q Consensus 116 ~ 116 (123)
.
T Consensus 89 ~ 89 (221)
T KOG1422|consen 89 K 89 (221)
T ss_pred C
Confidence 3
No 282
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=84.31 E-value=1.5 Score=28.45 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=23.5
Q ss_pred HHhcCcccccEEEEecCCeEEEEEccCC-HHHHHHHH
Q 033251 73 AEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAV 108 (123)
Q Consensus 73 ~~~~~i~~~Pt~~~~~~g~~~~~~~g~~-~~~l~~~l 108 (123)
+.+.|+.++|++++-.++..-..+.|.+ .+.+.+.|
T Consensus 172 A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 172 ALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 4567999999999975322223666774 56665554
No 283
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=84.06 E-value=6.9 Score=25.90 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=48.3
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHHHHHHHH
Q 033251 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAV 108 (123)
Q Consensus 30 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l 108 (123)
-+=.|...+|..|..+...+++-. -.+++++ ++....+-.+-+-+|-++|.+++ +|+.+.. ++ ++++++..+
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkg-ll~~Vki--i~a~~p~f~~~~~~V~SvP~Vf~--DGel~~~--dpVdp~~ies~~ 84 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKG-LLGKVKI--IDAELPPFLAFEKGVISVPSVFI--DGELVYA--DPVDPEEIESIL 84 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcC-CCCCceE--EEcCCChHHHhhcceeecceEEE--cCeEEEc--CCCCHHHHHHHH
Confidence 344566789999998776665411 1234544 45555555566667889999876 6766653 55 788888877
Q ss_pred HH
Q 033251 109 EK 110 (123)
Q Consensus 109 ~~ 110 (123)
+-
T Consensus 85 ~G 86 (265)
T COG5494 85 SG 86 (265)
T ss_pred cC
Confidence 64
No 284
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=84.05 E-value=11 Score=25.54 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=38.5
Q ss_pred HHHHHhhhhcCCEEEEEEEcC-----CChhhhhhhHHHHHHHhhCC-CeEEEEEecccchhHHHh----cCccc
Q 033251 17 NEQLQKGIAAKKLIVVDFTAS-----WCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEE----WAVEA 80 (123)
Q Consensus 17 ~~~~~~~~~~~k~~vv~f~~~-----~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~~~~~~~~~~----~~i~~ 80 (123)
.+.+.. -.+.+.|..|++. .-+.-..+...++++...-+ ++.+-.+|.+.++...++ +|+..
T Consensus 17 ~~~L~~--L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 17 KKVLKS--LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred HHHHHh--CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 444543 2445555555555 23444455555666666666 699999999777666555 78766
No 285
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=83.59 E-value=1.6 Score=27.60 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=17.1
Q ss_pred hHHHhcCcccccEEEEecCCe
Q 033251 71 SVAEEWAVEAMPTFVLTKEGK 91 (123)
Q Consensus 71 ~~~~~~~i~~~Pt~~~~~~g~ 91 (123)
..+.++||.++|++++..++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 445678999999999997765
No 286
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=82.95 E-value=5 Score=21.30 Aligned_cols=57 Identities=7% Similarity=0.034 Sum_probs=34.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc----cchhHHHhcCcccccEEEEecCCeEE
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD----ELKSVAEEWAVEAMPTFVLTKEGKVL 93 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~----~~~~~~~~~~i~~~Pt~~~~~~g~~~ 93 (123)
..|+.+.|+.|++.+-.+.+..- ...+..++.. ..+++.+-.....+|+++. +|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEE
Confidence 35677889999888755554433 2445555542 2344555566778999863 56543
No 287
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=82.49 E-value=2.7 Score=26.53 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=25.7
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEE
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLP-AVIFLKV 64 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i 64 (123)
+|+..-||+|....+.++++...++ .+.+..+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 5778899999999999999998886 3454444
No 288
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=80.63 E-value=3.7 Score=26.17 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.6
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCC
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLP 57 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~ 57 (123)
+|+..-||+|....+.+.++.+.++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 5778899999999999999999984
No 289
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=79.48 E-value=3 Score=24.51 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=22.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD 67 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~ 67 (123)
+..|..+.|+.|++.+..+++- ++.+-.+|+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehh
Confidence 3467789999999988766554 4555555553
No 290
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=78.65 E-value=3.5 Score=24.17 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=23.8
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE 68 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~ 68 (123)
..|+.+.|+.|++.+..+++. ++.+..+|+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccC
Confidence 467889999999998877763 56666666643
No 291
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=77.84 E-value=4.3 Score=28.73 Aligned_cols=55 Identities=11% Similarity=0.274 Sum_probs=43.6
Q ss_pred eEEEEEecccchhHHHhcCcccccEEEEe--cCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 59 VIFLKVDVDELKSVAEEWAVEAMPTFVLT--KEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 59 v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~--~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
+-++..|..+...+..-|.+..+|.+.++ ..|+.+.++.|. .++++..-+++.+.
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 56667788888888889999999987777 479999999888 67777666666653
No 292
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=77.07 E-value=4.9 Score=28.63 Aligned_cols=84 Identities=14% Similarity=0.236 Sum_probs=47.3
Q ss_pred cCCEEEEEEEcCCChhhh-hhhHHHHHHHhhCC----CeEEEEEecccc--hhH-HHhcCcc-ccc-EEEEecCCeEEEE
Q 033251 26 AKKLIVVDFTASWCPPCK-LMSPILSELAKKLP----AVIFLKVDVDEL--KSV-AEEWAVE-AMP-TFVLTKEGKVLER 95 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~-~~~~~~~~~~~~~~----~v~~~~i~~~~~--~~~-~~~~~i~-~~P-t~~~~~~g~~~~~ 95 (123)
..++-++-. |.|+-|. .+....+++.+... ++++..+-|-=| .+. -.+||+. +-| ...+|++|+.+.+
T Consensus 263 ~~g~~~ISC--PtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k 340 (359)
T PF04551_consen 263 KRGPEIISC--PTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKK 340 (359)
T ss_dssp -SS-EEEE------TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEE
T ss_pred cCCceeeeC--CCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEe
Confidence 444544322 4444443 23444455655554 488888877422 121 2567887 566 4999999999999
Q ss_pred E-ccCC-HHHHHHHHHHH
Q 033251 96 I-VGAK-KDELQLAVEKH 111 (123)
Q Consensus 96 ~-~g~~-~~~l~~~l~~~ 111 (123)
. .... .+.|.+.|+++
T Consensus 341 ~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 341 VIPEEEIVDELIELIEEH 358 (359)
T ss_dssp E-CSTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhh
Confidence 8 5554 68888888765
No 293
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=76.34 E-value=12 Score=24.15 Aligned_cols=60 Identities=12% Similarity=0.240 Sum_probs=45.3
Q ss_pred hhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcC-----cccccEEEEe-cCCeEEEEEccC
Q 033251 40 PPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWA-----VEAMPTFVLT-KEGKVLERIVGA 99 (123)
Q Consensus 40 ~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~-----i~~~Pt~~~~-~~g~~~~~~~g~ 99 (123)
+.-..|...|+.+....+.++++.|.|.....+.+.+. +...|...++ -+|+++....|.
T Consensus 18 gr~~~F~~lw~~l~~~~~~Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG~ 83 (183)
T PF12617_consen 18 GRLAAFERLWQALAPSVPQLKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIGD 83 (183)
T ss_pred CccHHHHHHHHHHHhhhhhccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCCC
Confidence 34467888888888888889999999988776655443 4557776666 489998877777
No 294
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=75.86 E-value=4.7 Score=23.52 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=22.7
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE 68 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~ 68 (123)
..|+.+.|+.|++....+++. ++.+..+|+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccc
Confidence 467889999999987666543 55566666643
No 295
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.05 E-value=20 Score=23.94 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=45.4
Q ss_pred HHHHHHhhhhcCCEEEEEEEc---CCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCc-ccccE-EEEecCC
Q 033251 16 WNEQLQKGIAAKKLIVVDFTA---SWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAV-EAMPT-FVLTKEG 90 (123)
Q Consensus 16 ~~~~~~~~~~~~k~~vv~f~~---~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i-~~~Pt-~~~~~~g 90 (123)
+++.+.......++++.+-.. |.|+.+++....++.. |+.|...|+-.+.++.+.... ...|| --+|-+|
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~G 202 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKG 202 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECC
Confidence 555555543444444433333 5677777766666543 677889999888888766653 45776 4555577
Q ss_pred eEEE
Q 033251 91 KVLE 94 (123)
Q Consensus 91 ~~~~ 94 (123)
+.+.
T Consensus 203 EFiG 206 (227)
T KOG0911|consen 203 EFIG 206 (227)
T ss_pred Eecc
Confidence 5544
No 296
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=74.15 E-value=8.7 Score=24.91 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=27.6
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEec
Q 033251 30 IVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDV 66 (123)
Q Consensus 30 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~~ 66 (123)
.|-+|+..-||+|.-....++++...++ .+.+..+.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 3446778899999999999999887654 355555544
No 297
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=74.07 E-value=21 Score=25.45 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=50.3
Q ss_pred CChhhhhh----hHHHHHHHhhCC----CeEEEEEecccc---hhHHHhcCccc--ccEEEEecCCeEEEEEccCC-HHH
Q 033251 38 WCPPCKLM----SPILSELAKKLP----AVIFLKVDVDEL---KSVAEEWAVEA--MPTFVLTKEGKVLERIVGAK-KDE 103 (123)
Q Consensus 38 ~C~~C~~~----~~~~~~~~~~~~----~v~~~~i~~~~~---~~~~~~~~i~~--~Pt~~~~~~g~~~~~~~g~~-~~~ 103 (123)
-||.|-+. ...++++.+.+. .+.+..+-|-=| ...-.++|+.+ .|...+|.+|+.+.+..+.+ .++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 47777644 344455555543 255555544211 12235677654 67899999999999988875 788
Q ss_pred HHHHHHHHhccc
Q 033251 104 LQLAVEKHATTV 115 (123)
Q Consensus 104 l~~~l~~~~~~~ 115 (123)
|...++++....
T Consensus 343 l~~~i~~~~~~~ 354 (361)
T COG0821 343 LEALIEAYAEER 354 (361)
T ss_pred HHHHHHHHHHHh
Confidence 888888877543
No 298
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=73.79 E-value=11 Score=19.72 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=32.5
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc----cchhHHHhcCcccccEEEE
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD----ELKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~----~~~~~~~~~~i~~~Pt~~~ 86 (123)
-.|+.+.|+.|++.+-.+....-. +....++.. ..+.+.+......+|++..
T Consensus 3 ~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~ 58 (76)
T cd03053 3 KLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALED 58 (76)
T ss_pred EEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEEE
Confidence 345567799999888777665433 344444442 2345556666788998754
No 299
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=73.61 E-value=18 Score=22.03 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=20.1
Q ss_pred cCCChhhhhhhHHHHHHHhhCCCeEEEEEe
Q 033251 36 ASWCPPCKLMSPILSELAKKLPAVIFLKVD 65 (123)
Q Consensus 36 ~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~ 65 (123)
.+-|..|. +.++++...||++.+..++
T Consensus 105 ~~pC~SC~---~vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 105 LPPCESCS---NVIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred CCcChhHH---HHHHHHHHHCCCcEEEEec
Confidence 45677776 5888999999997776543
No 300
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=73.43 E-value=28 Score=24.66 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=54.5
Q ss_pred hcCCEEEEEEEcCCChhhhhh-hHHH-HHHHhhCCCeEEEEEecccchhHHHhcCc--ccccEEEEecCC--eEEEEEcc
Q 033251 25 AAKKLIVVDFTASWCPPCKLM-SPIL-SELAKKLPAVIFLKVDVDELKSVAEEWAV--EAMPTFVLTKEG--KVLERIVG 98 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~-~~~~-~~~~~~~~~v~~~~i~~~~~~~~~~~~~i--~~~Pt~~~~~~g--~~~~~~~g 98 (123)
.+|.|.+|+|+.+..-...+. ...+ .++..+...+.+...|+..-..-...+|- .-.|.+.+..-. -+...+..
T Consensus 225 EEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DLPviaIDsF~Hmylfp~f~d 304 (375)
T KOG0912|consen 225 EEGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDLPVIAIDSFRHMYLFPDFND 304 (375)
T ss_pred hcCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccCcEEEeeccceeeecCchhh
Confidence 689999999998876555433 3333 33333333488888888876655666664 347877776322 12222223
Q ss_pred C-CHHHHHHHHHHHh
Q 033251 99 A-KKDELQLAVEKHA 112 (123)
Q Consensus 99 ~-~~~~l~~~l~~~~ 112 (123)
. .+..|++++..+.
T Consensus 305 i~~pGkLkqFv~DL~ 319 (375)
T KOG0912|consen 305 INIPGKLKQFVADLH 319 (375)
T ss_pred hcCccHHHHHHHHHh
Confidence 3 4678888887664
No 301
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.20 E-value=1.8 Score=27.86 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=35.7
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc-----chhHHHhcCcccccEEEEecCCeEEE
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE-----LKSVAEEWAVEAMPTFVLTKEGKVLE 94 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~-----~~~~~~~~~i~~~Pt~~~~~~g~~~~ 94 (123)
..|+++.-+|.+.|.+=.+..-.++.+ +..+..+|.-+ +.++.+-.....+|++++ +|..+.
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~i-----DYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~ 69 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGI-----DYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLT 69 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCC-----CcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEee
Confidence 568998888999888765554433332 23333333322 123333334678999888 555443
No 302
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=71.71 E-value=29 Score=23.60 Aligned_cols=39 Identities=13% Similarity=0.242 Sum_probs=27.9
Q ss_pred hHHHhcCcccccE---EEEecCCeEEEEEccC-CHHHHHHHHH
Q 033251 71 SVAEEWAVEAMPT---FVLTKEGKVLERIVGA-KKDELQLAVE 109 (123)
Q Consensus 71 ~~~~~~~i~~~Pt---~~~~~~g~~~~~~~g~-~~~~l~~~l~ 109 (123)
.+.+.+++...-+ +++..+|++.+.-.|. +++++..+.+
T Consensus 205 ~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 205 DIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred HHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 5667788877554 5555789999998888 6777766543
No 303
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=71.02 E-value=11 Score=19.66 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=32.9
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc-chhHHHhcCcccccEEEEecCCe
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE-LKSVAEEWAVEAMPTFVLTKEGK 91 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~-~~~~~~~~~i~~~Pt~~~~~~g~ 91 (123)
.|+.+.|+.|.+.+-.+....... .+....++... .+++.+......+|+++.. +|.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~-~g~ 60 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVLD-DGE 60 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEEC-CCC
Confidence 456788999998776665521111 24444454332 3455555567779987653 443
No 304
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=70.15 E-value=22 Score=22.88 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=37.2
Q ss_pred CCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc-hhHHHhcCcccccEEEEecCCeE
Q 033251 27 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL-KSVAEEWAVEAMPTFVLTKEGKV 92 (123)
Q Consensus 27 ~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~-~~~~~~~~i~~~Pt~~~~~~g~~ 92 (123)
++..+-.|+.+.|+.|.+.+=.+++..- .+.+..+|.... +++.+-.....+|+++. +|..
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~--~g~~ 68 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPYQSVPTLVD--RELT 68 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 3344555556789999998876665432 244555665433 35555556778999863 4543
No 305
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=69.80 E-value=14 Score=19.27 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=30.2
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc-chhHHHhcCc-ccccEEEE
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE-LKSVAEEWAV-EAMPTFVL 86 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~-~~~~~~~~~i-~~~Pt~~~ 86 (123)
.++.+.|++|.+.+-.+....-. .....++... .+++.+.... ..+|++..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~ 55 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP---YEYVEEDLGNKSELLLASNPVHKKIPVLLH 55 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC---CEEEEeCcccCCHHHHHhCCCCCCCCEEEE
Confidence 45567899999988777665433 3333444432 2333333333 68998864
No 306
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=69.07 E-value=6.5 Score=25.73 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=18.8
Q ss_pred ccchhHHHhcCcccccEEEEecC
Q 033251 67 DELKSVAEEWAVEAMPTFVLTKE 89 (123)
Q Consensus 67 ~~~~~~~~~~~i~~~Pt~~~~~~ 89 (123)
+....+.++|+|+++|+++.-.+
T Consensus 172 dQ~g~Lt~rF~I~~VPavV~q~g 194 (202)
T TIGR02743 172 DQHGKLTQKFGIKHVPARVSQEG 194 (202)
T ss_pred cCCchHhhccCceeeceEEEecC
Confidence 55678899999999999987443
No 307
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=66.52 E-value=21 Score=20.12 Aligned_cols=45 Identities=9% Similarity=0.012 Sum_probs=25.6
Q ss_pred HHHHHHhhCCCeEEEEEecccchhHHHhc----C----cccccEEEEecCCeEEEE
Q 033251 48 ILSELAKKLPAVIFLKVDVDELKSVAEEW----A----VEAMPTFVLTKEGKVLER 95 (123)
Q Consensus 48 ~~~~~~~~~~~v~~~~i~~~~~~~~~~~~----~----i~~~Pt~~~~~~g~~~~~ 95 (123)
.+..+.+. .++.|-.+|++.+++..+.+ + -..+|.+++ +++.+..
T Consensus 21 ~v~~lL~~-k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg 73 (92)
T cd03030 21 EVLGFLEA-KKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYCGD 73 (92)
T ss_pred HHHHHHHH-CCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeC
Confidence 33444444 37999999998776554332 2 245566554 5555543
No 308
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=66.45 E-value=32 Score=22.09 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=37.9
Q ss_pred hcCCEEEEEEE-cCCChhhh----hhhHHHHHHHhhCCCeEEEEEec---------------------ccchhHHHhcCc
Q 033251 25 AAKKLIVVDFT-ASWCPPCK----LMSPILSELAKKLPAVIFLKVDV---------------------DELKSVAEEWAV 78 (123)
Q Consensus 25 ~~~k~~vv~f~-~~~C~~C~----~~~~~~~~~~~~~~~v~~~~i~~---------------------~~~~~~~~~~~i 78 (123)
..++++|++|| +..-|.|- .|+..++++...+ ..++.+.. |...++...+|.
T Consensus 88 t~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa 165 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKDLGA 165 (211)
T ss_pred cCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHHhCC
Confidence 35669999999 33445554 3566677776653 33333333 234577888887
Q ss_pred cccc--------EEEEecCC
Q 033251 79 EAMP--------TFVLTKEG 90 (123)
Q Consensus 79 ~~~P--------t~~~~~~g 90 (123)
...| ++++.++|
T Consensus 166 ~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 166 PKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred CCCCCCCcccceEEEEecCC
Confidence 7644 35665554
No 309
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=66.35 E-value=15 Score=21.20 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc
Q 033251 34 FTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL 69 (123)
Q Consensus 34 f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~ 69 (123)
|+.+.|..|++....+++ .++.+-.+|..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~-----~gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-----NGIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-----TT--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHH-----cCCCeEeehhhhC
Confidence 567899999999887775 3677777888654
No 310
>PRK10853 putative reductase; Provisional
Probab=66.15 E-value=9.8 Score=22.53 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=22.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD 67 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~ 67 (123)
+..|+.+.|..|++.+.-+++- ++.+-.+|.-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehc
Confidence 3467789999999998877653 5555666653
No 311
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=66.15 E-value=6.1 Score=23.43 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=19.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhh
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKK 55 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~ 55 (123)
+..|+.+.|..|+..+.-+++..-.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~ 27 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIE 27 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCC
Confidence 4567789999999998877665433
No 312
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=65.93 E-value=11 Score=24.91 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=20.9
Q ss_pred ccchhHHHhcCcccccEEEEe-cCCeEEE
Q 033251 67 DELKSVAEEWAVEAMPTFVLT-KEGKVLE 94 (123)
Q Consensus 67 ~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~ 94 (123)
+....+.++|+|+++|+++.- ..|+.+.
