BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033252
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N4X|A Chain A, Structure Of Csm1 Full-Length
pdb|3N4X|B Chain B, Structure Of Csm1 Full-Length
pdb|3N4X|C Chain C, Structure Of Csm1 Full-Length
pdb|3N4X|D Chain D, Structure Of Csm1 Full-Length
pdb|3N7N|A Chain A, Structure Of Csm1LRS4 COMPLEX
pdb|3N7N|B Chain B, Structure Of Csm1LRS4 COMPLEX
pdb|3N7N|C Chain C, Structure Of Csm1LRS4 COMPLEX
pdb|3N7N|D Chain D, Structure Of Csm1LRS4 COMPLEX
pdb|4EMC|A Chain A, Structure Of A Complex Between S. Cerevisiae Csm1 And
Mam1
pdb|4EMC|B Chain B, Structure Of A Complex Between S. Cerevisiae Csm1 And
Mam1
Length = 190
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 10 LQRELETKANDLSKLQKDIGK-NHQVR--KKYTIQLGENELVLKEL 52
L +L+TKA ++ +LQK I N QV+ K T Q EN V+K+L
Sbjct: 32 LSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDL 77
>pdb|2ZQM|A Chain A, Crystal Structure Of The Prefoldin Beta Subunit From
Thermococcus Strain Ks-1
Length = 117
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 41 QLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAEL 92
+L E + L E+ L + A VYK +G ++VK +A A ++++IE + L
Sbjct: 35 ELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRL 86
>pdb|3SPG|A Chain A, Inward Rectifier Potassium Channel Kir2.2 R186a Mutant In
Complex With Pip2
Length = 343
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 79 ANVRKRIEYISAELYVSSYLVNWRFFAIFLLFNISHLVSW 118
N+ + + A+++ + + WR+ + LLF+++ LVSW
Sbjct: 22 TNMDDKPQRYIADMFTTCVDIRWRY--MLLLFSLAFLVSW 59
>pdb|3SPH|A Chain A, Inward Rectifier Potassium Channel Kir2.2 I223l Mutant In
Complex With Pip2
pdb|3SPJ|A Chain A, Apo Inward Rectifier Potassium Channel Kir2.2 I223l Mutant
Length = 343
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 79 ANVRKRIEYISAELYVSSYLVNWRFFAIFLLFNISHLVSW 118
N+ + + A+++ + + WR+ + LLF+++ LVSW
Sbjct: 22 TNMDDKPQRYIADMFTTCVDIRWRY--MLLLFSLAFLVSW 59
>pdb|3JYC|A Chain A, Crystal Structure Of The Eukaryotic Strong
Inward-Rectifier K+ Channel Kir2.2 At 3.1 Angstrom
Resolution
pdb|3SPC|A Chain A, Inward Rectifier Potassium Channel Kir2.2 In Complex With
Dioctanoylglycerol Pyrophosphate (Dgpp)
pdb|3SPI|A Chain A, Inward Rectifier Potassium Channel Kir2.2 In Complex With
Pip2
Length = 343
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 79 ANVRKRIEYISAELYVSSYLVNWRFFAIFLLFNISHLVSW 118
N+ + + A+++ + + WR+ + LLF+++ LVSW
Sbjct: 22 TNMDDKPQRYIADMFTTCVDIRWRY--MLLLFSLAFLVSW 59
>pdb|2ZDI|A Chain A, Crystal Structure Of Prefoldin From Pyrococcus
Horikoshii Ot3
pdb|2ZDI|B Chain B, Crystal Structure Of Prefoldin From Pyrococcus
Horikoshii Ot3
Length = 117
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 42 LGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAEL 92
L E + L+E+ L + A +YK +G ++VK +A ++++IE + L
Sbjct: 36 LNEAKKALEEIETLPDDAQIYKTVGTLIVKTTKEKAVQELKEKIETLEVRL 86
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 6 ALRELQRELETKANDLSKLQK-------DIGKNHQVRKKYTIQLGENELVLKELG----L 54
ALR+ Q +LE N++ +L+K + + Q+ K + ++ +L+ +G
Sbjct: 678 ALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPSKLATAV--DKAMLQRIGDAHLA 735
Query: 55 LNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSYLV 99
L EG V+ + PVL K+ RI++ AEL L+
Sbjct: 736 LPEGFTVHPRVRPVLEKR----REMAYEGRIDWAFAELLALGSLI 776
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 6 ALRELQRELETKANDLSKLQK-------DIGKNHQVRKKYTIQLGENELVLKELG----L 54
ALR+ Q +LE N++ +L+K + + Q+ K + ++ +L+ +G
Sbjct: 433 ALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQIPSKLATAV--DKAMLQRIGDAHLA 490
Query: 55 LNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSYLV 99
L EG V+ + PVL K+ RI++ AEL L+
Sbjct: 491 LPEGFTVHPRVRPVLEKR----REMAYEGRIDWAFAELLALGSLI 531
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,342,952
Number of Sequences: 62578
Number of extensions: 119315
Number of successful extensions: 453
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 30
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)