T Consensus 170 dQ~G~Lt~rF~I~~VPAvV~~~q~G~~l~ 198 (209)
T PRK13738 170 DQNGVLCQRFGIDQVPARVSAVPGGRFLK 198 (209)
T ss_pred cCcchHHHhcCCeeeceEEEEcCCCCEEE
Confidence 455678999999999998872 4555444
No 313
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=65.45 E-value=27 Score=22.87 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=25.8
Q ss_pred CCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEec
Q 033251 27 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV 66 (123)
Q Consensus 27 ~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~ 66 (123)
..--+.+|....|+.|......+.. ....+.++-|+-
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a---~~~~~Diylvgs 144 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLA---DNAPLDLYLVGS 144 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhc---CCCceeEEEecC
Confidence 4455667888999999988776633 333577777773
No 314
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=65.32 E-value=16 Score=19.16 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=32.1
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc---cchhHHHhcCcccccEEEEe
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD---ELKSVAEEWAVEAMPTFVLT 87 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~---~~~~~~~~~~i~~~Pt~~~~ 87 (123)
.|+.+.|+.|.+.+-.++...- .+.+..++.. ..+++.+......+|++...
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~ 57 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA 57 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCCCCCCEEEcC
Confidence 3566778888877766664421 2455555553 23455555567789999764
No 315
>COG3411 Ferredoxin [Energy production and conversion]
Probab=64.56 E-value=19 Score=18.95 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=24.1
Q ss_pred ccEEEEecCCeEEEEEccCCHHHHHHHHHHHhcc
Q 033251 81 MPTFVLTKEGKVLERIVGAKKDELQLAVEKHATT 114 (123)
Q Consensus 81 ~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~~ 114 (123)
=|+++++.+| .-+.+.+++...+.+++++..
T Consensus 17 gPvl~vYpeg---vWY~~V~p~~a~rIv~~hl~~ 47 (64)
T COG3411 17 GPVLVVYPEG---VWYTRVDPEDARRIVQSHLLG 47 (64)
T ss_pred CCEEEEecCC---eeEeccCHHHHHHHHHHHHhC
Confidence 5899999988 233455899999999998863
No 316
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=63.36 E-value=22 Score=19.58 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=23.5
Q ss_pred ccEEEEecCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 81 MPTFVLTKEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 81 ~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
-.++.+|..|+.+-. |. +.+++++.+++..+
T Consensus 49 ~~t~~IF~sGki~it--Gaks~~~~~~a~~~i~~ 80 (86)
T PF00352_consen 49 KATVLIFSSGKIVIT--GAKSEEEAKKAIEKILP 80 (86)
T ss_dssp TEEEEEETTSEEEEE--EESSHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 457999999998876 66 77777777776654
No 317
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=62.64 E-value=17 Score=20.91 Aligned_cols=68 Identities=9% Similarity=-0.005 Sum_probs=34.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEecccchhHHHhcC--c--------ccccE-EEEecCCeEEEEEcc
Q 033251 32 VDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVDVDELKSVAEEWA--V--------EAMPT-FVLTKEGKVLERIVG 98 (123)
Q Consensus 32 v~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~~~~~~~~~~~--i--------~~~Pt-~~~~~~g~~~~~~~g 98 (123)
|.+|.+.+......+..-+++..-+. +|.|-.+|+..+.+..+.+. . .+.|- -.+|.+++....+..
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~ 82 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYED 82 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHH
Confidence 44455555666777666666655543 69999999987655433222 1 22222 245557776666544
Q ss_pred C
Q 033251 99 A 99 (123)
Q Consensus 99 ~ 99 (123)
.
T Consensus 83 f 83 (99)
T PF04908_consen 83 F 83 (99)
T ss_dssp H
T ss_pred H
Confidence 4
No 318
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=60.54 E-value=48 Score=22.14 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=24.6
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
..+.+.+++.+.+.++...++|.||.+..+
T Consensus 171 ~~v~~~~el~~al~~a~~~~gP~lIev~~~ 200 (235)
T cd03376 171 ASVAYPEDLYKKVKKALSIEGPAYIHILSP 200 (235)
T ss_pred EcCCCHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 357788899999988888888999888765
No 319
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=60.37 E-value=19 Score=21.63 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=21.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEec
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV 66 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~ 66 (123)
+..|+-+.|..|++.+..+++- ++.+-.+|+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~ 33 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-----GHDVEVQDI 33 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEec
Confidence 4467789999999988777654 444445554
No 320
>PRK10026 arsenate reductase; Provisional
Probab=60.10 E-value=18 Score=22.28 Aligned_cols=31 Identities=3% Similarity=0.046 Sum_probs=22.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEec
Q 033251 31 VVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV 66 (123)
Q Consensus 31 vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~ 66 (123)
+..|+.+.|+.|++....+++. ++.+-.+|+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~ 34 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHY 34 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEee
Confidence 4567789999999998877664 444555554
No 321
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=60.10 E-value=18 Score=19.79 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=19.6
Q ss_pred cccEEEEec-CCeEEE--EEccCCHHHHHHHHHHHh
Q 033251 80 AMPTFVLTK-EGKVLE--RIVGAKKDELQLAVEKHA 112 (123)
Q Consensus 80 ~~Pt~~~~~-~g~~~~--~~~g~~~~~l~~~l~~~~ 112 (123)
+-|+++++. +|+.+. ...+.+.+++.++|.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 357888874 776554 444558999999998753
No 322
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=58.35 E-value=35 Score=20.27 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=13.5
Q ss_pred HHhcCcccccEEEEec
Q 033251 73 AEEWAVEAMPTFVLTK 88 (123)
Q Consensus 73 ~~~~~i~~~Pt~~~~~ 88 (123)
+..+||+.+|.+++.+
T Consensus 76 Aw~lgi~k~PAVVfD~ 91 (114)
T PF07511_consen 76 AWSLGITKYPAVVFDD 91 (114)
T ss_pred HHHhCccccCEEEEcC
Confidence 5678999999999973
No 323
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=58.31 E-value=28 Score=22.37 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=23.3
Q ss_pred EEEEecCCeEEEEEccC-CHHHHHHHHHHHhcc
Q 033251 83 TFVLTKEGKVLERIVGA-KKDELQLAVEKHATT 114 (123)
Q Consensus 83 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~ 114 (123)
++++|+.||++-. |. +.+++...+++++..
T Consensus 55 a~LIF~SGK~VcT--GaKs~ed~~~av~~~~~~ 85 (185)
T COG2101 55 AALIFRSGKVVCT--GAKSVEDVHRAVKKLAKK 85 (185)
T ss_pred eEEEEecCcEEEe--ccCcHHHHHHHHHHHHHH
Confidence 6888999998876 77 778888877776643
No 324
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=58.23 E-value=20 Score=23.02 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=22.7
Q ss_pred EEeehhhHHHHHHhhhhcCCEEEEEEEc
Q 033251 9 SCHTVESWNEQLQKGIAAKKLIVVDFTA 36 (123)
Q Consensus 9 ~i~~~~~~~~~~~~~~~~~k~~vv~f~~ 36 (123)
.+.+.+++.+.+.+++..+++.+|.+..
T Consensus 156 ~v~~~~el~~al~~al~~~gp~vIev~~ 183 (193)
T cd03375 156 FSGDIKQLKEIIKKAIQHKGFSFVEVLS 183 (193)
T ss_pred ecCCHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 4677888888888888888888888874
No 325
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=58.12 E-value=26 Score=18.31 Aligned_cols=55 Identities=9% Similarity=-0.007 Sum_probs=33.5
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc----chhHHHhcCcccccEEEEecCCeE
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE----LKSVAEEWAVEAMPTFVLTKEGKV 92 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~----~~~~~~~~~i~~~Pt~~~~~~g~~ 92 (123)
.|+.+.++.|+..+-.++...-. .....++..+ .+++.+......+|++.. +|..
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~ 61 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFT 61 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEE
Confidence 46677888998887666655433 3444455432 235555566778999864 4543
No 326
>PRK10387 glutaredoxin 2; Provisional
Probab=58.06 E-value=37 Score=21.61 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=27.9
Q ss_pred EEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEE
Q 033251 34 FTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 34 f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~ 86 (123)
++.+.||+|.+.+-.++...-. .....++.........-.+...+|+++.
T Consensus 4 y~~~~sp~~~kv~~~L~~~gi~---y~~~~~~~~~~~~~~~~~p~~~VPvL~~ 53 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLKNIP---VELIVLANDDEATPIRMIGQKQVPILQK 53 (210)
T ss_pred EeCCCCchHHHHHHHHHHcCCC---eEEEEcCCCchhhHHHhcCCcccceEEe
Confidence 4567899999887766555332 2333344333222223334567998854
No 327
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=57.08 E-value=27 Score=22.03 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=23.6
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEc
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTA 36 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~ 36 (123)
.-..+.+.++++..+.++...+++.||.+..
T Consensus 139 ~~~~v~~~~el~~al~~a~~~~~p~liev~~ 169 (177)
T cd02010 139 KGYRIESADDLLPVLERALAADGVHVIDCPV 169 (177)
T ss_pred EEEEECCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3466777888888888877778888887764
No 328
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=57.07 E-value=31 Score=21.87 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=22.2
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
-..+++.+++++.+..+...++++||.+..+
T Consensus 144 ~~~v~~~~el~~al~~a~~~~~p~liev~~~ 174 (186)
T cd02015 144 GLRVEKPEELEAALKEALASDGPVLLDVLVD 174 (186)
T ss_pred eEEeCCHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 4566777778777777766777887777654
No 329
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.64 E-value=42 Score=21.17 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=40.9
Q ss_pred HHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEE------EecccchhHHHhcC
Q 033251 16 WNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLK------VDVDELKSVAEEWA 77 (123)
Q Consensus 16 ~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~------i~~~~~~~~~~~~~ 77 (123)
|..+- ++....-..++..|.-.|.+.-.-+|.|-.-.+.|.+-++.. +|.++.+++..+.+
T Consensus 69 frsit-qsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qig 135 (213)
T KOG0095|consen 69 FRSIT-QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIG 135 (213)
T ss_pred HHHHH-HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHH
Confidence 44433 334567788999999999999999999977777777533333 34444445544444
No 330
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=56.04 E-value=13 Score=25.10 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=39.2
Q ss_pred HHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCc
Q 033251 19 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAV 78 (123)
Q Consensus 19 ~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i 78 (123)
.+.++...+++++ -+.+.++.++.+...++++.+..+......++.++-..+..+|||
T Consensus 213 ~v~~A~~~g~pv~--~~~p~s~~a~~~~~la~ell~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (275)
T TIGR01287 213 IVQKAEIRKMTVI--EYDPESEQANEYRELAKKIYENTEFVIPTPLTMDELEEILMKFGI 270 (275)
T ss_pred HHHHHHHcCCceE--EeCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4444446777775 346888888888888888877654455555566666666667665
No 331
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=55.75 E-value=54 Score=21.24 Aligned_cols=87 Identities=20% Similarity=0.280 Sum_probs=47.8
Q ss_pred hcCCEEEEEEE-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEec----------------------------ccchhHH
Q 033251 25 AAKKLIVVDFT-ASWCPPCKLMSPILSELAKKLP--AVIFLKVDV----------------------------DELKSVA 73 (123)
Q Consensus 25 ~~~k~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~----------------------------~~~~~~~ 73 (123)
..++.+++.|| .++--.|=..--.+...+..+. |..+..+.+ |.+.+++
T Consensus 31 y~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Is 110 (196)
T KOG0852|consen 31 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEIS 110 (196)
T ss_pred hcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhH
Confidence 57899999998 4454445333333333333333 333333333 3456889
Q ss_pred HhcCc----ccccE---EEEecCCeEEEEE-----ccCCHHHHHHHHHHH
Q 033251 74 EEWAV----EAMPT---FVLTKEGKVLERI-----VGAKKDELQLAVEKH 111 (123)
Q Consensus 74 ~~~~i----~~~Pt---~~~~~~g~~~~~~-----~g~~~~~l~~~l~~~ 111 (123)
++||+ .+++- +++..+|-..+.. .|.+.++..+++...
T Consensus 111 rdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAf 160 (196)
T KOG0852|consen 111 RDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAF 160 (196)
T ss_pred HhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHH
Confidence 99996 45662 5555666544421 233566666666543
No 332
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=55.67 E-value=49 Score=20.78 Aligned_cols=43 Identities=26% Similarity=0.253 Sum_probs=33.9
Q ss_pred hcCCEEEEEEE-cCCChhhhhhhHHHHHHHhhCCCeEEEEEecc
Q 033251 25 AAKKLIVVDFT-ASWCPPCKLMSPILSELAKKLPAVIFLKVDVD 67 (123)
Q Consensus 25 ~~~k~~vv~f~-~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~ 67 (123)
..+|..++..+ +-.-|.|..--..+++.+..+.++.+..|..|
T Consensus 42 ~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~D 85 (158)
T COG2077 42 FAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMD 85 (158)
T ss_pred cCCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCC
Confidence 35665555555 66889999999999999999999888877765
No 333
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.40 E-value=88 Score=23.58 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=18.1
Q ss_pred hHHHHHHHhhCCCeEEEEEeccc
Q 033251 46 SPILSELAKKLPAVIFLKVDVDE 68 (123)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~i~~~~ 68 (123)
....+++.+.+|+..+..+|.|.
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~ 294 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDT 294 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEeccc
Confidence 45567778888999999998874
No 334
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=54.95 E-value=29 Score=22.44 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=19.0
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEc
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTA 36 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~ 36 (123)
-..+.+.+++++.+.++...+++.||.+..
T Consensus 154 ~~~v~~~~el~~al~~a~~~~gp~lIeV~v 183 (205)
T cd02003 154 VEKVKTIEELKAALAKAKASDRTTVIVIKT 183 (205)
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 345666667777776666666666666654
No 335
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=53.91 E-value=47 Score=21.46 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=28.4
Q ss_pred EEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCe
Q 033251 34 FTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGK 91 (123)
Q Consensus 34 f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 91 (123)
++...||+|.+.+-.+....-.| ....++.+......+......+|+++.. +|.
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~---e~~~~~~~~~~~~~~~np~g~vP~l~~~-~g~ 56 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPV---EKHVLLNDDEETPIRMIGAKQVPILQKD-DGR 56 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCe---EEEECCCCcchhHHHhcCCCCcceEEee-CCe
Confidence 45677999987766655543332 2222222222223333345679987542 443
No 336
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=53.69 E-value=39 Score=19.03 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=39.5
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhH-HHhcCcccccEEEEecCCeEEEEEccCCHHHHHHHHHHHhc
Q 033251 37 SWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSV-AEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHAT 113 (123)
Q Consensus 37 ~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~-~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~ 113 (123)
..|++|++.+=.+.+..- ...+..+|..+.++. .+......+|+++. +|..+ .+...+.+.|++...
T Consensus 20 g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~--~~~~i-----~eS~~I~eYLde~~~ 87 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKPEDLKDLAPGTQPPFLLY--NGEVK-----TDNNKIEEFLEETLC 87 (91)
T ss_pred CCChhHHHHHHHHHHCCC---ceEEEEeCCCCCCHHHHHhCCCCCCCEEEE--CCEEe-----cCHHHHHHHHHHHcc
Confidence 689999988766654411 244555665554444 44445677997653 44333 245667777776543
No 337
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=52.79 E-value=44 Score=19.30 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=15.9
Q ss_pred EEEEEcCCChhhhhh-hHHHHH
Q 033251 31 VVDFTASWCPPCKLM-SPILSE 51 (123)
Q Consensus 31 vv~f~~~~C~~C~~~-~~~~~~ 51 (123)
|-.||-+-||.|++| ...+..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 557899999999997 444544
No 338
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=51.80 E-value=20 Score=22.13 Aligned_cols=18 Identities=11% Similarity=0.350 Sum_probs=15.0
Q ss_pred hhHHHhcCcccccEEEEe
Q 033251 70 KSVAEEWAVEAMPTFVLT 87 (123)
Q Consensus 70 ~~~~~~~~i~~~Pt~~~~ 87 (123)
.++++++++.++|.++.-
T Consensus 121 ddLA~rL~l~HYPvLIt~ 138 (142)
T PF11072_consen 121 DDLARRLGLSHYPVLITA 138 (142)
T ss_pred HHHHHHhCCCcccEEeec
Confidence 467899999999998753
No 339
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=51.75 E-value=11 Score=28.73 Aligned_cols=73 Identities=26% Similarity=0.329 Sum_probs=44.8
Q ss_pred HHHHHhhhhcCCEEEEEEEcCCChhhhhhhH-HHH--HHHhhC-CCeEEEEEecccchhHHH--------hcCcccccE-
Q 033251 17 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSP-ILS--ELAKKL-PAVIFLKVDVDELKSVAE--------EWAVEAMPT- 83 (123)
Q Consensus 17 ~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~-~~~--~~~~~~-~~v~~~~i~~~~~~~~~~--------~~~i~~~Pt- 83 (123)
++.++.+.+++||+++-..-+.|.+|..+.. .|+ +..+.. .++.-+.+|.++-|++-+ ..|-.+.|-
T Consensus 102 qeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPms 181 (786)
T KOG2244|consen 102 QEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMS 181 (786)
T ss_pred HHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCcee
Confidence 4556666689999999999999999998743 332 233332 244445556555555432 235567774
Q ss_pred EEEecC
Q 033251 84 FVLTKE 89 (123)
Q Consensus 84 ~~~~~~ 89 (123)
+.+..+
T Consensus 182 V~LTPd 187 (786)
T KOG2244|consen 182 VFLTPD 187 (786)
T ss_pred EEeCCC
Confidence 333344
No 340
>PRK06163 hypothetical protein; Provisional
Probab=51.70 E-value=33 Score=22.36 Aligned_cols=31 Identities=0% Similarity=-0.045 Sum_probs=22.8
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEcCC
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTASW 38 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~ 38 (123)
..+.+.++++..+.++...+++.||.+..+.
T Consensus 144 ~~v~~~~el~~al~~a~~~~~p~lIeV~i~~ 174 (202)
T PRK06163 144 HWAADEAHFEALVDQALSGPGPSFIAVRIDD 174 (202)
T ss_pred EEeCCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 3577778888888877777788888777543
No 341
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=50.62 E-value=1.1e+02 Score=23.13 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=31.2
Q ss_pred cCCEEEEEEEcCCC-hhhhhhhHHHHHHHhhCCC--eEEEEEe-cccchhHHHhcCccccc
Q 033251 26 AKKLIVVDFTASWC-PPCKLMSPILSELAKKLPA--VIFLKVD-VDELKSVAEEWAVEAMP 82 (123)
Q Consensus 26 ~~k~~vv~f~~~~C-~~C~~~~~~~~~~~~~~~~--v~~~~i~-~~~~~~~~~~~~i~~~P 82 (123)
+-..+||+|+.+.- ..=...+..+.++..+++. +.++.+. ..-.+..+=+.++...|
T Consensus 280 ~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~ 340 (499)
T PF05679_consen 280 NVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFP 340 (499)
T ss_pred ceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCC
Confidence 34467777776432 2223456788888888875 5555555 22222333344555444
No 342
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=50.26 E-value=25 Score=26.90 Aligned_cols=59 Identities=7% Similarity=-0.023 Sum_probs=40.4
Q ss_pred CeEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccC-CHHHHHHHHHHHhccccc
Q 033251 58 AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKHATTVEN 117 (123)
Q Consensus 58 ~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~~~~ 117 (123)
++.+..+-..++..+.+ ++++..|+.+++++|+........ +.+...+.|.+.+.+..+
T Consensus 215 ~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~~~ 274 (606)
T KOG1731|consen 215 QVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDKNE 274 (606)
T ss_pred CcceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcCccc
Confidence 45555554444444455 889999999999999776654444 566788888888765443
No 343
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=49.58 E-value=47 Score=20.62 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=23.3
Q ss_pred hhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC
Q 033251 23 GIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP 57 (123)
Q Consensus 23 ~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~ 57 (123)
...+.+|-+|...+ ++..|+.+...++++.+...
T Consensus 58 ~i~~~kP~vI~v~g-~~~~s~~l~~~v~~~v~~~~ 91 (150)
T PF14639_consen 58 FIEKHKPDVIAVGG-NSRESRKLYDDVRDIVEELD 91 (150)
T ss_dssp HHHHH--SEEEE---SSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCeEEEEcC-CChhHHHHHHHHHHHHHHhh
Confidence 34566777777744 78999999999988887764
No 344
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=49.47 E-value=21 Score=22.79 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=24.5
Q ss_pred CCCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 3 EEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 3 ~~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
+.|++..+ +..++-+.+.+ ..+.|++++|=..
T Consensus 31 S~GNPT~l-sG~elV~lIk~--a~~DPV~VMfDD~ 62 (180)
T PF14097_consen 31 SAGNPTPL-SGEELVELIKQ--APHDPVLVMFDDK 62 (180)
T ss_pred cCCCCCcC-CHHHHHHHHHh--CCCCCEEEEEeCC
Confidence 56777777 57888888887 5788999999443
No 345
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=48.92 E-value=19 Score=23.00 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=23.7
Q ss_pred HHHHhhCCCeEEEE---EecccchhHHHhcCcccccEEEEecCCeE
Q 033251 50 SELAKKLPAVIFLK---VDVDELKSVAEEWAVEAMPTFVLTKEGKV 92 (123)
Q Consensus 50 ~~~~~~~~~v~~~~---i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 92 (123)
..+..++.+++|+. +|.+..-.++.--.-..+|.+++|++|-.
T Consensus 123 K~il~~Fkd~qFf~GeSmd~dgmv~l~~Yredg~tP~~~f~KdGL~ 168 (172)
T PTZ00151 123 KHILENFDDFEFYLGESLDCEAGLIYGYYKGEELAPRFVYIKDGLK 168 (172)
T ss_pred HHHHHhcCCceEeecCCCCCCccEEEEeecCCCcceEEEEEcccce
Confidence 44455556667763 33333333322222335999999998844
No 346
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=48.80 E-value=78 Score=21.01 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=43.7
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhc-CcccccEEEEecCCeEEEE
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEW-AVEAMPTFVLTKEGKVLER 95 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~-~i~~~Pt~~~~~~g~~~~~ 95 (123)
..|+..+..=|+++.+--..|+..-+++.+.--++.+..+..-..++..... |+..+|...+...|..+..
T Consensus 2 ~rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~~E 73 (211)
T PF02702_consen 2 RRGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTLEE 73 (211)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEEEE
T ss_pred CCccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEeccc
Confidence 3577777667789999999999999999988778999999887666654443 6788888777666655543
No 347
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=48.71 E-value=65 Score=20.06 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=27.4
Q ss_pred HHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEE
Q 033251 17 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLK 63 (123)
Q Consensus 17 ~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~ 63 (123)
.+........++-..+++-.+-|++|+ ..+..+++... .+.+..
T Consensus 89 qqA~d~G~~~g~~~tm~Vdr~vC~~C~---~~i~~~a~~lGl~~L~I~~ 134 (146)
T PF14437_consen 89 QQAYDAGKTVGRSMTMYVDRDVCGYCG---GDIPSMAEKLGLKSLTIHE 134 (146)
T ss_pred HHHHHhcCccCCeEEEEECcccchHHH---HHHHHHHHHcCCCeEEEEe
Confidence 333433333366677778799999999 66666666653 244443
No 348
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=48.64 E-value=56 Score=19.37 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.0
Q ss_pred HHhcCcccccEEEEecC
Q 033251 73 AEEWAVEAMPTFVLTKE 89 (123)
Q Consensus 73 ~~~~~i~~~Pt~~~~~~ 89 (123)
+..+||+++|.+++.+.
T Consensus 77 Aw~lGi~k~PAVV~D~~ 93 (113)
T TIGR03757 77 AWQLGVTKIPAVVVDRR 93 (113)
T ss_pred HHHcCCccCCEEEEcCC
Confidence 45789999999999754
No 349
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=46.54 E-value=23 Score=20.71 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=14.8
Q ss_pred hhHHHhcCcccccEEEEe
Q 033251 70 KSVAEEWAVEAMPTFVLT 87 (123)
Q Consensus 70 ~~~~~~~~i~~~Pt~~~~ 87 (123)
.++++++++.++|.++.-
T Consensus 83 ddLa~rL~l~hYPvLit~ 100 (105)
T TIGR03765 83 DDLAERLGLRHYPVLITA 100 (105)
T ss_pred HHHHHHhCCCcccEEEec
Confidence 467899999999987753
No 350
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=46.50 E-value=49 Score=19.71 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=27.0
Q ss_pred ccccEEEEecCCeEEEEEccC-CHHHHHHHHHHHh
Q 033251 79 EAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKHA 112 (123)
Q Consensus 79 ~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 112 (123)
..+|.+++|+.-+.++-.-=. +...+++.+++..
T Consensus 81 p~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r~ 115 (116)
T PF11317_consen 81 PGFPILFYFKETQSIHFLPIIFDPKQLREQLEERC 115 (116)
T ss_pred CCCCEEEEEecCCcceeeeeecCHHHHHHHHHHhC
Confidence 479999999987777766555 8889998888764
No 351
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=46.30 E-value=73 Score=20.21 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=22.2
Q ss_pred cEEEEeehhhHHHHHHhhhh-cCCEEEEEEEc
Q 033251 6 QVISCHTVESWNEQLQKGIA-AKKLIVVDFTA 36 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~-~~k~~vv~f~~ 36 (123)
.-..+.+.+++++.+.++.. .+++.||....
T Consensus 142 ~~~~v~~~~el~~al~~a~~~~~~p~liev~~ 173 (183)
T cd02005 142 LSFRVKTEGELDEALKDALFNRDKLSLIEVIL 173 (183)
T ss_pred cEEEecCHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 45667777788887777766 67777777764
No 352
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=45.59 E-value=50 Score=19.01 Aligned_cols=68 Identities=18% Similarity=0.289 Sum_probs=37.9
Q ss_pred EEcCCChhhhhhhHH-------HHHHHhhCCCeEEEEEecccchhHHHhcCccc-ccEEEEecCCeEEEEEccCCHHHHH
Q 033251 34 FTASWCPPCKLMSPI-------LSELAKKLPAVIFLKVDVDELKSVAEEWAVEA-MPTFVLTKEGKVLERIVGAKKDELQ 105 (123)
Q Consensus 34 f~~~~C~~C~~~~~~-------~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~-~Pt~~~~~~g~~~~~~~g~~~~~l~ 105 (123)
|....||.|..++.. ..-....|.|+..+ +|.+ ...+++.++++. +|- ...-...|.-++++.
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G~i~i-~dP~-~SwVAk~l~i~~~~pG-------~YAi~V~g~lp~~i~ 88 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEGIIAL-MDPE-KSWVARWQRIDKFVPG-------IYAISVSGRLPEDIV 88 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcceEEEE-ECCc-hhHHHHHhCCCCCCCC-------eEEEEecCcCCHHHH
Confidence 778899999743321 22234445454333 3443 356778888863 453 333335566566666
Q ss_pred HHHHH
Q 033251 106 LAVEK 110 (123)
Q Consensus 106 ~~l~~ 110 (123)
..++.
T Consensus 89 ~~l~~ 93 (98)
T cd07973 89 EELES 93 (98)
T ss_pred HHHHH
Confidence 66554
No 353
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=45.09 E-value=70 Score=20.43 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=22.5
Q ss_pred EEEEecCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 83 TFVLTKEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 83 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
++++|..|+++-. |. +.+++++.++++.+
T Consensus 140 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i~~ 169 (174)
T cd04518 140 VLLLFSSGKMVIT--GAKSEEDAKRAVEKLLS 169 (174)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 5788889988876 77 78888888877654
No 354
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=45.08 E-value=82 Score=21.86 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=40.2
Q ss_pred hHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEec--ccch---hHHHhcCcccccEEEEe--
Q 033251 15 SWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV--DELK---SVAEEWAVEAMPTFVLT-- 87 (123)
Q Consensus 15 ~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~--~~~~---~~~~~~~i~~~Pt~~~~-- 87 (123)
.|.+.+........-....++.+.|..-..=.....++++.. ++-++.-+- ++.. +++++.+ .|++.+-
T Consensus 169 ~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~v-D~miVIGg~~SsNT~kL~eia~~~~---~~t~~Ie~~ 244 (281)
T PF02401_consen 169 KFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEV-DAMIVIGGKNSSNTRKLAEIAKEHG---KPTYHIETA 244 (281)
T ss_dssp HHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCS-SEEEEES-TT-HHHHHHHHHHHHCT---TCEEEESSG
T ss_pred HHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhC-CEEEEecCCCCccHHHHHHHHHHhC---CCEEEeCCc
Confidence 344443332223333333355666655555555555555432 221111111 1111 3344443 3666553
Q ss_pred --------cCCeEEEEEccC-CHHHHHHHHHHHh
Q 033251 88 --------KEGKVLERIVGA-KKDELQLAVEKHA 112 (123)
Q Consensus 88 --------~~g~~~~~~~g~-~~~~l~~~l~~~~ 112 (123)
++.+.+....|. +++.+.+.+.+.+
T Consensus 245 ~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l 278 (281)
T PF02401_consen 245 DELDPEWLKGVKKVGITAGASTPDWIIEEVIDRL 278 (281)
T ss_dssp GG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHH
T ss_pred cccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 345678888888 5766666655544
No 355
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=44.88 E-value=61 Score=20.79 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=23.2
Q ss_pred EEEEeehhhHHHHHHhhhh---cCCEEEEEEEcC
Q 033251 7 VISCHTVESWNEQLQKGIA---AKKLIVVDFTAS 37 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~---~~k~~vv~f~~~ 37 (123)
-..+.+.++++..+.++.. .++|+||.+..+
T Consensus 146 ~~~v~~~~el~~al~~a~~~~~~~~p~liev~v~ 179 (196)
T cd02013 146 GITVDKPEDVGPALQKAIAMMAEGKTTVIEIVCD 179 (196)
T ss_pred EEEECCHHHHHHHHHHHHhcCCCCCeEEEEEEeC
Confidence 3567778888888887766 778888887743
No 356
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=44.33 E-value=59 Score=18.39 Aligned_cols=32 Identities=6% Similarity=0.047 Sum_probs=23.2
Q ss_pred cccEEEEec--CCeEEEEEccCCHHHHHHHHHHHhcc
Q 033251 80 AMPTFVLTK--EGKVLERIVGAKKDELQLAVEKHATT 114 (123)
Q Consensus 80 ~~Pt~~~~~--~g~~~~~~~g~~~~~l~~~l~~~~~~ 114 (123)
.=|+++++. +| .-+...+++++...|++++..
T Consensus 52 ~gp~vvvyP~~~g---~wy~~v~p~~v~~Iv~~hl~~ 85 (97)
T cd03062 52 FAGNVIIYPKGDG---IWYGRVTPEHVPPIVDRLILG 85 (97)
T ss_pred cCCEEEEEeCCCe---eEEeecCHHHHHHHHHHHhcC
Confidence 468999998 54 222334899999999988764
No 357
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=44.32 E-value=26 Score=18.83 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=35.0
Q ss_pred cCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHh---cCcccccEEEEecCCeEEEEEccCCHHHHHHHHHH
Q 033251 36 ASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEE---WAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 110 (123)
Q Consensus 36 ~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~---~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~ 110 (123)
.+||++|.+.+-.+....-.| .+..++.......... -....+|+++. .+|..+. ....+.+.|++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~---~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l~-----eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEY---KTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVIG-----DSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCC---eEEEecCCCcccccccccCCCCceeCeEEE-CCCCEEe-----CHHHHHHHHHH
Confidence 378999998887776654333 3444444332222221 23457898854 3254322 34455555554
No 358
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=44.14 E-value=65 Score=22.73 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=30.2
Q ss_pred EEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc
Q 033251 29 LIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL 69 (123)
Q Consensus 29 ~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~ 69 (123)
..||.+ .|+.|.+....++.+......+.++.||++..
T Consensus 78 ~~lIEL---GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~ 115 (319)
T TIGR03439 78 SMLVEL---GSGNLRKVGILLEALERQKKSVDYYALDVSRS 115 (319)
T ss_pred CEEEEE---CCCchHHHHHHHHHHHhcCCCceEEEEECCHH
Confidence 356655 78889999999999986655799999999864
No 359
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=43.97 E-value=1.3e+02 Score=22.23 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=38.5
Q ss_pred CeEEEEEecccchh-------------HHHhcC-cccccEEEEecCC---eEEEEEccCCHHHHHHHHHHHh
Q 033251 58 AVIFLKVDVDELKS-------------VAEEWA-VEAMPTFVLTKEG---KVLERIVGAKKDELQLAVEKHA 112 (123)
Q Consensus 58 ~v~~~~i~~~~~~~-------------~~~~~~-i~~~Pt~~~~~~g---~~~~~~~g~~~~~l~~~l~~~~ 112 (123)
++.++.+|.+..++ +...+. ....|-+++..+| +.+-+..|.++.++.+.+.+++
T Consensus 376 ~~~~~~~d~~~~p~~~~~~e~~t~~w~~~~a~~~~~~~pdvi~d~g~~g~Ep~i~v~g~~~~~v~~~~~~l~ 447 (448)
T PRK08573 376 GYTVAYIDRREEPEEVKAREGASIPWIIEEAYKQTGRRPDIIYDLGDWGKEPMIRILGRTPVEVVEKLLRLI 447 (448)
T ss_pred CCeEEEEcCCCCchhhhhccccchhHHHHHHHHhcCCCCeEEEECCCCCcCcEEEEECCCHHHHHHHHHHHh
Confidence 46777787766553 223332 3679988888643 6677888999988888887764
No 360
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=43.75 E-value=95 Score=20.56 Aligned_cols=72 Identities=15% Similarity=0.036 Sum_probs=50.5
Q ss_pred EEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc---hhHHHhcCcccccEEEEecCCeEEEEEccCC
Q 033251 29 LIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL---KSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 100 (123)
Q Consensus 29 ~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~---~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~ 100 (123)
+.+-.+|--.|++=+.+....+-+.++||++.+.--|.... +-+++-..+-.+=.+.+.-.|.-...+.|..
T Consensus 70 ptl~i~fCvSCgYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl~ 144 (226)
T KOG3286|consen 70 PTLEINFCVSCGYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGLG 144 (226)
T ss_pred CcEEEEEEEecCcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceecCC
Confidence 66667777889998888888888899999988877776543 2234444444444555666776666777774
No 361
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=43.52 E-value=77 Score=20.26 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEecCCeEEEEEccC-CHHHHHHHHHHHh
Q 033251 83 TFVLTKEGKVLERIVGA-KKDELQLAVEKHA 112 (123)
Q Consensus 83 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 112 (123)
++.+|.+|+.+-. |. +.++.+..+++..
T Consensus 49 t~lIF~SGKiviT--Gaks~e~a~~a~~~i~ 77 (174)
T cd04516 49 TALIFSSGKMVCT--GAKSEDDSKLAARKYA 77 (174)
T ss_pred EEEEECCCeEEEE--ecCCHHHHHHHHHHHH
Confidence 6899999998876 66 6666666665554
No 362
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=43.51 E-value=48 Score=17.06 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=24.4
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEE
Q 033251 37 SWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 37 ~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~ 86 (123)
++|++|.+.+-.+... ++.+-.++++... .-....+|++..
T Consensus 14 s~sp~~~~v~~~L~~~-----~i~~~~~~~~~~~----~~p~g~vP~l~~ 54 (72)
T cd03054 14 SLSPECLKVETYLRMA-----GIPYEVVFSSNPW----RSPTGKLPFLEL 54 (72)
T ss_pred CCCHHHHHHHHHHHhC-----CCceEEEecCCcc----cCCCcccCEEEE
Confidence 6999999988777653 4444444443211 112346888765
No 363
>PRK15113 glutathione S-transferase; Provisional
Probab=43.04 E-value=90 Score=20.11 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=32.4
Q ss_pred EEEEEEEcC--CChhhhhhhHHHHHHHhhCCCeEEEEEeccc----chhHHHhcCcccccEEEE
Q 033251 29 LIVVDFTAS--WCPPCKLMSPILSELAKKLPAVIFLKVDVDE----LKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 29 ~~vv~f~~~--~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~----~~~~~~~~~i~~~Pt~~~ 86 (123)
+-+..++.+ .|++|.+.+=.+.+..-. +.+..+|... .+++.+-.....+|++..
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~---~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~ 64 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLP---FELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH 64 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCccccCHHHHhcCCCCCCCEEEE
Confidence 334445544 699997776666555322 4455566532 245555555677999874
No 364
>PRK00394 transcription factor; Reviewed
Probab=42.05 E-value=82 Score=20.21 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=22.1
Q ss_pred EEEEecCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 83 TFVLTKEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 83 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
++++|..|+++-. |. +.+++++.++++.+
T Consensus 141 ~~lIF~SGKvvit--Gaks~~~~~~a~~~i~~ 170 (179)
T PRK00394 141 VVLLFGSGKLVIT--GAKSEEDAEKAVEKILE 170 (179)
T ss_pred EEEEEcCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 5778888988766 77 77888888777654
No 365
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=41.75 E-value=98 Score=20.17 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=48.1
Q ss_pred HHhhhhcCCEEEEE-EEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccchhHHHhcCcccccEEEEecC---CeEEE
Q 033251 20 LQKGIAAKKLIVVD-FTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKE---GKVLE 94 (123)
Q Consensus 20 ~~~~~~~~k~~vv~-f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~---g~~~~ 94 (123)
+..+.+.-...+.. +.+...+ ......++.+...-.+ +.+...+.+....+.++..-.++|.+.+... .....
T Consensus 20 ~~~~a~~~g~~~~~~~~~~~d~--~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~ 97 (257)
T PF13407_consen 20 AKAAAKELGYEVEIVFDAQNDP--EEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRA 97 (257)
T ss_dssp HHHHHHHHTCEEEEEEESTTTH--HHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSS
T ss_pred HHHHHHHcCCEEEEeCCCCCCH--HHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccce
Confidence 33333444444444 4566655 5666777777666554 5555566666667777777778899888755 22223
Q ss_pred EEccCCHHHH
Q 033251 95 RIVGAKKDEL 104 (123)
Q Consensus 95 ~~~g~~~~~l 104 (123)
.+.|.+...+
T Consensus 98 ~~v~~d~~~~ 107 (257)
T PF13407_consen 98 AYVGTDNYEA 107 (257)
T ss_dssp EEEEE-HHHH
T ss_pred eeeeccHHHH
Confidence 3445544333
No 366
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=41.27 E-value=78 Score=19.86 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=13.1
Q ss_pred EEeehhhHHHHHHhhhhcCCEEEEEEE
Q 033251 9 SCHTVESWNEQLQKGIAAKKLIVVDFT 35 (123)
Q Consensus 9 ~i~~~~~~~~~~~~~~~~~k~~vv~f~ 35 (123)
.+.+.+++++.+.++...+++.+|.+.
T Consensus 145 ~v~~~~el~~~l~~a~~~~~p~liev~ 171 (178)
T cd02014 145 RVEDPDELEAALDEALAADGPVVIDVV 171 (178)
T ss_pred EeCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 344445555555544444455555443
No 367
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=41.25 E-value=44 Score=23.06 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=26.4
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
..+.+.+++...+.+++..++++||.+..+
T Consensus 172 ~~v~~~~el~~al~~Al~~~Gp~lIeV~~~ 201 (277)
T PRK09628 172 ESVIDPQKLEKLLVKGFSHKGFSFFDVFSN 201 (277)
T ss_pred EccCCHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 367889999999999999999999999765
No 368
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=41.14 E-value=90 Score=19.56 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=33.2
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC--eEEEEEec
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPA--VIFLKVDV 66 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~--v~~~~i~~ 66 (123)
.++.+.+.++++.++.|.-+...++.+++.+.+ +.+-.+++
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~ 168 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVEC 168 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 456778888899999999999999999999875 55555544
No 369
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=41.14 E-value=1.1e+02 Score=20.54 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=40.1
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEecccc-hhHHHhcCcccccEEEEecCCeEEEEEccCCHHHHHHHHHHHh
Q 033251 37 SWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL-KSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHA 112 (123)
Q Consensus 37 ~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~-~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~ 112 (123)
..||+|++.+=.+.... -.+.+..+|.... +.+.+-.....+|+++. +|..+. ....|.+.|++..
T Consensus 17 ~~cp~~~rv~i~L~ekg---i~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~l~-----ES~aI~eYL~e~~ 83 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKG---VVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEVKT-----DVNKIEEFLEETL 83 (236)
T ss_pred CCCHhHHHHHHHHHHcC---CCcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEEee-----cHHHHHHHHHHHc
Confidence 67899998877776521 1356666776554 55555556678999864 454332 2445555555443
No 370
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=40.55 E-value=87 Score=19.95 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=21.9
Q ss_pred EEEEecCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 83 TFVLTKEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 83 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
++.+|..|+++-. |. +.+++++.++.+.+
T Consensus 141 t~lIF~sGkvvit--Gaks~~~~~~a~~~i~~ 170 (174)
T cd00652 141 VLLIFVSGKIVIT--GAKSREDIYEAVEKIYP 170 (174)
T ss_pred EEEEEcCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 4678888888765 77 67888888877654
No 371
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=40.48 E-value=81 Score=18.88 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=35.5
Q ss_pred CCChhhhhhhHHHHHHHhhC----C--C--eEEEEEecccchhHHHhcCcccccEEEEecCCeEEE
Q 033251 37 SWCPPCKLMSPILSELAKKL----P--A--VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLE 94 (123)
Q Consensus 37 ~~C~~C~~~~~~~~~~~~~~----~--~--v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 94 (123)
..|..|......+.+..+.. . | +.+..+.++.. ++..++ -+.|++.+ +|+.+.
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~--~~S~~I~i--nG~piE 73 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP--LESPTIRI--NGRPIE 73 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc--cCCCeeeE--CCEehh
Confidence 38999998877776665553 2 3 77777777764 566666 56677766 666553
No 372
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=40.17 E-value=1e+02 Score=22.15 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=41.6
Q ss_pred cCCEEEEEEEcCCChhhh-hhhHHHHHHHhhC---C-CeEEEEEecccc--hh-HHHhcCcccc-c-EEEEecCCeEEEE
Q 033251 26 AKKLIVVDFTASWCPPCK-LMSPILSELAKKL---P-AVIFLKVDVDEL--KS-VAEEWAVEAM-P-TFVLTKEGKVLER 95 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~-~~~~~~~~~~~~~---~-~v~~~~i~~~~~--~~-~~~~~~i~~~-P-t~~~~~~g~~~~~ 95 (123)
+..+-++- =|.|+-|. .+....+++.+.+ + .+++..+-|-=| .+ --.++||.+- + ..++|++|+.+.+
T Consensus 254 ~~g~~iiS--CPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~k 331 (346)
T TIGR00612 254 ARGVEIVA--CPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAK 331 (346)
T ss_pred cCCCeEEE--CCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEe
Confidence 44455543 37777665 2334444444443 3 377777766321 11 1356888765 4 5888999999877
Q ss_pred EccC
Q 033251 96 IVGA 99 (123)
Q Consensus 96 ~~g~ 99 (123)
..+.
T Consensus 332 v~~~ 335 (346)
T TIGR00612 332 QPET 335 (346)
T ss_pred cCHH
Confidence 6543
No 373
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=39.79 E-value=47 Score=22.86 Aligned_cols=40 Identities=18% Similarity=0.387 Sum_probs=33.0
Q ss_pred HhcCcccccEEEEecCCeEEEEEccCCHHHHHHHHHHHhc
Q 033251 74 EEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHAT 113 (123)
Q Consensus 74 ~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~ 113 (123)
.+||.+++=||++..+|.+..+-.|.+...+.+.|...-+
T Consensus 225 a~YG~TGVmtF~Vn~~g~VYqkDLG~~t~~~A~ai~~FdP 264 (271)
T PF11453_consen 225 AEYGETGVMTFMVNQDGQVYQKDLGPDTAAKAAAITSFDP 264 (271)
T ss_pred hhhCCCceEEEEECCCCcEEecccCcchHHHhhhhhccCC
Confidence 5688899999999999999999999987777777665443
No 374
>PLN00062 TATA-box-binding protein; Provisional
Probab=39.71 E-value=92 Score=20.02 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=21.4
Q ss_pred EEEEecCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 83 TFVLTKEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 83 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
++++|..|+++-. |. +.+++++.++.+.+
T Consensus 140 ~~liF~sGkvvit--Gaks~~~~~~ai~~i~p 169 (179)
T PLN00062 140 VLLIFVSGKIVIT--GAKVREEIYTAFENIYP 169 (179)
T ss_pred EEEEeCCCEEEEE--ecCCHHHHHHHHHHHHH
Confidence 4677788888765 66 67888888777654
No 375
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=39.70 E-value=98 Score=19.75 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=20.7
Q ss_pred EEEEecCCeEEEEEccC-CHHHHHHHHHHHh
Q 033251 83 TFVLTKEGKVLERIVGA-KKDELQLAVEKHA 112 (123)
Q Consensus 83 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 112 (123)
++.+|.+|+.+-. |. +.++++..+++..
T Consensus 49 t~lIF~sGKiviT--Gaks~~~~~~a~~~~~ 77 (174)
T cd04517 49 TASVWSSGKITIT--GATSEEEAKQAARRAA 77 (174)
T ss_pred EEEEECCCeEEEE--ccCCHHHHHHHHHHHH
Confidence 6889999998876 66 6777666666554
No 376
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=39.26 E-value=1.6e+02 Score=21.86 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=28.6
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEe
Q 033251 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVD 65 (123)
Q Consensus 30 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~ 65 (123)
-+|.|.+-.-+.-..+.|.++++.+.+|++.+..-.
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt 85 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTT 85 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 467788888889999999999999999875554433
No 377
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=39.17 E-value=54 Score=18.14 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=17.1
Q ss_pred CCCcEEEEeehhhHHHHHHh
Q 033251 3 EEGQVISCHTVESWNEQLQK 22 (123)
Q Consensus 3 ~~~~~~~i~~~~~~~~~~~~ 22 (123)
..|.+..|++.++|.+++..
T Consensus 49 ~~gDLLPInNDdNf~kAlss 68 (80)
T cd06403 49 PHGDLLPINNDDNFLKALSS 68 (80)
T ss_pred CCCCEecccCcHHHHHHHHc
Confidence 36889999999999999954
No 378
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=38.79 E-value=49 Score=21.41 Aligned_cols=25 Identities=12% Similarity=0.375 Sum_probs=13.0
Q ss_pred ehhhHHHHHHhhhhcCCEEEEEEEcCCC
Q 033251 12 TVESWNEQLQKGIAAKKLIVVDFTASWC 39 (123)
Q Consensus 12 ~~~~~~~~~~~~~~~~k~~vv~f~~~~C 39 (123)
+..++.+.+. ..++|+++.|.+-|=
T Consensus 120 s~~~lr~~l~---~~~~P~LllFGTGwG 144 (185)
T PF09936_consen 120 SYAELRRMLE---EEDRPVLLLFGTGWG 144 (185)
T ss_dssp -HHHHHHHHH---H--S-EEEEE--TT-
T ss_pred CHHHHHHHHh---ccCCeEEEEecCCCC
Confidence 3455666653 589999999999884
No 379
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=38.11 E-value=61 Score=16.74 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=30.2
Q ss_pred CChhhhhhhHHHHHHHhhCCCeEEEEEe---cccchhHHHhcCcccccEEEEecCCe
Q 033251 38 WCPPCKLMSPILSELAKKLPAVIFLKVD---VDELKSVAEEWAVEAMPTFVLTKEGK 91 (123)
Q Consensus 38 ~C~~C~~~~~~~~~~~~~~~~v~~~~i~---~~~~~~~~~~~~i~~~Pt~~~~~~g~ 91 (123)
.||+|++.+=.++...-.+. +.++... ....+.+.+--.-..+|++..- +|+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~-~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~ 55 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYE-IKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGT 55 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCE-EEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTE
T ss_pred CchHhHHHHHHHHHhCCCCE-EEEEeeecCccccChhhhccCcCeEEEEEEEC-CCC
Confidence 59999998887777755442 3333111 1122456555567789998874 666
No 380
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=37.20 E-value=84 Score=21.77 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=26.4
Q ss_pred EeehhhHHHHHHhhhhcCCEEEEEEEcCCChh
Q 033251 10 CHTVESWNEQLQKGIAAKKLIVVDFTASWCPP 41 (123)
Q Consensus 10 i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~ 41 (123)
+.+.+++.+.+.+++..+.+.+|.+..+ |+.
T Consensus 166 ~~~~~~l~~~i~~Al~~~Gp~lIeV~~p-C~~ 196 (280)
T PRK11869 166 SGDIEETKEILKEAIKHKGLAIVDIFQP-CVS 196 (280)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEECC-CCC
Confidence 5577999999999999999999999987 444
No 381
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=37.00 E-value=86 Score=20.17 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=18.1
Q ss_pred EEEeehhhHHHHHHhhhh----cCCEEEEEEE
Q 033251 8 ISCHTVESWNEQLQKGIA----AKKLIVVDFT 35 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~----~~k~~vv~f~ 35 (123)
..+.+.++++..+.++.. .+++.||.+.
T Consensus 161 ~~v~~~~el~~al~~a~~~~~~~~~p~liev~ 192 (202)
T cd02006 161 IRVTKPEELAAAFEQAKKLMAEHRVPVVVEAI 192 (202)
T ss_pred EEECCHHHHHHHHHHHHHhcccCCCcEEEEEE
Confidence 556667777777776653 5667776665
No 382
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=36.68 E-value=1.7e+02 Score=21.32 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=66.9
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC---CeEEEEEecccchhHH----HhcCc
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDELKSVA----EEWAV 78 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~---~v~~~~i~~~~~~~~~----~~~~i 78 (123)
.+..++ ..++.+.... .-+..-++.|.....|.-..+...++++++... ++.++.||.+..|-+. +.|+|
T Consensus 250 tlrkl~-~~~m~e~Wed--d~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~I 326 (383)
T PF01216_consen 250 TLRKLR-PEDMFETWED--DIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGI 326 (383)
T ss_dssp SEEE---GGGHHHHHHS--SSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT
T ss_pred HhhhCC-hhhhhhhhcc--cCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCc
Confidence 344553 5666666654 346677888999999999999999999999874 5999999999988765 44565
Q ss_pred c-cccEEEEe--cCCeEEEEE-ccC----CHHHHHHHHHHHhc
Q 033251 79 E-AMPTFVLT--KEGKVLERI-VGA----KKDELQLAVEKHAT 113 (123)
Q Consensus 79 ~-~~Pt~~~~--~~g~~~~~~-~g~----~~~~l~~~l~~~~~ 113 (123)
. .-|.+-+. .+...++-- .+. +.+.|..||+..+.
T Consensus 327 dl~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVls 369 (383)
T PF01216_consen 327 DLSRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLS 369 (383)
T ss_dssp -TTS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHC
T ss_pred cccCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhc
Confidence 4 25886666 344444422 211 47899999999884
No 383
>PRK11752 putative S-transferase; Provisional
Probab=36.44 E-value=1.4e+02 Score=20.25 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=36.0
Q ss_pred EEEcCCChhhhhhhHHHHHH-HhhCCC--eEEEEEeccc----chhHHHhcCcccccEEEEec
Q 033251 33 DFTASWCPPCKLMSPILSEL-AKKLPA--VIFLKVDVDE----LKSVAEEWAVEAMPTFVLTK 88 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~-~~~~~~--v~~~~i~~~~----~~~~~~~~~i~~~Pt~~~~~ 88 (123)
.+|...++.|++.+=.++++ ....++ +.+..++... .+++.+-.....+|+++...
T Consensus 46 ~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~d 108 (264)
T PRK11752 46 QLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRS 108 (264)
T ss_pred EEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCC
Confidence 34445699999998888875 333333 5556666543 34555555567899997643
No 384
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=36.39 E-value=63 Score=21.60 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=23.1
Q ss_pred EEeehhhHHHHHHhhhh-cCCEEEEEEEcC
Q 033251 9 SCHTVESWNEQLQKGIA-AKKLIVVDFTAS 37 (123)
Q Consensus 9 ~i~~~~~~~~~~~~~~~-~~k~~vv~f~~~ 37 (123)
.+.+.+++...+.+++. .++|.+|....+
T Consensus 174 ~v~~~~~l~~al~~al~~~~GP~lI~v~i~ 203 (237)
T cd02018 174 SPALKKHFLKVVKEAISRTDGPTFIHAYTP 203 (237)
T ss_pred ccCCHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 36777888888888876 788888888865
No 385
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=36.15 E-value=1.3e+02 Score=20.13 Aligned_cols=48 Identities=15% Similarity=-0.028 Sum_probs=33.2
Q ss_pred ehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEec
Q 033251 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV 66 (123)
Q Consensus 12 ~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~ 66 (123)
+.+++.+.+.....++ +-+|.. ....+.+.+.+++++||++.|..+|.
T Consensus 42 ~~~~~~~~i~~~~~~g-~dlIi~------~g~~~~~~~~~vA~~~p~~~F~~~d~ 89 (258)
T cd06353 42 EGADAERVLRELAAQG-YDLIFG------TSFGFMDAALKVAKEYPDVKFEHCSG 89 (258)
T ss_pred chHhHHHHHHHHHHcC-CCEEEE------CchhhhHHHHHHHHHCCCCEEEECCC
Confidence 3456777776654444 333333 44677888999999999999888875
No 386
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=35.26 E-value=34 Score=22.81 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=22.1
Q ss_pred hcCCEEEEEEEcCCChhhhhh-hHHHHHHHhh
Q 033251 25 AAKKLIVVDFTASWCPPCKLM-SPILSELAKK 55 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~-~~~~~~~~~~ 55 (123)
..+++-|-.||-.-||+|..| ...+-.+-..
T Consensus 37 ~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~ 68 (220)
T KOG3160|consen 37 QAPKVNITLYYEALCPDCSKFIRNQLYPFFDN 68 (220)
T ss_pred cCCeeEEEEEEEecCccHHHHHHHHHHHHHhh
Confidence 345788889999999999988 3444444333
No 387
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=34.85 E-value=66 Score=20.58 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=20.5
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEc
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTA 36 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~ 36 (123)
..+.+.+++++.+.++...+++++|.+..
T Consensus 134 ~~v~~~~el~~al~~a~~~~~p~lIev~~ 162 (188)
T cd03371 134 YEVPSLEELVAALAKALAADGPAFIEVKV 162 (188)
T ss_pred EecCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 35667777877777776667777777664
No 388
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=34.26 E-value=39 Score=17.63 Aligned_cols=40 Identities=20% Similarity=0.463 Sum_probs=26.0
Q ss_pred cCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccE
Q 033251 36 ASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 36 ~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
.+.||.|.... +.+++.++.+ .+|.+ +.++++++++ ..|-
T Consensus 15 ~~~CP~Cgs~~-----~T~~W~G~vi-I~dPe-~S~IAk~l~i-~~pG 54 (61)
T PRK08351 15 EDRCPVCGSRD-----LSDEWFDLVI-IIDVE-NSRIAKKLGA-KVPG 54 (61)
T ss_pred CCcCCCCcCCc-----cccccccEEE-EeCCc-HhHHHHHhCC-CCCC
Confidence 45799998843 5556656333 55555 4588899998 5553
No 389
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=33.60 E-value=1.2e+02 Score=21.43 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=32.0
Q ss_pred hhcCCEEEEEEEcCCChhhhhh-hHHHHHHHhhCCC-eEEEEEeccc
Q 033251 24 IAAKKLIVVDFTASWCPPCKLM-SPILSELAKKLPA-VIFLKVDVDE 68 (123)
Q Consensus 24 ~~~~k~~vv~f~~~~C~~C~~~-~~~~~~~~~~~~~-v~~~~i~~~~ 68 (123)
+..+|.+++==|.-+|+.-..+ ...+.++.+.+|+ +.+.++++..
T Consensus 71 l~p~k~vilp~~~a~C~~a~~~~~~~i~~lk~~~Pda~vvah~n~~a 117 (310)
T TIGR00550 71 LNPEKTVLMPDLGAGCSMADMCPPEEFKKLKERHPDAFVVTYVNTTA 117 (310)
T ss_pred hCCCCEEEccCCCCCCccccccCHHHHHHHHHHCCCCEEEEECCCCH
Confidence 3566776544477788777766 5668999999987 5577777753
No 390
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.71 E-value=64 Score=20.28 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=18.3
Q ss_pred hhHHHHHHhhhhcCCEEEEEEEcCCChh
Q 033251 14 ESWNEQLQKGIAAKKLIVVDFTASWCPP 41 (123)
Q Consensus 14 ~~~~~~~~~~~~~~k~~vv~f~~~~C~~ 41 (123)
..+.+.+ .+.+|++++.|.+-|--+
T Consensus 123 ~~lr~~I---~e~dkp~LilfGTGwGlp 147 (190)
T COG4752 123 SWLRNEI---QERDKPWLILFGTGWGLP 147 (190)
T ss_pred HHHHHHH---hhcCCcEEEEecCCCCCC
Confidence 3444444 468999999999998654
No 391
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=32.37 E-value=74 Score=21.72 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=26.6
Q ss_pred chhHHHhcCcccccEEEEecCCeEEEEEccCCHHHHHHHHHHHh
Q 033251 69 LKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHA 112 (123)
Q Consensus 69 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~ 112 (123)
.+++.++++|.-+|-.+.+.+ +........+.+++.+.+++.-
T Consensus 13 ~~~~~~~~~i~vvPl~i~~~~-~~y~D~~~i~~~efy~~l~~~~ 55 (280)
T PF02645_consen 13 PPELAEEYGIYVVPLNIIIDG-KEYRDGVDISPEEFYEKLRESG 55 (280)
T ss_dssp -HHHHHHTTEEEE--EEEETT-EEEETTTTSCHHHHHHHHHHTT
T ss_pred CHHHHHhCCeEEEeEEEecCC-eEEecCCCCCHHHHHHHHHhcC
Confidence 357789999999998777766 2222211237888888886543
No 392
>COG1839 Uncharacterized conserved protein [Function unknown]
Probab=32.29 E-value=1.3e+02 Score=18.81 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=27.5
Q ss_pred cccccEEEEe-----cCCeEEEEEccCCHHHHHHHHHHHhccc
Q 033251 78 VEAMPTFVLT-----KEGKVLERIVGAKKDELQLAVEKHATTV 115 (123)
Q Consensus 78 i~~~Pt~~~~-----~~g~~~~~~~g~~~~~l~~~l~~~~~~~ 115 (123)
++++|.+-+- -.|..+-++.|.+.+..+..++..+.-+
T Consensus 37 vt~vP~~kfgiAf~EAsg~rLvR~~GND~eL~~lA~ena~~I~ 79 (162)
T COG1839 37 VTAVPGLKFGIAFNEASGPRLVRYTGNDEELVKLAIENALKIG 79 (162)
T ss_pred HhcCCCceEEEEeecccCCeeEEecCCcHHHHHHHHHHHHHhc
Confidence 5678853332 3688899999999888888877776543
No 393
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=32.07 E-value=78 Score=16.18 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=29.1
Q ss_pred EEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccc--hhHHHhcCcccccEEEEecCCeEE
Q 033251 34 FTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL--KSVAEEWAVEAMPTFVLTKEGKVL 93 (123)
Q Consensus 34 f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~--~~~~~~~~i~~~Pt~~~~~~g~~~ 93 (123)
++.+.|+.|+..+=.++...-.| ....++.... .++........+|+++. +|..+
T Consensus 4 y~~~~~~~~~~v~~~l~~~gi~~---e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l 60 (72)
T cd03039 4 TYFNIRGRGEPIRLLLADAGVEY---EDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKKL 60 (72)
T ss_pred EEEcCcchHHHHHHHHHHCCCCc---EEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEEE
Confidence 34567888887766665554333 3333343222 22333344567998864 45443
No 394
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.58 E-value=1.1e+02 Score=19.98 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=27.8
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEE
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKV 64 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i 64 (123)
++.+.+|...-.+.|--|+.....+.++..-.. ++.++.+
T Consensus 49 ~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~v 90 (197)
T KOG4498|consen 49 KERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAV 90 (197)
T ss_pred hcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 567777777778999999999888877743333 4444433
No 395
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=31.19 E-value=1.9e+02 Score=20.27 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=35.6
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHh----cCcccccEEEEecC
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEE----WAVEAMPTFVLTKE 89 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~----~~i~~~Pt~~~~~~ 89 (123)
.++.-+-.++.|--..--..+..+.++.++-..+.-+.+|.=...++..+ -.-.++|++++...
T Consensus 116 ~g~Tr~~vy~qPp~~~~p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 116 KGVTRATVYFQPPKDGQPHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred cCCceEEEEeCCCCCCCCCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 45444545555422222344555666666656677777776555544333 34567888777653
No 396
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=31.17 E-value=1.2e+02 Score=22.52 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=28.0
Q ss_pred CcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCC
Q 033251 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASW 38 (123)
Q Consensus 5 ~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~ 38 (123)
|.+..|-+..++++.++....+.||..++.++..
T Consensus 338 GPiLPIi~v~~l~Eai~~In~~eKPLa~Y~Fs~n 371 (477)
T KOG2456|consen 338 GPILPIITVQSLDEAINFINEREKPLALYIFSNN 371 (477)
T ss_pred cCccceeEhhhHHHHHHHHhcCCCceEEEEecCC
Confidence 4556677788899888877789999999999875
No 397
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=30.88 E-value=81 Score=20.47 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=18.6
Q ss_pred CChhhhhhhHHHHHHHhhCCCeEEEEEeccc
Q 033251 38 WCPPCKLMSPILSELAKKLPAVIFLKVDVDE 68 (123)
Q Consensus 38 ~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~ 68 (123)
-|+.|..++.. +++.-|++.++..+-..
T Consensus 156 PCGaC~ewL~K---IAe~np~f~v~mFd~t~ 183 (193)
T PF14421_consen 156 PCGACKEWLRK---IAEANPDFRVYMFDDTR 183 (193)
T ss_pred cchHHHHHHHH---HHHhCCCeEEEEecCCC
Confidence 47888777654 45566778877776543
No 398
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=30.84 E-value=95 Score=23.75 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=28.7
Q ss_pred CcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCC
Q 033251 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASW 38 (123)
Q Consensus 5 ~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~ 38 (123)
..-..+++.++++..+.+++..++++||.+--+-
T Consensus 499 ~~g~~v~~~~el~~al~~al~~~~p~lidv~id~ 532 (550)
T COG0028 499 AKGIRVETPEELEEALEEALASDGPVLIDVVVDP 532 (550)
T ss_pred CeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 4456788899999999999999999999987653
No 399
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=30.23 E-value=83 Score=15.92 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=26.3
Q ss_pred EEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc----cchhHHHhcCcccccEEEE
Q 033251 34 FTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD----ELKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 34 f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~----~~~~~~~~~~i~~~Pt~~~ 86 (123)
|+...|+.|.+.+-.++...- .+....++.. ..+++.+......+|++..
T Consensus 4 ~~~~~~~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03042 4 YSYFRSSASYRVRIALNLKGL---DYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI 57 (73)
T ss_pred ecCCCCcchHHHHHHHHHcCC---CCeEEEecCccCCcCChHHHHhCCCCCCCEEEE
Confidence 334556666655444444321 2444455542 2345555556778998864
No 400
>PRK05858 hypothetical protein; Provisional
Probab=30.09 E-value=1e+02 Score=23.23 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=26.7
Q ss_pred CcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 5 ~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
..-..+++.+++...+.++...++++||....+
T Consensus 498 ~~~~~v~~~~eL~~al~~a~~~~~p~lIev~~~ 530 (542)
T PRK05858 498 GHGELVTVPAELGPALERAFASGVPYLVNVLTD 530 (542)
T ss_pred CeEEEeCCHHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 344678888999999988888889999988753
No 401
>PRK13815 ribosome-binding factor A; Provisional
Probab=30.05 E-value=1.3e+02 Score=18.00 Aligned_cols=41 Identities=5% Similarity=0.163 Sum_probs=25.7
Q ss_pred hHHHhcCcccccEEEEecCCeEEEEEccC-CHHHHHHHHHHHhcccccc
Q 033251 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKHATTVENA 118 (123)
Q Consensus 71 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~~~~~ 118 (123)
.+.+++++..+|.+.|+.+. .. ....+.+.|++.-....++
T Consensus 76 ~l~~~l~lR~~PeL~F~~D~-------s~e~~~~I~~lL~~i~~~~~~~ 117 (122)
T PRK13815 76 ELGKVLRMRYAPELIFKYDE-------SQEYGNRIDSLLKEIGTEHDGD 117 (122)
T ss_pred HHHHhCCCeECCEEEEEECC-------ChHHHHHHHHHHHHHHhccCCC
Confidence 45677889999998887552 22 3456666666655444433
No 402
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=29.95 E-value=98 Score=16.68 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=17.9
Q ss_pred cccEEEEecCCeEEEEEccCCHHHHHHHHHH
Q 033251 80 AMPTFVLTKEGKVLERIVGAKKDELQLAVEK 110 (123)
Q Consensus 80 ~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~ 110 (123)
.=|.+++ +|+ .+.+.+++++.+.+++
T Consensus 54 ~gP~~~v--~~~---~~~~~~~e~i~~il~~ 79 (80)
T cd03081 54 CSPAAMI--DGE---VHGRVDPEKFDALLAE 79 (80)
T ss_pred CCCEEEE--CCE---EECCCCHHHHHHHHHc
Confidence 4687776 443 4556688888888765
No 403
>PHA02131 hypothetical protein
Probab=29.95 E-value=86 Score=16.02 Aligned_cols=28 Identities=7% Similarity=0.243 Sum_probs=20.4
Q ss_pred cccccEEEEecCCeEEEEEccCCHHHHH
Q 033251 78 VEAMPTFVLTKEGKVLERIVGAKKDELQ 105 (123)
Q Consensus 78 i~~~Pt~~~~~~g~~~~~~~g~~~~~l~ 105 (123)
-.++-.++.|++|++.......+..+++
T Consensus 26 ~~g~~c~imfk~~~v~dctfk~dtaqfr 53 (70)
T PHA02131 26 RFGISCWIMFKNDQVIDCTFKNDTAQFR 53 (70)
T ss_pred ecceEEEEEEcCCCEEEeeecCcHHHHh
Confidence 3467789999999999876666554444
No 404
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=29.37 E-value=1.1e+02 Score=24.45 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=23.9
Q ss_pred CCChhhhhh---------hHHHHHHHhhCCCeEEEEEecccc
Q 033251 37 SWCPPCKLM---------SPILSELAKKLPAVIFLKVDVDEL 69 (123)
Q Consensus 37 ~~C~~C~~~---------~~~~~~~~~~~~~v~~~~i~~~~~ 69 (123)
..||.|-.. ...-+++.+.+|+..++++|.|..
T Consensus 476 ~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt 517 (730)
T COG1198 476 QSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTT 517 (730)
T ss_pred CCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccc
Confidence 345666544 345578888899999999999864
No 405
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.29 E-value=1.8e+02 Score=19.62 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=28.8
Q ss_pred cCCEEEEEEE-----cCCChhhhhhhHHHHHHHhhCC--CeEEEEEecc
Q 033251 26 AKKLIVVDFT-----ASWCPPCKLMSPILSELAKKLP--AVIFLKVDVD 67 (123)
Q Consensus 26 ~~k~~vv~f~-----~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~~~ 67 (123)
..+.+|..|+ ...|+.|-.+...+.-...... ++.++.+...
T Consensus 73 rsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA 121 (247)
T COG4312 73 RSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA 121 (247)
T ss_pred CceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC
Confidence 4555555553 3479999999999965555543 6888887763
No 406
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.14 E-value=69 Score=23.91 Aligned_cols=34 Identities=26% Similarity=0.553 Sum_probs=24.0
Q ss_pred CCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhh
Q 033251 4 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLM 45 (123)
Q Consensus 4 ~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~ 45 (123)
+..++.+++.++|...+ .+++.+ .+|||+.-...
T Consensus 464 ds~~~~v~~~~eF~~aL----~~k~ii----laPwcg~~ecE 497 (551)
T KOG4163|consen 464 DSHIVKVNTWEEFVKAL----DQKKII----LAPWCGEIECE 497 (551)
T ss_pred hhheeeeeeHHHHHHHh----ccCCEE----EccccCcHHHH
Confidence 45678899999999988 445544 47999764433
No 407
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=28.42 E-value=1.1e+02 Score=17.20 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=25.5
Q ss_pred hHHHHHHHhhCCCeEEEEEecccchhHHHhcC-cccccEEEEecC
Q 033251 46 SPILSELAKKLPAVIFLKVDVDELKSVAEEWA-VEAMPTFVLTKE 89 (123)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~-i~~~Pt~~~~~~ 89 (123)
...+.+++..... .+=+.++.++.+++. +.++|.+.+-++
T Consensus 54 ddci~~~~~~~~~----~~VaT~D~~Lr~~lr~~~GvPvi~l~~~ 94 (101)
T PF04900_consen 54 DDCILDLAGKNNK----YIVATQDKELRRRLRKIPGVPVIYLRRN 94 (101)
T ss_pred HHHHHHHhccCCe----EEEEecCHHHHHHHhcCCCCCEEEEECC
Confidence 4444555543222 444556678888888 999999877644
No 408
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=28.29 E-value=2.2e+02 Score=20.07 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=14.4
Q ss_pred CCeEEEEEccC-CHHHHHHHHHHHh
Q 033251 89 EGKVLERIVGA-KKDELQLAVEKHA 112 (123)
Q Consensus 89 ~g~~~~~~~g~-~~~~l~~~l~~~~ 112 (123)
+-+.+....|. +++.+.+.+...+
T Consensus 255 ~~~~VGitaGASTP~~li~eV~~~l 279 (298)
T PRK01045 255 GVKTVGVTAGASAPEWLVQEVIARL 279 (298)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHH
Confidence 44667777888 5665555444443
No 409
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=28.28 E-value=1.4e+02 Score=17.96 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=15.2
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLP 57 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~ 57 (123)
..+.+++.+.+...-. ...++++.+..+
T Consensus 50 ~~d~vvi~lGtNd~~~----~~nl~~ii~~~~ 77 (150)
T cd01840 50 LRKTVVIGLGTNGPFT----KDQLDELLDALG 77 (150)
T ss_pred CCCeEEEEecCCCCCC----HHHHHHHHHHcC
Confidence 3466777776666533 444444444444
No 410
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=28.09 E-value=1.2e+02 Score=21.21 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=36.8
Q ss_pred EEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHH----HHHHHhhCCCeEEEEEecc
Q 033251 9 SCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPI----LSELAKKLPAVIFLKVDVD 67 (123)
Q Consensus 9 ~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~----~~~~~~~~~~v~~~~i~~~ 67 (123)
.+.+..++.+.+.++...+.+.+|.++++ |+.-..+.+. +.+++-+-.-+.++.++-.
T Consensus 183 ~~~~~~~l~~~i~~A~~~~Gps~I~v~sP-C~~~~~~~~~~~~~~~klAvetg~~plye~~~g 244 (299)
T PRK11865 183 SIGYPEDFMEKVKKAKEVEGPAYIQVLQP-CPTGWGFPPEKTIEIGRLAVETGYWPLFEIENG 244 (299)
T ss_pred eCCCHHHHHHHHHHHHhCCCCEEEEEECC-CCCCCCCCHHHHHHHHHHHHhcCceeEEEEECC
Confidence 34567788888888888889999999987 4443332222 2344444333677766643
No 411
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=27.95 E-value=2e+02 Score=21.71 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=31.0
Q ss_pred HHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc
Q 033251 19 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE 68 (123)
Q Consensus 19 ~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~ 68 (123)
.+.+...-+||.++..=+ .-|+.......-+++.++| ++.+..+||.+
T Consensus 172 vI~ELk~igKPFvillNs-~~P~s~et~~L~~eL~ekY-~vpVlpvnc~~ 219 (492)
T PF09547_consen 172 VIEELKEIGKPFVILLNS-TKPYSEETQELAEELEEKY-DVPVLPVNCEQ 219 (492)
T ss_pred HHHHHHHhCCCEEEEEeC-CCCCCHHHHHHHHHHHHHh-CCcEEEeehHH
Confidence 455555678888776653 2345555555556666776 78888888865
No 412
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=27.92 E-value=99 Score=16.05 Aligned_cols=51 Identities=14% Similarity=0.002 Sum_probs=27.2
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEeccc---chhHHHhcCcccccEEEEecCCeE
Q 033251 37 SWCPPCKLMSPILSELAKKLPAVIFLKVDVDE---LKSVAEEWAVEAMPTFVLTKEGKV 92 (123)
Q Consensus 37 ~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~---~~~~~~~~~i~~~Pt~~~~~~g~~ 92 (123)
..|+.|++.+=.++...-. .....++... .+++.+......+|++.. +|..
T Consensus 8 ~~s~~s~~v~~~L~~~gl~---~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~ 61 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIP---FEEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIV 61 (73)
T ss_pred CCCHHHHHHHHHHHHcCCC---CEEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEE
Confidence 3556666655555444332 3344444432 245555555778999864 4543
No 413
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=27.92 E-value=17 Score=25.03 Aligned_cols=6 Identities=50% Similarity=1.907 Sum_probs=3.3
Q ss_pred CChhhh
Q 033251 38 WCPPCK 43 (123)
Q Consensus 38 ~C~~C~ 43 (123)
|||.|+
T Consensus 267 ~CP~CQ 272 (273)
T COG0266 267 YCPVCQ 272 (273)
T ss_pred eCCCCC
Confidence 555554
No 414
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.90 E-value=1.2e+02 Score=23.35 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=22.4
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
.-..+++.++++..+..+...++|.||.+.-+
T Consensus 523 ~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~ 554 (595)
T PRK09107 523 VGIRCEKPGDLDDAIQEMIDVDKPVIFDCRVA 554 (595)
T ss_pred eEEEECCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 34566777777777777767777777777653
No 415
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.85 E-value=2.3e+02 Score=20.99 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=26.3
Q ss_pred EEEEEEEcCCChhhhhh--hHHHHHHHhhC--CCeEEEEEec
Q 033251 29 LIVVDFTASWCPPCKLM--SPILSELAKKL--PAVIFLKVDV 66 (123)
Q Consensus 29 ~~vv~f~~~~C~~C~~~--~~~~~~~~~~~--~~v~~~~i~~ 66 (123)
-....|.+..|++|+.- -..+.++.... +++.++.+|.
T Consensus 71 ~n~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~ 112 (420)
T COG3581 71 ENDAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNS 112 (420)
T ss_pred cccEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeec
Confidence 34455667799999954 45556665553 5799999984
No 416
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=27.30 E-value=72 Score=21.03 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=22.1
Q ss_pred ehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC
Q 033251 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA 58 (123)
Q Consensus 12 ~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~ 58 (123)
+.++|+..+ ..++|++..|.+ .-..+.+|.-..++
T Consensus 88 sd~~Fd~lF----T~DkPViFafHG--------Yp~~i~~L~~~R~n 122 (203)
T PF09363_consen 88 SDEEFDALF----TKDKPVIFAFHG--------YPWLIHRLLFGRPN 122 (203)
T ss_dssp -HHHHHHHH-----SSS-EEEEESS--------EHHHHHHHTTTSTT
T ss_pred CHHHHHHhc----CCCCCEEEEcCC--------CHHHHHHHhcCCCC
Confidence 456788887 689999999954 34456666555444
No 417
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.00 E-value=1.3e+02 Score=17.25 Aligned_cols=71 Identities=17% Similarity=0.359 Sum_probs=40.4
Q ss_pred CCChhhhhhh---HH--H--HHHHhhCCC--eEEEEEecccch------hHHHhcC--cccccEEEEecCCeEEEEEccC
Q 033251 37 SWCPPCKLMS---PI--L--SELAKKLPA--VIFLKVDVDELK------SVAEEWA--VEAMPTFVLTKEGKVLERIVGA 99 (123)
Q Consensus 37 ~~C~~C~~~~---~~--~--~~~~~~~~~--v~~~~i~~~~~~------~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~ 99 (123)
.-|..|..+- .. | ..+.++||+ +.+-+||+.+.+ .++.+.. -.-.|.+++ +++.+.. |.
T Consensus 14 ~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivv--edeiVae--Gn 89 (106)
T COG4837 14 VICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVV--EDEIVAE--GN 89 (106)
T ss_pred hhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEE--cceEeec--CC
Confidence 4798898652 11 1 334667885 888899985322 2233322 234777666 5555543 55
Q ss_pred -CHHHHHHHHHHH
Q 033251 100 -KKDELQLAVEKH 111 (123)
Q Consensus 100 -~~~~l~~~l~~~ 111 (123)
...++-+.+.+.
T Consensus 90 prlKdiy~~m~d~ 102 (106)
T COG4837 90 PRLKDIYRVMDDK 102 (106)
T ss_pred chHHHHHHHHHHh
Confidence 566666665543
No 418
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=26.77 E-value=2.4e+02 Score=20.21 Aligned_cols=81 Identities=10% Similarity=-0.025 Sum_probs=47.3
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhhCC-CeEEEEEe-cccchhHHHhcCcccccEEEEecCCeEEEEEccC-CH---HH
Q 033251 30 IVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVD-VDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KK---DE 103 (123)
Q Consensus 30 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~-~v~~~~i~-~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~---~~ 103 (123)
.+|.++.....+-..+...+.+++++.. .+++ .+. ...... .-.+.-.++||+.+--.-+.++..... +. +.
T Consensus 252 p~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~-~~~~gGtDa~-~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~~ 329 (350)
T TIGR03107 252 TLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQY-YVAKGGTDAG-AAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDFLA 329 (350)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHcCCCcEE-ecCCCCchHH-HHHHhCCCCcEEEEccCcccccChhheeeHHHHHH
Confidence 3345777788888999999999999964 3554 222 112111 224566789997776544444443343 44 34
Q ss_pred HHHHHHHHh
Q 033251 104 LQLAVEKHA 112 (123)
Q Consensus 104 l~~~l~~~~ 112 (123)
..+++.+++
T Consensus 330 ~~~Ll~~~i 338 (350)
T TIGR03107 330 AQAFLQAIV 338 (350)
T ss_pred HHHHHHHHH
Confidence 444444444
No 419
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=26.61 E-value=1.3e+02 Score=21.09 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=27.6
Q ss_pred EEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhh
Q 033251 9 SCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCK 43 (123)
Q Consensus 9 ~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~ 43 (123)
.+.+.+++.+.+.++...+.+.+|.+..+ |+...
T Consensus 175 ~v~~~~eL~~ai~~A~~~~GpalIeV~~~-C~~~~ 208 (301)
T PRK05778 175 FAGDVKQLVELIKKAISHKGFAFIDVLSP-CVTFN 208 (301)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEEcCC-CCCCC
Confidence 56788999999999988999999999765 55543
No 420
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=26.58 E-value=1.2e+02 Score=21.18 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=27.9
Q ss_pred EeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhh
Q 033251 10 CHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLM 45 (123)
Q Consensus 10 i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~ 45 (123)
..+.+++.+.+.+++..+.+.+|.+..+ |+....+
T Consensus 159 ~~~~~eL~~ai~~Al~~~GpslIeV~~p-C~t~n~~ 193 (287)
T TIGR02177 159 SGDVAHLKEIIKEAINHKGYALVDILQP-CVTYNKI 193 (287)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEeCC-CCCCCcc
Confidence 3677899999999999999999999866 5655443
No 421
>PF14430 Imm1: Immunity protein Imm1
Probab=26.53 E-value=1.5e+02 Score=17.60 Aligned_cols=106 Identities=13% Similarity=-0.008 Sum_probs=57.4
Q ss_pred CCcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeE-EEEEecccchhHHHhcCc-ccc
Q 033251 4 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVI-FLKVDVDELKSVAEEWAV-EAM 81 (123)
Q Consensus 4 ~~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~-~~~i~~~~~~~~~~~~~i-~~~ 81 (123)
.+....+.+.+++++.|......+...+..++...-+.- .|.+.-.. ..+.. +..++ +........-.- .+.
T Consensus 9 ~~~~~~v~t~~evd~~l~~l~~~~~~~~~~l~~~~~~~~---~~~l~vgv--~g~~g~l~~~~-~d~~~~~~~~~~~~~~ 82 (127)
T PF14430_consen 9 QGHPVEVATPAEVDELLDRLAGPGGPQVVELWIDGDPWG---YPYLGVGV--NGDYGVLHYFG-DDDGFWSSGDPNPPGD 82 (127)
T ss_pred CCCeeEeCCHHHHHHHHHHHhccCCCceEEEEeCCCCCC---CceEEEEe--cCCEEEEEEEe-CCCCeEecCCCCCCCc
Confidence 466788999999999998876677676778887654321 11111111 11211 22222 111111000001 223
Q ss_pred cEEEEecCCeEEEEEccCCHHHHHHHHHHHhccc
Q 033251 82 PTFVLTKEGKVLERIVGAKKDELQLAVEKHATTV 115 (123)
Q Consensus 82 Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~~~ 115 (123)
+.+.+..++.........+.+.+++.+.+.+...
T Consensus 83 ~~~~~~~~~~e~Pa~~~vpl~~~~~A~~eF~~tg 116 (127)
T PF14430_consen 83 VEYDLNNGGTEFPADSEVPLETARQALREFLATG 116 (127)
T ss_pred eeEEecCCCcccCCCceecHHHHHHHHHHHHHhC
Confidence 4455555666655544447899999999888654
No 422
>PF10120 Aldolase_2: Putative aldolase; InterPro: IPR019293 This family of proteins have no known function. In many cases they represent a domain C-terminal to a phosphomethylpyrimidine kinase domain or a HTH DNA-binding domain.; PDB: 2PHP_A 2PB9_A.
Probab=26.49 E-value=1.4e+02 Score=19.02 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=30.9
Q ss_pred CeEEEEEecccchhH-----------HHhcC-cccccEEEEec---CCeEEEEEccCCHHHHHHHHHH
Q 033251 58 AVIFLKVDVDELKSV-----------AEEWA-VEAMPTFVLTK---EGKVLERIVGAKKDELQLAVEK 110 (123)
Q Consensus 58 ~v~~~~i~~~~~~~~-----------~~~~~-i~~~Pt~~~~~---~g~~~~~~~g~~~~~l~~~l~~ 110 (123)
++.+..+|....++- ...+. ...+|-+++.. +.+.+.+..|.++.++.+.+.+
T Consensus 102 g~~v~~~dr~~ep~~~~eg~tm~w~i~~a~~~~~~~PdvIyd~G~~GkEp~i~v~g~~~~evv~kv~~ 169 (170)
T PF10120_consen 102 GLKVSEFDRSEEPEEVKEGGTMPWGIEEAFRELGEVPDVIYDRGGWGKEPMIYVFGRDPVEVVEKVLK 169 (170)
T ss_dssp TSEEEE--CCCS-CCCHTT-HHHHHHHHHHHCCTS-ECEEEE--BCTB--EEEEEESSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCcccccccchHHHHHHHHHhcCCCCeEEEECCCCCcCcEEEEECCCHHHHHHHHHh
Confidence 678888887654321 12222 25789998886 3477888899998888777654
No 423
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=26.26 E-value=1e+02 Score=21.38 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=24.2
Q ss_pred EeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 10 CHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 10 i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
+.+.+++...+.+++..+.+.||.+..+
T Consensus 175 ~~~~~el~~al~~Al~~~Gp~lIev~~~ 202 (286)
T PRK11867 175 DSDVKQLTELIKAAINHKGFSFVEILQP 202 (286)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 4568899999999988899999999865
No 424
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=26.21 E-value=1.1e+02 Score=15.94 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=19.4
Q ss_pred ccccEEEEecCCeEEEEEccCCHHHHHHHHHH
Q 033251 79 EAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 110 (123)
Q Consensus 79 ~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~ 110 (123)
..=|.+++..++. .+.+.+++++.+.|++
T Consensus 48 ~~~P~v~i~~~~~---~y~~v~~~~~~~il~~ 76 (77)
T cd02980 48 GLAPVVVVYPDGV---WYGRVTPEDVEEIVEE 76 (77)
T ss_pred cCCCEEEEeCCCe---EEccCCHHHHHHHHHh
Confidence 3578888886542 3344478888887765
No 425
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=26.08 E-value=74 Score=13.99 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=8.6
Q ss_pred ccCCHHHHHHHHHH
Q 033251 97 VGAKKDELQLAVEK 110 (123)
Q Consensus 97 ~g~~~~~l~~~l~~ 110 (123)
.|.+.++++++++.
T Consensus 15 ~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 15 SGLSKEEIREFLEF 28 (30)
T ss_dssp TT--HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHh
Confidence 36677888888764
No 426
>PLN02378 glutathione S-transferase DHAR1
Probab=25.96 E-value=1.9e+02 Score=18.66 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=29.6
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEecccc-hhHHHhcCcccccEEEE
Q 033251 37 SWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL-KSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 37 ~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~-~~~~~~~~i~~~Pt~~~ 86 (123)
.+||+|++..=.++...-. +.+..+|.... +++.+-.....+|++..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~---~e~~~v~~~~~~~~~l~inP~G~VPvL~~ 65 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLT---YKIHLINLSDKPQWFLDISPQGKVPVLKI 65 (213)
T ss_pred CCCcchHHHHHHHHHcCCC---CeEEEeCcccCCHHHHHhCCCCCCCEEEE
Confidence 4599999987777555432 45556665433 34555455667998854
No 427
>PLN02470 acetolactate synthase
Probab=25.75 E-value=1.5e+02 Score=22.72 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=20.9
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
-..+++.+++...+..+...+++.||.+..+
T Consensus 527 ~~~v~~~~el~~al~~a~~~~~p~lieV~i~ 557 (585)
T PLN02470 527 AARVTRKSDLREAIQKMLDTPGPYLLDVIVP 557 (585)
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 3556667777777776666677777777654
No 428
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=25.56 E-value=2.1e+02 Score=20.31 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=30.0
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCC--CeEEEEEe
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLP--AVIFLKVD 65 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~--~v~~~~i~ 65 (123)
.|||+++.|-...=+.+..+...+++.+++.. ++.++.+.
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~ 198 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQ 198 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEe
Confidence 68999877776666888899999988888854 45555544
No 429
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=25.36 E-value=27 Score=21.51 Aligned_cols=14 Identities=36% Similarity=0.857 Sum_probs=11.5
Q ss_pred CCChhhhhhhHHHH
Q 033251 37 SWCPPCKLMSPILS 50 (123)
Q Consensus 37 ~~C~~C~~~~~~~~ 50 (123)
-.||+|++..|.+.
T Consensus 7 i~CPhCRq~ipALt 20 (161)
T PF09654_consen 7 IQCPHCRQTIPALT 20 (161)
T ss_pred CcCchhhcccchhe
Confidence 37999999988773
No 430
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=25.36 E-value=1.7e+02 Score=19.90 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=26.9
Q ss_pred chhHHHhcCcccccEEEEecCCeEEEEEccCCHHHHHHHHHH
Q 033251 69 LKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 110 (123)
Q Consensus 69 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~ 110 (123)
.++.+++++|.-+|--+.+.+ +........+.+++.+.+.+
T Consensus 12 ~~~~~~~~~I~vvPl~I~~~~-~~y~D~~~i~~~~~y~~~~~ 52 (275)
T TIGR00762 12 PPELIEEYGITVVPLTVIIDG-KTYRDGVDITPEEFYEKLKE 52 (275)
T ss_pred CHHHHHHcCCEEEEEEEEECC-EEeecCCCCCHHHHHHHHHh
Confidence 356788999999997766654 33332223467777777754
No 431
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=25.36 E-value=28 Score=21.49 Aligned_cols=14 Identities=36% Similarity=0.845 Sum_probs=11.5
Q ss_pred CCChhhhhhhHHHH
Q 033251 37 SWCPPCKLMSPILS 50 (123)
Q Consensus 37 ~~C~~C~~~~~~~~ 50 (123)
-.||+|++..|.+.
T Consensus 10 i~CPhCRQ~ipALt 23 (163)
T TIGR02652 10 IRCPHCRQNIPALT 23 (163)
T ss_pred CcCchhhcccchhe
Confidence 37999999988773
No 432
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=25.29 E-value=1.6e+02 Score=17.48 Aligned_cols=87 Identities=14% Similarity=0.221 Sum_probs=51.6
Q ss_pred cCCEEEEEEEcC-CChhhhhhhHHHHHHHhhC----C----C--eEEEEEecccchhHHHhc-Cc-ccccEEEEec---C
Q 033251 26 AKKLIVVDFTAS-WCPPCKLMSPILSELAKKL----P----A--VIFLKVDVDELKSVAEEW-AV-EAMPTFVLTK---E 89 (123)
Q Consensus 26 ~~k~~vv~f~~~-~C~~C~~~~~~~~~~~~~~----~----~--v~~~~i~~~~~~~~~~~~-~i-~~~Pt~~~~~---~ 89 (123)
+..|.+|+|... .-+.-...++.++.+++.+ . + +.|+.---++..+..+.| +. ...|-+++.. .
T Consensus 13 n~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip~r 92 (116)
T cd03071 13 NEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSAR 92 (116)
T ss_pred cCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEecccc
Confidence 566778888743 3345677777777666554 1 1 333332223334445555 33 3477766662 4
Q ss_pred CeEEEEEccCCHHHHHHHHHHHh
Q 033251 90 GKVLERIVGAKKDELQLAVEKHA 112 (123)
Q Consensus 90 g~~~~~~~g~~~~~l~~~l~~~~ 112 (123)
++.+......+.+.+.+++++++
T Consensus 93 ~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 93 AKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ceEeCchHhcCHHHHHHHHHHhh
Confidence 45555555558999999998875
No 433
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=25.29 E-value=1.3e+02 Score=16.60 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=19.0
Q ss_pred hHHHhcCcccccEEEEecCCeEEEE
Q 033251 71 SVAEEWAVEAMPTFVLTKEGKVLER 95 (123)
Q Consensus 71 ~~~~~~~i~~~Pt~~~~~~g~~~~~ 95 (123)
+.+..|++...+++++..+|..+..
T Consensus 29 K~~~~l~l~~~~~lvL~eDGT~Vd~ 53 (79)
T cd06538 29 KVLDALLLDCISSLVLDEDGTGVDT 53 (79)
T ss_pred HHHHHcCCCCccEEEEecCCcEEcc
Confidence 4577888866567888899988754
No 434
>PLN02402 cytidine deaminase
Probab=25.28 E-value=1.3e+02 Score=21.16 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=16.3
Q ss_pred CEEEEEEEcCCChhhhhhhHHH
Q 033251 28 KLIVVDFTASWCPPCKLMSPIL 49 (123)
Q Consensus 28 k~~vv~f~~~~C~~C~~~~~~~ 49 (123)
+..-|.+..+=|+.|+++...+
T Consensus 93 ~i~~iaV~~sPCG~CRQ~l~Ef 114 (303)
T PLN02402 93 HLKYVAVSAAPCGHCRQFFQEI 114 (303)
T ss_pred ceEEEEEEeCCCcccHHHHHHh
Confidence 4566666778999999985554
No 435
>PF10114 PocR: Sensory domain found in PocR; InterPro: IPR018771 This entry is thought to act as a sensory domain in histidine kinases catalysing the reaction: ATP + protein L-histidine = ADP + protein N- phospho-L-histidine.
Probab=25.15 E-value=58 Score=20.17 Aligned_cols=32 Identities=13% Similarity=0.408 Sum_probs=21.2
Q ss_pred ccchhHHHhc-CcccccEEEEecCCeEEEEEcc
Q 033251 67 DELKSVAEEW-AVEAMPTFVLTKEGKVLERIVG 98 (123)
Q Consensus 67 ~~~~~~~~~~-~i~~~Pt~~~~~~g~~~~~~~g 98 (123)
+.-.++.+.| .++++|..++..+|+++....+
T Consensus 8 ~~lq~i~~~fs~~tgl~~~i~d~~G~~l~~~~~ 40 (173)
T PF10114_consen 8 EELQEIQDSFSKATGLSIVIVDPDGNPLTQPSN 40 (173)
T ss_pred HHHHHHHHHHHHHHCCcEEEEeCCCCEEeeCCC
Confidence 3334444444 4778899999899988855443
No 436
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=25.12 E-value=1.1e+02 Score=15.76 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=28.6
Q ss_pred EEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccch-hHHHhcCcccccEEEEecCCeE
Q 033251 34 FTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELK-SVAEEWAVEAMPTFVLTKEGKV 92 (123)
Q Consensus 34 f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~-~~~~~~~i~~~Pt~~~~~~g~~ 92 (123)
+|.+-|+.|...+-.+....-. .....++.+... ++........+|++.. +|..
T Consensus 5 y~~~~~~~~~~v~~~L~~~~i~---~e~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 59 (73)
T cd03076 5 TYFPVRGRAEAIRLLLADQGIS---WEEERVTYEEWQESLKPKMLFGQLPCFKD--GDLT 59 (73)
T ss_pred EEeCCcchHHHHHHHHHHcCCC---CEEEEecHHHhhhhhhccCCCCCCCEEEE--CCEE
Confidence 4556688888776666655433 333444433222 2222233456898854 4544
No 437
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=25.10 E-value=1.3e+02 Score=16.65 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=18.9
Q ss_pred hHHHhcCcccccEEEEecCCeEEEE
Q 033251 71 SVAEEWAVEAMPTFVLTKEGKVLER 95 (123)
Q Consensus 71 ~~~~~~~i~~~Pt~~~~~~g~~~~~ 95 (123)
+.++.+++...+++++..+|..+..
T Consensus 29 K~~~~L~~~~~~~lvLeeDGT~Vd~ 53 (81)
T cd06537 29 KALETLLLSGVLTLVLEEDGTAVDS 53 (81)
T ss_pred HHHHHhCCCCceEEEEecCCCEEcc
Confidence 3466788866678999999988854
No 438
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=25.07 E-value=1.3e+02 Score=19.52 Aligned_cols=29 Identities=10% Similarity=0.468 Sum_probs=17.7
Q ss_pred CeEEEEEecccchhHHHhcCcccccEEEEecC
Q 033251 58 AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89 (123)
Q Consensus 58 ~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~ 89 (123)
++.|.-.|+-.-..+ |.-++.|.+.+++.
T Consensus 77 GIt~aGFNivDi~~l---~~~tg~PVi~V~~k 105 (185)
T COG1628 77 GITFAGFNIVDIEAL---YKETGLPVIVVYRK 105 (185)
T ss_pred CeeeccceEecHHHH---HHhhCCcEEEEEec
Confidence 455555555444444 66678899888754
No 439
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=25.03 E-value=1.3e+02 Score=21.53 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=34.0
Q ss_pred ehhhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEec
Q 033251 12 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDV 66 (123)
Q Consensus 12 ~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~ 66 (123)
+.+++.+.+......+.-.+ . .....+...+++++.++|++.|+.+|.
T Consensus 82 ~~~~~~~~~~~~a~~g~~lI-~------~~gf~~~d~~~~va~~~Pd~~F~iid~ 129 (345)
T COG1744 82 SEADYERALRALAEDGYDLI-F------GTGFAFSDALEKVAAEYPDVKFVIIDG 129 (345)
T ss_pred chhHHHHHHHHHHhcCCCEE-E------EeccchhhHHHHHHHHCCCCEEEEecC
Confidence 35778888776544555222 1 123567788899999999999999987
No 440
>TIGR03414 ABC_choline_bnd choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling (PubMed:16930487) vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins.
Probab=24.87 E-value=1.5e+02 Score=20.48 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=19.6
Q ss_pred hhhHHHHHHhhhhcCCEEEEEEEcCC
Q 033251 13 VESWNEQLQKGIAAKKLIVVDFTASW 38 (123)
Q Consensus 13 ~~~~~~~~~~~~~~~k~~vv~f~~~~ 38 (123)
...+-..+..+..+++++|+..|+|.
T Consensus 157 ~~a~~a~~~~A~~~~e~~v~~~w~P~ 182 (290)
T TIGR03414 157 EAGMLAQVARAVKRKEWVVFLGWEPH 182 (290)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 34444556777789999999999874
No 441
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=24.52 E-value=2.1e+02 Score=19.56 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=30.0
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEecccc-hhHHHhcCcccccEEEE
Q 033251 37 SWCPPCKLMSPILSELAKKLPAVIFLKVDVDEL-KSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 37 ~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~-~~~~~~~~i~~~Pt~~~ 86 (123)
.+||+|++.+-.+++..-. +.+..+|.... +++.+-.....+|++..
T Consensus 71 g~cp~s~rV~i~L~ekgi~---ye~~~vdl~~~~~~fl~iNP~GkVPvL~~ 118 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLP---YDMKLVDLTNKPEWFLKISPEGKVPVVKL 118 (265)
T ss_pred CCCcHHHHHHHHHHHcCCC---CEEEEeCcCcCCHHHHhhCCCCCCCEEEE
Confidence 4599999988777655433 45556666543 33444444567999875
No 442
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=24.49 E-value=16 Score=24.95 Aligned_cols=10 Identities=30% Similarity=1.185 Sum_probs=5.3
Q ss_pred CCChhhhhhh
Q 033251 37 SWCPPCKLMS 46 (123)
Q Consensus 37 ~~C~~C~~~~ 46 (123)
-|||.|+...
T Consensus 256 y~Cp~CQ~~~ 265 (269)
T PRK14811 256 HFCPQCQPLR 265 (269)
T ss_pred EECCCCcCCC
Confidence 3566665543
No 443
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=24.48 E-value=1.4e+02 Score=22.97 Aligned_cols=33 Identities=6% Similarity=0.171 Sum_probs=26.5
Q ss_pred CcEEEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 5 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 5 ~~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
..-..+++.+++...+..+...++++||.+..+
T Consensus 527 ~~g~~V~~~~el~~al~~a~~~~~p~lIeV~i~ 559 (616)
T PRK07418 527 VKGMVISERDQLKDAIAEALAHDGPVLIDVHVR 559 (616)
T ss_pred CeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 334678888999999988888888999998754
No 444
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=24.45 E-value=1.9e+02 Score=18.24 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=22.3
Q ss_pred cCCeEEEEEccCCHHHHHHHHHHHhccc
Q 033251 88 KEGKVLERIVGAKKDELQLAVEKHATTV 115 (123)
Q Consensus 88 ~~g~~~~~~~g~~~~~l~~~l~~~~~~~ 115 (123)
..|+.++...|...+.+.+.+++.++..
T Consensus 122 ~~g~~vQIIiG~~v~~i~~~i~~~l~~~ 149 (161)
T PRK09702 122 RSGDAIQVIIGLHVSQLREQLDSLINSH 149 (161)
T ss_pred EeCCeEEEEECCCHHHHHHHHHHHHccc
Confidence 3456788888999999999999988643
No 445
>PHA02151 hypothetical protein
Probab=24.42 E-value=45 Score=21.12 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=9.2
Q ss_pred EEEEEEEcCCCh
Q 033251 29 LIVVDFTASWCP 40 (123)
Q Consensus 29 ~~vv~f~~~~C~ 40 (123)
--.++||..||.
T Consensus 205 ~~~v~fy~kwct 216 (217)
T PHA02151 205 DRYVHFYKKWCT 216 (217)
T ss_pred ceEEEEehhhcc
Confidence 346889999985
No 446
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=24.31 E-value=1.5e+02 Score=22.48 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=19.9
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEc
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTA 36 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~ 36 (123)
-..+.+.++++..+.++...+++.||.+.-
T Consensus 508 ~~~v~~~~el~~al~~a~~~~~p~lIev~i 537 (554)
T TIGR03254 508 GYNVTTPDELKAALNEALASGKPTLINAVI 537 (554)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 355666777777777666667777776653
No 447
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=24.21 E-value=82 Score=15.70 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=22.4
Q ss_pred hhHHHHHHhhhhcCCEEEEEEEcCCChhhhhhhH
Q 033251 14 ESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSP 47 (123)
Q Consensus 14 ~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~~~~~ 47 (123)
+.|++... ..+...+..+....|..|....|
T Consensus 3 ~~Y~rl~~---~~~g~~va~v~~~~C~gC~~~l~ 33 (56)
T PF02591_consen 3 AEYERLRK---RKGGVAVARVEGGTCSGCHMELP 33 (56)
T ss_pred HHHHHHHh---hcCCcEEEEeeCCccCCCCEEcC
Confidence 34555553 24778899999999999986643
No 448
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=24.15 E-value=1.2e+02 Score=21.48 Aligned_cols=27 Identities=4% Similarity=-0.083 Sum_probs=21.0
Q ss_pred ehhhHHHHHHhhhhcCCEEEEEEEcCC
Q 033251 12 TVESWNEQLQKGIAAKKLIVVDFTASW 38 (123)
Q Consensus 12 ~~~~~~~~~~~~~~~~k~~vv~f~~~~ 38 (123)
+...+...+..+..+++++|++.|.|.
T Consensus 186 S~aam~a~l~~A~~~~epiv~~~W~Ph 212 (331)
T PRK11119 186 NYAALMADTIARYKEGKPVLYYTWTPY 212 (331)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecch
Confidence 344556677777899999999999984
No 449
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=24.11 E-value=1.6e+02 Score=22.33 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=22.4
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
-..+++.+++...+..+...+++.||.+.-+
T Consensus 508 ~~~v~t~~el~~al~~a~~~~~p~liev~~~ 538 (561)
T PRK06048 508 GLRVEKPSEVRPAIEEAVASDRPVVIDFIVE 538 (561)
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3567777778777777777777777777643
No 450
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=24.09 E-value=2e+02 Score=18.27 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=27.0
Q ss_pred HhcCccccc--EEEEecCCeEEEEEccC-CHHHHHHHHHHH
Q 033251 74 EEWAVEAMP--TFVLTKEGKVLERIVGA-KKDELQLAVEKH 111 (123)
Q Consensus 74 ~~~~i~~~P--t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 111 (123)
..++.+.-- .+++.+.|++.....|. +..++.+.|.-+
T Consensus 139 ~AWqL~e~~SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ll 179 (184)
T COG3054 139 NAWQLKEESSAVVVLDKDGRVKFVKEGALTQAEVQQVIDLL 179 (184)
T ss_pred hhhccccccceEEEEcCCCcEEEEecCCccHHHHHHHHHHH
Confidence 366665544 46666899999999999 777776666543
No 451
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=24.05 E-value=1.4e+02 Score=16.45 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=17.1
Q ss_pred EEEEecCCeEEEEEccCCHHHHHHHH
Q 033251 83 TFVLTKEGKVLERIVGAKKDELQLAV 108 (123)
Q Consensus 83 t~~~~~~g~~~~~~~g~~~~~l~~~l 108 (123)
+|.+|..|+++.. |.+.+.+...+
T Consensus 41 tIt~Y~SGKV~FQ--G~~Ae~~A~~~ 64 (81)
T PF11858_consen 41 TITAYKSGKVVFQ--GKNAEQEAAKW 64 (81)
T ss_dssp EEEEETTSEEEEE--STTHHHHHHTT
T ss_pred EEEEEeCCeEEEE--CCCHHHHHHHh
Confidence 5777788998877 77766655544
No 452
>PRK07524 hypothetical protein; Provisional
Probab=23.83 E-value=1.9e+02 Score=21.80 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=25.3
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEc
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTA 36 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~ 36 (123)
.-..+.+.+++++.+.++...+++.||.+..
T Consensus 498 ~~~~v~~~~el~~al~~a~~~~~p~liev~~ 528 (535)
T PRK07524 498 AAERVADLEQLQAALRAAFARPGPTLIEVDQ 528 (535)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 3466778889999998888888899998874
No 453
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=23.74 E-value=1.3e+02 Score=16.00 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=38.9
Q ss_pred EEEcCCChhhhhhhHHHHHHHhhCCC--eEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEc---cC-CHHHHHH
Q 033251 33 DFTASWCPPCKLMSPILSELAKKLPA--VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIV---GA-KKDELQL 106 (123)
Q Consensus 33 ~f~~~~C~~C~~~~~~~~~~~~~~~~--v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~---g~-~~~~l~~ 106 (123)
.-|=..|.+-.++...-+++...|++ ..+- .. ....-++-++-+|+.++.-. +. +.+++.+
T Consensus 5 IeYC~~C~~~~~a~~l~~~l~~~fp~~~~~v~-~~------------~~~~G~FEV~v~g~lI~SK~~~g~fP~~~~i~~ 71 (76)
T PF10262_consen 5 IEYCTSCGYRPRALELAQELLQTFPDRIAEVE-LS------------PGSTGAFEVTVNGELIFSKLESGRFPDPDEIVQ 71 (76)
T ss_dssp EEEETTTTCHHHHHHHHHHHHHHSTTTCSEEE-EE------------EESTT-EEEEETTEEEEEHHHHTSSS-HHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcceEEE-EE------------eccCCEEEEEEccEEEEEehhcCCCCCHHHHHH
Confidence 34445677767888888999999997 2222 10 01222466666777776322 33 6788888
Q ss_pred HHHH
Q 033251 107 AVEK 110 (123)
Q Consensus 107 ~l~~ 110 (123)
.|++
T Consensus 72 ~I~~ 75 (76)
T PF10262_consen 72 LIRD 75 (76)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 454
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=23.72 E-value=1.3e+02 Score=15.81 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=29.6
Q ss_pred EEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecc----cchhHHHhcCcccccEEEE
Q 033251 34 FTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD----ELKSVAEEWAVEAMPTFVL 86 (123)
Q Consensus 34 f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~----~~~~~~~~~~i~~~Pt~~~ 86 (123)
+|...++.|++.+-.++...-. .....++.. ..+++.+......+|++..
T Consensus 4 Ly~~~~~~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (81)
T cd03048 4 LYTHGTPNGFKVSIMLEELGLP---YEIHPVDISKGEQKKPEFLKINPNGRIPAIVD 57 (81)
T ss_pred EEeCCCCChHHHHHHHHHcCCC---cEEEEecCcCCcccCHHHHHhCcCCCCCEEEe
Confidence 4444458998888777766433 344445432 2245555555678999864
No 455
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=23.60 E-value=1.4e+02 Score=20.63 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.7
Q ss_pred eehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 11 HTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 11 ~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
.+.+++.+.+.+++..+.+.+|.+.++
T Consensus 166 ~~~~~l~~~l~~Al~~~Gps~I~v~~p 192 (279)
T PRK11866 166 GDVKHLKEIIKEAIKHKGFSFIDVLSP 192 (279)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 567889999999989999999999887
No 456
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=23.48 E-value=1.8e+02 Score=21.98 Aligned_cols=32 Identities=3% Similarity=0.007 Sum_probs=23.2
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
.-..+++.+++...+..+...+++.||.+.-+
T Consensus 494 ~~~~v~~~~el~~al~~a~~~~~p~lIeV~id 525 (548)
T PRK08978 494 PGQTITRKDQVEAALDTLLNSEGPYLLHVSID 525 (548)
T ss_pred eEEEECCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 34567777788888777777777888777753
No 457
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=23.23 E-value=1.2e+02 Score=21.16 Aligned_cols=90 Identities=10% Similarity=0.185 Sum_probs=63.1
Q ss_pred cCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCC-eEEEEEecccc--hhHHHhcC-----cccccEEEEecCCeEEEEEc
Q 033251 26 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDEL--KSVAEEWA-----VEAMPTFVLTKEGKVLERIV 97 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~-v~~~~i~~~~~--~~~~~~~~-----i~~~Pt~~~~~~g~~~~~~~ 97 (123)
+..-+++....+.|+-. -.+..++++.+-..+ +.+.--++.+. .++.+..| +.-+|.+.+..|=..+....
T Consensus 25 ~~gef~vliGpSGsGKT-TtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~ 103 (309)
T COG1125 25 EEGEFLVLIGPSGSGKT-TTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL 103 (309)
T ss_pred cCCeEEEEECCCCCcHH-HHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc
Confidence 34566677788899874 455677777766555 77776777653 34444443 34488888888877888888
Q ss_pred cCCHHHHHHHHHHHhcccc
Q 033251 98 GAKKDELQLAVEKHATTVE 116 (123)
Q Consensus 98 g~~~~~l~~~l~~~~~~~~ 116 (123)
|.+.+++.+.+++++....
T Consensus 104 ~w~k~~i~~r~~ELl~lvg 122 (309)
T COG1125 104 GWDKERIKKRADELLDLVG 122 (309)
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 9988888888888876543
No 458
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=23.14 E-value=2.7e+02 Score=19.40 Aligned_cols=50 Identities=6% Similarity=0.130 Sum_probs=35.2
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhh--hhhhHHHHHHHhhCC
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPC--KLMSPILSELAKKLP 57 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C--~~~~~~~~~~~~~~~ 57 (123)
..+.+.+.....+..+...+.|++|.+......+- ..+.+.+..+++.++
T Consensus 22 fN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~ 73 (287)
T PF01116_consen 22 FNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEAS 73 (287)
T ss_dssp EE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcC
Confidence 34556778888888888899999999986544332 455667788888875
No 459
>PRK08617 acetolactate synthase; Reviewed
Probab=23.09 E-value=1.9e+02 Score=21.93 Aligned_cols=32 Identities=13% Similarity=0.287 Sum_probs=24.0
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
.-..+++.+++...+..+...+++.||.+..+
T Consensus 505 ~~~~v~~~~eL~~al~~a~~~~~p~liev~~~ 536 (552)
T PRK08617 505 KGLRVTSPDELEPVLREALATDGPVVIDIPVD 536 (552)
T ss_pred eEEEECCHHHHHHHHHHHHhCCCcEEEEEEec
Confidence 34567788888888888777788888887754
No 460
>PRK12411 cytidine deaminase; Provisional
Probab=23.08 E-value=47 Score=20.13 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=9.4
Q ss_pred CCChhhhhhhHHH
Q 033251 37 SWCPPCKLMSPIL 49 (123)
Q Consensus 37 ~~C~~C~~~~~~~ 49 (123)
+=|+.|+++.-.+
T Consensus 84 sPCG~CRQ~l~Ef 96 (132)
T PRK12411 84 PPCGACRQVMVEL 96 (132)
T ss_pred CCchhHHHHHHHh
Confidence 5689998885544
No 461
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.99 E-value=1.8e+02 Score=22.09 Aligned_cols=29 Identities=17% Similarity=0.423 Sum_probs=18.2
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEc
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTA 36 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~ 36 (123)
..+.+.+++...+..+...+++.||.+..
T Consensus 509 ~~v~~~~el~~al~~a~~~~~p~lieV~v 537 (563)
T PRK08527 509 FRVTTKEEFDKALKEALESDKVALIDVKI 537 (563)
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 45566666666666665666666666654
No 462
>PF11551 Omp28: Outer membrane protein Omp28; InterPro: IPR021615 Omp28 is a 28kDa outer membrane protein from Porphyromonas gingivalis. Omp28 is thought to be a surface adhesion/receptor protein. Omp28 is expressed in a wide distribution of P.gingivalis strains []. ; PDB: 2R2C_A.
Probab=22.91 E-value=28 Score=22.36 Aligned_cols=25 Identities=16% Similarity=0.546 Sum_probs=0.0
Q ss_pred cchhHHHhcCcccccEEEEecCCeE
Q 033251 68 ELKSVAEEWAVEAMPTFVLTKEGKV 92 (123)
Q Consensus 68 ~~~~~~~~~~i~~~Pt~~~~~~g~~ 92 (123)
....+.+.|++.++|+.++.+.+..
T Consensus 7 ~s~~~~~~~~v~g~P~~~vNR~~~~ 31 (184)
T PF11551_consen 7 QSSALMKQWGVSGYPSAMVNRKGGW 31 (184)
T ss_dssp -------------------------
T ss_pred hhhcccccccCCCCCeEEEECCCcc
Confidence 3456678999999999999876433
No 463
>PF00838 TCTP: Translationally controlled tumour protein; InterPro: IPR018105 Mammalian translationally controlled tumour protein (TCTP) (or P23) is a protein which has been found to be preferentially synthesised in cells during the early growth phase of some types of tumour [, ], but which is also expressed in normal cells. The physiological function of TCTP is still not known. It was first identified as a histamine-releasing factor, acting in IgE +-dependent allergic reactions. In addition, TCTP has been shown to bind to tubulin in the cytoskeleton, has a high affinity for calcium, is the binding target for the antimalarial compound artemisinin, and is induced in vitamin D-dependent apoptosis. TCTP production is thought to be controlled at the translational as well as the transcriptional level []. TCTP is a hydrophilic protein of 18 to 20 kD. TCTPs do not share significant sequence similarity with any other class of proteins. Recently, the structure of TCTP was determined and exhibited significant structural similarity to the human protein Mss4, which is a guanine nucleotide-free chaperone of the Rab protein []. Close homologues have been found in plants [], earthworm [], Caenorhabditis elegans (F52H2.11), Hydra, Saccharomyces cerevisiae (YKL056c) [] and Schizosaccharomyces pombe (SpAC1F12.02c).; PDB: 2KWB_A 2LOY_A 1TXJ_A 1H6Q_A 1H7Y_A 3P3K_A 1YZ1_C 3EBM_D 2HR9_A.
Probab=22.86 E-value=27 Score=22.13 Aligned_cols=45 Identities=13% Similarity=0.322 Sum_probs=25.9
Q ss_pred hHHHHHHHhhCCCeEEEEEec---ccchhHHHhc-CcccccEEEEecCCe
Q 033251 46 SPILSELAKKLPAVIFLKVDV---DELKSVAEEW-AVEAMPTFVLTKEGK 91 (123)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~i~~---~~~~~~~~~~-~i~~~Pt~~~~~~g~ 91 (123)
...+..+..++.+++|+.-.- +..-.+ -.| .=..+|.+++|++|-
T Consensus 115 ~~~vK~il~nfkd~qFf~Gesm~~dgmv~l-~~yredg~tP~~~f~KdGL 163 (165)
T PF00838_consen 115 QEFVKKILANFKDYQFFTGESMDPDGMVAL-LNYREDGVTPYFIFFKDGL 163 (165)
T ss_dssp HHHHHHHHHTGGGCEEEEETTCCTTS-EEE-EEEETTSSSEEEEEEGGGE
T ss_pred HHHHHHHHhhccccccccccccCCCCcEEE-EEecCCCccEEEEEEcccc
Confidence 345566677777788875422 211122 222 234689999998874
No 464
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=22.76 E-value=1.8e+02 Score=18.49 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=15.8
Q ss_pred EeehhhHHHHHHhhhhcCCEEEEEEEc
Q 033251 10 CHTVESWNEQLQKGIAAKKLIVVDFTA 36 (123)
Q Consensus 10 i~~~~~~~~~~~~~~~~~k~~vv~f~~ 36 (123)
+.+.+++++.+. +...++|.+|.+..
T Consensus 130 v~~~~~l~~al~-a~~~~~p~li~v~~ 155 (181)
T TIGR03846 130 VADEEELRDALK-ALAMKGPTFIHVKV 155 (181)
T ss_pred eCCHHHHHHHHH-HHcCCCCEEEEEEe
Confidence 555666666664 55556666666654
No 465
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=22.64 E-value=25 Score=16.29 Aligned_cols=10 Identities=30% Similarity=0.673 Sum_probs=4.1
Q ss_pred CCChhhhhhh
Q 033251 37 SWCPPCKLMS 46 (123)
Q Consensus 37 ~~C~~C~~~~ 46 (123)
-||.+|..+.
T Consensus 4 yyCdyC~~~~ 13 (38)
T PF06220_consen 4 YYCDYCKKYL 13 (38)
T ss_dssp -B-TTT--B-
T ss_pred eeccccccee
Confidence 3788888776
No 466
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=22.56 E-value=2.7e+02 Score=19.29 Aligned_cols=50 Identities=8% Similarity=0.198 Sum_probs=35.6
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhh--hhhHHHHHHHhhCC
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCK--LMSPILSELAKKLP 57 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~--~~~~~~~~~~~~~~ 57 (123)
..+.+.+.....+..+...+.|+++.+......++- .+.+.+..+++...
T Consensus 18 fN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~ 69 (276)
T cd00947 18 FNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERAS 69 (276)
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC
Confidence 345667788888888888999999999765444433 45666677777763
No 467
>PRK08611 pyruvate oxidase; Provisional
Probab=22.56 E-value=1.7e+02 Score=22.39 Aligned_cols=32 Identities=13% Similarity=0.284 Sum_probs=24.4
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
.-..+.+.+++...+.++...++++||.+..+
T Consensus 499 ~~~~v~~~~eL~~al~~a~~~~~p~lIeV~vd 530 (576)
T PRK08611 499 KGYRVEKAEELDPAFEEALAQDKPVIIDVYVD 530 (576)
T ss_pred eEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 34677788888888888777788888887753
No 468
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=22.51 E-value=1.5e+02 Score=16.39 Aligned_cols=15 Identities=7% Similarity=-0.270 Sum_probs=5.9
Q ss_pred hhhhhHHHHHHHhhC
Q 033251 42 CKLMSPILSELAKKL 56 (123)
Q Consensus 42 C~~~~~~~~~~~~~~ 56 (123)
|+.-...--+++++-
T Consensus 56 sd~eLeE~~rl~~~~ 70 (81)
T cd06396 56 SQGEYEEALKSAVRQ 70 (81)
T ss_pred chhhHHHHHHHHHhC
Confidence 333333333444443
No 469
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=22.51 E-value=89 Score=18.22 Aligned_cols=16 Identities=31% Similarity=0.690 Sum_probs=12.2
Q ss_pred cCCChhhhhhhHHHHH
Q 033251 36 ASWCPPCKLMSPILSE 51 (123)
Q Consensus 36 ~~~C~~C~~~~~~~~~ 51 (123)
.+.||.|.+-+..+.+
T Consensus 31 ~s~Cp~C~kkraeLa~ 46 (104)
T PF15379_consen 31 SSQCPSCNKKRAELAQ 46 (104)
T ss_pred cccChHHHHHHHHHHH
Confidence 5789999988766643
No 470
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=22.44 E-value=1.7e+02 Score=22.02 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=24.9
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEc
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTA 36 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~ 36 (123)
.-..+++.+++...+.++...+++.||.+--
T Consensus 499 ~~~~V~~~~eL~~al~~a~~~~~p~lIev~v 529 (539)
T TIGR02418 499 KGLRVESPDQLEPTLRQAMEVEGPVVVDIPV 529 (539)
T ss_pred eEEEECCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3457888889999888888888888888874
No 471
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=22.29 E-value=59 Score=17.16 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=25.1
Q ss_pred cCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccE
Q 033251 36 ASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPT 83 (123)
Q Consensus 36 ~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt 83 (123)
...||.|.. ..+.+.|.++.++ +|.+ +..+++.++|+ +|-
T Consensus 17 ~~~Cp~Cgs-----~~~S~~w~G~v~i-~dPe-~S~vAk~~~i~-~pG 56 (64)
T PRK06393 17 EKTCPVHGD-----EKTTTEWFGFLII-TEPE-GSAIAKRAGIT-EPG 56 (64)
T ss_pred CCcCCCCCC-----CcCCcCcceEEEE-ECCc-hhHHHHHhCCC-CCC
Confidence 558999987 2444555553333 2444 46788888988 774
No 472
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=21.95 E-value=1.8e+02 Score=22.02 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=26.3
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
-..+.+.+++...+..+...++|.||.+.-+
T Consensus 497 ~~~v~~~~el~~al~~a~~~~~p~liev~i~ 527 (539)
T TIGR03393 497 CWRVSEAEQLADVLEKVAAHERLSLIEVVLP 527 (539)
T ss_pred eEEeccHHHHHHHHHHHhccCCeEEEEEEcC
Confidence 5678889999999998888899999998753
No 473
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=21.80 E-value=1.4e+02 Score=15.67 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=17.2
Q ss_pred CCCcEEEEeehhhHHHHHHhh
Q 033251 3 EEGQVISCHTVESWNEQLQKG 23 (123)
Q Consensus 3 ~~~~~~~i~~~~~~~~~~~~~ 23 (123)
.+|..+.+.+.+++..++...
T Consensus 48 ~e~d~v~l~sd~Dl~~a~~~~ 68 (81)
T cd05992 48 EDGDLVTISSDEDLEEAIEEA 68 (81)
T ss_pred CCCCEEEeCCHHHHHHHHHHH
Confidence 456788899989999988875
No 474
>PRK08322 acetolactate synthase; Reviewed
Probab=21.73 E-value=2e+02 Score=21.75 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=21.3
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEc
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTA 36 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~ 36 (123)
-..+++.++++..+.++...+++.||.+..
T Consensus 498 ~~~v~~~~eL~~al~~a~~~~~p~lIev~v 527 (547)
T PRK08322 498 GYRVESADDLLPTLEEALAQPGVHVIDCPV 527 (547)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 456677777777777776677777777764
No 475
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=21.70 E-value=1.8e+02 Score=22.18 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=21.6
Q ss_pred EEEEeehhhHHHHHHhhhhcCCEEEEEEEc
Q 033251 7 VISCHTVESWNEQLQKGIAAKKLIVVDFTA 36 (123)
Q Consensus 7 ~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~ 36 (123)
-..+.+.++++..+.++...+++.||.+.-
T Consensus 500 ~~~v~~~~eL~~al~~a~~~~~p~lIev~i 529 (574)
T PRK09124 500 GIRVEKASELDGALQRAFAHDGPALVDVVT 529 (574)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 356677777777777776777777777764
No 476
>PF07351 DUF1480: Protein of unknown function (DUF1480); InterPro: IPR009950 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=21.60 E-value=74 Score=17.44 Aligned_cols=28 Identities=7% Similarity=0.112 Sum_probs=21.8
Q ss_pred CeEEEEEecccchhHHHhcC----cccccEEE
Q 033251 58 AVIFLKVDVDELKSVAEEWA----VEAMPTFV 85 (123)
Q Consensus 58 ~v~~~~i~~~~~~~~~~~~~----i~~~Pt~~ 85 (123)
+-..++|-|..++++|-+++ -+++|.++
T Consensus 25 ~~~tlsIPCksdpdlcmQLDgWDe~TSiPA~l 56 (80)
T PF07351_consen 25 GEDTLSIPCKSDPDLCMQLDGWDEHTSIPAIL 56 (80)
T ss_pred CCCeEEeecCCChhheeEecccccCCccceEE
Confidence 36678888999999998775 46788765
No 477
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=21.59 E-value=1.7e+02 Score=20.05 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=20.3
Q ss_pred EEEEEEEcCCChhhh-hhhHHHHHHHhhCCCeEEEEEec
Q 033251 29 LIVVDFTASWCPPCK-LMSPILSELAKKLPAVIFLKVDV 66 (123)
Q Consensus 29 ~~vv~f~~~~C~~C~-~~~~~~~~~~~~~~~v~~~~i~~ 66 (123)
.+|+-|.+++-.... .+...-+++.+.||+..++..=.
T Consensus 3 IllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfT 41 (262)
T PF06180_consen 3 ILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFT 41 (262)
T ss_dssp EEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEch
Confidence 455666666665555 55666666777777755554433
No 478
>COG3697 CitX Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) [Coenzyme metabolism / Lipid metabolism]
Probab=21.58 E-value=1.6e+02 Score=18.91 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=51.6
Q ss_pred CCChhhhhhhHHHHHHHhhCC-C--eEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccCCHHHHHHHHHHHhc
Q 033251 37 SWCPPCKLMSPILSELAKKLP-A--VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHAT 113 (123)
Q Consensus 37 ~~C~~C~~~~~~~~~~~~~~~-~--v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~~~ 113 (123)
.-|.+-+.++..+-++.+.+| + +.+-.+|.+.+---.+.|+...-+.++--++.++=.+...-+.+++...|++++.
T Consensus 95 ~i~apAr~LK~~mi~LE~~~PLGRLwDiDVi~~~g~~LSR~~~~lp~R~CLiC~q~A~~CaR~rkHsveell~kIe~ll~ 174 (182)
T COG3697 95 SIAAPARDLKLAMIALEESHPLGRLWDIDVLDAEGEILSRRDFGLPPRRCLICEQSAKVCARGRKHSVEELLNKIEALLH 174 (182)
T ss_pred EecCcHHHHHHHHHHHHhcCChhhhccceeeccCCCEeeccccCCCCceeEeehhhHHHHhccccccHHHHHHHHHHHHh
Confidence 445668889999999999998 2 4444445444321134455555556777666666556444478889999888886
Q ss_pred cc
Q 033251 114 TV 115 (123)
Q Consensus 114 ~~ 115 (123)
..
T Consensus 175 d~ 176 (182)
T COG3697 175 DY 176 (182)
T ss_pred hh
Confidence 54
No 479
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=21.54 E-value=95 Score=15.01 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=18.6
Q ss_pred cCCeEEEEEccCCHHHHHHHHHHHh
Q 033251 88 KEGKVLERIVGAKKDELQLAVEKHA 112 (123)
Q Consensus 88 ~~g~~~~~~~g~~~~~l~~~l~~~~ 112 (123)
+.|+.+.........+|.+||..+-
T Consensus 12 ~tG~~l~g~~aP~~~~l~~WL~~~p 36 (45)
T smart00592 12 ETGKKLTGDDAPKAKDLERWLEENP 36 (45)
T ss_pred CCccEeccccCCcHHHHHHHHhcCC
Confidence 5777776665667889999988664
No 480
>PRK13817 ribosome-binding factor A; Provisional
Probab=21.52 E-value=1.9e+02 Score=17.13 Aligned_cols=36 Identities=11% Similarity=0.257 Sum_probs=24.6
Q ss_pred hHHHhcCcccccEEEEecCCeEEEEEccC-CHHHHHHHHHHHhc
Q 033251 71 SVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKHAT 113 (123)
Q Consensus 71 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~ 113 (123)
.+.++.++..+|.+.|+.+. .. ....+.+.|++...
T Consensus 75 ~l~~~l~lR~~PeL~F~~D~-------s~e~~~~I~~Ll~~l~~ 111 (119)
T PRK13817 75 LLAQATVLRYVPKLEFVYDE-------SIERAHRISLLIERALK 111 (119)
T ss_pred HHHHhCCCeECCEEEEEEcC-------chHHHHHHHHHHHHHHh
Confidence 45677889999998887552 22 35667777776654
No 481
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=21.51 E-value=3.2e+02 Score=19.62 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=43.4
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEecccchhHHHhcCcccccEEEEecCCeEEEEEccCCHHHH
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDEL 104 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l 104 (123)
..+++..++|.+...|- +...+....+.+.-..|++..-.-. -.....+..|.+.+|++...... ...+.++|
T Consensus 151 ~Rhq~ffVf~Gtge~PL---~d~fidAASe~~~~a~FfSaseeVa---Pe~~~~kempaV~VFKDetf~i~-de~dd~dL 223 (468)
T KOG4277|consen 151 ARHQPFFVFFGTGEGPL---FDAFIDAASEKFSVARFFSASEEVA---PEENDAKEMPAVAVFKDETFEIE-DEGDDEDL 223 (468)
T ss_pred hccCceEEEEeCCCCcH---HHHHHHHhhhheeeeeeeccccccC---CcccchhhccceEEEccceeEEE-ecCchhHH
Confidence 68899999998665442 1222222232222233333221111 23345677899999987543333 34456678
Q ss_pred HHHHHHH
Q 033251 105 QLAVEKH 111 (123)
Q Consensus 105 ~~~l~~~ 111 (123)
..||.+-
T Consensus 224 seWinRE 230 (468)
T KOG4277|consen 224 SEWINRE 230 (468)
T ss_pred HHHHhHh
Confidence 8888753
No 482
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.47 E-value=1.4e+02 Score=15.45 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=15.2
Q ss_pred hcCCEEEEEEEc-----------CCChhhhhhhH
Q 033251 25 AAKKLIVVDFTA-----------SWCPPCKLMSP 47 (123)
Q Consensus 25 ~~~k~~vv~f~~-----------~~C~~C~~~~~ 47 (123)
-.|.+++-.... +-||.|+..-.
T Consensus 22 v~G~pVvALCGk~wvp~rdp~~~PVCP~Ck~iye 55 (58)
T PF11238_consen 22 VMGTPVVALCGKVWVPTRDPKPFPVCPECKEIYE 55 (58)
T ss_pred hcCceeEeeeCceeCCCCCCCCCCCCcCHHHHHH
Confidence 467777766554 55888876543
No 483
>PRK07064 hypothetical protein; Provisional
Probab=21.33 E-value=1.8e+02 Score=21.88 Aligned_cols=32 Identities=9% Similarity=0.225 Sum_probs=24.0
Q ss_pred cEEEEeehhhHHHHHHhhhhcCCEEEEEEEcC
Q 033251 6 QVISCHTVESWNEQLQKGIAAKKLIVVDFTAS 37 (123)
Q Consensus 6 ~~~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~ 37 (123)
.-..+++.+++...+.++...+++.||...-+
T Consensus 497 ~~~~v~~~~eL~~al~~a~~~~~p~lIeV~~~ 528 (544)
T PRK07064 497 PHWRVTSADDFEAVLREALAKEGPVLVEVDML 528 (544)
T ss_pred eEEEeCCHHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 34567788888888888777788888887653
No 484
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=21.23 E-value=3.1e+02 Score=19.44 Aligned_cols=71 Identities=13% Similarity=0.247 Sum_probs=39.4
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHhhCCCeEEEEEeccc--chhHHHhcCcccccEEEEecCCeEEEEEccCCHHHHHHH
Q 033251 30 IVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDE--LKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLA 107 (123)
Q Consensus 30 ~vv~f~~~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 107 (123)
-++.|--..||+|-+.+..+ .|.++.+..+.++. -.++.-. ..+.+|.+++- |+- =.+..-|...
T Consensus 90 ~l~LyQyetCPFCcKVrAFL-----DyhgisY~VVEVnpV~r~eIk~S-sykKVPil~~~--Geq-----m~dSsvIIs~ 156 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFL-----DYHGISYAVVEVNPVLRQEIKWS-SYKKVPILLIR--GEQ-----MVDSSVIISL 156 (370)
T ss_pred eEEEEeeccCchHHHHHHHH-----hhcCCceEEEEecchhhhhcccc-ccccccEEEec--cce-----echhHHHHHH
Confidence 44444458999999887654 35565555554443 2222111 45678877764 441 1144566666
Q ss_pred HHHHhc
Q 033251 108 VEKHAT 113 (123)
Q Consensus 108 l~~~~~ 113 (123)
|..++.
T Consensus 157 laTyLq 162 (370)
T KOG3029|consen 157 LATYLQ 162 (370)
T ss_pred HHHHhc
Confidence 666653
No 485
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=21.11 E-value=2.1e+02 Score=17.52 Aligned_cols=6 Identities=33% Similarity=1.265 Sum_probs=2.4
Q ss_pred Chhhhh
Q 033251 39 CPPCKL 44 (123)
Q Consensus 39 C~~C~~ 44 (123)
|+.|++
T Consensus 88 CG~CRQ 93 (134)
T COG0295 88 CGACRQ 93 (134)
T ss_pred cHHHHH
Confidence 444433
No 486
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=21.04 E-value=3.9e+02 Score=20.50 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=35.4
Q ss_pred hHHHHHHhhhhcCCEEEEEE-EcCCChh-----hhhhhHHHHHHHhhCCCeEEEEEecccchh-----H---HHhcCccc
Q 033251 15 SWNEQLQKGIAAKKLIVVDF-TASWCPP-----CKLMSPILSELAKKLPAVIFLKVDVDELKS-----V---AEEWAVEA 80 (123)
Q Consensus 15 ~~~~~~~~~~~~~k~~vv~f-~~~~C~~-----C~~~~~~~~~~~~~~~~v~~~~i~~~~~~~-----~---~~~~~i~~ 80 (123)
+=.+.+.. =++++-|.+ ++..-+. =......++++...-+++.+..+|....++ + +.++|+..
T Consensus 38 ~T~~~L~~---L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~e~~~~~~~~~~~gi~~ 114 (552)
T TIGR03521 38 ASKEVVKK---LDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDEQGEEILDSLAQYGIKP 114 (552)
T ss_pred HHHHHHHh---CCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHHHHHHHHcCCCc
Confidence 34455543 234554544 4444331 233445555555554579999999877543 2 34477765
Q ss_pred cc
Q 033251 81 MP 82 (123)
Q Consensus 81 ~P 82 (123)
.+
T Consensus 115 ~~ 116 (552)
T TIGR03521 115 AN 116 (552)
T ss_pred ce
Confidence 55
No 487
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=21.02 E-value=36 Score=22.09 Aligned_cols=19 Identities=26% Similarity=0.821 Sum_probs=14.0
Q ss_pred cCCEEEEEEEcCCChhhhh
Q 033251 26 AKKLIVVDFTASWCPPCKL 44 (123)
Q Consensus 26 ~~k~~vv~f~~~~C~~C~~ 44 (123)
+.+.++=.||..||..|.-
T Consensus 4 k~~~~~gk~~iyWCe~cNl 22 (202)
T COG5270 4 KMPVVLGKFPIYWCEKCNL 22 (202)
T ss_pred ccceeecccceeehhhCCC
Confidence 3456666788899999874
No 488
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=20.95 E-value=2.1e+02 Score=21.82 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=17.9
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEc
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTA 36 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~ 36 (123)
..+++.+++...+.++...+++.||.+.-
T Consensus 517 ~~v~~~~el~~al~~a~~~~~p~lIev~i 545 (569)
T PRK09259 517 YNVTTPDELRHALTEAIASGKPTLINVVI 545 (569)
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 45566666666666665666666666654
No 489
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=20.93 E-value=71 Score=14.24 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=13.5
Q ss_pred CChhhhhhhHHHHHHHhh
Q 033251 38 WCPPCKLMSPILSELAKK 55 (123)
Q Consensus 38 ~C~~C~~~~~~~~~~~~~ 55 (123)
.|..|..+...++++...
T Consensus 3 ~C~~C~~~v~~i~~~l~~ 20 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKN 20 (39)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHc
Confidence 478888888888777653
No 490
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=20.80 E-value=3.3e+02 Score=19.63 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=39.7
Q ss_pred hcCCEEEEEEEcCCChhhhhhhHHHHHHHhhC---CCeEEEEEecccchhHHHhcCcccccEEEEecC
Q 033251 25 AAKKLIVVDFTASWCPPCKLMSPILSELAKKL---PAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKE 89 (123)
Q Consensus 25 ~~~k~~vv~f~~~~C~~C~~~~~~~~~~~~~~---~~v~~~~i~~~~~~~~~~~~~i~~~Pt~~~~~~ 89 (123)
....++++.= .|..+ .+.+.++.+.. ..+.|...|+.+...+.+-|....+-.++.|..
T Consensus 25 ~gy~v~~vDN---l~n~~---~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~Hfa~ 86 (343)
T KOG1371|consen 25 RGYGVVIVDN---LNNSY---LESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVMHFAA 86 (343)
T ss_pred CCCcEEEEec---ccccc---hhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEEeehh
Confidence 3445555543 33333 55555555444 469999999999988888888888777888743
No 491
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=20.66 E-value=72 Score=20.44 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=13.4
Q ss_pred EcCCChhhhhhhHHHHH
Q 033251 35 TASWCPPCKLMSPILSE 51 (123)
Q Consensus 35 ~~~~C~~C~~~~~~~~~ 51 (123)
+.+-|+.|+++...+..
T Consensus 101 f~tPCG~CRQfl~Ef~~ 117 (173)
T KOG0833|consen 101 FTTPCGVCRQFLREFGN 117 (173)
T ss_pred cCCCcHHHHHHHHHHhh
Confidence 46779999999877755
No 492
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=20.61 E-value=28 Score=23.85 Aligned_cols=6 Identities=50% Similarity=1.946 Sum_probs=2.4
Q ss_pred CChhhh
Q 033251 38 WCPPCK 43 (123)
Q Consensus 38 ~C~~C~ 43 (123)
|||.|+
T Consensus 266 ~CP~CQ 271 (272)
T PRK14810 266 YCPHCQ 271 (272)
T ss_pred ECcCCc
Confidence 344443
No 493
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=20.46 E-value=3.1e+02 Score=19.12 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=36.6
Q ss_pred EEEeehhhHHHHHHhhhhcCCEEEEEEEcCCChhhh--hhhHHHHHHHhhCC
Q 033251 8 ISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCK--LMSPILSELAKKLP 57 (123)
Q Consensus 8 ~~i~~~~~~~~~~~~~~~~~k~~vv~f~~~~C~~C~--~~~~~~~~~~~~~~ 57 (123)
..+.+.+.+...+..+...+.|+++.+......++- .+.+.+..+++++.
T Consensus 23 fN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK09195 23 FNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYH 74 (284)
T ss_pred EEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCC
Confidence 346677888888988888999999999765444443 35667777777764
No 494
>PRK05578 cytidine deaminase; Validated
Probab=20.35 E-value=59 Score=19.68 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEecc
Q 033251 37 SWCPPCKLMSPILSELAKKLPAVIFLKVDVD 67 (123)
Q Consensus 37 ~~C~~C~~~~~~~~~~~~~~~~v~~~~i~~~ 67 (123)
+-|+.|+++...+. .+++.++..+.+
T Consensus 84 sPCG~CRQ~l~e~~-----~~~~~v~l~~~~ 109 (131)
T PRK05578 84 SPCGRCRQVLAEFG-----GPDLLVTLVAKD 109 (131)
T ss_pred CccHHHHHHHHHhC-----CCCcEEEEEcCC
Confidence 57888888765552 135555444433
No 495
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.19 E-value=65 Score=21.40 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=30.9
Q ss_pred hhhhhhhHHHHHHHhhCCC--eEEEEEecccc-hhHHHhcCcccccE
Q 033251 40 PPCKLMSPILSELAKKLPA--VIFLKVDVDEL-KSVAEEWAVEAMPT 83 (123)
Q Consensus 40 ~~C~~~~~~~~~~~~~~~~--v~~~~i~~~~~-~~~~~~~~i~~~Pt 83 (123)
-.+..++..+++|.++|.+ ..+..=||... .+++.++..+.+|.
T Consensus 85 ~~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~ 131 (214)
T KOG0324|consen 85 LTEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPS 131 (214)
T ss_pred CCHHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccH
Confidence 3457889999999999986 55555566543 35566666666665
Done!